Query 033381
Match_columns 120
No_of_seqs 122 out of 389
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 9E-56 3.1E-60 311.4 14.7 116 2-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 1.4E-55 4.8E-60 313.0 13.1 117 2-118 9-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.4E-54 4.7E-59 305.8 12.4 114 4-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 8.6E-53 2.9E-57 295.7 13.2 117 2-118 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 1.1E-52 3.7E-57 300.0 10.8 116 2-118 9-126 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 2.9E-48 1E-52 269.9 12.6 110 3-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 3.9E-35 1.3E-39 197.9 10.4 85 32-117 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 8.5E-35 2.9E-39 198.0 9.6 85 27-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 3.4E-33 1.2E-37 188.4 9.9 85 27-117 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.8 0.011 3.8E-07 46.6 5.0 98 10-111 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.6 0.034 1.2E-06 43.3 6.9 81 28-112 183-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.0 0.014 4.9E-07 45.4 3.1 74 26-109 196-272 (274)
13 3goe_A DNA repair protein RAD6 92.7 0.093 3.2E-06 34.0 3.2 46 47-92 21-66 (82)
14 2uyz_B Small ubiquitin-related 86.4 1.7 5.8E-05 26.2 5.1 59 48-110 16-74 (79)
15 3a4r_A Nfatc2-interacting prot 86.2 2.1 7.1E-05 26.5 5.6 63 27-95 5-67 (79)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 83.2 5.8 0.0002 24.1 7.7 75 27-112 5-80 (87)
17 1oey_A P67-PHOX, neutrophil cy 83.2 3.5 0.00012 26.5 5.7 57 50-108 18-78 (83)
18 1wyw_B Ubiquitin-like protein 82.8 7 0.00024 24.7 7.3 76 26-111 18-93 (97)
19 1wy8_A NP95-like ring finger p 82.6 2.9 9.8E-05 25.7 5.1 56 52-111 26-81 (89)
20 1uh6_A Ubiquitin-like 5; beta- 82.3 3.9 0.00013 27.0 5.8 74 28-111 27-100 (100)
21 4dwf_A HLA-B-associated transc 81.6 4.8 0.00017 24.7 5.9 75 27-112 3-77 (90)
22 1we6_A Splicing factor, putati 81.2 8 0.00027 25.0 7.1 83 21-111 19-103 (111)
23 2k8h_A Small ubiquitin protein 81.0 9.8 0.00034 25.3 7.9 62 27-95 24-85 (110)
24 2hj8_A Interferon-induced 17 k 80.7 3.2 0.00011 25.8 4.8 60 49-112 18-77 (88)
25 3mtn_B UBA80, ubcep1, ubiquiti 80.7 1.7 5.6E-05 26.3 3.4 59 49-111 17-75 (85)
26 1ndd_A NEDD8, protein (ubiquit 80.2 2.1 7.3E-05 25.1 3.7 58 49-111 14-72 (76)
27 4eew_A Large proline-rich prot 80.1 5.7 0.0002 24.3 5.8 63 25-94 13-75 (88)
28 1wm3_A Ubiquitin-like protein 79.7 1.9 6.5E-05 26.1 3.4 48 47-95 13-60 (72)
29 1yqb_A Ubiquilin 3; structural 79.2 10 0.00034 24.3 7.4 75 27-112 20-94 (100)
30 3a9j_A Ubiquitin; protein comp 79.0 2.2 7.7E-05 25.0 3.5 58 49-111 14-72 (76)
31 3n3k_B Ubiquitin; hydrolase, p 79.0 1.5 5.2E-05 26.6 2.8 60 49-112 17-76 (85)
32 2kvr_A Ubiquitin carboxyl-term 77.8 2.3 7.8E-05 29.3 3.6 54 48-101 58-119 (130)
33 2dzi_A Ubiquitin-like protein 77.7 2.2 7.7E-05 25.5 3.2 60 28-94 6-65 (81)
34 2kk8_A Uncharacterized protein 77.1 5.2 0.00018 24.8 4.9 56 50-109 25-81 (84)
35 3plu_A Ubiquitin-like modifier 76.5 7.7 0.00026 25.3 5.8 81 19-110 11-92 (93)
36 2io0_B Small ubiquitin-related 76.2 2.6 8.8E-05 27.1 3.3 62 27-95 3-64 (91)
37 3phx_B Ubiquitin-like protein 75.5 3.5 0.00012 24.7 3.7 58 49-110 18-75 (79)
38 2l7r_A Ubiquitin-like protein 75.3 5.5 0.00019 25.0 4.8 71 27-110 17-88 (93)
39 2bwf_A Ubiquitin-like protein 74.8 3.9 0.00013 24.1 3.8 58 48-110 16-74 (77)
40 1wx7_A Ubiquilin 3; ubiquitin- 74.7 14 0.00047 23.6 7.5 74 27-112 15-89 (106)
41 3dbh_I NEDD8; cell cycle, acti 74.2 2.6 8.8E-05 25.7 2.9 58 49-110 26-83 (88)
42 2kan_A Uncharacterized protein 73.8 6.3 0.00022 24.9 4.8 75 27-112 13-88 (94)
43 3k9o_B Ubiquitin, UBB+1; E2-25 73.8 3.3 0.00011 25.8 3.4 60 49-112 15-74 (96)
44 2jxx_A Nfatc2-interacting prot 72.8 8.9 0.0003 25.0 5.4 65 25-95 21-85 (97)
45 1we7_A SF3A1 protein; structur 72.3 17 0.00059 23.6 9.1 85 22-111 18-107 (115)
46 4fbj_B NEDD8; effector-HOST ta 71.6 3.1 0.00011 25.9 2.8 59 49-111 14-72 (88)
47 1yx5_B Ubiquitin; proteasome, 71.5 4.2 0.00014 25.6 3.5 59 49-112 14-73 (98)
48 3v6c_B Ubiquitin; structural g 71.3 4.1 0.00014 25.3 3.4 45 49-94 31-75 (91)
49 2faz_A Ubiquitin-like containi 70.3 4.1 0.00014 24.3 3.1 56 50-110 18-75 (78)
50 1wju_A NEDD8 ultimate buster-1 69.5 6.9 0.00023 25.7 4.3 46 48-94 32-77 (100)
51 1wx8_A Riken cDNA 4931431F19; 68.6 7.7 0.00026 24.2 4.3 72 27-110 15-87 (96)
52 2klc_A Ubiquilin-1; ubiquitin- 68.5 12 0.0004 23.9 5.2 73 27-111 23-96 (101)
53 2kd0_A LRR repeats and ubiquit 68.2 3.7 0.00013 25.5 2.6 56 50-110 26-82 (85)
54 4hcn_B Polyubiquitin, ubiquiti 68.0 4.9 0.00017 25.4 3.2 73 27-110 20-93 (98)
55 2lxa_A Ubiquitin-like protein 67.9 12 0.00041 23.5 5.1 43 52-95 20-63 (87)
56 1sif_A Ubiquitin; hydrophobic 67.2 5.4 0.00018 24.7 3.2 58 49-111 23-81 (88)
57 1ip9_A BEM1 protein; ubiquitin 66.8 6.5 0.00022 25.4 3.6 31 50-81 26-56 (85)
58 1wgd_A Homocysteine-responsive 66.5 8.9 0.0003 23.8 4.2 76 28-111 6-85 (93)
59 4dbg_A Ranbp-type and C3HC4-ty 66.3 25 0.00086 23.2 7.2 61 29-94 24-84 (105)
60 1ttn_A DC-UBP, dendritic cell- 65.7 15 0.0005 23.6 5.3 75 28-113 22-97 (106)
61 2eke_C Ubiquitin-like protein 65.6 5.1 0.00017 26.6 3.0 48 47-95 42-89 (106)
62 3m63_B Ubiquitin domain-contai 64.1 4 0.00014 26.3 2.2 62 26-95 25-86 (101)
63 1vd2_A Protein kinase C, IOTA 64.1 26 0.00088 22.5 7.0 61 48-108 18-86 (89)
64 1v5t_A 8430435I17RIK protein; 63.7 14 0.00047 23.0 4.7 60 51-113 23-84 (90)
65 2ojr_A Ubiquitin; lanthide-bin 63.4 8.8 0.0003 24.9 3.9 58 49-111 49-107 (111)
66 2wyq_A HHR23A, UV excision rep 63.1 21 0.00073 21.2 7.2 76 27-113 3-82 (85)
67 3vdz_A Ubiquitin-40S ribosomal 62.6 6.8 0.00023 25.5 3.2 58 49-110 49-106 (111)
68 3b08_A Polyubiquitin-C, ubiqui 62.2 22 0.00074 23.4 5.8 58 49-111 90-148 (152)
69 1x1m_A Ubiquitin-like protein 60.7 24 0.00082 22.6 5.6 54 55-113 44-101 (107)
70 3m62_B UV excision repair prot 59.6 5.2 0.00018 25.9 2.2 60 50-113 16-75 (106)
71 2kdi_A Ubiquitin, vacuolar pro 59.3 6.4 0.00022 25.9 2.6 59 50-113 24-83 (114)
72 3rt3_B Ubiquitin-like protein 58.9 11 0.00037 25.5 3.9 59 50-111 17-76 (159)
73 3b1l_X E3 ubiquitin-protein li 63.3 2 6.9E-05 25.5 0.0 45 50-95 15-59 (76)
74 2fnj_B Transcription elongatio 58.4 16 0.00055 24.6 4.6 63 51-116 17-85 (118)
75 1j8c_A Ubiquitin-like protein 57.5 12 0.0004 25.1 3.7 72 28-111 31-103 (125)
76 1yfb_A Transition state regula 56.5 9.6 0.00033 22.6 2.8 21 63-83 28-48 (59)
77 1v5o_A 1700011N24RIK protein; 56.4 10 0.00035 24.2 3.2 57 50-110 26-83 (102)
78 1wjn_A Tubulin-folding protein 54.5 14 0.00049 23.2 3.6 32 50-81 27-59 (97)
79 2io1_B Small ubiquitin-related 54.1 17 0.00056 23.2 3.9 62 27-95 5-66 (94)
80 3b08_A Polyubiquitin-C, ubiqui 53.3 9.9 0.00034 25.2 2.8 58 49-111 14-72 (152)
81 1wxv_A BAG-family molecular ch 52.3 21 0.0007 22.0 4.1 74 28-113 6-86 (92)
82 2dzm_A FAS-associated factor 1 51.4 21 0.00073 23.1 4.2 61 50-114 23-84 (100)
83 3kyd_D Small ubiquitin-related 51.4 13 0.00045 25.0 3.2 62 27-95 38-99 (115)
84 2l66_A SSO7C4, transcriptional 51.2 13 0.00046 21.1 2.8 21 63-83 18-38 (53)
85 1v86_A DNA segment, CHR 7, way 50.3 11 0.00036 23.8 2.5 45 49-95 30-74 (95)
86 1uel_A HHR23B, UV excision rep 49.5 17 0.00058 22.7 3.3 60 49-113 14-77 (95)
87 2kc2_A Talin-1, F1; FERM, adhe 49.1 29 0.001 23.7 4.7 41 41-82 17-57 (128)
88 2d07_B Ubiquitin-like protein 48.3 25 0.00084 22.2 4.0 62 27-95 15-76 (93)
89 1v6e_A Cytoskeleton-associated 47.3 48 0.0017 20.5 6.2 47 28-79 6-53 (95)
90 1mvf_D MAZE protein, PEMI-like 46.8 13 0.00046 22.8 2.5 49 63-117 19-74 (82)
91 2kjr_A CG11242; UBL, ubiquitin 46.8 52 0.0018 20.8 8.4 64 27-94 13-81 (95)
92 1x5p_A Negative elongation fac 46.4 23 0.00078 21.6 3.6 34 79-113 18-59 (97)
93 3rt3_B Ubiquitin-like protein 46.3 24 0.00082 23.8 3.9 58 49-111 95-153 (159)
94 2e5i_A Heterogeneous nuclear r 45.5 20 0.00069 23.9 3.4 30 72-101 21-51 (124)
95 2daf_A FLJ35834 protein; hypot 45.4 34 0.0012 23.2 4.5 56 50-110 31-87 (118)
96 2kj6_A Tubulin folding cofacto 44.9 58 0.002 20.7 8.5 63 28-94 13-81 (97)
97 3u5e_m 60S ribosomal protein L 44.3 4.7 0.00016 26.9 0.0 45 50-95 15-59 (128)
98 4b6w_A Tubulin-specific chaper 43.7 20 0.00067 22.4 2.9 32 50-81 19-50 (86)
99 1pqs_A Cell division control p 43.7 16 0.00054 22.9 2.4 23 50-72 6-28 (77)
100 3u30_A Ubiquitin, linear DI-ub 43.4 24 0.00081 24.3 3.6 74 27-111 18-92 (172)
101 2kdb_A Homocysteine-responsive 42.7 20 0.00068 23.1 2.9 65 27-97 21-88 (99)
102 1q1o_A Cell division control p 42.6 11 0.00037 24.9 1.5 27 48-74 25-51 (98)
103 2bz2_A Negative elongation fac 42.3 22 0.00077 23.1 3.2 35 79-114 42-84 (121)
104 2l32_A Small archaeal modifier 41.0 23 0.0008 21.6 2.9 36 50-90 15-50 (74)
105 1wz0_A Ubiquitin-like protein 40.2 34 0.0012 22.2 3.8 61 28-95 23-83 (104)
106 2i1s_A Hypothetical protein; m 39.4 67 0.0023 22.7 5.6 29 47-75 23-51 (188)
107 3l0w_B Monoubiquitinated proli 39.3 33 0.0011 24.0 3.8 59 49-111 14-72 (169)
108 3u5c_f 40S ribosomal protein S 38.9 6.4 0.00022 27.5 0.0 45 50-95 15-59 (152)
109 3zzy_A Polypyrimidine tract-bi 37.9 28 0.00097 23.5 3.2 33 69-101 21-54 (130)
110 4a3p_A Ubiquitin carboxyl-term 37.7 99 0.0034 22.3 6.4 60 49-111 143-208 (217)
111 3tix_A Ubiquitin-like protein 37.5 42 0.0014 25.0 4.3 61 27-95 55-115 (207)
112 1j0g_A Hypothetical protein 18 36.8 83 0.0028 20.2 6.0 55 46-101 24-79 (92)
113 4ajy_B Transcription elongatio 36.3 28 0.00096 23.5 2.9 61 52-117 18-86 (118)
114 4efo_A Serine/threonine-protei 35.1 66 0.0022 20.8 4.5 36 48-83 26-61 (94)
115 1sjr_A Polypyrimidine tract-bi 35.0 60 0.0021 22.8 4.7 42 72-113 42-94 (164)
116 3q3f_A Ribonuclease/ubiquitin 34.9 28 0.00094 25.2 2.9 57 49-110 119-176 (189)
117 4a20_A Ubiquitin-like protein 34.7 25 0.00085 22.6 2.4 72 27-111 17-95 (98)
118 3d2w_A TAR DNA-binding protein 33.6 49 0.0017 19.9 3.6 36 79-114 14-59 (89)
119 1wf9_A NPL4 family protein; be 32.9 13 0.00043 24.1 0.7 60 50-115 21-98 (107)
120 3fdj_A DEGV family protein; GU 32.7 62 0.0021 24.3 4.7 52 48-113 34-86 (278)
121 3pge_A SUMO-modified prolifera 32.5 34 0.0012 25.1 3.0 49 27-82 27-75 (200)
122 2diu_A KIAA0430 protein; struc 32.3 68 0.0023 20.8 4.2 43 71-114 5-57 (96)
123 2ylm_A Ubiquitin carboxyl-term 32.2 43 0.0015 27.7 4.0 62 49-111 150-217 (530)
124 1t0y_A Tubulin folding cofacto 31.6 1.1E+02 0.0037 19.9 7.7 49 28-81 5-53 (122)
125 3gs2_A E3 ubiquitin-protein li 31.4 1.2E+02 0.004 20.3 9.2 84 29-112 3-109 (111)
126 1v2y_A 3300001G02RIK protein; 31.2 21 0.00072 23.4 1.6 65 50-117 22-101 (105)
127 1x4c_A Splicing factor, argini 30.8 68 0.0023 19.8 4.0 35 79-113 18-60 (108)
128 2kzr_A Ubiquitin thioesterase 30.5 40 0.0014 20.5 2.8 58 52-112 17-78 (86)
129 3beg_B Splicing factor, argini 30.3 67 0.0023 20.2 4.0 36 79-114 19-62 (115)
130 1ryj_A Unknown; beta/alpha pro 29.8 43 0.0015 19.8 2.7 36 50-90 18-53 (70)
131 2pjh_A Protein NPL4, nuclear p 29.4 27 0.00094 21.4 1.8 29 51-79 19-48 (80)
132 2wbr_A GW182, gawky, LD47780P; 28.9 85 0.0029 20.0 4.2 38 76-113 7-53 (89)
133 3ai5_A Yeast enhanced green fl 28.5 75 0.0026 24.7 4.6 46 49-95 247-292 (307)
134 3tuo_A DNA-binding protein SAT 28.4 1.2E+02 0.004 20.2 4.9 69 28-98 6-93 (105)
135 3s5o_A 4-hydroxy-2-oxoglutarat 26.8 55 0.0019 24.9 3.5 99 10-113 64-180 (307)
136 2cqh_A IGF-II mRNA-binding pro 26.8 48 0.0016 19.7 2.6 16 52-67 16-31 (93)
137 1ug8_A Poly(A)-specific ribonu 26.3 53 0.0018 21.1 2.8 18 14-31 41-58 (87)
138 3l21_A DHDPS, dihydrodipicolin 25.7 46 0.0016 25.3 2.9 99 10-113 65-179 (304)
139 2yxg_A DHDPS, dihydrodipicolin 25.4 49 0.0017 24.9 3.0 100 10-113 50-165 (289)
140 2w1t_A Spovt, stage V sporulat 25.2 52 0.0018 23.7 2.9 20 63-82 20-39 (178)
141 3e96_A Dihydrodipicolinate syn 25.0 50 0.0017 25.3 3.0 28 10-37 62-89 (316)
142 2ehh_A DHDPS, dihydrodipicolin 24.9 51 0.0017 24.8 3.0 100 10-113 50-165 (294)
143 2al3_A TUG long isoform; TUG U 24.7 81 0.0028 20.3 3.5 41 43-84 17-57 (90)
144 1f6k_A N-acetylneuraminate lya 24.4 53 0.0018 24.8 3.0 30 10-39 54-83 (293)
145 3cpr_A Dihydrodipicolinate syn 24.2 51 0.0017 25.1 2.9 30 10-39 66-95 (304)
146 3d0c_A Dihydrodipicolinate syn 23.7 55 0.0019 25.0 3.0 29 10-38 62-90 (314)
147 2wkj_A N-acetylneuraminate lya 23.6 53 0.0018 24.9 2.9 29 10-38 61-89 (303)
148 3eb2_A Putative dihydrodipicol 23.6 41 0.0014 25.6 2.2 99 10-113 54-168 (300)
149 3cmm_A Ubiquitin-activating en 23.5 85 0.0029 28.3 4.5 51 49-100 921-981 (1015)
150 3h5d_A DHDPS, dihydrodipicolin 23.4 65 0.0022 24.6 3.4 98 10-112 57-171 (311)
151 1wf0_A TDP-43, TAR DNA-binding 23.3 46 0.0016 19.6 2.1 26 89-114 19-53 (88)
152 3a5f_A Dihydrodipicolinate syn 23.3 51 0.0017 24.8 2.7 29 10-38 51-79 (291)
153 3m5v_A DHDPS, dihydrodipicolin 23.0 59 0.002 24.6 3.0 100 10-113 57-173 (301)
154 2r8w_A AGR_C_1641P; APC7498, d 22.9 57 0.002 25.2 3.0 100 10-114 84-199 (332)
155 3qze_A DHDPS, dihydrodipicolin 22.9 52 0.0018 25.2 2.7 29 10-38 73-101 (314)
156 3flu_A DHDPS, dihydrodipicolin 22.9 52 0.0018 24.9 2.7 30 9-38 56-85 (297)
157 1vjk_A Molybdopterin convertin 22.8 49 0.0017 20.7 2.2 42 49-90 30-81 (98)
158 3fkr_A L-2-keto-3-deoxyarabona 22.8 52 0.0018 25.1 2.7 97 10-110 58-172 (309)
159 3tak_A DHDPS, dihydrodipicolin 22.6 53 0.0018 24.7 2.7 29 10-38 51-79 (291)
160 2l76_A Nfatc2-interacting prot 22.5 1.1E+02 0.0039 19.8 3.9 48 47-95 32-79 (95)
161 2ojp_A DHDPS, dihydrodipicolin 22.5 54 0.0018 24.7 2.7 98 10-112 51-164 (292)
162 3nyi_A FAT acid-binding protei 22.4 1.6E+02 0.0056 22.2 5.4 59 46-113 35-95 (297)
163 3b4u_A Dihydrodipicolinate syn 22.0 68 0.0023 24.2 3.2 101 10-113 53-173 (294)
164 3daq_A DHDPS, dihydrodipicolin 21.9 56 0.0019 24.6 2.7 29 10-38 52-80 (292)
165 4dpp_A DHDPS 2, dihydrodipicol 21.6 60 0.0021 25.7 2.9 96 10-112 109-220 (360)
166 3dz1_A Dihydrodipicolinate syn 21.6 78 0.0027 24.1 3.5 97 10-110 58-170 (313)
167 2div_A TRNA selenocysteine ass 21.5 1.1E+02 0.0038 18.2 3.6 11 90-100 24-34 (99)
168 3po0_A Small archaeal modifier 21.5 37 0.0012 20.7 1.3 41 49-89 21-71 (89)
169 2e5j_A Methenyltetrahydrofolat 21.4 1.2E+02 0.004 18.1 3.8 17 52-68 27-43 (97)
170 1xky_A Dihydrodipicolinate syn 21.4 58 0.002 24.7 2.7 30 10-39 62-91 (301)
171 3na8_A Putative dihydrodipicol 21.2 48 0.0016 25.4 2.2 100 10-113 74-189 (315)
172 2cq4_A RNA binding motif prote 21.1 1.3E+02 0.0045 18.4 4.1 12 103-114 67-78 (114)
173 1o5k_A DHDPS, dihydrodipicolin 21.1 60 0.002 24.7 2.7 100 10-113 62-177 (306)
174 2rdm_A Response regulator rece 21.0 98 0.0034 18.6 3.4 54 17-72 68-124 (132)
175 2i2y_A Fusion protein consists 20.9 1.3E+02 0.0044 19.6 4.1 36 79-114 76-121 (150)
176 2rfg_A Dihydrodipicolinate syn 20.4 52 0.0018 24.9 2.2 30 10-39 50-79 (297)
177 3qij_A Protein 4.1; cytoskelet 20.3 2.2E+02 0.0076 21.1 5.8 65 24-94 12-81 (296)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=9e-56 Score=311.41 Aligned_cols=116 Identities=74% Similarity=1.191 Sum_probs=112.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
|+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHccCCCCeEEEEecCccccC
Q 033381 82 KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (120)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.4e-55 Score=312.98 Aligned_cols=117 Identities=56% Similarity=1.013 Sum_probs=113.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
|++.||+++|||+|++|+++||+|||+|||||||+++++++|.|||+|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHccCCCCeEEEEecCccccCC
Q 033381 82 KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 118 (120)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (120)
||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 9999999999999999999999999999999999994
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.4e-54 Score=305.77 Aligned_cols=114 Identities=54% Similarity=0.979 Sum_probs=111.0
Q ss_pred CcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC
Q 033381 4 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN 83 (120)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~ 83 (120)
++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhHccCCCCeEEEEecCccccC
Q 033381 84 ILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 84 ~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (120)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=8.6e-53 Score=295.72 Aligned_cols=117 Identities=61% Similarity=1.017 Sum_probs=114.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHccCCCCeEEEEecCccccCC
Q 033381 82 KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 118 (120)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (120)
||.+|++|++||+||++|||+||||||+||+++|||+
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999999999999999999999994
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=1.1e-52 Score=299.96 Aligned_cols=116 Identities=37% Similarity=0.745 Sum_probs=113.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC-CCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEE-
Q 033381 2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSD-IPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFI- 79 (120)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl- 79 (120)
|+ +||++||||+|++|+++||+|||+|||||||++++++ +|.|+|+||+||+++||++|+.+||+||+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 44 8999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhHccCCCCeEEEEecCccccCC
Q 033381 80 FVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 118 (120)
Q Consensus 80 ~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (120)
||||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~ 126 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHH
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCC
Confidence 999999999999999999999999999999999999996
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=2.9e-48 Score=269.94 Aligned_cols=110 Identities=56% Similarity=1.035 Sum_probs=107.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc
Q 033381 3 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK 82 (120)
Q Consensus 3 ~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (120)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|++++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 83 NILPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 83 ~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
|++|++|++||+||++|||+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=3.9e-35 Score=197.95 Aligned_cols=85 Identities=25% Similarity=0.426 Sum_probs=78.6
Q ss_pred EEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCC-CCCccchHHHHHhHccCCCCeEEEEe
Q 033381 32 VIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNI-LPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 32 VIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
|+|--.+.+++|.|+++||+||+++||++|+.+||+||++++++||||||||+ .|++|++||+||++|| +||||||+|
T Consensus 6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY 84 (91)
T ss_dssp EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence 44434445689999999999999999999999999999999999999999996 5899999999999999 999999999
Q ss_pred cCccccC
Q 033381 111 SGENTFG 117 (120)
Q Consensus 111 s~~~~fG 117 (120)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 4gdk_A 85 CKSQAWG 91 (91)
T ss_dssp ESSCCCC
T ss_pred eCccccC
Confidence 9999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=8.5e-35 Score=198.02 Aligned_cols=85 Identities=18% Similarity=0.379 Sum_probs=80.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC-CCCCccchHHHHHhHccCCCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-ILPPTAAMMSAIYEENKDEDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd~DGf 105 (120)
|+||+|++++.+ ++|.|+++||+||+++||++|+.+||+||+++ +||||||| .+|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~~--~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEECC--CCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 789999999885 59999999999999999999999999999998 99999999 689999999999999999 999
Q ss_pred EEEEecCccccC
Q 033381 106 LYMTYSGENTFG 117 (120)
Q Consensus 106 Lyi~Ys~~~~fG 117 (120)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.4e-33 Score=188.45 Aligned_cols=85 Identities=13% Similarity=0.360 Sum_probs=68.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCC-CCCccchHHHHHhHccCCCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNI-LPPTAAMMSAIYEENKDEDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd~DGf 105 (120)
|.||-|.....+ ++|.|+++||+||+++||++|+.+||+||++ ++|||||||+ .|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrfk~~g--~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKFQPIG--SIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEEEECC--C-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEEEecC--CCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 567666665544 8999999999999999999999999999999 6999999996 5999999999999999 7999
Q ss_pred EEEEecCccccC
Q 033381 106 LYMTYSGENTFG 117 (120)
Q Consensus 106 Lyi~Ys~~~~fG 117 (120)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.82 E-value=0.011 Score=46.57 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCC-CCCCCccceEEecC---CCchHhHHHHHHHHhC-CCCCceEEEEEcCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERS-DIPDIDKKKYLVPA---DLTVGQFVYVVRKRIK-LSAEKAIFIFVKNI 84 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~L~-l~~~~slfl~Vn~~ 84 (120)
+.|++=..-..++....+.+|||.|--.... ..+.+. -.++. ..|++++..- +..|. +-+..+..+++.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4444444445566655578999999765432 121111 11121 1277765410 22222 22334468889998
Q ss_pred CCCccchHHHHHhHccCCCCeEEEEec
Q 033381 85 LPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 85 lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
-|+.++.|..||++++-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.56 E-value=0.034 Score=43.33 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=49.5
Q ss_pred CeeeEEEEecCCCCCCCCccceEEe---cCCCchHhHHHHHHHHhC-C-C---CCceEEEEEcCCCCCccchHHHHHhHc
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLV---PADLTVGQFVYVVRKRIK-L-S---AEKAIFIFVKNILPPTAAMMSAIYEEN 99 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv---p~~~tv~~~~~~lRk~L~-l-~---~~~slfl~Vn~~lp~~~~~m~~lY~~~ 99 (120)
.+|||.|-... ++-|.+...-=-+ ....|++++.. ..|. + . ......+++.+.-++.++.|.+||+++
T Consensus 183 r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~---~~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l 258 (275)
T 4gdk_B 183 RYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLK---EVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHL 258 (275)
T ss_dssp SSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHH---HHCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHS
T ss_pred ccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHH---HhcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhc
Confidence 67999996421 1222222100000 12357777654 3342 1 1 113456777888899999999999999
Q ss_pred cCCCCeEEEEecC
Q 033381 100 KDEDGFLYMTYSG 112 (120)
Q Consensus 100 kd~DGfLyi~Ys~ 112 (120)
.-.||||||.-.-
T Consensus 259 ~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 259 SYPDNFLHISIIP 271 (275)
T ss_dssp CCTTSCEEEEEEE
T ss_pred cCCCceEEEEEEe
Confidence 9999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.99 E-value=0.014 Score=45.43 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEec---CCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCC
Q 033381 26 YPDRIPVIVEKAERSDIPDIDKKKYLVP---ADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE 102 (120)
Q Consensus 26 ~P~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~ 102 (120)
-...|||.|-.... |.+.. +|+ ...|++++.. ..+.. ......+++.+.-++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~~---~~iQ~---~i~~~~~~~TLg~~L~---~~lp~-l~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSNY---AVLQP---TVPVTDKELSVAELLD---SIKLS-SDGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTTS---CEECC---CCBCC---CBHHHHHH---TTTCC-C--CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCCC---CeEec---ccCCCCccccHHHHHH---Hhccc-cccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 45889999965332 21111 233 3667777654 33321 112344677888889999999999999999
Q ss_pred CCeEEEE
Q 033381 103 DGFLYMT 109 (120)
Q Consensus 103 DGfLyi~ 109 (120)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=92.74 E-value=0.093 Score=34.02 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=38.1
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchH
Q 033381 47 KKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMM 92 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m 92 (120)
.-+|.|+.+.+|.+++..-|++-+++++.++.|...+.-..+++++
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp 66 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV 66 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence 4689999999999999999999999999999888887543333333
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.35 E-value=1.7 Score=26.21 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=42.2
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEe
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++- -+ ++..|++..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~ 74 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQ 74 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEE
Confidence 356799999999999999999999988655555 555556677887751 11 233666654
No 15
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=86.16 E-value=2.1 Score=26.55 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-..++ ....|.|..+.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 5 ~~~i~ikV~~~~g~-----~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKEKH-----QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSSTT-----CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred CCEEEEEEEeCCCC-----EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 45666666432211 12468999999999999999999999988766666 55445667788877
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.21 E-value=5.8 Score=24.10 Aligned_cols=75 Identities=8% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (120)
|..+-|.|..... +...+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDG------GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQ-LEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTT------EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEE-EEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCCC------CEEEEEeCCCChHHHHHHHHHHHhCCChHHEE-EEECCEEccCCCCHHHC----CCCCCCE
Confidence 4567777754321 12245789999999999999999999877644 44466655667788765 22 3446
Q ss_pred EEEEecC
Q 033381 106 LYMTYSG 112 (120)
Q Consensus 106 Lyi~Ys~ 112 (120)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7776543
No 17
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=83.21 E-value=3.5 Score=26.48 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=43.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEc---CC-CCCccchHHHHHhHccCCCCeEEE
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK---NI-LPPTAAMMSAIYEENKDEDGFLYM 108 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---~~-lp~~~~~m~~lY~~~kd~DGfLyi 108 (120)
.-||.+.+++++...|++||+++++....-|=. +. .+..|+.|...++.=+ +|-|-+
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL 78 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL 78 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence 459999999999999999999987655555543 22 3678889999998875 445544
No 18
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=82.79 E-value=7 Score=24.74 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=51.3
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCe
Q 033381 26 YPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGF 105 (120)
Q Consensus 26 ~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGf 105 (120)
-+..+-|.|.-... +...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..
T Consensus 18 ~~~~m~I~Vk~~~g------~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~ 87 (97)
T 1wyw_B 18 EGEYIKLKVIGQDS------SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDV 87 (97)
T ss_dssp -CCEEEEEEECTTC------CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCE
T ss_pred CCCcEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCE
Confidence 45677788754322 12347799999999999999999999988655555 555556677888751 11 3346
Q ss_pred EEEEec
Q 033381 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|++...
T Consensus 88 I~l~~~ 93 (97)
T 1wyw_B 88 IEVYQE 93 (97)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 776654
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.59 E-value=2.9 Score=25.73 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=40.5
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEec
Q 033381 52 VPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .- .++..|++...
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~gk~L~d~~tL~~~--~i-~~g~~i~l~~~ 81 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRL-FYRGKQLENGYTLFDY--DV-GLNDIIQLLVR 81 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEE-EETTEECCSSSBHHHH--TC-CTTCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEE-EECCeECCCCCCHHHC--CC-CCCCEEEEEEe
Confidence 899999999999999999998776444 4466655667788765 11 13447777654
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.30 E-value=3.9 Score=26.97 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=49.3
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEE
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLY 107 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLy 107 (120)
.+|-|.|..... ++-.+-|..+.||+++...|..+-++++++-..+ .+++....+.+|++ |.-. ++..|.
T Consensus 27 ~mm~I~VKtl~G------k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~Gk~L~D~~TL~d-ygI~--~gstlh 96 (100)
T 1uh6_A 27 TMIEVVCNDRLG------KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWYTIFKDHVSLGD-YEIH--DGMNLE 96 (100)
T ss_dssp CEEEEEEECSSS------SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCSSCBHHH-HTCC--TTEEEE
T ss_pred CeEEEEEECCCC------CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCCHHH-cCCC--CCCEEE
Confidence 345666643321 1233568999999999999999999987764443 45655566778887 3322 344788
Q ss_pred EEec
Q 033381 108 MTYS 111 (120)
Q Consensus 108 i~Ys 111 (120)
|.|.
T Consensus 97 L~~~ 100 (100)
T 1uh6_A 97 LYYQ 100 (100)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8883
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=81.58 E-value=4.8 Score=24.74 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=50.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeE
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFL 106 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (120)
|..+-|.|.-... +...+-|..+.||+++...|..+.++++++--.+ .++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLDS------QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETTC------CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCCC------CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCeECCCCCCHHHc----CCCCcEE
Confidence 5667777754322 1234578999999999999999999987764444 466666667777763 2224466
Q ss_pred EEEecC
Q 033381 107 YMTYSG 112 (120)
Q Consensus 107 yi~Ys~ 112 (120)
+|....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 666543
No 22
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=81.24 E-value=8 Score=25.04 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred HHHHhCCCeeeEEEEecCCCCCCCCccceEEecC-CCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHc
Q 033381 21 RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPA-DLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 99 (120)
Q Consensus 21 ~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~-~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~ 99 (120)
....++|.-|.|.|.-.. .+.=+...+-|+. +.||+++...|....++++++--.+ .++.....+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~---~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~y---- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPN---ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GKAGFLKDNMSLAHY---- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTT---CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CSSSBCCTTSBTTTT----
T ss_pred HHHHhCCCcEEEEEEecc---cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEECCCCCcHHHC----
Confidence 344678888999885431 0000123467897 9999999999999999987654333 366655556666543
Q ss_pred cC-CCCeEEEEec
Q 033381 100 KD-EDGFLYMTYS 111 (120)
Q Consensus 100 kd-~DGfLyi~Ys 111 (120)
.- ++..|+|...
T Consensus 91 ~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 NVGAGEILTLSLR 103 (111)
T ss_dssp TCSSSCEEEEECS
T ss_pred CCCCCCEEEEEEE
Confidence 22 3446776653
No 23
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.04 E-value=9.8 Score=25.27 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=46.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-... ....|.|..+.+++.++....++.++++.+--|+| ++.-...+.|..++
T Consensus 24 ~~~I~IkVk~~~g------~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADG------AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTS------CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4567777743322 13468999999999999999999999988766776 44445567888887
No 24
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=80.74 E-value=3.2 Score=25.78 Aligned_cols=60 Identities=12% Similarity=-0.023 Sum_probs=42.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 4568999999999999999999988764444 4565556677887752 22 34478877653
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.70 E-value=1.7 Score=26.33 Aligned_cols=59 Identities=7% Similarity=0.061 Sum_probs=41.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.++++++-- |+.++.....+.+++++ .- .++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~qr-L~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 46799999999999999999999877543 44576655666777663 11 23457777654
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=80.18 E-value=2.1 Score=25.10 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=40.3
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.++++++ .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998775 4444566654556666543 22 3446666543
No 27
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=80.11 E-value=5.7 Score=24.28 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=43.8
Q ss_pred hCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHH
Q 033381 25 KYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94 (120)
Q Consensus 25 k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (120)
.-|..+.|.|...... ...+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 13 ~~~~~m~i~Vk~~~g~------~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQ------TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQE 75 (88)
T ss_dssp --CCEEEEEEEETTSC------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGG
T ss_pred cCCCeEEEEEEcCCCC------EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCcHHH
Confidence 3467788888553221 224578999999999999999999988765444 46666666777765
No 28
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=79.75 E-value=1.9 Score=26.13 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=36.4
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 47 KKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
.-.|.|.++.+++.++....++.++++++--|+|=+..+ .++.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 346899999999999999999999999877777754444 334454443
No 29
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=79.22 E-value=10 Score=24.26 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeE
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFL 106 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (120)
++.+-|.|..... +..+-|+.+.||+++...|..+.++++++-- |+.+++....+.+|++. .-+ ++..|
T Consensus 20 ~~~m~I~Vk~~~g-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--gI~-~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-------KEDFSVTDTCTIQQLKEEISQRFKAHPDQLV-LIFAGKILKDPDSLAQC--GVR-DGLTV 88 (100)
T ss_dssp TTEEEEEEECSSC-------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBHHHH--TCC-TTCEE
T ss_pred CCeEEEEEEcCCC-------cEEEEECCCCcHHHHHHHHHHHHCcChhhEE-EEECCEECCCcCcHHHC--CCC-CCCEE
Confidence 4567777754321 2346789999999999999999999876543 44566655667788765 111 34467
Q ss_pred EEEecC
Q 033381 107 YMTYSG 112 (120)
Q Consensus 107 yi~Ys~ 112 (120)
+|....
T Consensus 89 ~l~~r~ 94 (100)
T 1yqb_A 89 HLVIKR 94 (100)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 776554
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.04 E-value=2.2 Score=24.99 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=40.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998775 4444566544556666543 22 3446766543
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=78.97 E-value=1.5 Score=26.55 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=42.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.+|++. .- .++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TC-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CC-CCCCEEEEEEec
Confidence 4568999999999999999999998764 444566655666677653 11 234577776543
No 32
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=77.76 E-value=2.3 Score=29.27 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=39.5
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCC-ceEEEEEc--C-C----CCCccchHHHHHhHccC
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAE-KAIFIFVK--N-I----LPPTAAMMSAIYEENKD 101 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn--~-~----lp~~~~~m~~lY~~~kd 101 (120)
.-|.|.+++|+++|...|-+.++++++ ..++..+| | + ++.++.+|+..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999865 56677765 3 2 23445667666665433
No 33
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.67 E-value=2.2 Score=25.51 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=40.4
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHH
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (120)
..+-|.|..... +...+-|+.+.||+++...|.++.+++++.--. +.++.....+.++++
T Consensus 6 ~~m~i~vk~~~g------~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL-~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQG------RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRL-LFKGKALADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETTS------CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEE-EETTEECCTTSBGGG
T ss_pred CcEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EECCeECCCCCcHHH
Confidence 456677753321 122457899999999999999999998765443 346654455666655
No 34
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=77.06 E-value=5.2 Score=24.84 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=39.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCccchHHHHHhHccCCCCeEEEE
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNIL-PPTAAMMSAIYEENKDEDGFLYMT 109 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~l-p~~~~~m~~lY~~~kd~DGfLyi~ 109 (120)
.-|+.+.||+++...|..+.++++++-- |+.++.. ...+.+|++.= -+ ++..|++.
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv 81 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQT-LIVDGIVILREDLTVEQCQ--IV-PTSDIQLE 81 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCCSSSBHHHHT--CC-TTSCEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEE-EEECCEEecCCcCCHHHcC--CC-CCCEEEEE
Confidence 4689999999999999999999877543 4446654 66777887641 11 33356654
No 35
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=76.48 E-value=7.7 Score=25.29 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhH
Q 033381 19 SARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEE 98 (120)
Q Consensus 19 ~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~ 98 (120)
+..+....|.+|-|.|.-... ++..+-|.++.||++|...|..+.++++++-.-.| ++.....+.+|+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~G------kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRLG------KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTTS------CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCCC------CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 445566778889999964322 23457899999999999999999999988765555 666666666774 4
Q ss_pred ccCCCC-eEEEEe
Q 033381 99 NKDEDG-FLYMTY 110 (120)
Q Consensus 99 ~kd~DG-fLyi~Y 110 (120)
|.=.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 443333 565555
No 36
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=76.18 E-value=2.6 Score=27.08 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.8
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-..+ +.-.|.|.++.+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 3 ~~~i~ikVk~~~g------~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 3 NDHINLKVAGQDG------SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp -CEEEEEEECTTS------CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 4566666643221 2356899999999999999999999998776676644444 445555554
No 37
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=75.52 E-value=3.5 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=40.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEe
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- - .++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~--i-~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--L-KPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--C-CTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 4579999999999999999999998764 4445666555667776631 1 1344666654
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=75.33 E-value=5.5 Score=25.05 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (120)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .- ++..
T Consensus 17 ~~~m~I~Vk~-g-------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~y----~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA-Q-------ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVV-LLAGAPLEDEATLGQC----GVEALTT 83 (93)
T ss_dssp ---CEEEEES-S-------SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEE-EETTEECCTTSBHHHH----TCCSSCE
T ss_pred CCcEEEEEEC-C-------CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEE-EECCEECCCCCcHHHC----CCCCCCE
Confidence 4557777754 2 223467899999999999999999998775444 4466655667788765 22 3446
Q ss_pred EEEEe
Q 033381 106 LYMTY 110 (120)
Q Consensus 106 Lyi~Y 110 (120)
|++..
T Consensus 84 I~lv~ 88 (93)
T 2l7r_A 84 LEVAG 88 (93)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=74.81 E-value=3.9 Score=24.12 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=39.7
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEe
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (120)
..+-|+.+.||+++...|..+.+++++.-- |+.++.....+.++++. .- ++..|++.-
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQR-LIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEE-EEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 345789999999999999999999877544 44566555556666543 22 334666654
No 40
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.71 E-value=14 Score=23.58 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=49.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCC-Ce
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDED-GF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~D-Gf 105 (120)
+..+-|.|..... +..+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.+|+++ .-.| ..
T Consensus 15 ~~~m~I~Vk~~~g-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~ 82 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLT 82 (106)
T ss_dssp SSEEEEEEECSSC-------EEEEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEE
T ss_pred CceEEEEEEeCCC-------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCE
Confidence 3456677744321 23467899999999999999999998765 4445566655667788765 2233 36
Q ss_pred EEEEecC
Q 033381 106 LYMTYSG 112 (120)
Q Consensus 106 Lyi~Ys~ 112 (120)
|+|....
T Consensus 83 i~l~~~~ 89 (106)
T 1wx7_A 83 VHLVIKR 89 (106)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7776543
No 41
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=74.23 E-value=2.6 Score=25.72 Aligned_cols=58 Identities=5% Similarity=-0.012 Sum_probs=40.5
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEe
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 45799999999999999999999876543 33466655667777764 121 344666643
No 42
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=73.83 E-value=6.3 Score=24.94 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=49.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCcc-chHHHHHhHccCCCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTA-AMMSAIYEENKDEDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~-~~m~~lY~~~kd~DGf 105 (120)
+..+.|.|..... ....-|+.+.||+++...|..+.++++++-- |+.+++....+ .+|++.= -+ ++..
T Consensus 13 ~~~~~I~Vk~~~~-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~~tL~~yg--I~-~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPSK-------QFTVEVDRTETVSSLKDKIHIVENTPIKRMQ-LYYSGIELADDYRNLNEYG--IT-EFSE 81 (94)
T ss_dssp SCCEEEEEECSSC-------EEEEEECTTCBHHHHHHHHHHHSSSCTTTEE-EEETTEEECCTTSBHHHHT--CC-TTEE
T ss_pred CCCEEEEEEcCCc-------EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCEECCCCcccHHHCC--CC-CCCE
Confidence 4567777754221 2345699999999999999999999876533 44566555556 7887641 11 3446
Q ss_pred EEEEecC
Q 033381 106 LYMTYSG 112 (120)
Q Consensus 106 Lyi~Ys~ 112 (120)
|+|....
T Consensus 82 l~lv~r~ 88 (94)
T 2kan_A 82 IVVFLKS 88 (94)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7776543
No 43
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=73.78 E-value=3.3 Score=25.80 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=42.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|+++ .-+ ++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CCC-CCCEEEEEEEc
Confidence 456899999999999999999998775 4444577665666777763 111 34477777643
No 44
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=72.82 E-value=8.9 Score=25.00 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=46.5
Q ss_pred hCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 25 KYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 25 k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+-+++|-|.|.-..+. ....|.|..+.+++.++..-.++.+++.+.--|+| ++.-..+++|..+|
T Consensus 21 ~~~~~I~LkV~~~dg~-----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKH-----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp CSCSEEEEEEEESSSS-----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred CCCCeEEEEEEcCCCC-----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3456777766432211 12468999999999999999999999988655665 65555667788777
No 45
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=72.28 E-value=17 Score=23.57 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHhCCCeeeEEEEecCCCC--CCCCccce--EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHh
Q 033381 22 IREKYPDRIPVIVEKAERSD--IPDIDKKK--YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYE 97 (120)
Q Consensus 22 i~~k~P~~ipVIvE~~~~~~--~p~L~k~K--flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~ 97 (120)
..+.+|..|.|.|....... -.-|.... +-|+.+.||+++...|....++++++--.+ .++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-ECCEECCCCCCHHHC--
Confidence 56678999999996432111 11133333 568999999999999999999987754433 466555666788764
Q ss_pred HccC-CCCeEEEEec
Q 033381 98 ENKD-EDGFLYMTYS 111 (120)
Q Consensus 98 ~~kd-~DGfLyi~Ys 111 (120)
.- ++..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3446777654
No 46
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=71.60 E-value=3.1 Score=25.87 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=41.5
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~--~i-~~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADY--KI-LGGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTTTT--TC-CTTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEE-ECCeECCCCCcHHHc--CC-CCCCEEEEEEE
Confidence 3568899999999999999999987754433 466655667777764 11 13446777654
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=71.47 E-value=4.2 Score=25.63 Aligned_cols=59 Identities=7% Similarity=0.031 Sum_probs=41.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEecC
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEeC
Confidence 4568899999999999999999987754 444466544556676653 22 45577777654
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=71.25 E-value=4.1 Score=25.30 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=34.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHH
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (120)
.+-|+.+.||+++...|.++.++++++--. +.++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEEE-EECCeECCCcCcHHH
Confidence 456999999999999999999998775433 346665566677766
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=70.31 E-value=4.1 Score=24.28 Aligned_cols=56 Identities=2% Similarity=-0.071 Sum_probs=38.1
Q ss_pred EE-ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEe
Q 033381 50 YL-VPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 50 fl-vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (120)
+- |+.+.||+++...|..+.++++++--.+ .++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 8999999999999999999987754443 466544555666543 22 334566654
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.49 E-value=6.9 Score=25.73 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=36.3
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHH
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (120)
...-|+.+.||+++...|..+.++++.+--. ..+++....+.||++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrL-I~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKI-VINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEE-EETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEE-EeCCeECCCCCcHHH
Confidence 3455899999999999999999998776444 456766677788876
No 51
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.60 E-value=7.7 Score=24.19 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=47.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCC-e
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDG-F 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DG-f 105 (120)
+..+-|.|... . +...+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .-.|| .
T Consensus 15 ~~~m~i~Vk~~-g------~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~ 82 (96)
T 1wx8_A 15 SRIIRVSVKTP-Q------DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGST 82 (96)
T ss_dssp SCEEEEEEECS-S------SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEE
T ss_pred CCcEEEEEEEC-C------eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCE
Confidence 35566777543 1 1234678999999999999999999987654333 356555667788763 33344 5
Q ss_pred EEEEe
Q 033381 106 LYMTY 110 (120)
Q Consensus 106 Lyi~Y 110 (120)
|+|..
T Consensus 83 i~l~~ 87 (96)
T 1wx8_A 83 VHVVV 87 (96)
T ss_dssp EECCB
T ss_pred EEEEE
Confidence 55544
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.53 E-value=12 Score=23.92 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=49.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (120)
+..+-|.|...+ +...+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|+++ .- ++..
T Consensus 23 ~~~m~I~Vk~~g-------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTPK-------EKEEFAVPENSSVQQFKEEISKRFKSHTDQLV-LIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECSS-------CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEE-EEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeCC-------cEEEEEECCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCcCcHHHc----CCCCCCE
Confidence 577888886541 12346799999999999999999999876543 34466555556666553 33 3446
Q ss_pred EEEEec
Q 033381 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666554
No 53
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=68.18 E-value=3.7 Score=25.50 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=37.6
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCC-eEEEEe
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDG-FLYMTY 110 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DG-fLyi~Y 110 (120)
.-|+.+.||+++...|....++++++-- |+.+++....+.+|+++ .-.|| .|+|..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQK-LIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCE-EEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 4689999999999999999999876433 33466555555666543 22333 566543
No 54
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.98 E-value=4.9 Score=25.45 Aligned_cols=73 Identities=7% Similarity=0.079 Sum_probs=46.4
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCC-CCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE-DGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGf 105 (120)
+..+-|.|..... +...+-|+.+.||+++...|..+.++++++--. +.++.....+.+|+++ .=. +..
T Consensus 20 ~~~m~I~Vk~~~g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLTG------KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETTC------CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEE-EECCEECCCCCcHHHC----CCCCCCE
Confidence 3556677754322 123456899999999999999999998775433 3466655666677653 223 335
Q ss_pred EEEEe
Q 033381 106 LYMTY 110 (120)
Q Consensus 106 Lyi~Y 110 (120)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66543
No 55
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=67.95 E-value=12 Score=23.54 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=32.2
Q ss_pred ecCCCchHhHHHHH-HHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 52 VPADLTVGQFVYVV-RKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 52 vp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
++.+.||+++...| ..+-++++++--.+ .+++....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHHc
Confidence 34899999999999 77778887764444 466666777888854
No 56
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=67.18 E-value=5.4 Score=24.74 Aligned_cols=58 Identities=5% Similarity=0.051 Sum_probs=38.7
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.+++++.--. +.++.....+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhEEE-EECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 356899999999999999999998765433 3466544556666543 22 3336666543
No 57
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=66.81 E-value=6.5 Score=25.43 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.5
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
-.||.+.+++++..-|+.||+++ +.-++.|-
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 36999999999999999999994 33344443
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.53 E-value=8.9 Score=23.84 Aligned_cols=76 Identities=9% Similarity=0.159 Sum_probs=46.8
Q ss_pred CeeeEEEEecCCCCCCCCccceEE--ecCCCchHhHHHHHHHHh--CCCCCceEEEEEcCCCCCccchHHHHHhHccCCC
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYL--VPADLTVGQFVYVVRKRI--KLSAEKAIFIFVKNILPPTAAMMSAIYEENKDED 103 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kfl--vp~~~tv~~~~~~lRk~L--~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~D 103 (120)
..+.|.|...... ...+- |+.+.||+++...|.... ++++++--.+ .++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~~~------~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPNQR------HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSSSS------CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCCCC------eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-ECCEECcCcCCHHHHhcCCC-CC
Confidence 4567777543221 11243 559999999999999998 8877654333 45666566778887542222 33
Q ss_pred CeEEEEec
Q 033381 104 GFLYMTYS 111 (120)
Q Consensus 104 GfLyi~Ys 111 (120)
..|+|...
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 35666543
No 59
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=66.32 E-value=25 Score=23.16 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=43.1
Q ss_pred eeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHH
Q 033381 29 RIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSA 94 (120)
Q Consensus 29 ~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (120)
++-|.||-...+. ..-.+-|.++.||+++...|-.+.++++..-- ++.++.+...+.+|++
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 4456666644221 23446799999999999999999999987655 4446666666777764
No 60
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.68 E-value=15 Score=23.55 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=48.7
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeE
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFL 106 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfL 106 (120)
..+-|.|....+ +...+-|+.+.||+++...|..+.++++++--.+| ++.....+.+|++. .- ++..|
T Consensus 22 ~~m~I~Vk~~~g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~y----gI~~g~ti 90 (106)
T 1ttn_A 22 YECQLRLRLSTG------KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-SGRPLTDKMKFEEL----KIPKDYVV 90 (106)
T ss_dssp CSEEEEEEETTT------EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-TTEECCTTSHHHHC----CCSSSCEE
T ss_pred CeEEEEEEcCCC------CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHHc----CCCCCCEE
Confidence 346666654321 12346799999999999999999999877544444 66555666677653 22 34477
Q ss_pred EEEecCc
Q 033381 107 YMTYSGE 113 (120)
Q Consensus 107 yi~Ys~~ 113 (120)
+|.....
T Consensus 91 ~lv~~~~ 97 (106)
T 1ttn_A 91 QVIVSQP 97 (106)
T ss_dssp EEECCCS
T ss_pred EEEEeCC
Confidence 7766543
No 61
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=65.61 E-value=5.1 Score=26.57 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=36.5
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 47 KKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
...|.|..+.++..++.....+.++++++--|+|-+..+ ..+.|.++|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHc
Confidence 356899999999999999999999998876677744344 344555554
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.11 E-value=4 Score=26.34 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=39.9
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 26 YPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 26 ~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
-.-.|-|.|.. .+... .+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 25 ~~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESY 86 (101)
T ss_dssp ----CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTT
T ss_pred CCcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHC
Confidence 33456677764 32222 2458899999999999999999987654333 366655666677653
No 63
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=64.11 E-value=26 Score=22.51 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=43.6
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEE-EEcC--C--CCCccchHH---HHHhHccCCCCeEEE
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFI-FVKN--I--LPPTAAMMS---AIYEENKDEDGFLYM 108 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vn~--~--lp~~~~~m~---~lY~~~kd~DGfLyi 108 (120)
..+.||.+.++.++..-||.++++.+.+.+-+ |++. - ..+.|+.|. ++|+-.+|..=.|||
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 45789999999999999999999988887766 4543 1 357777665 466666644434443
No 64
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=63.72 E-value=14 Score=22.96 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=39.9
Q ss_pred EecCCCchHhHHHHHHHHhCCCCCceEEEE--EcCCCCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 51 LVPADLTVGQFVYVVRKRIKLSAEKAIFIF--VKNILPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~--Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
-|+.+.||++|...|..+.++++++--.+. .++.....+.+|+++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468899999999999999999876544330 455555566788763 112 234666655443
No 65
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=63.38 E-value=8.8 Score=24.87 Aligned_cols=58 Identities=7% Similarity=0.062 Sum_probs=40.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|+++ .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 45689999999999999999999877544 44466544556666553 22 3446666543
No 66
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=63.10 E-value=21 Score=21.22 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=47.9
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHH---hCCCCCceEEEEEcCCCCCccchHHHHHhHccC-C
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKR---IKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-E 102 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~ 102 (120)
|..+-|.|...... ...+-|+.+.||+++...|..+ -++++++- -|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQ-KLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGE-EEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHHe-EEEECCEECcCCCCHHH----cCCCC
Confidence 56677888654321 1245689999999999999998 46776543 34446665556667765 333 3
Q ss_pred CCeEEEEecCc
Q 033381 103 DGFLYMTYSGE 113 (120)
Q Consensus 103 DGfLyi~Ys~~ 113 (120)
+..|++..+..
T Consensus 72 g~~i~l~~~~~ 82 (85)
T 2wyq_A 72 KNFVVVMVTKT 82 (85)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEcCC
Confidence 45788776544
No 67
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=62.61 E-value=6.8 Score=25.51 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=40.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEe
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|+++= - .++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~g--I-~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDYN--I-QKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTTTTT--C-CTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHEE-EEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 46799999999999999999999877543 444666555666766531 1 1344666654
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=62.24 E-value=22 Score=23.41 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=40.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999987764444 466544556666553 22 3446777653
No 69
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.71 E-value=24 Score=22.56 Aligned_cols=54 Identities=2% Similarity=-0.049 Sum_probs=36.4
Q ss_pred CCchHhHHHHHHHHh--CCCCCc-eEEEEEcCCCCCccchHHHHHhHccCC-CCeEEEEecCc
Q 033381 55 DLTVGQFVYVVRKRI--KLSAEK-AIFIFVKNILPPTAAMMSAIYEENKDE-DGFLYMTYSGE 113 (120)
Q Consensus 55 ~~tv~~~~~~lRk~L--~l~~~~-slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGfLyi~Ys~~ 113 (120)
+.||+++...|..+. ++++.+ --.+ .++.....+.+|++. .-. +-.|+|.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YCGRKLKDDQTLDFY----GIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ETTEECCTTCBHHHH----TCCTTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-ECCeECCCCCcHHHc----CCCCCCEEEEEeCCC
Confidence 599999999999999 888776 3333 455544666788764 222 33566655443
No 70
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.58 E-value=5.2 Score=25.90 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=41.6
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
+-|+.+.||++|...|..+.++++++--.+ .++.....+.+|+++ .-+ ++..|++..+..
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~ 75 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIKLI-YSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQK 75 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ETTEECCTTSBTTTT--TCC-TTCEEEEECCC-
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECCEECCCcCCHHHc--CCC-CCCEEEEEEcCC
Confidence 458899999999999999999987654433 466655667777764 122 344777776543
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=59.35 E-value=6.4 Score=25.88 Aligned_cols=59 Identities=7% Similarity=0.029 Sum_probs=40.6
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEecCc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|+|.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 4588999999999999999999877543 44466544556666543 22 344677766543
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=58.94 E-value=11 Score=25.55 Aligned_cols=59 Identities=5% Similarity=0.078 Sum_probs=41.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEE-EEcCCCCCccchHHHHHhHccCCCCeEEEEec
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFI-FVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
+-|+.+.||+++...|....++++++--.+ |-++.....+.+|++. .- .++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i-~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GL-GPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TC-CTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CC-CCCCEEEEEcc
Confidence 468899999999999999999998755555 5255555666677653 11 13446666655
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=63.33 E-value=2 Score=25.53 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=31.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGKELPNHLTVQNC 59 (76)
Confidence 4578899999999999999998876544443 55544455666553
No 74
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=58.37 E-value=16 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=45.2
Q ss_pred EecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC------CCCeEEEEecCcccc
Q 033381 51 LVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD------EDGFLYMTYSGENTF 116 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd------~DGfLyi~Ys~~~~f 116 (120)
-|..+.||+++...|..+.++++.+--. +.+++....+.+|++ |.-. + .+--|++......+|
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQrL-i~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQRL-YKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCB
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeEE-EECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCce
Confidence 4889999999999999999998776433 356776677789987 3322 1 244688887754444
No 75
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.54 E-value=12 Score=25.10 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=46.6
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCC-eE
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDG-FL 106 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DG-fL 106 (120)
..+-|.|... . +...+-|+.+.||+++...|..+.++++++-- |+.+++....+.+|++ |.-.|| .|
T Consensus 31 ~~m~I~Vk~~-g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----ygI~~gstI 98 (125)
T 1j8c_A 31 KIIKVTVKTP-K------EKEEFAVPENSSVQQFKEAISKRFKSQTDQLV-LIFAGKILKDQDTLIQ----HGIHDGLTV 98 (125)
T ss_dssp CCEEEEEECS-S------CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEE-EEETTEEESTTSCGGG----TTCSSSEEE
T ss_pred CcEEEEEEeC-C------eEEEEEECCCCcHHHHHHHHHHHHCcCcceEE-EEECCEEcCCCCCHHH----cCCCCCCEE
Confidence 4466666443 1 12345789999999999999999999876543 4446655555667655 333344 66
Q ss_pred EEEec
Q 033381 107 YMTYS 111 (120)
Q Consensus 107 yi~Ys 111 (120)
+|...
T Consensus 99 ~lv~~ 103 (125)
T 1j8c_A 99 HLVIK 103 (125)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66654
No 76
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=56.54 E-value=9.6 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.3
Q ss_pred HHHHHHhCCCCCceEEEEEcC
Q 033381 63 YVVRKRIKLSAEKAIFIFVKN 83 (120)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~ 83 (120)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998864
No 77
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.40 E-value=10 Score=24.17 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=37.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCcc-chHHHHHhHccCCCCeEEEEe
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTA-AMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~-~~m~~lY~~~kd~DGfLyi~Y 110 (120)
.-|+.+.||++|...|..+.++++++-- |+.++.....+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEE
Confidence 4589999999999999999999876533 33455544444 477664 122 233566654
No 78
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.55 E-value=14 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=26.3
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCC-ceEEEEE
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAE-KAIFIFV 81 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~-~slfl~V 81 (120)
.-+|.++||+++...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4689999999999999999999865 5566553
No 79
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=54.09 E-value=17 Score=23.19 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-..+ +...|.|.++.+++.++....++.++++++--|+|-+..+ ..+.|.+++
T Consensus 5 ~~~i~ikVk~~~g------~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 5 NDHINLKVAGQDG------SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp -CEEEEEEECTTS------CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCCC------CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 4566666643221 2346899999999999999999999998876666654444 444555544
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=53.33 E-value=9.9 Score=25.17 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=39.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 3568999999999999999999987754444 455544555666543 22 3346666554
No 81
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.29 E-value=21 Score=21.97 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=44.9
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCC-----CchHhHHHHHHHHhCCCCCceEEEEEcCCCCCc-cchHHHHHhHccC
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPAD-----LTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPT-AAMMSAIYEENKD 101 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~-----~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~-~~~m~~lY~~~kd 101 (120)
..|-|.|.. .+. ...+-|+.+ .||++|...|..+.++++++--.+ .++..... +.+|+++ .=
T Consensus 6 ~~~~v~Vk~-~~~------~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTH-SNE------KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEEC-SSS------EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEE-CCE------EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECCeecCCCcccHHHC----CC
Confidence 456777754 211 223457774 999999999999999987654333 45554333 5578764 22
Q ss_pred CCC-eEEEEecCc
Q 033381 102 EDG-FLYMTYSGE 113 (120)
Q Consensus 102 ~DG-fLyi~Ys~~ 113 (120)
.|| .|+|.-+..
T Consensus 74 ~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 74 QDGCRVMLIGKKN 86 (92)
T ss_dssp CSSEEEEEESCCS
T ss_pred CCCCEEEEEecCC
Confidence 233 566654433
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.39 E-value=21 Score=23.07 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=40.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEE-cCCCCCccchHHHHHhHccCCCCeEEEEecCcc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGEN 114 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~V-n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 114 (120)
.-|+.+.|+++|...|..+-++++.+.-.++. .+. ...+.+|+++ .-+ ..-.|+|......
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSSSC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecCCC
Confidence 45889999999999999999998775444432 234 4556677765 122 2346666554443
No 83
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=51.38 E-value=13 Score=25.00 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=42.9
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-..+ ....|.|..+.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 38 ~~~I~LKV~~qdg------~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQDS------SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTTS------CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEcCCC------CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 4778887743221 1246899999999999999999999998877777744333 334444443
No 84
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=51.22 E-value=13 Score=21.09 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHHHhCCCCCceEEEEEcC
Q 033381 63 YVVRKRIKLSAEKAIFIFVKN 83 (120)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~ 83 (120)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 468999999999999998864
No 85
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.33 E-value=11 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=32.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
.+-|+.+.||++|...|..+.++++++--.+ .++... .|.+|+++
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 3568999999999999999999987643333 354433 45576654
No 86
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.47 E-value=17 Score=22.67 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=40.0
Q ss_pred eEEecCCCchHhHHHHHHHH---hCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEecCc
Q 033381 49 KYLVPADLTVGQFVYVVRKR---IKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
.+-|+.+.||+++...|..+ -++++++-- |+.++.....+.+|++ |.- ++..|++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qr-Li~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQK-LIYAGKILNDDTALKE----YKIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEE-EEETTEECCTTSBGGG----GTCCSSSEEEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEE-EEECCEECCCcCcHHH----CCCCCCCEEEEEEeCC
Confidence 35688999999999999998 457766533 3446665556667755 333 344777766543
No 87
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=49.10 E-value=29 Score=23.74 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc
Q 033381 41 DIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK 82 (120)
Q Consensus 41 ~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (120)
.+|+..-....|..+.+|++++..|-+++++...+- |-+|.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 366667778899999999999999999999986654 55553
No 88
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=48.27 E-value=25 Score=22.22 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+++|-|.|.-..+ ....|.|..+.+++.++.....+.++++++--|+|=+..+ ..+.|..++
T Consensus 15 ~~~i~ikV~~~~g------~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQDG------SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTTS------CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCCC------CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHc
Confidence 4677777743221 2346899999999999999999999998865566644444 344555443
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.34 E-value=48 Score=20.52 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=33.8
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCc-eEEE
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEK-AIFI 79 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~-slfl 79 (120)
..|.|.|..... + .....-|+.+.||+++...|..+.++++++ .|++
T Consensus 6 ~~v~l~I~~~~~---~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSLN---S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETTS---S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECCC---C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457787755322 1 224457999999999999999999998764 4444
No 90
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=46.85 E-value=13 Score=22.78 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCceEEEEEcC-C--C-CCcc---chHHHHHhHccCCCCeEEEEecCccccC
Q 033381 63 YVVRKRIKLSAEKAIFIFVKN-I--L-PPTA---AMMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~-~--l-p~~~---~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (120)
.-+|+.|++.+++.+.+.+.+ . + |... .++.++...+.+ | + +..+..||
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg 74 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWG 74 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC---------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccC
Confidence 457899999999999998864 3 2 5443 478899888853 3 2 23455566
No 91
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.84 E-value=52 Score=20.77 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=42.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc-CC----CCCccchHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NI----LPPTAAMMSA 94 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-~~----lp~~~~~m~~ 94 (120)
++.|.|.|.-..... .....-|+.+.||+++...|..+.++++++---+|.+ +. +-..+.+|++
T Consensus 13 ~~~v~l~It~s~~~~----~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDA----VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESSCSC----EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECCCCc----eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 477888885422111 1234579999999999999999999997754444443 32 2345567765
No 92
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.39 E-value=23 Score=21.56 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEcCCCCCccchHHHHHhHcc--------CCCCeEEEEecCc
Q 033381 79 IFVKNILPPTAAMMSAIYEENK--------DEDGFLYMTYSGE 113 (120)
Q Consensus 79 l~Vn~~lp~~~~~m~~lY~~~k--------d~DGfLyi~Ys~~ 113 (120)
|||.| +-...+.|.+++..|. ...||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 44555 4344456666666664 2356777777654
No 93
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=46.29 E-value=24 Score=23.78 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=40.7
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHcc-CCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK-DEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~k-d~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++. . .++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~y----~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEY----GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCeecCCCCCHHHc----CCCCCCEEEEEEe
Confidence 3568999999999999999999987764444 466555556676653 2 23446777654
No 94
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.50 E-value=20 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhHccC
Q 033381 72 SAEKAIFIFVKNI-LPPTAAMMSAIYEENKD 101 (120)
Q Consensus 72 ~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd 101 (120)
.++..|+|||.|- .+-....|.++|..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 4678899999984 35556788889988865
No 95
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.40 E-value=34 Score=23.21 Aligned_cols=56 Identities=2% Similarity=-0.025 Sum_probs=39.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCC-CCeEEEEe
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE-DGFLYMTY 110 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGfLyi~Y 110 (120)
.-++.+.||++|...|-...+++++.--.+| +++....++||.+ |+=. ++-++|.-
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-~GKiLKD~eTL~~----~gIk~g~TIhLvi 87 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-SGKILKNNETLVQ----HGVKPQEIVQVEI 87 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-TTEEECSSCCHHH----HSCCSSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-CCeEcCCcchHHH----cCCCCCCEEEEEE
Confidence 4588999999999999999999887644444 5655577888875 4443 33444443
No 96
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.91 E-value=58 Score=20.71 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=41.3
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC--CC----CCccchHHH
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN--IL----PPTAAMMSA 94 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~--~l----p~~~~~m~~ 94 (120)
+-|+|.|.-..... .....-|+.+.||+++...|..+.++++++---+|.+. .. ...+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56888885532111 12345799999999999999999999987544444441 22 234456765
No 97
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=44.25 E-value=4.7 Score=26.95 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECCEECCCCCchhhh
Confidence 457888999999999999888887654333 355544556666653
No 98
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=43.74 E-value=20 Score=22.40 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=25.9
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
--++.+.|++++..-|..+-++++++---+|.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 45899999999999999999999765444443
No 99
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=43.72 E-value=16 Score=22.88 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCC
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLS 72 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~ 72 (120)
..||.+.++.+|..-|++++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999864
No 100
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=43.36 E-value=24 Score=24.28 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=47.1
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCe
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (120)
+..+-|.|..... +...+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- ++..
T Consensus 18 ~~~m~i~Vk~~~g------~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~~L~d~~tL~~~----~i~~~~~ 86 (172)
T 3u30_A 18 GSHMQIFVKTLTG------KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKEST 86 (172)
T ss_dssp -CCEEEEEEETTT------EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGGG----TCCTTCE
T ss_pred CCcEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCccccccCCHhHc----CCcccce
Confidence 3455666653321 1223569999999999999999999988764433 466655666777663 22 3445
Q ss_pred EEEEec
Q 033381 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|++...
T Consensus 87 l~l~~~ 92 (172)
T 3u30_A 87 LHLVLR 92 (172)
T ss_dssp EEEEEC
T ss_pred eeeeec
Confidence 666544
No 101
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=42.66 E-value=20 Score=23.07 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=39.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHh--CCC-CCceEEEEEcCCCCCccchHHHHHh
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRI--KLS-AEKAIFIFVKNILPPTAAMMSAIYE 97 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L--~l~-~~~slfl~Vn~~lp~~~~~m~~lY~ 97 (120)
+..|.|.|.- .+.... .-.+-|+.+.||+++...|..++ ..+ ..+.| +.+++....+.+|++...
T Consensus 21 ~~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 4567777743 221110 11345799999999999999876 333 33333 346666667778887643
No 102
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.57 E-value=11 Score=24.94 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=23.2
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCC
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAE 74 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~ 74 (120)
...+||.+.++.+|..-|++++++..+
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~ 51 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHN 51 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCcc
Confidence 456799999999999999999987633
No 103
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=42.29 E-value=22 Score=23.06 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=22.5
Q ss_pred EEEcCCCCCccchHHHHHhHccCC--------CCeEEEEecCcc
Q 033381 79 IFVKNILPPTAAMMSAIYEENKDE--------DGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~lp~~~~~m~~lY~~~kd~--------DGfLyi~Ys~~~ 114 (120)
|||+| +.-..+.|.+++..|... -||-+|.|.+.+
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 45666 555556777777777542 477778776543
No 104
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=40.99 E-value=23 Score=21.58 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=27.5
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAA 90 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~ 90 (120)
.=+|+..|+++++ +.|++++++. -+.+|+...+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 5688999999854 6789998887 4888987655554
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.20 E-value=34 Score=22.21 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=42.7
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
++|-|.|.-..+ ....|.|..+.++..++....++.++++++--|+|=+..+ ..+.|..+|
T Consensus 23 ~~I~IkVk~~~g------~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 23 DHINLKVAGQDG------SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp CCEEEEEECSSS------CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred CeEEEEEECCCC------CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 566666643221 2346899999999999999999999998876677654444 444555544
No 106
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=39.38 E-value=67 Score=22.68 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=25.5
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCc
Q 033381 47 KKKYLVPADLTVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~ 75 (120)
-..+.||.+.|+.+|-.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 46789999999999999999999987643
No 107
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=39.31 E-value=33 Score=23.99 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=40.9
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccCCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y--~I-~~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY--NI-QKESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTEECCTTSBGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE-ECCccccCcCcHHHc--CC-CCCCEEEEEEE
Confidence 3568999999999999999999988765444 466555666777763 11 13446666654
No 108
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=38.85 E-value=6.4 Score=27.54 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEccccCcHHHc
Confidence 458889999999999999999987754433 455555666777764
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=37.93 E-value=28 Score=23.54 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=23.8
Q ss_pred hCCCCCceEEEEEcCC-CCCccchHHHHHhHccC
Q 033381 69 IKLSAEKAIFIFVKNI-LPPTAAMMSAIYEENKD 101 (120)
Q Consensus 69 L~l~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd 101 (120)
+.-.++.-|.|||.|- .+-..+.|.+++..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 3445678899999994 56677789999998864
No 110
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=37.66 E-value=99 Score=22.28 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=41.7
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCC--ceEEEEEc-CC---CCCccchHHHHHhHccCCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAE--KAIFIFVK-NI---LPPTAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~--~slfl~Vn-~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
...+++..|+.++...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. -.+|..|.|-.-
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999875 45565543 33 334566787752 334556666554
No 111
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=37.54 E-value=42 Score=24.95 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=43.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
.++|-|-|. .. =....|.|..+.++..++....++.+++.+.--|+| ++.-...+.|..+|
T Consensus 55 ~e~InLKVk-~d------G~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKVS-DG------SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CCEEEEEEE-CS------SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CCcEEEEEe-cC------CCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 456777773 21 134679999999999999999999999998777887 44333334444444
No 112
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=36.82 E-value=83 Score=20.20 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred ccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCccchHHHHHhHccC
Q 033381 46 DKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNIL-PPTAAMMSAIYEENKD 101 (120)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~l-p~~~~~m~~lY~~~kd 101 (120)
--+..-||++.-+..++.+--...++++..+ -+.-|+-+ ..++++-|++|=+|..
T Consensus 24 pfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 24 PYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 3466779999999999999999999988765 34445544 7888999999999963
No 113
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=36.33 E-value=28 Score=23.52 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=45.2
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-C-------CCeEEEEecCccccC
Q 033381 52 VPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-E-------DGFLYMTYSGENTFG 117 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~-------DGfLyi~Ys~~~~fG 117 (120)
|..+.||+++...|..+.++++.+--.+| +++....+.||++ |+= . +--|++.+....+|.
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCcc
Confidence 78999999999999999999987654444 5566666777765 221 2 558888888766665
No 114
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=35.11 E-value=66 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.2
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN 83 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~ 83 (120)
-++.|..+.|+..|...|.++-++++.+-..||-+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 458899999999999999999999998888888774
No 115
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=35.05 E-value=60 Score=22.83 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhHccCC----------CCeEEEEecCc
Q 033381 72 SAEKAIFIFVKNI-LPPTAAMMSAIYEENKDE----------DGFLYMTYSGE 113 (120)
Q Consensus 72 ~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd~----------DGfLyi~Ys~~ 113 (120)
.++..+.|||.|- .+-....|.++|..|.+. .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4567788999984 355667899999998642 34566666543
No 116
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=34.90 E-value=28 Score=25.19 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=39.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEe
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- ++..|+|.-
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~Gk~L~D~~tL~dy----gI~~gstI~Lvl 176 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVL 176 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTCBGGGG----TCCTTCEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECCEECCCCCCHHHC----CCCCCCEEEEEE
Confidence 3568999999999999999999987654333 466655567777763 22 344666554
No 117
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=34.73 E-value=25 Score=22.57 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=45.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceE----EecCCCchHhHHHHH-HHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKY----LVPADLTVGQFVYVV-RKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD 101 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kf----lvp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd 101 (120)
+..+-|.|.-.. .++| -|+.+.||+++...| ..+-++++++--.+ .++.....+.+|++ |+-
T Consensus 17 ~~~m~I~VKtl~--------g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~d----y~I 83 (98)
T 4a20_A 17 NAAVHLTLKKIQ--------APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSD----LKV 83 (98)
T ss_dssp -CCEEEEEEECS--------SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE-ETTEEECTTCBGGG----SCC
T ss_pred CCCEEEEEEcCC--------CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE-ECCEECcCcCCHHH----cCc
Confidence 456677775433 2233 256999999999999 77668877664444 46665566677776 332
Q ss_pred --CCCeEEEEec
Q 033381 102 --EDGFLYMTYS 111 (120)
Q Consensus 102 --~DGfLyi~Ys 111 (120)
++.+|++--+
T Consensus 84 ~~~g~ti~lmvs 95 (98)
T 4a20_A 84 TPANSTITVMIK 95 (98)
T ss_dssp BTTBCEEEEEEC
T ss_pred CCCCCEEEEEEe
Confidence 3446666543
No 118
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=33.59 E-value=49 Score=19.95 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=24.1
Q ss_pred EEEcCCCC-CccchHHHHHhHccC---------CCCeEEEEecCcc
Q 033381 79 IFVKNILP-PTAAMMSAIYEENKD---------EDGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~lp-~~~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (120)
|||+|--+ ..++.|.+++..|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55666333 344578888888863 3589999987654
No 119
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.91 E-value=13 Score=24.06 Aligned_cols=60 Identities=17% Similarity=0.369 Sum_probs=39.2
Q ss_pred EEec-CCCchHhHHHHHHHHhCCCCC-ceEEEEEcCC------------C---CCccchHHHHHhHccC-CCCeEEEEec
Q 033381 50 YLVP-ADLTVGQFVYVVRKRIKLSAE-KAIFIFVKNI------------L---PPTAAMMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 50 flvp-~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn~~------------l---p~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (120)
.-|. .+.||++|...|..+.++++. +.|++ ++. + ...+.+|+++ .- .+..|||.|.
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAYE 94 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCCS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEeC
Confidence 4578 899999999999999998765 44432 322 1 2344466543 22 2447899887
Q ss_pred Cccc
Q 033381 112 GENT 115 (120)
Q Consensus 112 ~~~~ 115 (120)
.+..
T Consensus 95 ~~~~ 98 (107)
T 1wf9_A 95 GERT 98 (107)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6643
No 120
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=32.74 E-value=62 Score=24.34 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccc-hHHHHHhHccCCCCeEEEEecCc
Q 033381 48 KKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAA-MMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~-~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
.-|.=..+++..+|...+++.= .+|.+++ ++++..+.|.+-|..|+++.|+.
T Consensus 34 ~~y~D~~di~~~efy~~~~~~~--------------~~p~TSqps~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 34 EEFCDDGQLDIHRMLDILEKHK--------------GRSYTACPGIDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp CEEECSTTCCHHHHHHHHHTCC--------------SCCEEECCCHHHHHHHHTTCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhCC--------------CCceecCCCHHHHHHHHhcCCcEEEEECCCc
Confidence 3455445778888888776431 1232222 34445555545678999998874
No 121
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=32.47 E-value=34 Score=25.10 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc
Q 033381 27 PDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK 82 (120)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (120)
.++|-|-|. .. =....|.|.++.++..++.....|.+++..+--|+|=+
T Consensus 27 ~~~I~LkV~-~~------g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG 75 (200)
T 3pge_A 27 ETHINLKVS-DG------SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG 75 (200)
T ss_dssp CCCEEEEEE-CS------SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETT
T ss_pred CCeEEEEEe-cC------CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECC
Confidence 466777673 21 13457999999999999999999999998877777744
No 122
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.29 E-value=68 Score=20.81 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCCCceEEEEEcCC-C-CCcc---chHHHHHhHcc-C----CCCeEEEEecCcc
Q 033381 71 LSAEKAIFIFVKNI-L-PPTA---AMMSAIYEENK-D----EDGFLYMTYSGEN 114 (120)
Q Consensus 71 l~~~~slfl~Vn~~-l-p~~~---~~m~~lY~~~k-d----~DGfLyi~Ys~~~ 114 (120)
++|++++ |||+|- . ...+ ..|.+|+..|. . .-||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 778872 1 2222 34788999995 2 3588899887654
No 123
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=32.22 E-value=43 Score=27.73 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=44.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc---CCC--CC-ccchHHHHHhHccCCCCeEEEEec
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK---NIL--PP-TAAMMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---~~l--p~-~~~~m~~lY~~~kd~DGfLyi~Ys 111 (120)
...|+.+.+++++...|+++++++++..|=||=. +.. .. ++.|+.+.+++-.|.| .|+.+=.
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ~~ 217 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQKD 217 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEEec
Confidence 3679999999999999999999999988877742 111 23 5668777775554322 5555543
No 124
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=31.64 E-value=1.1e+02 Score=19.93 Aligned_cols=49 Identities=4% Similarity=0.045 Sum_probs=34.7
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381 28 DRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV 81 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (120)
+.|.|.|...... .....-|+.+.||+++...|..+.++++++---+|.
T Consensus 5 ~~v~l~V~~~~~~-----~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNATD-----FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSCC-----SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCCC-----ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 4678877653321 223457999999999999999999998775433343
No 125
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=31.41 E-value=1.2e+02 Score=20.34 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=57.6
Q ss_pred eeeEEEEecCCCCC-CCCccceE-EecCCCchHhHHHHHHHHhCCCC----------------CceEEEEEc---CC--C
Q 033381 29 RIPVIVEKAERSDI-PDIDKKKY-LVPADLTVGQFVYVVRKRIKLSA----------------EKAIFIFVK---NI--L 85 (120)
Q Consensus 29 ~ipVIvE~~~~~~~-p~L~k~Kf-lvp~~~tv~~~~~~lRk~L~l~~----------------~~slfl~Vn---~~--l 85 (120)
-|-++..++|.--. -.....+| +-+.+.||.++...|.-||.|+. ....-+||- +. .
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 45677777763211 11234566 47899999999999998887651 113344443 22 4
Q ss_pred CCccchHHHHHhHccCCCCeEEEEecC
Q 033381 86 PPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 86 p~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+.++++.++-++|=-.+-=|-|-||-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 788999999999995577888888874
No 126
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.24 E-value=21 Score=23.40 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=43.5
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCC--------------ceEEEEEcCCCC-CccchHHHHHhHccCCCCeEEEEecCcc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAE--------------KAIFIFVKNILP-PTAAMMSAIYEENKDEDGFLYMTYSGEN 114 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~--------------~slfl~Vn~~lp-~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 114 (120)
.-|+.+.||+++...|..+.++++. ...-|.-++... ..+.+|++ |. =+ ++.+|++.-....
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I~-~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-IR-NRDEVSFIKKLGQ 98 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-CC-SSEEEEEEECSCS
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-CC-CCCEEEEEehhcc
Confidence 3588999999999999999877652 234454566544 45578887 22 11 3557887776666
Q ss_pred ccC
Q 033381 115 TFG 117 (120)
Q Consensus 115 ~fG 117 (120)
..|
T Consensus 99 ~~~ 101 (105)
T 1v2y_A 99 KSG 101 (105)
T ss_dssp CCC
T ss_pred CCC
Confidence 555
No 127
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.78 E-value=68 Score=19.77 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=17.9
Q ss_pred EEEcCCCC-CccchHHHHHhHccC-------CCCeEEEEecCc
Q 033381 79 IFVKNILP-PTAAMMSAIYEENKD-------EDGFLYMTYSGE 113 (120)
Q Consensus 79 l~Vn~~lp-~~~~~m~~lY~~~kd-------~DGfLyi~Ys~~ 113 (120)
|||.|--+ ...+.|.+++..|.+ .|||-+|.|.+.
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 44554222 233456666666642 136777777654
No 128
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=30.55 E-value=40 Score=20.46 Aligned_cols=58 Identities=3% Similarity=-0.000 Sum_probs=35.5
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEc-CC-CC-C-ccchHHHHHhHccCCCCeEEEEecC
Q 033381 52 VPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NI-LP-P-TAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-~~-lp-~-~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
++.+.||+++...|..+.++.+..--.+|-. .+ +. . .+.+++++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 6789999999999999999875543333321 12 32 2 455665531 11 23467776654
No 129
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=30.34 E-value=67 Score=20.23 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=22.4
Q ss_pred EEEcCCCC-CccchHHHHHhHccC-------CCCeEEEEecCcc
Q 033381 79 IFVKNILP-PTAAMMSAIYEENKD-------EDGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~lp-~~~~~m~~lY~~~kd-------~DGfLyi~Ys~~~ 114 (120)
|||.|--+ ...+.|.+++..|.+ .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 45555322 345577888887753 2388888887644
No 130
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=29.77 E-value=43 Score=19.78 Aligned_cols=36 Identities=6% Similarity=0.046 Sum_probs=24.6
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccc
Q 033381 50 YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAA 90 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~ 90 (120)
+-++...|++++.. .|++++. .+.+.||+.+.+.+.
T Consensus 18 ~~~~~~~tv~~Ll~----~l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLG----ELEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHH----HTTCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHH----HhCCCCC-CEEEEECCEECCCcc
Confidence 56788889998665 4466654 466889987644443
No 131
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=29.45 E-value=27 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.7
Q ss_pred EecCCCchHhHHHHHHHHhCCCC-CceEEE
Q 033381 51 LVPADLTVGQFVYVVRKRIKLSA-EKAIFI 79 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~-~~slfl 79 (120)
-|+.+.|++++...|...++++. .+++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 36788899999999999999863 345543
No 132
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=28.87 E-value=85 Score=19.95 Aligned_cols=38 Identities=11% Similarity=0.337 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCc-cchHHHHHhHccC--------CCCeEEEEecCc
Q 033381 76 AIFIFVKNILPPT-AAMMSAIYEENKD--------EDGFLYMTYSGE 113 (120)
Q Consensus 76 slfl~Vn~~lp~~-~~~m~~lY~~~kd--------~DGfLyi~Ys~~ 113 (120)
+-.|||.|--+.. .+.|.+|+.+|.. .-||=.|.|++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 5578898876654 4699999999854 367777777765
No 133
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=28.46 E-value=75 Score=24.66 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=33.2
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
..-|+.+.||+++...|..+.++++++--.+ .+++....+.+|++.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi-~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEE-eCCeecCCCCCHHHc
Confidence 3468999999999999999999987754333 455544556666543
No 134
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=28.35 E-value=1.2e+02 Score=20.18 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=46.4
Q ss_pred Ceee--EEEEecCCCCCCCCcc----ceE-EecCCCchHhHHHHHHHHhCCCCC----ceEEEEEcC-C-C------CCc
Q 033381 28 DRIP--VIVEKAERSDIPDIDK----KKY-LVPADLTVGQFVYVVRKRIKLSAE----KAIFIFVKN-I-L------PPT 88 (120)
Q Consensus 28 ~~ip--VIvE~~~~~~~p~L~k----~Kf-lvp~~~tv~~~~~~lRk~L~l~~~----~slfl~Vn~-~-l------p~~ 88 (120)
..+| .|||.... .+..+. .-| +||++..+.|++...=.+|+.+.+ ..=-+-|+| + + +.+
T Consensus 6 ~mlPV~CVVE~~~~--~~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p 83 (105)
T 3tuo_A 6 TMLPVFCVVEHYEN--AIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAP 83 (105)
T ss_dssp SEEEEEEEEEEECC--CSSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCT
T ss_pred cceeeEEEEEeccc--ccccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCc
Confidence 4567 47787752 122222 134 899999999999999999998743 222456776 2 2 478
Q ss_pred cchHHHHHhH
Q 033381 89 AAMMSAIYEE 98 (120)
Q Consensus 89 ~~~m~~lY~~ 98 (120)
+.|+|++-.+
T Consensus 84 ~~TV~d~L~e 93 (105)
T 3tuo_A 84 DATVADMLQD 93 (105)
T ss_dssp TCBHHHHHTT
T ss_pred hhhHHHHHHH
Confidence 8899988654
No 135
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=26.77 E-value=55 Score=24.89 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC-----chHhHHHHHHHHhCCCCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL-----TVGQFVYVVRKRIKLSAE 74 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~-----tv~~~~~~lRk~L~l~~~ 74 (120)
-|.|||.+-.+...+.-..++|||+--..++. +-.+. .--.++|.-. +-.++..+.+.=..- ..
T Consensus 64 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a-~~ 142 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL-SP 142 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH-CS
T ss_pred CCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh-cC
Confidence 46799999999999988999999996543221 00010 1123344432 334555555432211 12
Q ss_pred ceEEEEEcC--C-CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 75 KAIFIFVKN--I-LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 75 ~slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
-.++||=+- + ..-..+++.+|-+ + +.+.-|.+++-
T Consensus 143 lPiilYn~P~~tg~~l~~~~~~~La~-~---pnIvgiKdssg 180 (307)
T 3s5o_A 143 IPVVLYSVPANTGLDLPVDAVVTLSQ-H---PNIVGMXDSGG 180 (307)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHHT-S---TTEEEEEECSC
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHhc-C---CCEEEEEcCCC
Confidence 458887641 1 2222345666642 2 45666666653
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.76 E-value=48 Score=19.70 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=8.1
Q ss_pred ecCCCchHhHHHHHHH
Q 033381 52 VPADLTVGQFVYVVRK 67 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk 67 (120)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555555555554443
No 137
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=26.32 E-value=53 Score=21.08 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCeee
Q 033381 14 RRQAESARIREKYPDRIP 31 (120)
Q Consensus 14 ~R~~e~~~i~~k~P~~ip 31 (120)
+|+--++.++.+||++|-
T Consensus 41 ~RkLIYQ~~~~kfp~~i~ 58 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGIH 58 (87)
T ss_dssp HHHHHHHHHHHHSSSSEE
T ss_pred HHHHHHHHHHHhcCCceE
Confidence 466689999999999984
No 138
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=25.70 E-value=46 Score=25.35 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-..++|||+--..++. +-.+. .--.++|... +-.++..+.+.=..-. +-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 46799999999999888899999996543321 00000 0122333221 3455555554433222 446
Q ss_pred EEEEEcC---CCCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKN---ILPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+- ...-..+++.+|- ++ +.+.-|.+++-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 8888541 1222335667775 22 45777777654
No 139
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=25.38 E-value=49 Score=24.87 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCc----------cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSDIPDID----------KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~----------k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-.+++|||+--..++..-.++ .--.++|+-. +-.++..+.+.=..- ..-.
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lP 128 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INLP 128 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 4679999999988888888999999665432100000 0112333322 334444444432211 1235
Q ss_pred EEEEEcC---CCCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKN---ILPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+- ...-..+++.+|-+++ +.+.-|.+|+-
T Consensus 129 iilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 129 IVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 8887642 1223345788886444 45766777653
No 140
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=25.20 E-value=52 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=18.2
Q ss_pred HHHHHHhCCCCCceEEEEEc
Q 033381 63 YVVRKRIKLSAEKAIFIFVK 82 (120)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn 82 (120)
.-+|++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999996
No 141
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.97 E-value=50 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEec
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKA 37 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~ 37 (120)
-|.|||.+-.+...+.-..++|||+--.
T Consensus 62 Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4679999999999988889999999764
No 142
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.86 E-value=51 Score=24.85 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-.+++|||+--..++. +-.+. .--.++|.-. +-.++..+.+.=..- ..-.
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lP 128 (294)
T 2ehh_A 50 LTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE-VDIP 128 (294)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 46799999888888888889999986654321 00000 0122333322 334555444432211 1235
Q ss_pred EEEEEcCC---CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKNI---LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+-. ..-..+++.+|-+++ +.+.-|.+|+-
T Consensus 129 iilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKds~g 165 (294)
T 2ehh_A 129 IIIYNIPSRTCVEISVDTMFKLASEC---ENIVASKESTP 165 (294)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred EEEEeCCcccCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 78776421 222335677776444 44666666653
No 143
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=24.71 E-value=81 Score=20.28 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=31.6
Q ss_pred CCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCC
Q 033381 43 PDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNI 84 (120)
Q Consensus 43 p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~ 84 (120)
|...+.+..|.++.++.|+...--++.++++++ --|.-|++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~-~~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSE-YDLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGG-CEEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhh-CeEEeCCE
Confidence 345678899999999999999999999998764 33434444
No 144
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.37 E-value=53 Score=24.75 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAER 39 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~ 39 (120)
-|.|||.+-.+...+.-..++|||+--..+
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKDQIALIAQVGSV 83 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 467999998888888888999999866543
No 145
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=24.25 E-value=51 Score=25.06 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAER 39 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~ 39 (120)
-|.|||.+-.+...+.-..++|||+--..+
T Consensus 66 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 95 (304)
T 3cpr_A 66 TTAAEKLELLKAVREEVGDRAKLIAGVGTN 95 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEecCCCC
Confidence 467999998888888888999999966543
No 146
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=23.72 E-value=55 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||++-.+...+.-..++|||+--..
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 62 LTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 46799999888888888899999996654
No 147
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.64 E-value=53 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 61 Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 61 QSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999996544
No 148
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.62 E-value=41 Score=25.58 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-..++|||+--..++. +-.+. .--.++|+-. +-.+++.+.+.=..-. .-.
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lP 132 (300)
T 3eb2_A 54 LGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EIP 132 (300)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SSC
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CCC
Confidence 46799999999998888899999996644321 00000 0112333322 3445555554322211 245
Q ss_pred EEEEEcCC---CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKNI---LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+-. ..-..+++.+|- + .+.+.-|.+++-
T Consensus 133 iilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 168 (300)
T 3eb2_A 133 VVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDAST 168 (300)
T ss_dssp EEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSS
T ss_pred EEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCC
Confidence 88886522 222235777772 2 356888888764
No 149
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=23.53 E-value=85 Score=28.31 Aligned_cols=51 Identities=8% Similarity=0.230 Sum_probs=35.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCc----eEEEEEcCCCC------CccchHHHHHhHcc
Q 033381 49 KYLVPADLTVGQFVYVVRKRIKLSAEK----AIFIFVKNILP------PTAAMMSAIYEENK 100 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~----slfl~Vn~~lp------~~~~~m~~lY~~~k 100 (120)
++-|+.++|+.+|+..+++++++.... .--||. ..+| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~ly~-~~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYA-SFFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTEEEEE-TTCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCcEEEe-cCCCchhhHHhccCCHHHHHHhhc
Confidence 567877999999999999998875331 011232 2334 35678999998753
No 150
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.40 E-value=65 Score=24.60 Aligned_cols=98 Identities=8% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc--cceEEecCCC---chHhHHHHHHHHhCCCCCc
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID--KKKYLVPADL---TVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~--k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~ 75 (120)
-|.|||++-.+...+.-..++|||+--..++. +-.+. .--.++|+-. +-.++..+.+.=..- ..-
T Consensus 57 Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~l 135 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SDL 135 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCC
Confidence 46799999999999998999999996544321 11111 1123344322 334555555433221 134
Q ss_pred eEEEEEcC---CCCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 76 AIFIFVKN---ILPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 76 slfl~Vn~---~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.++||=+- ...-..+++.+|-+ .+.+.-|.+|+
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~----~pnIvgiKdss 171 (311)
T 3h5d_A 136 PIIIYNIPGRVVVELTPETMLRLAD----HPNIIGVKECT 171 (311)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHHT----STTEEEEEECS
T ss_pred CEEEEecccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 68888541 12222345666653 25577777776
No 151
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.35 E-value=46 Score=19.60 Aligned_cols=26 Identities=12% Similarity=0.405 Sum_probs=14.7
Q ss_pred cchHHHHHhHccC---------CCCeEEEEecCcc
Q 033381 89 AAMMSAIYEENKD---------EDGFLYMTYSGEN 114 (120)
Q Consensus 89 ~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (120)
.+.|.+++..|.. .-||-+|.|.+.+
T Consensus 19 e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 19 EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 3456666666632 2467777776543
No 152
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=23.29 E-value=51 Score=24.82 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||.+-.+...+.-.+++|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 51 MTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999888888888889999986654
No 153
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=23.00 E-value=59 Score=24.62 Aligned_cols=100 Identities=5% Similarity=0.027 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhCCC-eeeEEEEecCCCC---------CCCCc-cceEEecCC---CchHhHHHHHHHHhCCCCCc
Q 033381 10 HPLERRQAESARIREKYPD-RIPVIVEKAERSD---------IPDID-KKKYLVPAD---LTVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~-~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~ 75 (120)
-|.|||.+-.+...+.-.. ++|||+--..++. +-.+. .--.++|+- .+-.++..+.+.=..-. .-
T Consensus 57 Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 135 (301)
T 3m5v_A 57 LTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV-DI 135 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CC
Confidence 4679999999998888888 9999996543321 00000 011233322 13344444444322111 33
Q ss_pred eEEEEEcC--C-CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 76 AIFIFVKN--I-LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 76 slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
.++||=+- + ..-..+++.+|-+.+ +.+.-|.+|+-
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKdssg 173 (301)
T 3m5v_A 136 PVLLYNVPGRTGCEISTDTIIKLFRDC---ENIYGVKEASG 173 (301)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECSS
T ss_pred CEEEEeCchhhCcCCCHHHHHHHHhcC---CCEEEEEeCCC
Confidence 58888541 1 222334677776543 34667777653
No 154
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=22.90 E-value=57 Score=25.20 Aligned_cols=100 Identities=7% Similarity=-0.012 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCc----------cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSDIPDID----------KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~----------k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||++-.+...+.-.+++|||+--..++..-.++ .--.++|.-. +-.++..+.+.=..- ..-.
T Consensus 84 Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a-~~lP 162 (332)
T 2r8w_A 84 LTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGA-TALP 162 (332)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHH-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 4679999999988888889999999665432100000 0112233322 334455444432211 1235
Q ss_pred EEEEEcC--C-CCCccchHHHHHhHccCCCCeEEEEecCcc
Q 033381 77 IFIFVKN--I-LPPTAAMMSAIYEENKDEDGFLYMTYSGEN 114 (120)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 114 (120)
++||=+- + ..-..+++.+|-+ .+.+.-|.+++-+
T Consensus 163 iilYn~P~~tg~~l~~e~~~~La~----~pnIvgiKdssgd 199 (332)
T 2r8w_A 163 LAIYNNPTTTRFTFSDELLVRLAY----IPNIRAIKMPLPA 199 (332)
T ss_dssp EEEECCHHHHCCCCCHHHHHHHHT----STTEEEEEECCCT
T ss_pred EEEEeCccccCcCCCHHHHHHHHc----CCCEEEEEeCCCC
Confidence 7777531 1 2223356777753 2557777777643
No 155
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.88 E-value=52 Score=25.22 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999988888899999996544
No 156
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.88 E-value=52 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 9 EHPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999988888899999996543
No 157
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=22.83 E-value=49 Score=20.73 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=27.8
Q ss_pred eEEecCCCchHhHHHHHHHHhC-CC---------CCceEEEEEcCCCCCccc
Q 033381 49 KYLVPADLTVGQFVYVVRKRIK-LS---------AEKAIFIFVKNILPPTAA 90 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~-l~---------~~~slfl~Vn~~lp~~~~ 90 (120)
.+-++...|+++++..|..+.. +. ....+-++||+.....+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 3456788999999999876631 11 124577899987544443
No 158
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.78 E-value=52 Score=25.09 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC------chHhHHHHHHHHhCCCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL------TVGQFVYVVRKRIKLSA 73 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~------tv~~~~~~lRk~L~l~~ 73 (120)
-|.|||.+-.+...+.-..++|||+--..++. +-.+. .--.++|+-. +-.++..+.+.=..- .
T Consensus 58 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a-~ 136 (309)
T 3fkr_A 58 ITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA-I 136 (309)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH-C
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHh-c
Confidence 46799999999888888899999997654321 00000 1122333321 344555544432211 1
Q ss_pred CceEEEEEcCC--CCCccchHHHHHhHccCCCCeEEEEe
Q 033381 74 EKAIFIFVKNI--LPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 74 ~~slfl~Vn~~--lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
+-.++||=+-. ..-..+++.+|-+++ +++..|.+
T Consensus 137 ~lPiilYn~P~tg~~l~~~~~~~La~~~---pnIvgiK~ 172 (309)
T 3fkr_A 137 AIPIMVQDAPASGTALSAPFLARMAREI---EQVAYFXI 172 (309)
T ss_dssp SSCEEEEECGGGCCCCCHHHHHHHHHHS---TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHhhC---CCEEEEEC
Confidence 23478775421 112235777887655 34666665
No 159
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.63 E-value=53 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 51 LSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 46799999999998888899999996544
No 160
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=22.49 E-value=1.1e+02 Score=19.76 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=38.4
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHH
Q 033381 47 KKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAI 95 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (120)
-..|.|..+..+..++...-+|.+++.+.-.|||=+..+ +.++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 456899999999999999999999999988888755544 445555555
No 161
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.45 E-value=54 Score=24.68 Aligned_cols=98 Identities=7% Similarity=-0.004 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCccc-eEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDIDKK-KYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~k~-Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-.+++|||+--..++. +-.+.=. -.++|+-. +-.++..+.+.=..- ..-.
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lP 129 (292)
T 2ojp_A 51 LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH-TDLP 129 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTT-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 46799999888888888889999986654321 1111111 22334332 445555555543321 1345
Q ss_pred EEEEEcC--C-CCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 77 IFIFVKN--I-LPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
++||=+- + ..-..+++.+|-+ + +.+.-|.+|+
T Consensus 130 iilYn~P~~tg~~l~~~~~~~La~-~---pnivgiK~s~ 164 (292)
T 2ojp_A 130 QILYNVPSRTGCDLLPETVGRLAK-V---KNIIGIXEAT 164 (292)
T ss_dssp EEEECCHHHHSCCCCHHHHHHHHT-S---TTEEEC-CCS
T ss_pred EEEEeCcchhccCCCHHHHHHHHc-C---CCEEEEeCCC
Confidence 7777531 1 2222345666642 2 3455555544
No 162
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=22.35 E-value=1.6e+02 Score=22.19 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=38.0
Q ss_pred ccceE-EecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCccchHHHHHhHccC-CCCeEEEEecCc
Q 033381 46 DKKKY-LVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 46 ~k~Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
+..-| .=..+++..+|...++..-+-.++. +.|++. .+.++|++..+ -|..|+++.|+.
T Consensus 35 ~~~~y~~D~~di~~~efy~~~~~~~~~~p~T--------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 35 DGETYYRDGVDITRDECYQRMVDDPKLFPKT--------SLPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSCEEEBTTTBCHHHHHHHHHHCTTCCCEE--------ECCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCCCcee--------cCCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 44556 5556889999999887631111221 234443 67788888754 378999998874
No 163
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.01 E-value=68 Score=24.19 Aligned_cols=101 Identities=9% Similarity=0.025 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCC----CchHhHHHHHHHHhCCCC--
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPAD----LTVGQFVYVVRKRIKLSA-- 73 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~----~tv~~~~~~lRk~L~l~~-- 73 (120)
-|.|||.+-.+...+.-..++|||+--...+. +-.+. .--.++|.- .+-.++..+.+.=..-.+
T Consensus 53 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~ 132 (294)
T 3b4u_A 53 VGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKD 132 (294)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999888899999987654321 00000 011222222 133445544443221111
Q ss_pred CceEEEEEcC--C-CCCccchHHHHHhHccCCCC-eEEEEecCc
Q 033381 74 EKAIFIFVKN--I-LPPTAAMMSAIYEENKDEDG-FLYMTYSGE 113 (120)
Q Consensus 74 ~~slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DG-fLyi~Ys~~ 113 (120)
.-.++||=+- + ..-..+++.+|-+++ +. +.-|.+++-
T Consensus 133 ~lPiilYn~P~~tg~~l~~~~~~~La~~~---pn~ivgiKds~g 173 (294)
T 3b4u_A 133 ARDILVYNIPSVTMVTLSVELVGRLKAAF---PGIVTGVKDSSG 173 (294)
T ss_dssp CCCEEEEECHHHHSCCCCHHHHHHHHHHC---TTTEEEEEECCC
T ss_pred CCcEEEEECcchhCcCCCHHHHHHHHHhC---CCcEEEEEECCC
Confidence 2357887642 1 223345788886444 44 777777653
No 164
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.94 E-value=56 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~ 38 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 52 Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 80 (292)
T 3daq_A 52 LTTDEKELILKTVIDLVDKRVPVIAGTGT 80 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999998888888899999996543
No 165
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=21.64 E-value=60 Score=25.73 Aligned_cols=96 Identities=5% Similarity=-0.002 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC--C-------CCCc-cceEEecCC---CchHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD--I-------PDID-KKKYLVPAD---LTVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~--~-------p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-..++|||+--..++. + -.+. .--.++|.- .+-.++..+.+.=.. .-.
T Consensus 109 Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~---a~P 185 (360)
T 4dpp_A 109 MSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLH---MGP 185 (360)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGG---GSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH---hCC
Confidence 46799999898888888999999996543321 0 0000 011233332 144555555543322 136
Q ss_pred EEEEEcC--C-CCCccchHHHHHhHccCCCCeEEEEecC
Q 033381 77 IFIFVKN--I-LPPTAAMMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (120)
+++|=+- + ..-..+++.+|- + .+.+.-|.+|+
T Consensus 186 iilYNiP~rTg~~ls~e~l~~La-~---~pnIvGIKdss 220 (360)
T 4dpp_A 186 TIIYNVPGRTGQDIPPRAIFKLS-Q---NPNLAGVKECV 220 (360)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHT-T---STTEEEEEECS
T ss_pred EEEEeCCcccCCCCCHHHHHHHh-c---CCCEEEEEeCC
Confidence 8887541 1 222235677774 2 35577777765
No 166
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.63 E-value=78 Score=24.09 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCCC--chHhHHHHHHHHhC-CCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPADL--TVGQFVYVVRKRIK-LSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~~--tv~~~~~~lRk~L~-l~~~~s 76 (120)
-|.|||.+-.+...+.- .++|||+--..++. +-.+. .--.++|.-. +-.+++.+.+.=.. .+++-.
T Consensus 58 Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lP 136 (313)
T 3dz1_A 58 LDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVP 136 (313)
T ss_dssp SCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSC
T ss_pred CCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 46799999999999888 99999996543321 00000 0011222211 33444444443221 112245
Q ss_pred EEEEEcC---CCCCccchHHHHHhHccCCCCeEEEEe
Q 033381 77 IFIFVKN---ILPPTAAMMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 77 lfl~Vn~---~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (120)
++||=+- ...-..+++.+|-+++ +.+.-|.+
T Consensus 137 iilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKd 170 (313)
T 3dz1_A 137 WVLQDYPLTLSVVMTPKVIRQIVMDS---ASCVMLKH 170 (313)
T ss_dssp EEEEECHHHHCCCCCHHHHHHHHHHC---SSEEEEEE
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEc
Confidence 8888541 1222235788887665 44777777
No 167
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=1.1e+02 Score=18.15 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=5.4
Q ss_pred chHHHHHhHcc
Q 033381 90 AMMSAIYEENK 100 (120)
Q Consensus 90 ~~m~~lY~~~k 100 (120)
+.|.+++..|.
T Consensus 24 ~~l~~~F~~~G 34 (99)
T 2div_A 24 NFISRAFATMG 34 (99)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 34555555554
No 168
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=21.46 E-value=37 Score=20.71 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=27.0
Q ss_pred eEEecCCCchHhHHHHHHHHhC------CCCC----ceEEEEEcCCCCCcc
Q 033381 49 KYLVPADLTVGQFVYVVRKRIK------LSAE----KAIFIFVKNILPPTA 89 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~------l~~~----~slfl~Vn~~lp~~~ 89 (120)
.+-+|...|+++++..|..+.. +..+ ..+-++||+.....+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~ 71 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG 71 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC
Confidence 3456778899999999987642 2211 236788998654433
No 169
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=1.2e+02 Score=18.09 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=9.0
Q ss_pred ecCCCchHhHHHHHHHH
Q 033381 52 VPADLTVGQFVYVVRKR 68 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~ 68 (120)
+|.+.|-.++..++.+.
T Consensus 27 L~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 27 LPRDARVSDLKRALREL 43 (97)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhc
Confidence 45555555555555443
No 170
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.42 E-value=58 Score=24.69 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAER 39 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~ 39 (120)
-|.|||.+-.+...+.-..++|||+--..+
T Consensus 62 Ls~eEr~~v~~~~~~~~~grvpViaGvg~~ 91 (301)
T 1xky_A 62 LTSEEKVALYRHVVSVVDKRVPVIAGTGSN 91 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEeCCCCC
Confidence 467999998888888888999999866543
No 171
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.23 E-value=48 Score=25.41 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc-cceEEecCC---CchHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSD---------IPDID-KKKYLVPAD---LTVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||++-.+...+.-..++|||+--..++. +-.+. .--.++|+- .+-.+++.+.+.=..-. .-.
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 152 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI-GVP 152 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCc
Confidence 46799999999999888899999996543321 00000 011223222 13344544444322111 235
Q ss_pred EEEEEcCC---CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKNI---LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+-. ..-..+++.+|-.++ +.+.-|.+++-
T Consensus 153 iilYn~P~~tg~~l~~~~~~~L~a~~---pnIvgiKdssg 189 (315)
T 3na8_A 153 VMLYNNPGTSGIDMSVELILRIVREV---DNVTMVKESTG 189 (315)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHS---TTEEEEEECSS
T ss_pred EEEEeCcchhCcCCCHHHHHHHHhcC---CCEEEEECCCC
Confidence 88886421 222235778885555 45777777764
No 172
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.12 E-value=1.3e+02 Score=18.40 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=7.1
Q ss_pred CCeEEEEecCcc
Q 033381 103 DGFLYMTYSGEN 114 (120)
Q Consensus 103 DGfLyi~Ys~~~ 114 (120)
-||-+|.|.+.+
T Consensus 67 ~g~afV~f~~~~ 78 (114)
T 2cq4_A 67 KGIAYVEFCEIQ 78 (114)
T ss_dssp CCCEEEEESCGG
T ss_pred CcEEEEEeCcHH
Confidence 356666666543
No 173
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=21.05 E-value=60 Score=24.69 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCc----------cceEEecCCC---chHhHHHHHHHHhCCCCCce
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAERSDIPDID----------KKKYLVPADL---TVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~----------k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (120)
-|.|||.+-.+...+.-..++|||+--..++..-.++ .--.++|+-. +-.++..+.+.=.. ...-.
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~-a~~lP 140 (306)
T 1o5k_A 62 VNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISE-RTDLG 140 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHT-TCSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH-hCCCC
Confidence 4679999988888888888999998665432100000 0122333322 44555555554332 11346
Q ss_pred EEEEEcCC---CCCccchHHHHHhHccCCCCeEEEEecCc
Q 033381 77 IFIFVKNI---LPPTAAMMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+-. ..-..+++.+|-+++ +.+.-|.+|+-
T Consensus 141 iilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKdssg 177 (306)
T 1o5k_A 141 IVVYNVPGRTGVNVLPETAARIAADL---KNVVGIXEANP 177 (306)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCC
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEeCCCC
Confidence 88876421 222345677776444 45666776653
No 174
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.99 E-value=98 Score=18.64 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCeeeEEEEecCCCC---CCCCccceEEecCCCchHhHHHHHHHHhCCC
Q 033381 17 AESARIREKYPDRIPVIVEKAERSD---IPDIDKKKYLVPADLTVGQFVYVVRKRIKLS 72 (120)
Q Consensus 17 ~e~~~i~~k~P~~ipVIvE~~~~~~---~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~ 72 (120)
.-...+++.+| .+|||+=...... ...++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34667777766 6787774433211 0011111 25666778888888888776543
No 175
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=20.92 E-value=1.3e+02 Score=19.55 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=22.8
Q ss_pred EEEcCCCCC-ccchHHHHHhHccC---------CCCeEEEEecCcc
Q 033381 79 IFVKNILPP-TAAMMSAIYEENKD---------EDGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~lp~-~~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (120)
|||+|--+. .+..|.+++..|.. .-||-+|.|.+.+
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 456664332 44568888888743 2578888887654
No 176
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.43 E-value=52 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033381 10 HPLERRQAESARIREKYPDRIPVIVEKAER 39 (120)
Q Consensus 10 ~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~ 39 (120)
-|.|||.+-.+...+.-.+++|||+--..+
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 79 (297)
T 2rfg_A 50 LTEEEHKRVVALVAEQAQGRVPVIAGAGSN 79 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEccCCC
Confidence 467999998888888888899999866543
No 177
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=20.33 E-value=2.2e+02 Score=21.14 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=38.8
Q ss_pred HhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCc--eEEEEEcC-C--CCCccchHHH
Q 033381 24 EKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEK--AIFIFVKN-I--LPPTAAMMSA 94 (120)
Q Consensus 24 ~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~--slfl~Vn~-~--lp~~~~~m~~ 94 (120)
+..+..+.+.|--- +=....+.|.+..|+.++...|.++|+|...+ +|++.-++ . ...++..+.+
T Consensus 12 ~~~~~~~~~~V~ll------dgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~ 81 (296)
T 3qij_A 12 ENLYFQGHCKVSLL------DDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKK 81 (296)
T ss_dssp -----CCEEEEECT------TSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHH
T ss_pred CCCCceEEEEEEcc------CCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHH
Confidence 33445556655322 11234588999999999999999999999876 55533332 1 2444555543
Done!