BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033381
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 105/115 (91%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++P+RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 3 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 62
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 63 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 105/115 (91%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++P+RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 2 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 61
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 62 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 105/115 (91%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++P+RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++ +RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++ +RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 182 bits (463), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
KS+FK E+P E+R+AES RI +++ +RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 90/115 (78%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K FK +H LE R ESA+IR KYPDR+PVIVEK S I DIDK+KYLVP+D+TV QF+
Sbjct: 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI+L +EKAIF+FV +P ++ M +YE+ KDEDGFLY+ YSGENTFG
Sbjct: 62 WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 92/115 (80%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K +K EHP E+R++E +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF
Sbjct: 4 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 64 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 92/115 (80%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K +K EHP E+R++E +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF
Sbjct: 4 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 64 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 92/115 (80%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K +K EHP E+R++E +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF
Sbjct: 2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 61
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 62 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K +K EH E+R+AE +IR KYPDR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF
Sbjct: 10 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 69
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L E A+F FV N++PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 70 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 146 bits (368), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 90/114 (78%)
Query: 4 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVY 63
S +K+ H E RQ+++A++RE++PDR+P+I EK SDI ++D+ K+LVP+DLTVGQFV
Sbjct: 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVS 65
Query: 64 VVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
V+RKR++L AE A+F++ + + P++A M+ IY + KDEDGFLYM YSGE TFG
Sbjct: 66 VLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 87/113 (76%)
Query: 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
K +K +HP E R+ E +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF
Sbjct: 6 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 65
Query: 63 YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENT 115
+++RKRI L E A+F FV N +PPT+A M +YE+N +ED FLY+ YS E+
Sbjct: 66 FLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESV 118
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 84/107 (78%)
Query: 5 SFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64
+K +HP E R+ E +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF ++
Sbjct: 3 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 65 VRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111
+RKRI L E A+F FV N +PPT+A M +YE+N +ED FLY+ YS
Sbjct: 63 IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 1 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
M S K E E R AE+ +IR KYP+RIPV++E+A RS++P I+KKK+LVP ++ VG+
Sbjct: 3 MGMPSLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGE 62
Query: 61 FVYVVRKRIKLSA---------EKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111
F +++ + I SA E+ I++FV NI+P T +M +YE KDEDG+LYM YS
Sbjct: 63 FKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYS 122
Query: 112 GENTFG 117
E++ G
Sbjct: 123 SESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Query: 6 FKLEHPLERRQAESARIREKYPDRIPVIVEKAERSD-IPDIDKKKYLVPADLTVGQFVYV 64
FK L RQ E A IR K+P++IPV+VE+ R +P +DK K+LVP +LT+ QF+ +
Sbjct: 15 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 74
Query: 65 VRKRIKLSAEKAIFIFVKN-ILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+R R+ L A +A ++ V N L +A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct: 75 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVE--KAERSDIPDIDKKKYLVPADLTVG 59
++ +FK E+R + IRE++P +IPVI+E K E+ +P +DK K+LVP + +
Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQ-LPVLDKTKFLVPDHVNMS 61
Query: 60 QFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V + + + +S +YE KDEDGFLYM Y+ + TFG
Sbjct: 62 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVE--KAERSDIPDIDKKKYLVPADLTVG 59
++ +FK E+R + IRE++P +IPVI+E K E+ +P +DK K+LVP + +
Sbjct: 8 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V + + + +S +YE KDEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 78/122 (63%), Gaps = 4/122 (3%)
Query: 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVE--KAERSDIPDIDKKKYLVPADLTVG 59
++ +FK E+R + IRE++P +IPVI+E K E+ +P +DK K+LVP + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 118
+ + ++R+R++L+A +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGT 126
Query: 119 SF 120
+
Sbjct: 127 AL 128
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQ 60
++ +FK E+R + IRE++P +IPVI+E+ + +P +DK K+LVP + + +
Sbjct: 4 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 63
Query: 61 FVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+ ++R+R++L+A +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 64 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVE--KAERSDIPDIDKKKYLVPADLTVG 59
++ +FK E+R + IRE++P +IPVI+E K E+ +P +DK K+LVP + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 6 FKLEHPLERRQAESARIREKYPDRIPVIVE--KAERSDIPDIDKKKYLVPADLTVGQFVY 63
FK R E +IR+++P +IPVI+E K E+ +P +DK K+LVP + + + V
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQ-LPVLDKTKFLVPDHVNMSELVK 66
Query: 64 VVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
++R+R++L+ +A F+ V ++ + + ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct: 67 IIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 40 SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 99
D P + KK+ V T+ + ++K +KL A + +FI+V P+ E
Sbjct: 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC 73
Query: 100 KDEDGFLYMTYSGENTFG 117
DG L + Y +G
Sbjct: 74 FGSDGKLVLHYCKSQAWG 91
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 35 EKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94
E E S+I + KY+ P V F + + E+ + F+KN PPT+ ++
Sbjct: 85 EPGENSEI--LPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGT 142
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 62 VYVVRKRIKLSAEKAIFIFVKNILPPTAAM-MSAIYEENKDEDGFLYMTYSGEN 114
+ V + L AE+ +F K ++ PT A+ ++A+ E L + SG N
Sbjct: 253 ILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARLPQTLALLLSGGN 306
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 74 EKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLY 107
EKAI IF KN Y+E KD D FLY
Sbjct: 696 EKAIEIFAKN------------YDEFKDSDAFLY 717
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 74 EKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLY 107
EKAI IF KN Y+E KD D FLY
Sbjct: 673 EKAIEIFAKN------------YDEFKDSDAFLY 694
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 37 AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPP 87
AE+ ++ + K+ PA Q + + L + FV NI PP
Sbjct: 66 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 116
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 37 AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPP 87
AE+ ++ + K+ PA Q + + L + FV NI PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 37 AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPP 87
AE+ ++ + K+ PA Q + + L + FV NI PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,325,448
Number of Sequences: 62578
Number of extensions: 117860
Number of successful extensions: 389
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 34
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)