BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033383
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS++ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICA 113
FA+ +TFGN+ ++GST F++GP +Q+ MF+ R+ AT + L+C + L A
Sbjct: 62 LHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSA 116
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1
Length = 159
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS+ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115
FA+ +T GN++++GST F++GP +Q+ MF+ R+ AT + L+C + L A L
Sbjct: 62 LGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLCSAFL 118
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1
Length = 159
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KL+++++G ++ E+ D SLS+ R+ F C +AG+ FL + P
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGM 61
Query: 62 --FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT + L+C+V L AL
Sbjct: 62 KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAAL 116
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
KL+++++G ++ E+ D SLS+ R+ F C +AG+ L + P +
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGV 61
Query: 61 K-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
K FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT + L+C+V L AL
Sbjct: 62 KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAAL 116
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
KL+++++G ++ E+ D SLS+ R+ FA C + G+ L + P I
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGI 61
Query: 61 K-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
K FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT V L+C + L AL
Sbjct: 62 KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAAL 116
>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2
SV=1
Length = 157
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF--VRPI 60
KLK++++G + + S L + + SLS++ R+ F C G++C L ++ R
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVE-SSSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKG 61
Query: 61 KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYAT 99
FA+ +T GN+ ++GST F++GP +Q+ MF+ R+ AT
Sbjct: 62 LFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIAT 100
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 28 SLSYTQRMYAFAACLLAGLVCM----FLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGP 83
SLS +R F CLL L C F+ ++ ++P KF +L+T G+LLAV A V G
Sbjct: 61 SLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFAIVQGF 120
Query: 84 AQQINMMFDSARIYATTVYLVCVVIALICAL 114
+ R+ T Y V ++ +I +
Sbjct: 121 VAHFRQLTTMERLPITLSYFVTLLATIIATI 151
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 15 EESFLEDESDGICSLSYTQRMYAFAACLLAG-----LVCMFLSIIVFVRPIKFAILFTFG 69
+ ++D+ LS T+RM F C L G +C FL ++ +P KF +L+T G
Sbjct: 61 RQDLVQDQEPSWFQLSRTERMVLFV-CFLLGATACFTLCTFLFPVLAAKPRKFGLLWTMG 119
Query: 70 NLLAVGSTAFVIGPAQQINMMFDSARI------YAT---TVYLVC----VVIALICALL 115
+LL V + ++GP + + R+ +AT T+Y V+ + CALL
Sbjct: 120 SLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITCALL 178
>sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
Length = 138
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 65 LFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118
L GN+L V AFVIG + F ++ AT +L V + LI L+ +
Sbjct: 34 LLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLIGM 87
>sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1
Length = 138
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 65 LFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118
L GN+L V AFVIG + F ++ AT +L V + LI L+ +
Sbjct: 34 LLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGM 87
>sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1
Length = 138
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 65 LFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118
L GN+L V AFVIG + F ++ AT +L V + LI L+ +
Sbjct: 34 LLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGM 87
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 63 AILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI 111
++L FGNLL + + +IG + + F + T+ +L VVI L+
Sbjct: 32 SVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLGGVVIVLL 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,182,684
Number of Sequences: 539616
Number of extensions: 1264891
Number of successful extensions: 3782
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3753
Number of HSP's gapped (non-prelim): 27
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)