Query 033383
Match_columns 120
No_of_seqs 116 out of 371
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayb_Q DNA-directed RNA polyme 14.3 64 0.0022 21.5 1.2 15 19-33 26-40 (104)
2 3vr8_C Cytochrome B-large subu 11.7 4.5E+02 0.015 19.1 9.2 21 95-115 153-173 (188)
3 3bo0_B Preprotein translocase 10.4 2.9E+02 0.0099 16.1 4.1 18 78-95 8-25 (65)
4 4f4s_A ATP synthase subunit 9, 9.8 3.7E+02 0.013 16.9 4.2 25 33-57 50-74 (76)
5 2klu_A T-cell surface glycopro 9.1 2.5E+02 0.0084 17.6 2.6 10 85-94 45-54 (70)
6 3arc_T Photosystem II reaction 7.3 3.4E+02 0.012 14.5 2.8 14 37-50 7-20 (32)
7 3iz6_D 40S ribosomal protein S 6.9 1E+02 0.0034 24.1 0.0 17 81-97 3-19 (265)
8 3arc_L Photosystem II reaction 6.6 3.9E+02 0.013 14.6 4.2 25 25-49 8-32 (37)
9 2k21_A Potassium voltage-gated 6.5 3.9E+02 0.013 18.8 2.9 19 31-49 55-73 (138)
10 1zoy_C Large cytochrome bindin 6.0 6.8E+02 0.023 16.8 4.9 83 29-115 38-140 (140)
No 1
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=14.30 E-value=64 Score=21.55 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=6.6
Q ss_pred ccccccCCCCCCHHH
Q 033383 19 LEDESDGICSLSYTQ 33 (120)
Q Consensus 19 ~~~~~~~~~~LS~~q 33 (120)
++++.+++|.||-++
T Consensus 26 eE~~eeefpalsiqD 40 (104)
T 4ayb_Q 26 EETSEEEFPKLSIQD 40 (104)
T ss_dssp -------CCCCCHHH
T ss_pred eccccccCccccHHH
Confidence 344556799999754
No 2
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=11.66 E-value=4.5e+02 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 033383 95 RIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 95 R~~~t~~y~~sl~lTL~~al~ 115 (120)
+.-+-++..+++++|++.|++
T Consensus 153 ~~sg~~vl~lSvvltl~la~~ 173 (188)
T 3vr8_C 153 YRGAYLVLGLAALISLAVVVY 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888999888875
No 3
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=10.39 E-value=2.9e+02 Score=16.06 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.1
Q ss_pred HHhhcHHHHHHhhccCcc
Q 033383 78 AFVIGPAQQINMMFDSAR 95 (120)
Q Consensus 78 ~fL~Gp~~q~k~m~~~~R 95 (120)
-|+++..+.+|+..-|.|
T Consensus 8 ~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 8 AFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHhheeccCC
Confidence 577888889999988888
No 4
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=9.82 E-value=3.7e+02 Score=16.91 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033383 33 QRMYAFAACLLAGLVCMFLSIIVFV 57 (120)
Q Consensus 33 qRi~gF~~c~~~g~~~~~ls~~~l~ 57 (120)
.-+.||...=..|+++.++++++++
T Consensus 50 ~~ilG~Al~Ea~glf~LvvA~lllF 74 (76)
T 4f4s_A 50 MAILGFALSEATGLFCLMVSFLLLF 74 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888999999999987654
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=9.10 E-value=2.5e+02 Score=17.59 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.8
Q ss_pred HHHHhhccCc
Q 033383 85 QQINMMFDSA 94 (120)
Q Consensus 85 ~q~k~m~~~~ 94 (120)
+|+|++++++
T Consensus 45 SQikrlLsEK 54 (70)
T 2klu_A 45 SQIKRLLSEK 54 (70)
T ss_dssp SHHHHHHHSS
T ss_pred HHHHHHHhcc
Confidence 5666665544
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.27 E-value=3.4e+02 Score=14.46 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 033383 37 AFAACLLAGLVCMF 50 (120)
Q Consensus 37 gF~~c~~~g~~~~~ 50 (120)
.|+....+|++++.
T Consensus 7 t~ll~~tlgiiFFA 20 (32)
T 3arc_T 7 VFIFACIIALFFFA 20 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444445555443
No 7
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=6.86 E-value=1e+02 Score=24.07 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=0.0
Q ss_pred hcHHHHHHhhccCcchH
Q 033383 81 IGPAQQINMMFDSARIY 97 (120)
Q Consensus 81 ~Gp~~q~k~m~~~~R~~ 97 (120)
+||++++|++..|+-|+
T Consensus 3 rg~kkHlKRl~AP~~W~ 19 (265)
T 3iz6_D 3 RGLKKHLKRLNAPKHWM 19 (265)
T ss_dssp -----------------
T ss_pred CCcccccccccCCcccc
Confidence 59999999999987765
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.62 E-value=3.9e+02 Score=14.62 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 033383 25 GICSLSYTQRMYAFAACLLAGLVCM 49 (120)
Q Consensus 25 ~~~~LS~~qRi~gF~~c~~~g~~~~ 49 (120)
+--.|+++.-..|-...++++++++
T Consensus 8 q~VELNRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHHHHHhh
Confidence 3447888776666666677776665
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=6.51 E-value=3.9e+02 Score=18.75 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033383 31 YTQRMYAFAACLLAGLVCM 49 (120)
Q Consensus 31 ~~qRi~gF~~c~~~g~~~~ 49 (120)
+--=+++|..|+.+|+++.
T Consensus 55 YIL~vmgffgff~~GImLs 73 (138)
T 2k21_A 55 YVLMVLGFFGFFTLGIMLS 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666544
No 10
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=5.97 E-value=6.8e+02 Score=16.76 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHH---------HHHHHHHhhcHHHHHHhhc------
Q 033383 29 LSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTF--GNLL---------AVGSTAFVIGPAQQINMMF------ 91 (120)
Q Consensus 29 LS~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~tl--Gsil---------~l~s~~fL~Gp~~q~k~m~------ 91 (120)
+|--+|+-|.+..+.+.++. ...+..|..|.-.-.. +..+ ......+..=-.+=++|+.
T Consensus 38 ~SIlHRiTGv~L~~~l~~~~----~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yH~~nGiRHL~wD~g~g 113 (140)
T 1zoy_C 38 MSICHRGTGIALSAGVSLFG----LSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKG 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHSCSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q ss_pred ---cCcchHHHHHHHHHHHHHHHHHHh
Q 033383 92 ---DSARIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 92 ---~~~R~~~t~~y~~sl~lTL~~al~ 115 (120)
+..|.-+-++..+|+++|++.++.
T Consensus 114 ~~~~~~~~s~~~v~~~s~vlt~~~~~~ 140 (140)
T 1zoy_C 114 LTIPQLTQSGVVVLILTVLSSVGLAAM 140 (140)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHC
Done!