Query 033383
Match_columns 120
No_of_seqs 116 out of 371
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 13:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 100.0 1.3E-35 2.7E-40 223.9 10.2 119 1-119 1-134 (175)
2 PF04178 Got1: Got1/Sft2-like 99.9 2.6E-23 5.7E-28 148.4 9.6 80 39-119 4-83 (118)
3 COG5102 SFT2 Membrane protein 99.8 6.4E-21 1.4E-25 144.4 8.0 96 24-119 57-156 (201)
4 KOG1743 Ferric reductase-like 97.7 2.7E-05 5.9E-10 57.0 2.7 75 33-111 5-79 (137)
5 COG5120 GOT1 Membrane protein 96.9 0.0016 3.5E-08 46.9 4.2 69 39-111 11-79 (129)
6 PF11026 DUF2721: Protein of u 86.0 1.4 3E-05 31.7 4.1 58 23-80 49-115 (130)
7 PRK11588 hypothetical protein; 78.0 30 0.00065 30.6 10.0 33 73-105 352-389 (506)
8 PF14145 YrhK: YrhK-like prote 71.7 22 0.00048 22.3 6.0 44 40-87 10-54 (59)
9 PF04156 IncA: IncA protein; 71.1 31 0.00067 25.5 7.4 25 30-55 1-25 (191)
10 PF05915 DUF872: Eukaryotic pr 59.4 44 0.00096 23.7 6.0 24 35-58 44-67 (115)
11 PRK10019 nickel/cobalt efflux 58.4 1E+02 0.0022 25.2 10.1 55 59-113 211-267 (279)
12 PF13038 DUF3899: Domain of un 53.6 15 0.00032 24.4 2.6 11 43-53 77-87 (92)
13 TIGR01666 YCCS hypothetical me 52.8 1.6E+02 0.0034 27.1 9.7 37 30-66 52-88 (704)
14 PF11368 DUF3169: Protein of u 50.8 46 0.00099 26.0 5.4 9 43-51 111-119 (248)
15 PF14181 YqfQ: YqfQ-like prote 48.4 5.7 0.00012 30.0 -0.1 14 1-14 88-102 (161)
16 PF11023 DUF2614: Protein of u 47.5 97 0.0021 22.3 6.1 19 59-77 36-54 (114)
17 PF06738 DUF1212: Protein of u 43.7 1.3E+02 0.0028 22.1 7.2 31 9-39 80-111 (193)
18 TIGR00054 RIP metalloprotease 43.6 34 0.00074 28.9 3.9 17 22-38 84-100 (420)
19 PHA02692 hypothetical protein; 43.3 42 0.0009 22.2 3.4 21 28-48 42-62 (70)
20 PF09323 DUF1980: Domain of un 39.1 1.6E+02 0.0035 21.9 8.0 47 37-83 3-53 (182)
21 PF08566 Pam17: Mitochondrial 38.8 53 0.0012 25.2 3.9 55 26-84 30-97 (173)
22 PRK12585 putative monovalent c 37.7 2E+02 0.0042 22.6 6.9 42 38-79 9-57 (197)
23 PF13131 DUF3951: Protein of u 35.5 50 0.0011 20.6 2.7 23 64-86 2-24 (53)
24 PF03248 Rer1: Rer1 family; I 35.1 1.6E+02 0.0035 22.6 6.0 18 81-98 149-166 (176)
25 PF09925 DUF2157: Predicted me 34.9 1.7E+02 0.0036 20.8 11.0 39 39-77 34-80 (145)
26 PF10754 DUF2569: Protein of u 34.2 1.8E+02 0.0039 21.0 7.4 23 32-54 4-26 (149)
27 PF03729 DUF308: Short repeat 33.7 1.1E+02 0.0023 18.3 8.4 19 44-62 2-20 (72)
28 PF06210 DUF1003: Protein of u 32.7 1.3E+02 0.0028 21.1 4.8 33 57-89 30-63 (108)
29 KOG1688 Golgi proteins involve 32.6 2.3E+02 0.005 22.0 6.5 53 36-98 121-175 (188)
30 TIGR00378 cax calcium/proton e 32.6 41 0.00089 27.8 2.6 27 68-94 89-115 (349)
31 KOG3882 Tetraspanin family int 31.3 1.7E+02 0.0037 22.1 5.7 30 61-90 52-81 (237)
32 PF13150 DUF3989: Protein of u 30.7 1.1E+02 0.0023 20.7 4.0 18 26-43 19-36 (85)
33 PF07664 FeoB_C: Ferrous iron 30.6 59 0.0013 19.6 2.5 20 99-118 3-22 (54)
34 PF11023 DUF2614: Protein of u 30.0 2.1E+02 0.0046 20.6 6.5 46 59-115 11-56 (114)
35 PRK12675 putative monovalent c 29.3 2E+02 0.0044 20.0 5.4 44 39-82 4-54 (104)
36 PF14851 FAM176: FAM176 family 29.3 1.8E+02 0.0039 21.8 5.4 38 50-87 8-47 (153)
37 PF02990 EMP70: Endomembrane p 29.2 1.7E+02 0.0037 25.5 6.0 67 35-102 261-335 (521)
38 PRK09776 putative diguanylate 27.6 3.2E+02 0.007 25.0 7.7 23 55-77 63-85 (1092)
39 KOG3393 Predicted membrane pro 26.3 2.9E+02 0.0062 20.9 5.9 54 27-81 85-147 (157)
40 KOG1397 Ca2+/H+ antiporter VCX 26.2 1E+02 0.0022 27.0 3.9 18 23-40 280-297 (441)
41 COG1288 Predicted membrane pro 25.9 4.7E+02 0.01 23.2 9.0 77 27-105 269-367 (481)
42 KOG2592 Tumor differentially e 25.3 1E+02 0.0023 26.8 3.8 32 38-69 79-125 (426)
43 PF03606 DcuC: C4-dicarboxylat 24.5 3E+02 0.0066 23.6 6.6 22 29-52 249-270 (465)
44 PRK12586 putative monovalent c 24.3 2.1E+02 0.0045 21.3 4.8 46 38-83 12-64 (145)
45 PF07787 DUF1625: Protein of u 23.9 2.5E+02 0.0055 21.8 5.6 64 16-79 169-241 (248)
46 PF09622 DUF2391: Putative int 23.5 3.5E+02 0.0077 22.0 6.4 18 96-113 214-231 (267)
47 TIGR01667 YCCS_YHJK integral m 22.7 6E+02 0.013 23.3 9.5 31 30-60 52-82 (701)
48 KOG1623 Multitransmembrane pro 22.1 86 0.0019 25.2 2.6 51 64-115 124-174 (243)
49 PF03381 CDC50: LEM3 (ligand-e 21.7 65 0.0014 25.9 1.9 26 37-62 245-274 (278)
50 PF03839 Sec62: Translocation 21.0 4.1E+02 0.0088 21.0 6.2 16 28-43 106-121 (224)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=223.92 Aligned_cols=119 Identities=43% Similarity=0.717 Sum_probs=102.2
Q ss_pred Ccccc-------ccccCCchh---hhhhc-cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHH
Q 033383 1 MWKLK-------QLVAGDEER---EESFL-EDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPIKFAIL 65 (120)
Q Consensus 1 ~~~~~-------~~~g~~~~~---~~~~~-~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l~----~p~kFa~l 65 (120)
|||++ .++|+|..| |+.+. .+.+++.++|||+||+++|++|++.|++|+.++.+++. .|+|||++
T Consensus 1 md~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~~kFal~ 80 (175)
T KOG2887|consen 1 MDKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSPRKFALL 80 (175)
T ss_pred CchhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeehh
Confidence 67876 445655333 22222 33345579999999999999999999999999998764 57799999
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHhhccC
Q 033383 66 FTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119 (120)
Q Consensus 66 ~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~~ks~ 119 (120)
||+||+++++|++||+||++|+|||++|+|+++|+.|++++++|||+|+++||+
T Consensus 81 ~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~ 134 (175)
T KOG2887|consen 81 YTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSK 134 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985
No 2
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.90 E-value=2.6e-23 Score=148.37 Aligned_cols=80 Identities=36% Similarity=0.754 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHhhcc
Q 033383 39 AACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118 (120)
Q Consensus 39 ~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~~ks 118 (120)
++|+.+|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|+|++|+|+++|++|++|+++|+|+++++|+
T Consensus 4 ~~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~ 82 (118)
T PF04178_consen 4 IICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKS 82 (118)
T ss_pred hHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45777777777777655 89999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 033383 119 K 119 (120)
Q Consensus 119 ~ 119 (120)
.
T Consensus 83 ~ 83 (118)
T PF04178_consen 83 Y 83 (118)
T ss_pred H
Confidence 4
No 3
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.84 E-value=6.4e-21 Score=144.37 Aligned_cols=96 Identities=23% Similarity=0.370 Sum_probs=86.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHH
Q 033383 24 DGICSLSYTQRMYAFAACLLAGLVCMFLSII----VFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYAT 99 (120)
Q Consensus 24 ~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~----~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t 99 (120)
.+.++||++||...|.+|+..+..|+.++.. +.++|+||.++||+||++++.+++++.||.+|+|+++++||+|.+
T Consensus 57 ~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s 136 (201)
T COG5102 57 SSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHS 136 (201)
T ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchh
Confidence 4478999999999999997777777755544 347899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 033383 100 TVYLVCVVIALICALLVSLK 119 (120)
Q Consensus 100 ~~y~~sl~lTL~~al~~ks~ 119 (120)
..|+++..+|+|+++..|++
T Consensus 137 ~~ff~t~l~Tiy~~~k~k~t 156 (201)
T COG5102 137 SWFFGTTLLTIYVVLKYKRT 156 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999988875
No 4
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.7e-05 Score=57.03 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHH
Q 033383 33 QRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI 111 (120)
Q Consensus 33 qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~ 111 (120)
++-+..++..+.|.++++++.+++++- .+-++||++++.+..+..|.++.+...++++|.-.|+.|.+...++++
T Consensus 5 d~kkiGvg~TgfG~ff~l~Gii~ffD~----aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~ 79 (137)
T KOG1743|consen 5 DLKKIGVGLTGFGVFFFLFGIILFFDK----ALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLF 79 (137)
T ss_pred hhhHhCeEEechhHHHHHHHHHHHHhh----HHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHH
Confidence 444456777889999999999988877 678889999999999999999999999999999999999999988876
No 5
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.0016 Score=46.94 Aligned_cols=69 Identities=17% Similarity=0.413 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHH
Q 033383 39 AACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI 111 (120)
Q Consensus 39 ~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~ 111 (120)
++...+|.+++.++.+++++. .+-++||++.+.+...+.|.++-+-...+|+|+..++.|.....+++|
T Consensus 11 V~~t~~Gflffl~Gif~ffDr----aLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~ 79 (129)
T COG5120 11 VVVTSIGFLFFLVGIFLFFDR----ALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLY 79 (129)
T ss_pred eEEeehhHHHHHHHHHHHhhh----HHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHH
Confidence 344567888888888877765 577889999999999999999888888999999999999999999987
No 6
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=86.04 E-value=1.4 Score=31.70 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=31.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHh
Q 033383 23 SDGICSLSYTQRMYAFAACLL-AGLVCMFLSIIVFV--------RPIKFAILFTFGNLLAVGSTAFV 80 (120)
Q Consensus 23 ~~~~~~LS~~qRi~gF~~c~~-~g~~~~~ls~~~l~--------~p~kFa~l~tlGsil~l~s~~fL 80 (120)
..+...|.++-|++...+.+. ++.++..+..+.++ .+.--+++|..|-++.++|...+
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777766655333 44444444443222 23345566666666666665544
No 7
>PRK11588 hypothetical protein; Provisional
Probab=77.97 E-value=30 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHhhcHHHHHHhhc-----cCcchHHHHHHHHH
Q 033383 73 AVGSTAFVIGPAQQINMMF-----DSARIYATTVYLVC 105 (120)
Q Consensus 73 ~l~s~~fL~Gp~~q~k~m~-----~~~R~~~t~~y~~s 105 (120)
-+.+.+++.|..+++.-++ ++....-|++|..+
T Consensus 352 ~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~ 389 (506)
T PRK11588 352 MMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAG 389 (506)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHH
Confidence 3567788888888888888 66667788877665
No 8
>PF14145 YrhK: YrhK-like protein
Probab=71.75 E-value=22 Score=22.33 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHhhcHHHHH
Q 033383 40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLA-VGSTAFVIGPAQQI 87 (120)
Q Consensus 40 ~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~-l~s~~fL~Gp~~q~ 87 (120)
+.-.+|.+++.++.++++.+. .++.|..++ ++|..|+.+|.-++
T Consensus 10 ~~d~~~~~~FliGSilfl~~~----~~~~g~wlFiiGS~~f~i~~~i~~ 54 (59)
T PF14145_consen 10 VNDFIGGLLFLIGSILFLPES----LYTAGTWLFIIGSILFLIRPIIRL 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667666655442 446666665 55667777776443
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.06 E-value=31 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033383 30 SYTQRMYAFAACLLAGLVCMFLSIIV 55 (120)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~ 55 (120)
|+.+|+. -+++.++|+++...+...
T Consensus 1 s~~~~i~-~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 1 SKKQRII-SIILIILGILLIASGIAA 25 (191)
T ss_pred ChhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4555664 678888888866666553
No 10
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=59.39 E-value=44 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033383 35 MYAFAACLLAGLVCMFLSIIVFVR 58 (120)
Q Consensus 35 i~gF~~c~~~g~~~~~ls~~~l~~ 58 (120)
+..-+.++++|.++.+++.+++..
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555777788888888776543
No 11
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=58.42 E-value=1e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh--cHHHHHHhhccCcchHHHHHHHHHHHHHHHHH
Q 033383 59 PIKFAILFTFGNLLAVGSTAFVI--GPAQQINMMFDSARIYATTVYLVCVVIALICA 113 (120)
Q Consensus 59 p~kFa~l~tlGsil~l~s~~fL~--Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~a 113 (120)
.--+++.|++|..+.+...+.+. +-+.-.++.....|.....-|+.+++.+++-.
T Consensus 211 Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~ 267 (279)
T PRK10019 211 GATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGV 267 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999888886 33334444444666666666766666665544
No 12
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=53.58 E-value=15 Score=24.38 Aligned_cols=11 Identities=55% Similarity=0.872 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 033383 43 LAGLVCMFLSI 53 (120)
Q Consensus 43 ~~g~~~~~ls~ 53 (120)
..|+++.+++.
T Consensus 77 l~~~ll~l~~i 87 (92)
T PF13038_consen 77 LIGLLLILLSI 87 (92)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 13
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=52.76 E-value=1.6e+02 Score=27.10 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 033383 30 SYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILF 66 (120)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~ 66 (120)
+++.|++..+++..++.+-++..-++.-.|.-|+..-
T Consensus 52 ~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l 88 (704)
T TIGR01666 52 RLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGL 88 (704)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5678888877766655544444333333444444433
No 14
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=50.78 E-value=46 Score=25.98 Aligned_cols=9 Identities=11% Similarity=0.700 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 033383 43 LAGLVCMFL 51 (120)
Q Consensus 43 ~~g~~~~~l 51 (120)
++..++.++
T Consensus 111 i~~~~~l~~ 119 (248)
T PF11368_consen 111 IISFLSLFI 119 (248)
T ss_pred HHHHHHHHH
Confidence 333344333
No 15
>PF14181 YqfQ: YqfQ-like protein
Probab=48.42 E-value=5.7 Score=30.04 Aligned_cols=14 Identities=43% Similarity=0.971 Sum_probs=10.0
Q ss_pred Cccc-cccccCCchh
Q 033383 1 MWKL-KQLVAGDEER 14 (120)
Q Consensus 1 ~~~~-~~~~g~~~~~ 14 (120)
|+|| |.+...|+++
T Consensus 88 m~kiyr~l~s~~~~~ 102 (161)
T PF14181_consen 88 MWKIYRGLKSSDDET 102 (161)
T ss_pred HHHHHHccCCCCccc
Confidence 6788 8788777643
No 16
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=47.46 E-value=97 Score=22.30 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 033383 59 PIKFAILFTFGNLLAVGST 77 (120)
Q Consensus 59 p~kFa~l~tlGsil~l~s~ 77 (120)
|.-.++++-+|-+..++|+
T Consensus 36 ~~im~ifmllG~L~~l~S~ 54 (114)
T PF11023_consen 36 PIIMVIFMLLGLLAILAST 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444444
No 17
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=43.68 E-value=1.3e+02 Score=22.09 Aligned_cols=31 Identities=16% Similarity=-0.172 Sum_probs=15.3
Q ss_pred cCCchhhhhhccccccCCC-CCCHHHHHHHHH
Q 033383 9 AGDEEREESFLEDESDGIC-SLSYTQRMYAFA 39 (120)
Q Consensus 9 g~~~~~~~~~~~~~~~~~~-~LS~~qRi~gF~ 39 (120)
|+-..||...+.++.+.-| .-+++.++.++.
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~~~ 111 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLVILAAG 111 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 3433444434455555444 556666555444
No 18
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=43.60 E-value=34 Score=28.92 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=12.6
Q ss_pred cccCCCCCCHHHHHHHH
Q 033383 22 ESDGICSLSYTQRMYAF 38 (120)
Q Consensus 22 ~~~~~~~LS~~qRi~gF 38 (120)
+...+.+-+.+||+...
T Consensus 84 ~~~~f~~~~~~~r~~i~ 100 (420)
T TIGR00054 84 DGDLFNNKSVFQKAIII 100 (420)
T ss_pred hhhhhccCCHHHHHHhh
Confidence 34458899999998643
No 19
>PHA02692 hypothetical protein; Provisional
Probab=43.26 E-value=42 Score=22.19 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 033383 28 SLSYTQRMYAFAACLLAGLVC 48 (120)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~ 48 (120)
+.+|+.-++.|++..++..++
T Consensus 42 ~~~~~~~ii~~~~~~~~~vll 62 (70)
T PHA02692 42 GVPWTTVFLIGLIAAAIGVLL 62 (70)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 455555444444444443333
No 20
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=39.10 E-value=1.6e+02 Score=21.86 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHhhcH
Q 033383 37 AFAACLLAGLVCMFLSII----VFVRPIKFAILFTFGNLLAVGSTAFVIGP 83 (120)
Q Consensus 37 gF~~c~~~g~~~~~ls~~----~l~~p~kFa~l~tlGsil~l~s~~fL~Gp 83 (120)
.++++++.|++++-+-.- ..++|+-...++.-+-++++.+..-+..-
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~ 53 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRW 53 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665554432 45789877777777777776666555443
No 21
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=38.80 E-value=53 Score=25.20 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHhhcHH
Q 033383 26 ICSLSYTQRMYAFAACLLAGLVCMFLSIIVF-------------VRPIKFAILFTFGNLLAVGSTAFVIGPA 84 (120)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l-------------~~p~kFa~l~tlGsil~l~s~~fL~Gp~ 84 (120)
+++|=.++|.+.-+.....|++-..++...+ ++| +..--+..+.-++.++|.||.
T Consensus 30 ffkLRk~rrr~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP----~~~~g~~t~a~g~lG~L~GP~ 97 (173)
T PF08566_consen 30 FFKLRKSRRRINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDP----FMVYGLATLACGALGWLVGPS 97 (173)
T ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCH----HHHHHHHHHHHHHHHHHhcch
Confidence 4566666777766666666666655555422 356 222223445567889999996
No 22
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=37.68 E-value=2e+02 Score=22.62 Aligned_cols=42 Identities=29% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhH------HHHHHHHHHHHHHHHHHHH
Q 033383 38 FAACLLAGLVCMFLSII-VFVRPI------KFAILFTFGNLLAVGSTAF 79 (120)
Q Consensus 38 F~~c~~~g~~~~~ls~~-~l~~p~------kFa~l~tlGsil~l~s~~f 79 (120)
-.+++++|.+++++|.+ ++-.|. .=+..-|+|..+.+++...
T Consensus 9 ~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 9 ISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHH
Confidence 45677788888888876 322233 3345567777777766544
No 23
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=35.53 E-value=50 Score=20.63 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHH
Q 033383 64 ILFTFGNLLAVGSTAFVIGPAQQ 86 (120)
Q Consensus 64 ~l~tlGsil~l~s~~fL~Gp~~q 86 (120)
++.|+|-++.-+-..|+.|..++
T Consensus 2 iL~tiG~~~~~~~I~~lIgfity 24 (53)
T PF13131_consen 2 ILLTIGIILFTIFIFFLIGFITY 24 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 57788988888889999998665
No 24
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=35.05 E-value=1.6e+02 Score=22.58 Aligned_cols=18 Identities=17% Similarity=0.109 Sum_probs=12.4
Q ss_pred hcHHHHHHhhccCcchHH
Q 033383 81 IGPAQQINMMFDSARIYA 98 (120)
Q Consensus 81 ~Gp~~q~k~m~~~~R~~~ 98 (120)
.--++|+|||.+=+=.|+
T Consensus 149 ~tm~~qI~hMiKy~Y~Pf 166 (176)
T PF03248_consen 149 LTMKRQIKHMIKYRYVPF 166 (176)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 344799999987554444
No 25
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=34.95 E-value=1.7e+02 Score=20.84 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHH
Q 033383 39 AACLLAGLVCMFLSIIVFV--------RPIKFAILFTFGNLLAVGST 77 (120)
Q Consensus 39 ~~c~~~g~~~~~ls~~~l~--------~p~kFa~l~tlGsil~l~s~ 77 (120)
-+...+|.++...+.+.++ +..||++....--.....+.
T Consensus 34 ~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~ 80 (145)
T PF09925_consen 34 RILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGF 80 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 33478776666444333333
No 26
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=34.18 E-value=1.8e+02 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033383 32 TQRMYAFAACLLAGLVCMFLSII 54 (120)
Q Consensus 32 ~qRi~gF~~c~~~g~~~~~ls~~ 54 (120)
.||+-|+....++|.+.+.++..
T Consensus 4 ~~~IGGWL~lp~iglils~l~~~ 26 (149)
T PF10754_consen 4 PQGIGGWLILPAIGLILSPLSTS 26 (149)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 37888899988888888777664
No 27
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=33.72 E-value=1.1e+02 Score=18.28 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 033383 44 AGLVCMFLSIIVFVRPIKF 62 (120)
Q Consensus 44 ~g~~~~~ls~~~l~~p~kF 62 (120)
.|++....+...+..|...
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~ 20 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDAS 20 (72)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4667777777777888643
No 28
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.72 E-value=1.3e+02 Score=21.08 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.6
Q ss_pred HhhHHHHHHHHHHHHHH-HHHHHHhhcHHHHHHh
Q 033383 57 VRPIKFAILFTFGNLLA-VGSTAFVIGPAQQINM 89 (120)
Q Consensus 57 ~~p~kFa~l~tlGsil~-l~s~~fL~Gp~~q~k~ 89 (120)
++|..|.++..+-|+.. +.+...+++-.+|=++
T Consensus 30 fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~ 63 (108)
T PF06210_consen 30 FDPYPFILLNLVLSLEAAYQAPLILMSQNRQAAR 63 (108)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 57889999998888765 6778888887766544
No 29
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.62 E-value=2.3e+02 Score=22.00 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHH
Q 033383 36 YAFAACLLAGLVCMFLSII--VFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYA 98 (120)
Q Consensus 36 ~gF~~c~~~g~~~~~ls~~--~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~ 98 (120)
....=++.+|.+|.+.+++ -.+.|-- +.| -.+.|..--++|++||.+-.-.|+
T Consensus 121 ~s~~ka~~ia~~~tfF~~fdVPVFwPIL--l~Y--------~i~lf~ltmrRqI~HMiKyrY~Pf 175 (188)
T KOG1688|consen 121 YSSTKATLIALLCTFFSIFDVPVFWPIL--LMY--------FIVLFFLTMRRQIAHMIKYRYIPF 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhHHH--HHH--------HHHHHHHHHHHHHHHHHhhccccc
Confidence 3444577778888888875 2355521 111 224455567899999987554443
No 30
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=32.61 E-value=41 Score=27.79 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhhccCc
Q 033383 68 FGNLLAVGSTAFVIGPAQQINMMFDSA 94 (120)
Q Consensus 68 lGsil~l~s~~fL~Gp~~q~k~m~~~~ 94 (120)
+.|++.+.+.+++.||.++-++.++++
T Consensus 89 i~NllLilGls~liggl~~~~q~~~~~ 115 (349)
T TIGR00378 89 LGNLLLVLGLCFFFGGLNYKQQTFNQT 115 (349)
T ss_pred HHhHHHHHHHHHHHhccccceeecCHH
Confidence 456667888888888887666665554
No 31
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=31.28 E-value=1.7e+02 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHhh
Q 033383 61 KFAILFTFGNLLAVGSTAFVIGPAQQINMM 90 (120)
Q Consensus 61 kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m 90 (120)
..-++..+|.++++.|+.=..|-.+.=+.+
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~es~~l 81 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALRESRCL 81 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHhhhHHH
Confidence 345566667777777766666665544443
No 32
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=30.68 E-value=1.1e+02 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 033383 26 ICSLSYTQRMYAFAACLL 43 (120)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~ 43 (120)
|-.||.+||+..-++.++
T Consensus 19 c~~Lsp~~R~~vvl~ml~ 36 (85)
T PF13150_consen 19 CGRLSPKQRLRVVLVMLV 36 (85)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 679999999975544443
No 33
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=30.65 E-value=59 Score=19.61 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 033383 99 TTVYLVCVVIALICALLVSL 118 (120)
Q Consensus 99 t~~y~~sl~lTL~~al~~ks 118 (120)
-.+|+.++++.+..|.++++
T Consensus 3 ~~~y~~~~~~~l~~~~il~~ 22 (54)
T PF07664_consen 3 FSLYLLGILVALLVGLILKK 22 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999988874
No 34
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.02 E-value=2.1e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHh
Q 033383 59 PIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 59 p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~ 115 (120)
-|.||++..++.+..+-. | -.++..+++.++.++.++++++.++.+
T Consensus 11 ~R~~al~lif~g~~vmy~-----g------i~f~~~~~im~ifmllG~L~~l~S~~V 56 (114)
T PF11023_consen 11 IRTFALSLIFIGMIVMYI-----G------IFFKASPIIMVIFMLLGLLAILASTAV 56 (114)
T ss_pred HHHHHHHHHHHHHHHHhh-----h------hhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666555443322 2 244577788888888888866655543
No 35
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.29 E-value=2e+02 Score=20.05 Aligned_cols=44 Identities=20% Similarity=0.121 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhhc
Q 033383 39 AACLLAGLVCMFLSIIVFV-------RPIKFAILFTFGNLLAVGSTAFVIG 82 (120)
Q Consensus 39 ~~c~~~g~~~~~ls~~~l~-------~p~kFa~l~tlGsil~l~s~~fL~G 82 (120)
.++..+|.++.+++.+=++ |-+.=+..-|+|..+.+.+.....+
T Consensus 4 ~~lll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~ 54 (104)
T PRK12675 4 LLFLLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASD 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhc
Confidence 4677888888888876222 2224456778999999998887755
No 36
>PF14851 FAM176: FAM176 family
Probab=29.26 E-value=1.8e+02 Score=21.76 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 033383 50 FLSIIVFV--RPIKFAILFTFGNLLAVGSTAFVIGPAQQI 87 (120)
Q Consensus 50 ~ls~~~l~--~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~ 87 (120)
.|+.+..+ .|-+||++|.+|-..-|+=+.++..++--+
T Consensus 8 sLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 8 SLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34444333 699999999999888777777777665444
No 37
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.21 E-value=1.7e+02 Score=25.50 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHhhcHHHH-HHhhccCcchHHHHHH
Q 033383 35 MYAFAACLLAGLVCMFLSIIV-------FVRPIKFAILFTFGNLLAVGSTAFVIGPAQQ-INMMFDSARIYATTVY 102 (120)
Q Consensus 35 i~gF~~c~~~g~~~~~ls~~~-------l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q-~k~m~~~~R~~~t~~y 102 (120)
...+.++.+.|+=+.+++... ...|+.=+.+.|.+-++. +-+++..|..+. +-++++.+||....+.
T Consensus 261 ~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y-~~~~~iaGy~S~~~yk~~~g~~W~~~~~l 335 (521)
T PF02990_consen 261 PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILY-ALTSFIAGYVSARLYKSFGGKKWKKNSIL 335 (521)
T ss_pred chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHH-HHHhhHHHHHHHHHHHHcCCCceeehhhH
Confidence 345777777776666655532 235654444444433333 234456666533 3335566666644433
No 38
>PRK09776 putative diguanylate cyclase; Provisional
Probab=27.65 E-value=3.2e+02 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 033383 55 VFVRPIKFAILFTFGNLLAVGST 77 (120)
Q Consensus 55 ~l~~p~kFa~l~tlGsil~l~s~ 77 (120)
....+...++.++++|++...-.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~ 85 (1092)
T PRK09776 63 LLFSTSSLNLTWTTINLVEAVVG 85 (1092)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHH
Confidence 33455567888888888754333
No 39
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=26.35 E-value=2.9e+02 Score=20.93 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH----h--h--HHHHHHHHHHHHHHHHHHHHhh
Q 033383 27 CSLSYTQRMYAFAACLLAGLVCMFLSI-IVFV----R--P--IKFAILFTFGNLLAVGSTAFVI 81 (120)
Q Consensus 27 ~~LS~~qRi~gF~~c~~~g~~~~~ls~-~~l~----~--p--~kFa~l~tlGsil~l~s~~fL~ 81 (120)
+++.|+.|+..|+....+..-+. -|+ +++. + - --.++..-++|++++.|...++
T Consensus 85 ~sga~~AR~wLfiGF~l~fgsLi-as~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~v~k 147 (157)
T KOG3393|consen 85 CSGARGARIWLFIGFALLFGSLI-ASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSLVYK 147 (157)
T ss_pred ccccchhhhHHHHHHHHHHhhhh-hhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHHHHh
Confidence 78899999987776544322111 111 1221 1 1 1356777789999988877664
No 40
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=26.15 E-value=1e+02 Score=26.96 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=11.4
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 033383 23 SDGICSLSYTQRMYAFAA 40 (120)
Q Consensus 23 ~~~~~~LS~~qRi~gF~~ 40 (120)
.++-|+.|++.-+.+-.+
T Consensus 280 ~~e~p~is~~ss~~~L~~ 297 (441)
T KOG1397|consen 280 EDEAPNISRWSSIIWLLI 297 (441)
T ss_pred cCCCCcchHHHHHHHHHH
Confidence 455788888775544433
No 41
>COG1288 Predicted membrane protein [Function unknown]
Probab=25.95 E-value=4.7e+02 Score=23.23 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH--------------------HHHHhhcHH
Q 033383 27 CSLSYTQRMYAFAACLLAGLVCMFLSIIV--FVRPIKFAILFTFGNLLAVG--------------------STAFVIGPA 84 (120)
Q Consensus 27 ~~LS~~qRi~gF~~c~~~g~~~~~ls~~~--l~~p~kFa~l~tlGsil~l~--------------------s~~fL~Gp~ 84 (120)
-..+++++++.++.++.+- .++.+... ++.|.-=+.+..+|-+..+. +-+...|-.
T Consensus 269 ~~Ft~~~klvL~lf~l~f~--~mI~GV~~~GW~f~eiA~~Fl~mgIiig~I~glse~~~~~sF~~Ga~~lv~~aLiiGiA 346 (481)
T COG1288 269 RPFTFRDKLVLLLFTLTFV--IMIWGVIVLGWWFPEIAAQFLAMGIIIGLIGGLSENDIASSFIEGASDLLGVALIIGLA 346 (481)
T ss_pred cccchhhhHHHHHHHHHHH--HHHHHhhhhceehHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3578888887666555433 33333322 23455555555555554433 333444444
Q ss_pred HHHHhhccCcchHHHHHHHHH
Q 033383 85 QQINMMFDSARIYATTVYLVC 105 (120)
Q Consensus 85 ~q~k~m~~~~R~~~t~~y~~s 105 (120)
+-+.-+.+...+.-|+++-.+
T Consensus 347 RgI~lim~~g~i~dTiL~~~~ 367 (481)
T COG1288 347 RGINLIMDDGMILDTILNYLA 367 (481)
T ss_pred hceEEEecCcchHHHHHHHHH
Confidence 444445555555556555443
No 42
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=25.27 E-value=1e+02 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----h----------hHHHHHHHHHH
Q 033383 38 FAACLLAGLVCMFLSIIVFV-----R----------PIKFAILFTFG 69 (120)
Q Consensus 38 F~~c~~~g~~~~~ls~~~l~-----~----------p~kFa~l~tlG 69 (120)
.=+|++.++++++++++++. + |-||.+.+.+.
T Consensus 79 yR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~ 125 (426)
T KOG2592|consen 79 YRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLI 125 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHH
Confidence 44699999999999998752 2 33888877654
No 43
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=24.54 E-value=3e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 033383 29 LSYTQRMYAFAACLLAGLVCMFLS 52 (120)
Q Consensus 29 LS~~qRi~gF~~c~~~g~~~~~ls 52 (120)
++.+|+++ ..++.+.+++.+.+
T Consensus 249 ~~~~~~~~--~~~~~l~~~~li~g 270 (465)
T PF03606_consen 249 LTKRPKLY--LLLPVLPFVLLIYG 270 (465)
T ss_pred ccccccee--ehHHHHHHHHHHhc
Confidence 77777765 34444444444443
No 44
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.26 E-value=2.1e+02 Score=21.27 Aligned_cols=46 Identities=20% Similarity=0.054 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhH------HHHHHHHHHHHHHHHHHHHhhcH
Q 033383 38 FAACLLAGLVCMFLSIIVFV-RPI------KFAILFTFGNLLAVGSTAFVIGP 83 (120)
Q Consensus 38 F~~c~~~g~~~~~ls~~~l~-~p~------kFa~l~tlGsil~l~s~~fL~Gp 83 (120)
-.++..+|.++.+++.+=++ .|. .=+..-|+|..+.+.+.....|.
T Consensus 12 ~~ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~ 64 (145)
T PRK12586 12 AAIMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIV 64 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhc
Confidence 45677788888888876222 232 33456788998888888776543
No 45
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=23.95 E-value=2.5e+02 Score=21.80 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhccccccCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHH
Q 033383 16 ESFLEDESDGICSLSYTQRMYAFAA-CLLAGLVCMFLSIIV--------FVRPIKFAILFTFGNLLAVGSTAF 79 (120)
Q Consensus 16 ~~~~~~~~~~~~~LS~~qRi~gF~~-c~~~g~~~~~ls~~~--------l~~p~kFa~l~tlGsil~l~s~~f 79 (120)
|+...++...-..++|.-|+.|++. ++++.+++..+..++ +..-..+.+.+.++-.+++.-.++
T Consensus 169 ~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~~~~s~~lsl~~Ia~ 241 (248)
T PF07787_consen 169 EEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVAFIISFSLSLLTIAL 241 (248)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHHHHHHHHHHHHHHHH
No 46
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=23.46 E-value=3.5e+02 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033383 96 IYATTVYLVCVVIALICA 113 (120)
Q Consensus 96 ~~~t~~y~~sl~lTL~~a 113 (120)
...-+.|.+|++..++.=
T Consensus 214 ~~tivsY~isl~vsl~~L 231 (267)
T PF09622_consen 214 RFTIVSYLISLLVSLLML 231 (267)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345578888887666543
No 47
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=22.67 E-value=6e+02 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 033383 30 SYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60 (120)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~ 60 (120)
+++.|++..+++..++.+-++..-++.-.|.
T Consensus 52 ~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~ 82 (701)
T TIGR01667 52 RLTGRLKNLIITLSCFSIASFLVQLLFPKPW 82 (701)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5677888776666655444444333333343
No 48
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=22.08 E-value=86 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHh
Q 033383 64 ILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 64 ~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~ 115 (120)
....+|.++.....+..-+|..-+++-.+. |-.-+.-|-.|.+.++.++.|
T Consensus 124 ~~~~lG~vc~~~nI~~~~sPL~~m~~VIkt-kSvE~mPf~Ls~a~fl~a~~W 174 (243)
T KOG1623|consen 124 RVSVLGIVCAVFNISMFAAPLSVIRKVIKT-KSVEYMPFPLSFALFLVAVQW 174 (243)
T ss_pred eeeeeehhhhhhhHHhhhccHHhhhhheec-CceeeechHHHHHHHHHHHHH
Confidence 345679999999999999999999987544 222233333356666666555
No 49
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=21.71 E-value=65 Score=25.93 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhHHH
Q 033383 37 AFAACLLAGLVCMFLSIIVF----VRPIKF 62 (120)
Q Consensus 37 gF~~c~~~g~~~~~ls~~~l----~~p~kF 62 (120)
..++++++|.++++++++++ ..|||.
T Consensus 245 Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~ 274 (278)
T PF03381_consen 245 LGIAYLVVGGICLVLAIIFLIIHYFKPRKL 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35678888888888888754 357764
No 50
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.99 E-value=4.1e+02 Score=21.04 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHHHH
Q 033383 28 SLSYTQRMYAFAACLL 43 (120)
Q Consensus 28 ~LS~~qRi~gF~~c~~ 43 (120)
.-++.+-+++.++.++
T Consensus 106 ~~~~~~~l~~~~~~~~ 121 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVG 121 (224)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4567776665544433
Done!