BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033384
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+FK+E+ F++R ES+ I ++P+R+PVI EK ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 4 TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 63
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 64 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+FK+E+ F++R ES+ I ++P+R+PVI EK ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 5 TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 64
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 65 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+FK+E+ F++R ES+ I ++P+R+PVI EK ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 7 TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 67 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 4 GKVKS-FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
G +KS FK+E+ F++R ES+ I ++ +R+PVI EK ++D+P+++K KYLVP D+++G
Sbjct: 1 GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 63 HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
F+Y++ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 61 QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 4 GKVKS-FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMG 62
G +KS FK+E+ F++R ES+ I ++ +R+PVI EK ++D+P+++K KYLVP D+++G
Sbjct: 1 GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 63 HFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
F+Y++ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 61 QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 86/113 (76%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+FK+E+ F++R ES+ I ++ +R+PVI EK ++D+P+++K KYLVP D+++G F+Y+
Sbjct: 7 TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ R+ L P KA+F+FVN+TLP TA+ M +IY+ KD DGFLY+ YS E TFG
Sbjct: 67 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 79/112 (70%)
Query: 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
FK +HS + R ES I AKYPDRVPVI+EK S + + D++K KYLVP D+++ F++I+
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
R+ L KA+F+FV+ T+PQ++ M +Y+ KD DGFLY+ YS E TFG
Sbjct: 65 RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 77/113 (68%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+K EHSF++R E + I KYPDRVPVI+EK + L D++K KYLVP D+++G F ++
Sbjct: 12 QYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFL 71
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ R+HL P ALF FVNN +P T++ M S+Y+ D D FLY+ +S E +G
Sbjct: 72 IRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+K +H F+ R +E + I KYPDRVPVI+EK + +PD++K KYLVP D+++G F ++
Sbjct: 8 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 67
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116
+ R+HL P ALF FVNNT+P T++ M +Y+ + D FLY+ YS E
Sbjct: 68 IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDE 116
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
+K EH F++R E + I KYPDRVPVI+EK + + D++K KYLVP D+++G F +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
R+HL ALF FVNN +P T++ M +Y+ + D FLY+ YS E +G
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
+K EH F++R E + I KYPDRVPVI+EK + + D++K KYLVP D+++G F +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
R+HL ALF FVNN +P T++ M +Y+ + D FLY+ YS E +G
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
+K EH F++R E + I KYPDRVPVI+EK + + D++K KYLVP D+++G F +++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
R+HL ALF FVNN +P T++ M +Y+ + D FLY+ YS E +G
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
+K +H F+ R +E + I KYPDRVPVI+EK + +PD++K KYLVP D+++G F ++
Sbjct: 3 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 68 LSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114
+ R+HL P ALF FVNNT+P T++ M +Y+ + D FLY+ YS
Sbjct: 63 IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 77/112 (68%)
Query: 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYIL 68
+K H+F+ R ++ + ++PDR+P+I EK +D+ ++++ K+LVP D+++G F+ +L
Sbjct: 8 YKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVL 67
Query: 69 SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
R+ LE ALFV+ N+T+ ++++M IY +KD DGFLYM YS E TFG
Sbjct: 68 RKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSR-TDLPDMEKTKYLVPRDMSMGHF 64
V+ FK S R EE I AK+P+++PV++E+Y R T LP ++KTK+LVP++++M F
Sbjct: 12 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQF 71
Query: 65 IYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
+ I+ SR+ L +A ++ VNN +L ++ M IY+ +KD DGF+YM Y++++TFG
Sbjct: 72 LSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 8 SFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYI 67
S K E SF+ R+ E+ I +KYP+R+PV+IE+ +R++LP +EK K+LVP +M +G F +I
Sbjct: 7 SLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFI 66
Query: 68 L---------SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKT 118
L S + L + +++FVNN +P+T M +Y+ +KD DG+LYM YS+E +
Sbjct: 67 LHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYSSESS 126
Query: 119 FG 120
G
Sbjct: 127 LG 128
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
Query: 3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSM 61
M K+FK SF++R+E+ + I ++P ++PVIIE+Y LP ++KTK+LVP ++M
Sbjct: 2 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 61
Query: 62 GHFIYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I I+ RL L +A F+ VN +++ ++ + +Y+S +D DGFLYM Y++++TFG
Sbjct: 62 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
Query: 3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSM 61
M K+FK +F++R+E+ + I ++P ++PVIIE+Y LP ++KTK+LVP ++M
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 62 GHFIYILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I I+ RL L +A F+ VN +++ ++ + +Y+S KD DGFLYM Y++++TFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
K+FK +F++R+E+ + I ++P ++PVIIE+Y LP ++KTK+LVP ++M I
Sbjct: 10 KTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66 YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I+ RL L +A F+ VN +++ ++ + +Y+S KD DGFLYM Y++++TFG
Sbjct: 70 KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
K+FK SF++R+E+ + I ++P ++PVIIE+Y LP ++KTK+LVP ++M I
Sbjct: 10 KTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66 YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I+ RL L +A F+ VN +++ ++ + +Y+S +D DGFLYM Y++++TFG
Sbjct: 70 KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
K+FK SF++R+E+ + I ++P ++PVIIE+Y LP ++KTK+LVP ++M I
Sbjct: 10 KTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELI 69
Query: 66 YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I+ RL L +A F+ VN +++ ++ + +Y+S +D DGFLYM Y++++TFG
Sbjct: 70 KIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKY-SRTDLPDMEKTKYLVPRDMSMGHFI 65
+ FK SF +R +E + I ++P ++PVIIE+Y LP ++KTK+LVP ++M +
Sbjct: 6 RPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELV 65
Query: 66 YILSSRLHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
I+ RL L P +A F+ VN +++ ++ + IY+ KD DGFLYM Y++++TFG
Sbjct: 66 KIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 44 DLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTL-PQTASRMDSIYKSF 102
D P M+ K+ V R ++ I + L L + LF++VN + P + ++Y+ F
Sbjct: 15 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECF 74
Query: 103 KDADGFLYMCYSTEKTFG 120
+DG L + Y + +G
Sbjct: 75 -GSDGKLVLHYCKSQAWG 91
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 17 ERLEESKAIVAKY------------PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHF 64
+R+ E++A++A Y P R+ +I + + P + RD
Sbjct: 135 KRMLEAEALLAAYSSTILRFSGIYGPGRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFI 194
Query: 65 IYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120
Y++ R H P + V N LP + + + D G Y +T G
Sbjct: 195 AYLIQQRSHAVPERLYIVTDNQPLP-----VHDLLRWLADRQGIAYPAGATPPVQG 245
>pdb|2KZS|A Chain A, Daxx Helical Bundle (Dhb) Domain
pdb|2KZU|A Chain A, Daxx Helical Bundle (Dhb) Domain RASSF1C COMPLEX
Length = 94
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 3 MGKVKSFKTEHS--FDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMS 60
MGK K +K E+ F+E LE K A +P+ VP + + R ++
Sbjct: 4 MGK-KCYKLENEKLFEEFLELCKMQTADHPEVVPFLYNRQQRAH-----------SLFLA 51
Query: 61 MGHFIYILS---SRLHLEPGKALFVFVN 85
F ILS SR P K L+V++N
Sbjct: 52 SAEFCNILSRVLSRARSRPAK-LYVYIN 78
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFV 84
D V + +Y +T + D + +P D++ H Y++SS G F FV
Sbjct: 151 DEVGALAHRYGKTYIVDAXSSFGGIPXDIAALHIDYLISSANKCIQGVPGFAFV 204
>pdb|1BYK|A Chain A, Trehalose Repressor From Escherichia Coli
pdb|1BYK|B Chain B, Trehalose Repressor From Escherichia Coli
Length = 255
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 77 GKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTF 119
G LF F T A S+ +DA GF +CY E
Sbjct: 61 GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAI 103
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 71 RLHLEPGKALFVFVNNTLPQTASRMDSIYKS---FKDADGFLYMCYSTEKTF 119
+LHL PGK V ++ TA ++ ++ + ++ F + C + K
Sbjct: 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKII 151
>pdb|4GQO|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Uncharacterized Protein Lmo0859 From Listeria
Monocytogenes Egd-E
pdb|4GQO|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Uncharacterized Protein Lmo0859 From Listeria
Monocytogenes Egd-E
pdb|4GQO|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Uncharacterized Protein Lmo0859 From Listeria
Monocytogenes Egd-E
Length = 433
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 14 SFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPD 47
++ E LE K + AKYPD+V +++ DL D
Sbjct: 169 TYSEALEVGKKLKAKYPDKV-----LWAKGDLSD 197
>pdb|3IYD|F Chain F, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 613
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 3 MGKVKSFKTEHSFD--ERLEES----KAIVAKYPDRVPVIIEKYSRTD 44
MG V+ E D +R+E+ + VA+YP+ + ++E+Y+R +
Sbjct: 105 MGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,449,362
Number of Sequences: 62578
Number of extensions: 123350
Number of successful extensions: 325
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 31
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)