Query 033380
Match_columns 120
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 13:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 7.7E-62 1.7E-66 441.2 6.0 119 1-119 769-978 (978)
2 PF12757 DUF3812: Protein of u 47.9 4.7 0.0001 29.5 -0.6 46 34-79 36-89 (126)
3 COG0802 Predicted ATPase or ki 42.7 26 0.00057 26.9 2.8 32 31-62 6-37 (149)
4 PTZ00414 10 kDa heat shock pro 42.5 7.6 0.00016 28.1 -0.2 21 20-42 71-91 (100)
5 PHA02969 hypothetical protein; 41.0 9.3 0.0002 28.8 0.1 13 27-39 86-98 (111)
6 PF03610 EIIA-man: PTS system 37.7 41 0.00089 22.9 2.9 32 35-66 42-73 (116)
7 PRK14533 groES co-chaperonin G 34.9 12 0.00026 26.4 -0.2 21 20-42 62-82 (91)
8 PF02367 UPF0079: Uncharacteri 32.2 44 0.00094 24.4 2.4 18 45-62 10-27 (123)
9 cd00320 cpn10 Chaperonin 10 Kd 27.0 19 0.00041 24.9 -0.2 21 20-42 66-86 (93)
10 TIGR01451 B_ant_repeat conserv 26.9 37 0.00081 21.1 1.1 18 3-20 36-53 (53)
11 PF12503 CMV_1a_C: Cucumber mo 26.8 30 0.00066 25.1 0.8 15 2-21 33-47 (85)
12 PRK00364 groES co-chaperonin G 26.0 20 0.00044 24.9 -0.2 21 20-42 67-87 (95)
13 PF06918 DUF1280: Protein of u 24.7 81 0.0017 25.3 2.9 38 36-73 134-190 (224)
14 PF13330 Mucin2_WxxW: Mucin-2 21.9 46 0.001 22.5 0.9 14 105-118 73-86 (90)
15 COG2156 KdpC K+-transporting A 21.2 45 0.00097 27.1 0.8 22 6-27 62-83 (190)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=7.7e-62 Score=441.17 Aligned_cols=119 Identities=68% Similarity=1.111 Sum_probs=116.7
Q ss_pred CccCCCCccceeeeeecCceeeeccceeecCCccchhhhhhhhhhhCCCceeEEEeeecCCeeEEE--E-----echhhh
Q 033380 1 MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLW--I-----SAKVWH 73 (120)
Q Consensus 1 M~H~PSg~qWl~sR~e~~GYEEysgtE~rsaGctEEY~Vi~R~l~~~~~ee~l~lEgDIGGGLvl~--I-----~~~~~~ 73 (120)
|+|+|||+||||||+|+|||||||||||||||||||||||+|+|+|+++||+|+|||||||||||+ | |||+++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (978)
T PLN02763 769 MIHKPSGYQWLHSRIEIGGYEEYSGTEYRSAGCTEEYKVVERDLEQAGGEESLGLEGDIGGGLVLAREISIPKDSPKVVK 848 (978)
T ss_pred EEecCCcchhhhhhcccCceeeccccccccCCCchhHHHHHHHHHHcCCceeEEeeecccCcEEEEEEeecccCCCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999 5 999999
Q ss_pred H----------------------------------------------------------------------hHHH-----
Q 033380 74 L----------------------------------------------------------------------LIDL----- 78 (120)
Q Consensus 74 i----------------------------------------------------------------------LvD~----- 78 (120)
| ||||
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (978)
T PLN02763 849 ISSSIVARSVGAGSGGFSRLVCLRVHPTFKLLHPTESFVSFTAIDGSKHELWPEFGEQFYEGNDRPNGEWMLVDKETGLA 928 (978)
T ss_pred EeeeeEEeecccCCCCcceeEEEEeccceeecCccceeEEEEeccCcccccCCcccceeeecCCCCCceEEEEeccccee
Confidence 9 9999
Q ss_pred hhhhc--ccc-------cCCeeeeeeccccccCCCCCCeeeeeeeeEEec
Q 033380 79 MSRKF--SSV-------SSGTVNLELWSEERPVSKQSPLAVSHEYEVIKI 119 (120)
Q Consensus 79 lvnrF--~eV-------g~g~vnleLWSeeRpVSk~tPL~IsH~Yev~~~ 119 (120)
||||| +|| |||+||||||||||||||||||+|||+||||++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (978)
T PLN02763 929 VVNRFDVKEVEKCHVHWGPGTVNLELWSEERPVSKETPLSISHEYEVIDT 978 (978)
T ss_pred EEeecChhheEEEEEEecCCceeeeeecccCCcccCCCceEeeeeEEecC
Confidence 99999 888 999999999999999999999999999999985
No 2
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=47.86 E-value=4.7 Score=29.46 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=23.3
Q ss_pred cchhhhhhhhhhhCCCceeEE--EeeecCCeeEEE------EechhhhHhHHHh
Q 033380 34 TEEYSVVERSLQHGGEEESLM--LEGDIGGGGCLW------ISAKVWHLLIDLM 79 (120)
Q Consensus 34 tEEY~Vi~R~l~~~~~ee~l~--lEgDIGGGLvl~------I~~~~~~iLvD~l 79 (120)
.+||+-.-...+|......-- =.=||||||.|. |..+.|+=++|.+
T Consensus 36 ~~e~~~~A~~~Aq~~~~~~~~~~gkV~lGGGl~m~~~evd~IA~~rVqPvLdeI 89 (126)
T PF12757_consen 36 NEEWNRKALERAQANEEKRDENAGKVNLGGGLFMDQEEVDAIARKRVQPVLDEI 89 (126)
T ss_pred HHHHHHHHHHHHHHhHhhcccCCCeeeCCCCcccCHHHHHHHHHHhcCCchHHH
Confidence 345555555555544111111 124899999997 3444444445543
No 3
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=42.68 E-value=26 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCccchhhhhhhhhhhCCCceeEEEeeecCCe
Q 033380 31 AGCTEEYSVVERSLQHGGEEESLMLEGDIGGG 62 (120)
Q Consensus 31 aGctEEY~Vi~R~l~~~~~ee~l~lEgDIGGG 62 (120)
+.+.+-.++-++--++.....++.|+||.|-|
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAG 37 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAG 37 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCC
Confidence 34444455556666667799999999999987
No 4
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=42.47 E-value=7.6 Score=28.12 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.9
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 033380 20 YEEYCGTEYRSAGCTEEYSVVER 42 (120)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (120)
|.+|+|+|..-.| |||-|++-
T Consensus 71 ~~~y~Gtevk~dg--~ey~i~~e 91 (100)
T PTZ00414 71 LPEFGGSSVKVEG--EEFFLYNE 91 (100)
T ss_pred EcCCCCcEEEECC--EEEEEEEh
Confidence 8899999998877 88988763
No 5
>PHA02969 hypothetical protein; Provisional
Probab=41.04 E-value=9.3 Score=28.85 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=11.1
Q ss_pred eeecCCccchhhh
Q 033380 27 EYRSAGCTEEYSV 39 (120)
Q Consensus 27 E~rsaGctEEY~V 39 (120)
-|+|.||-|||+-
T Consensus 86 sfkskgcyeey~~ 98 (111)
T PHA02969 86 SFKSKGCYEEYKK 98 (111)
T ss_pred hhcccccHHHhcC
Confidence 4899999999973
No 6
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=37.73 E-value=41 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.6
Q ss_pred chhhhhhhhhhhCCCceeEEEeeecCCeeEEE
Q 033380 35 EEYSVVERSLQHGGEEESLMLEGDIGGGGCLW 66 (120)
Q Consensus 35 EEY~Vi~R~l~~~~~ee~l~lEgDIGGGLvl~ 66 (120)
+-++-++..+++...++-+.+-.|++||-...
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n 73 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGGGSPFN 73 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTTSHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCCCccch
Confidence 34567888888888888888899999996544
No 7
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=34.87 E-value=12 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=17.7
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 033380 20 YEEYCGTEYRSAGCTEEYSVVER 42 (120)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (120)
|.+|+|+|..-.| |+|.+++-
T Consensus 62 ~~~y~g~ev~~~~--~~y~iv~e 82 (91)
T PRK14533 62 FSKYAGTEIKIDD--EDYIIIDV 82 (91)
T ss_pred EccCCCeEEEECC--EEEEEEEh
Confidence 7889999998876 89988874
No 8
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=32.24 E-value=44 Score=24.40 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=14.2
Q ss_pred hhCCCceeEEEeeecCCe
Q 033380 45 QHGGEEESLMLEGDIGGG 62 (120)
Q Consensus 45 ~~~~~ee~l~lEgDIGGG 62 (120)
+......+++|.||+|.|
T Consensus 10 ~~l~~g~vi~L~GdLGaG 27 (123)
T PF02367_consen 10 QILKPGDVILLSGDLGAG 27 (123)
T ss_dssp HHHSS-EEEEEEESTTSS
T ss_pred HhCCCCCEEEEECCCCCC
Confidence 344677899999999998
No 9
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=27.02 E-value=19 Score=24.95 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=16.8
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 033380 20 YEEYCGTEYRSAGCTEEYSVVER 42 (120)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (120)
|.+|+|+|+.-.| ++|.+++.
T Consensus 66 ~~~~~g~~v~~~~--~~y~i~~~ 86 (93)
T cd00320 66 FPKYAGTEVKLDG--EEYLILRE 86 (93)
T ss_pred ECCCCceEEEECC--EEEEEEEH
Confidence 7889999998865 78887764
No 10
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.88 E-value=37 Score=21.06 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=16.1
Q ss_pred cCCCCccceeeeeecCce
Q 033380 3 HFPSGTQWLHSRVDVNGY 20 (120)
Q Consensus 3 H~PSg~qWl~sR~e~~GY 20 (120)
.+|+|.++..+-+.+|||
T Consensus 36 ~lP~g~~~v~~S~~~~g~ 53 (53)
T TIGR01451 36 ILPSGTTFVSNSVTVNGV 53 (53)
T ss_pred cCCCCCEEEeCcEEECCC
Confidence 479999999999999987
No 11
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=26.77 E-value=30 Score=25.12 Aligned_cols=15 Identities=53% Similarity=1.367 Sum_probs=11.4
Q ss_pred ccCCCCccceeeeeecCcee
Q 033380 2 AHFPSGTQWLHSRVDVNGYE 21 (120)
Q Consensus 2 ~H~PSg~qWl~sR~e~~GYE 21 (120)
+|+|+| +||+ -+||+
T Consensus 33 vHf~~G-rWm~----P~~~~ 47 (85)
T PF12503_consen 33 VHFPNG-RWMY----PEGYE 47 (85)
T ss_pred EEecCC-ceec----CCCeE
Confidence 599988 7998 55664
No 12
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=25.98 E-value=20 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=17.2
Q ss_pred eeeeccceeecCCccchhhhhhh
Q 033380 20 YEEYCGTEYRSAGCTEEYSVVER 42 (120)
Q Consensus 20 YEEysgtE~rsaGctEEY~Vi~R 42 (120)
|.+|+|+|..--| ++|.+++.
T Consensus 67 f~~~~g~ev~~~~--~~y~iv~~ 87 (95)
T PRK00364 67 FGKYAGTEVKIDG--EEYLILRE 87 (95)
T ss_pred EcCCCCeEEEECC--EEEEEEEH
Confidence 7889999998754 88988875
No 13
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=24.67 E-value=81 Score=25.33 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=25.5
Q ss_pred hhhhhhhhhhhCC------------CceeEEEeeecCCe---eEEEE----echhhh
Q 033380 36 EYSVVERSLQHGG------------EEESLMLEGDIGGG---GCLWI----SAKVWH 73 (120)
Q Consensus 36 EY~Vi~R~l~~~~------------~ee~l~lEgDIGGG---Lvl~I----~~~~~~ 73 (120)
==+++.+.|++.. ++=.|++-||=||+ |+++| +|+-.+
T Consensus 134 v~~~l~~rle~l~~~~~L~~~~~t~d~I~l~igGDkGg~~tKl~~~i~Nv~~PNs~~ 190 (224)
T PF06918_consen 134 VEKLLSRRLEQLSKSGKLIFDDGTGDEIWLGIGGDKGGDETKLCLQIENVDKPNSPH 190 (224)
T ss_pred HHHHHHHHHHHHHHcCCceeCCCCCCCEEEEEcccCCCCceEEEEEEeccCCCCCcC
Confidence 3456677776654 45678888999998 66776 555443
No 14
>PF13330 Mucin2_WxxW: Mucin-2 protein WxxW repeating region
Probab=21.87 E-value=46 Score=22.47 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=9.8
Q ss_pred CCCeeeeeeeeEEe
Q 033380 105 QSPLAVSHEYEVIK 118 (120)
Q Consensus 105 ~tPL~IsH~Yev~~ 118 (120)
|+|-.+||.||||-
T Consensus 73 Q~~~~~C~DYeVR~ 86 (90)
T PF13330_consen 73 QPGGQICYDYEVRF 86 (90)
T ss_pred CCCCCcCCCeeEEE
Confidence 34444599999984
No 15
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=21.23 E-value=45 Score=27.13 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.0
Q ss_pred CCccceeeeeecCceeeeccce
Q 033380 6 SGTQWLHSRVDVNGYEEYCGTE 27 (120)
Q Consensus 6 Sg~qWl~sR~e~~GYEEysgtE 27 (120)
++.+|||+|-..+++++|++..
T Consensus 62 t~~~yFhgRPsa~~~~~yn~~a 83 (190)
T COG2156 62 TSPGYFHGRPSATDGEPYNAVA 83 (190)
T ss_pred CCCccccCCCcccCCCCCCccc
Confidence 4678999999999999998776
Done!