Query 033383
Match_columns 120
No_of_seqs 116 out of 371
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 22:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90a3 f.23.23.1 (A:248-292) 18.4 30 0.0022 18.7 1.8 21 92-112 1-21 (45)
2 d1vf5c3 f.23.23.1 (C:250-286) 18.0 32 0.0023 17.8 1.8 21 92-112 2-22 (37)
3 d1nekc_ f.21.2.2 (C:) Succinat 16.3 1.2E+02 0.0086 18.6 8.5 86 29-115 26-127 (129)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 10.7 1.1E+02 0.0083 15.4 4.2 26 24-49 7-32 (37)
5 d1v54j_ f.23.4.1 (J:) Mitochon 5.1 2.8E+02 0.021 15.1 3.0 22 94-115 28-49 (58)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 4.8 4.6E+02 0.033 17.1 7.4 11 85-95 139-149 (447)
7 d3bz6a2 a.4.5.75 (A:97-180) Hy 4.3 80 0.0058 19.0 -0.1 13 73-85 13-25 (84)
8 d2i52a1 d.316.1.1 (A:1-120) Hy 3.5 5.3E+02 0.038 16.0 3.5 16 21-36 3-18 (120)
9 d2bopa_ d.58.8.1 (A:) Papillom 3.4 1.2E+02 0.0086 18.0 0.1 14 77-90 3-16 (85)
10 d2bs2c1 f.21.2.1 (C:1-254) Fum 3.4 3.5E+02 0.026 18.4 2.8 25 29-53 125-149 (254)
No 1
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.40 E-value=30 Score=18.67 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.3
Q ss_pred cCcchHHHHHHHHHHHHHHHH
Q 033383 92 DSARIYATTVYLVCVVIALIC 112 (120)
Q Consensus 92 ~~~R~~~t~~y~~sl~lTL~~ 112 (120)
+|.|+..-++|+++++++=..
T Consensus 1 nP~Rv~gll~F~~~v~laQi~ 21 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVL 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 567888888899888877544
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.98 E-value=32 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.4
Q ss_pred cCcchHHHHHHHHHHHHHHHH
Q 033383 92 DSARIYATTVYLVCVVIALIC 112 (120)
Q Consensus 92 ~~~R~~~t~~y~~sl~lTL~~ 112 (120)
+|.|+..-++|+.++.++=..
T Consensus 2 ~p~Rv~gl~~F~~~v~laQi~ 22 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLAQLM 22 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 577888888998888877544
No 3
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=16.30 E-value=1.2e+02 Score=18.60 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHH-HHHHHHHHHhhcHHHHHHhhc-------cC--
Q 033383 29 LSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFT-----FGN-LLAVGSTAFVIGPAQQINMMF-------DS-- 93 (120)
Q Consensus 29 LS~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~t-----lGs-il~l~s~~fL~Gp~~q~k~m~-------~~-- 93 (120)
+|-..|+-|.+..+++..+...+... ...|..|..... ++. +.......|..=-.+-+||+. +.
T Consensus 26 ~SI~HRisGv~l~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGIRHL~wD~G~g~~~~~ 104 (129)
T d1nekc_ 26 ASILHRVSGVITFVAVGILLWLLGTS-LSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccchhhHH
Confidence 46779999887766655544333321 122332222211 111 222333444333344555543 21
Q ss_pred -cchHHHHHHHHHHHHHHHHHHh
Q 033383 94 -ARIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 94 -~R~~~t~~y~~sl~lTL~~al~ 115 (120)
.|.-.-++...++++|++.+++
T Consensus 105 ~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 105 AGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333445666777777776654
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.74 E-value=1.1e+02 Score=15.42 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=17.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 033383 24 DGICSLSYTQRMYAFAACLLAGLVCM 49 (120)
Q Consensus 24 ~~~~~LS~~qRi~gF~~c~~~g~~~~ 49 (120)
++-..|.++.-..|-...+++|++|+
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHHHHHH
Confidence 33457888776666666777777665
No 5
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.09 E-value=2.8e+02 Score=15.14 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 033383 94 ARIYATTVYLVCVVIALICALL 115 (120)
Q Consensus 94 ~R~~~t~~y~~sl~lTL~~al~ 115 (120)
+++.+-+....+++.|.|+...
T Consensus 28 D~~LYr~Tm~L~~~G~~~s~~~ 49 (58)
T d1v54j_ 28 DNILYRVTMTLCLGGTLYSLYC 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666554
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=4.6e+02 Score=17.13 Aligned_cols=11 Identities=0% Similarity=0.117 Sum_probs=5.5
Q ss_pred HHHHhhccCcc
Q 033383 85 QQINMMFDSAR 95 (120)
Q Consensus 85 ~q~k~m~~~~R 95 (120)
+.+...+.+++
T Consensus 139 ~~i~~~~~~~~ 149 (447)
T d1pw4a_ 139 RTMVHWWSQKE 149 (447)
T ss_dssp HHHHTTCTTTH
T ss_pred HHHHHHHHhhc
Confidence 44555555443
No 7
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.27 E-value=80 Score=18.95 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=9.3
Q ss_pred HHHHHHHhhcHHH
Q 033383 73 AVGSTAFVIGPAQ 85 (120)
Q Consensus 73 ~l~s~~fL~Gp~~ 85 (120)
.+....+|+||++
T Consensus 13 All~~LlLRGpQT 25 (84)
T d3bz6a2 13 ILTGLLLLRGPQT 25 (84)
T ss_dssp HHHHHHHHHCSBC
T ss_pred HHHHHHHhcCCCC
Confidence 4556778888864
No 8
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=3.49 E-value=5.3e+02 Score=15.97 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.3
Q ss_pred ccccCCCCCCHHHHHH
Q 033383 21 DESDGICSLSYTQRMY 36 (120)
Q Consensus 21 ~~~~~~~~LS~~qRi~ 36 (120)
|+.+.++++|-+||..
T Consensus 3 dpa~kYFn~TdrerA~ 18 (120)
T d2i52a1 3 DPAEKYFNCTDIQRAF 18 (120)
T ss_dssp CTTGGGCCSCHHHHHH
T ss_pred ChHHhhcCCCcHHHHH
Confidence 4456677999999974
No 9
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=3.42 E-value=1.2e+02 Score=17.98 Aligned_cols=14 Identities=29% Similarity=0.448 Sum_probs=11.0
Q ss_pred HHHhhcHHHHHHhh
Q 033383 77 TAFVIGPAQQINMM 90 (120)
Q Consensus 77 ~~fL~Gp~~q~k~m 90 (120)
+..|+||.+|+|..
T Consensus 3 ~illkG~~N~LKC~ 16 (85)
T d2bopa_ 3 FALISGTANQVKCY 16 (85)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEEcCCCcccCh
Confidence 34678999999975
No 10
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=3.37 E-value=3.5e+02 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 033383 29 LSYTQRMYAFAACLLAGLVCMFLSI 53 (120)
Q Consensus 29 LS~~qRi~gF~~c~~~g~~~~~ls~ 53 (120)
+++.||+.|+++.+.+..-..-+-+
T Consensus 125 ~~~~q~~tG~ill~fi~~Hl~~~~~ 149 (254)
T d2bs2c1 125 LWWIQAMTGFAMFFLGSVHLYIMMT 149 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Done!