Query 033384
Match_columns 120
No_of_seqs 104 out of 363
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1654 Microtubule-associated 100.0 5.8E-53 1.2E-57 293.1 12.0 115 6-120 2-116 (116)
2 cd01611 GABARAP Ubiquitin doma 100.0 3E-52 6.5E-57 292.6 13.3 112 9-120 1-112 (112)
3 PTZ00380 microtubule-associate 100.0 9.5E-50 2.1E-54 282.6 12.0 109 7-120 2-111 (121)
4 PF02991 Atg8: Autophagy prote 100.0 3.3E-49 7.2E-54 274.0 11.4 104 17-120 1-104 (104)
5 cd01612 APG12_C Ubiquitin-like 100.0 1E-33 2.2E-38 190.9 9.9 84 36-120 3-87 (87)
6 PF04110 APG12: Ubiquitin-like 99.9 2.9E-25 6.4E-30 149.7 6.6 78 42-120 9-87 (87)
7 KOG3439 Protein conjugation fa 99.9 5.5E-24 1.2E-28 148.2 9.0 86 32-120 30-116 (116)
8 PF04106 APG5: Autophagy prote 96.6 0.005 1.1E-07 46.8 5.3 100 13-114 88-195 (197)
9 PF11816 DUF3337: Domain of un 95.5 0.13 2.8E-06 41.9 9.1 88 29-116 211-329 (331)
10 PF11976 Rad60-SLD: Ubiquitin- 93.3 0.23 5.1E-06 30.9 4.6 50 49-98 11-60 (72)
11 KOG2660 Locus-specific chromos 91.8 0.26 5.7E-06 40.6 4.2 72 44-116 159-234 (331)
12 cd06406 PB1_P67 A PB1 domain i 91.1 0.96 2.1E-05 30.1 5.7 55 54-111 16-75 (80)
13 PF13019 Telomere_Sde2: Telome 89.3 2.9 6.3E-05 31.2 7.6 61 52-113 18-81 (162)
14 smart00213 UBQ Ubiquitin homol 86.2 2.7 5.8E-05 24.8 4.9 46 51-97 12-57 (64)
15 KOG2976 Protein involved in au 83.4 16 0.00034 29.5 9.2 91 15-113 162-273 (278)
16 PF03671 Ufm1: Ubiquitin fold 82.2 6.4 0.00014 25.9 5.5 59 46-104 13-71 (76)
17 cd00196 UBQ Ubiquitin-like pro 82.1 6.2 0.00014 21.4 5.4 41 48-89 7-48 (69)
18 cd01763 Sumo Small ubiquitin-r 79.8 8 0.00017 25.2 5.6 49 49-98 22-70 (87)
19 cd05992 PB1 The PB1 domain is 79.5 13 0.00027 23.2 6.7 64 49-112 10-79 (81)
20 PF00240 ubiquitin: Ubiquitin 79.1 2 4.3E-05 26.3 2.3 46 52-98 9-54 (69)
21 cd01813 UBP_N UBP ubiquitin pr 77.3 3.8 8.2E-05 26.1 3.3 45 54-98 15-61 (74)
22 cd06398 PB1_Joka2 The PB1 doma 77.2 6.3 0.00014 26.5 4.5 53 49-101 10-72 (91)
23 cd01790 Herp_N Homocysteine-re 75.6 20 0.00043 23.5 7.1 62 52-114 15-79 (79)
24 PF10302 DUF2407: DUF2407 ubiq 75.6 17 0.00036 24.7 6.3 71 44-115 10-94 (97)
25 cd01776 Rin1_RA Ubiquitin doma 75.3 7.2 0.00016 26.3 4.3 56 52-107 17-80 (87)
26 cd06396 PB1_NBR1 The PB1 domai 75.2 17 0.00037 24.1 6.1 63 49-114 10-79 (81)
27 cd01806 Nedd8 Nebb8-like ubiq 74.8 11 0.00024 23.1 5.0 58 52-114 14-72 (76)
28 smart00666 PB1 PB1 domain. Pho 74.2 19 0.00041 22.6 6.4 63 49-111 11-78 (81)
29 cd01769 UBL Ubiquitin-like dom 72.3 14 0.0003 21.8 4.8 58 52-113 11-68 (69)
30 cd01807 GDX_N ubiquitin-like d 71.7 7.8 0.00017 24.2 3.7 45 53-98 15-59 (74)
31 cd01805 RAD23_N Ubiquitin-like 71.0 10 0.00022 23.5 4.2 56 53-113 15-73 (77)
32 cd01798 parkin_N amino-termina 70.1 9.2 0.0002 23.6 3.7 56 53-112 13-68 (70)
33 PF00837 T4_deiodinase: Iodoth 68.5 8.8 0.00019 30.3 4.1 34 7-41 158-191 (237)
34 PF00788 RA: Ras association ( 66.9 29 0.00063 21.8 7.4 65 48-112 16-89 (93)
35 PF14836 Ubiquitin_3: Ubiquiti 66.5 8.5 0.00018 26.0 3.2 47 54-100 19-71 (88)
36 cd01810 ISG15_repeat2 ISG15 ub 64.7 31 0.00068 21.4 5.5 58 53-114 13-70 (74)
37 cd01803 Ubiquitin Ubiquitin. U 64.7 18 0.00039 22.1 4.3 59 52-114 14-72 (76)
38 cd01809 Scythe_N Ubiquitin-lik 64.0 22 0.00047 21.5 4.6 45 52-97 14-58 (72)
39 cd01794 DC_UbP_C dendritic cel 62.5 13 0.00029 23.3 3.4 47 52-100 12-58 (70)
40 cd01808 hPLIC_N Ubiquitin-like 61.9 35 0.00075 21.0 5.7 58 52-113 13-70 (71)
41 PF12752 SUZ: SUZ domain; Int 61.1 9.3 0.0002 23.5 2.4 20 9-28 34-53 (59)
42 PF08154 NLE: NLE (NUC135) dom 60.8 38 0.00081 21.0 6.0 41 47-87 14-55 (65)
43 cd01799 Hoil1_N Ubiquitin-like 59.4 29 0.00064 22.1 4.7 57 52-111 16-72 (75)
44 PF12436 USP7_ICP0_bdg: ICP0-b 59.2 11 0.00024 29.4 3.1 58 52-113 88-151 (249)
45 cd01796 DDI1_N DNA damage indu 58.0 16 0.00035 22.7 3.2 57 53-112 14-70 (71)
46 cd01812 BAG1_N Ubiquitin-like 57.1 21 0.00045 21.6 3.6 44 53-97 14-57 (71)
47 cd06407 PB1_NLP A PB1 domain i 56.9 24 0.00051 23.1 4.0 54 49-102 10-68 (82)
48 PTZ00044 ubiquitin; Provisiona 56.5 21 0.00045 22.1 3.5 45 52-97 14-58 (76)
49 cd01793 Fubi Fubi ubiquitin-li 55.9 38 0.00081 21.0 4.7 59 50-112 10-68 (74)
50 PF00564 PB1: PB1 domain; Int 54.8 31 0.00067 21.5 4.2 52 53-104 16-71 (84)
51 cd01791 Ubl5 UBL5 ubiquitin-li 54.5 28 0.00061 22.1 3.9 56 54-113 17-72 (73)
52 COG0669 CoaD Phosphopantethein 50.9 31 0.00068 25.7 4.2 93 12-109 45-146 (159)
53 PF11543 UN_NPL4: Nuclear pore 50.2 12 0.00025 24.5 1.6 58 51-112 16-78 (80)
54 PF14533 USP7_C2: Ubiquitin-sp 49.8 14 0.00031 28.1 2.3 50 49-98 34-90 (213)
55 cd01792 ISG15_repeat1 ISG15 ub 46.9 29 0.00063 22.0 3.1 58 54-114 18-76 (80)
56 cd01800 SF3a120_C Ubiquitin-li 44.5 44 0.00094 20.9 3.7 58 53-114 12-69 (76)
57 PRK13964 coaD phosphopantethei 43.8 83 0.0018 22.6 5.4 88 8-100 39-137 (140)
58 cd01804 midnolin_N Ubiquitin-l 42.4 87 0.0019 19.7 5.0 58 53-115 16-73 (78)
59 PF05717 TnpB_IS66: IS66 Orf2 42.1 37 0.00079 23.4 3.2 27 60-86 16-43 (107)
60 PF12436 USP7_ICP0_bdg: ICP0-b 41.8 61 0.0013 25.2 4.8 56 31-89 175-232 (249)
61 cd01795 USP48_C USP ubiquitin- 40.9 54 0.0012 22.9 3.8 25 53-77 19-43 (107)
62 PF01886 DUF61: Protein of unk 40.7 82 0.0018 22.6 4.9 60 19-83 46-111 (132)
63 cd01815 BMSC_UbP_N Ubiquitin-l 39.7 64 0.0014 21.0 3.9 54 55-111 17-72 (75)
64 PF09358 UBA_e1_C: Ubiquitin-a 39.4 26 0.00057 24.7 2.2 51 51-102 35-94 (125)
65 PRK04115 hypothetical protein; 39.2 1.4E+02 0.0031 21.7 6.0 59 20-83 50-113 (137)
66 TIGR00601 rad23 UV excision re 38.8 1.3E+02 0.0029 25.2 6.6 64 48-115 8-76 (378)
67 PF11767 SET_assoc: Histone ly 38.6 89 0.0019 19.7 4.3 55 53-115 6-63 (66)
68 TIGR01682 moaD molybdopterin c 37.2 44 0.00096 21.0 2.9 37 52-88 19-58 (80)
69 cd06411 PB1_p51 The PB1 domain 37.2 1.2E+02 0.0026 19.9 5.7 58 54-111 12-75 (78)
70 cd01802 AN1_N ubiquitin-like d 36.8 70 0.0015 21.6 3.9 58 53-114 42-99 (103)
71 PF09379 FERM_N: FERM N-termin 36.6 60 0.0013 20.0 3.4 36 49-84 7-42 (80)
72 PF00789 UBX: UBX domain; Int 36.5 40 0.00086 21.2 2.5 50 49-98 17-70 (82)
73 PRK13669 hypothetical protein; 36.1 26 0.00056 23.2 1.6 28 77-104 44-74 (78)
74 PRK06437 hypothetical protein; 33.8 75 0.0016 19.7 3.4 38 53-95 15-52 (67)
75 cd06408 PB1_NoxR The PB1 domai 33.7 62 0.0013 21.7 3.2 49 53-103 16-68 (86)
76 COG3343 RpoE DNA-directed RNA 33.6 47 0.001 25.2 2.8 47 58-120 30-77 (175)
77 PF06970 RepA_N: Replication i 33.0 22 0.00048 23.0 0.9 16 102-117 42-57 (76)
78 cd01775 CYR1_RA Ubiquitin doma 32.8 1.7E+02 0.0036 20.2 5.5 43 51-93 15-61 (97)
79 cd01766 Ufm1 Urm1-like ubiquit 32.2 76 0.0016 21.0 3.3 58 46-104 13-71 (82)
80 cd01760 RBD Ubiquitin-like dom 31.0 1.5E+02 0.0032 19.0 4.6 54 45-98 6-62 (72)
81 cd01768 RA RA (Ras-associating 30.7 1.2E+02 0.0027 19.0 4.2 57 48-104 12-75 (87)
82 PF02597 ThiS: ThiS family; I 30.5 37 0.0008 20.7 1.6 41 50-90 13-55 (77)
83 PRK10953 cysJ sulfite reductas 29.9 3.3E+02 0.0073 24.1 7.9 87 29-116 432-522 (600)
84 cd00952 CHBPH_aldolase Trans-o 29.6 67 0.0014 25.7 3.3 29 13-41 58-86 (309)
85 PF11470 TUG-UBL1: GLUT4 regul 28.8 1.2E+02 0.0027 19.0 3.8 40 47-87 5-44 (65)
86 cd00754 MoaD Ubiquitin domain 28.8 60 0.0013 20.0 2.4 41 52-92 19-62 (80)
87 smart00148 PLCXc Phospholipase 28.6 51 0.0011 23.2 2.2 31 57-87 67-97 (135)
88 KOG1209 1-Acyl dihydroxyaceton 28.6 1.2E+02 0.0027 24.3 4.5 52 48-103 54-110 (289)
89 PF05768 DUF836: Glutaredoxin- 28.5 53 0.0012 20.7 2.1 18 23-40 40-57 (81)
90 PF14560 Ubiquitin_2: Ubiquiti 28.5 64 0.0014 20.7 2.5 32 52-83 17-49 (87)
91 PRK02363 DNA-directed RNA poly 28.1 48 0.001 23.7 2.0 50 56-120 17-66 (129)
92 cd03483 MutL_Trans_MLH1 MutL_T 27.9 82 0.0018 21.8 3.2 26 77-102 47-75 (127)
93 TIGR02609 doc_partner putative 27.6 73 0.0016 20.2 2.6 21 66-86 16-36 (74)
94 cd01797 NIRF_N amino-terminal 27.5 1.1E+02 0.0023 19.5 3.4 57 55-115 19-75 (78)
95 cd00137 PI-PLCc Catalytic doma 27.4 56 0.0012 25.8 2.5 51 58-110 73-126 (274)
96 smart00295 B41 Band 4.1 homolo 27.4 1.6E+02 0.0034 21.0 4.7 52 49-100 14-71 (207)
97 smart00314 RA Ras association 26.4 1.8E+02 0.0038 18.4 5.6 57 46-102 13-75 (90)
98 PRK08364 sulfur carrier protei 26.2 91 0.002 19.3 2.9 37 52-93 17-53 (70)
99 cd00951 KDGDH 5-dehydro-4-deox 25.8 85 0.0018 24.7 3.3 98 13-116 50-161 (289)
100 KOG3483 Uncharacterized conser 25.8 1.2E+02 0.0026 20.3 3.4 59 45-104 23-82 (94)
101 cd00408 DHDPS-like Dihydrodipi 25.7 86 0.0019 24.2 3.3 29 13-41 47-75 (281)
102 TIGR02313 HpaI-NOT-DapA 2,4-di 25.2 89 0.0019 24.8 3.3 29 13-41 50-78 (294)
103 TIGR01683 thiS thiamine biosyn 24.6 1.5E+02 0.0033 17.8 3.7 35 50-89 5-40 (64)
104 PF00255 GSHPx: Glutathione pe 24.5 74 0.0016 21.9 2.4 26 91-117 38-63 (108)
105 cd06401 PB1_TFG The PB1 domain 24.4 1.9E+02 0.0041 19.2 4.2 23 51-73 12-35 (81)
106 PF14060 DUF4252: Domain of un 24.1 93 0.002 21.8 2.9 25 91-115 20-44 (155)
107 TIGR00683 nanA N-acetylneurami 24.1 95 0.0021 24.5 3.3 29 13-41 51-79 (290)
108 cd01782 AF6_RA_repeat1 Ubiquit 23.6 2E+02 0.0043 20.3 4.4 33 54-86 41-79 (112)
109 PF08469 NPHI_C: Nucleoside tr 23.5 57 0.0012 24.1 1.7 21 90-110 102-122 (148)
110 PF10137 TIR-like: Predicted n 23.5 1.3E+02 0.0029 21.2 3.6 16 104-119 110-125 (125)
111 PF07929 PRiA4_ORF3: Plasmid p 23.5 1.5E+02 0.0032 21.5 4.0 29 50-78 19-47 (179)
112 KOG1651 Glutathione peroxidase 23.5 1.2E+02 0.0027 22.8 3.5 35 79-114 35-74 (171)
113 PF02196 RBD: Raf-like Ras-bin 23.2 1.5E+02 0.0033 18.6 3.5 38 45-83 7-44 (71)
114 PF15243 ANAPC15: Anaphase-pro 22.9 85 0.0019 21.3 2.4 20 16-35 35-54 (92)
115 PRK03620 5-dehydro-4-deoxygluc 22.5 1.1E+02 0.0023 24.4 3.3 28 13-40 57-84 (303)
116 PRK03170 dihydrodipicolinate s 22.4 1.1E+02 0.0023 24.0 3.2 30 12-41 50-79 (292)
117 PRK04147 N-acetylneuraminate l 22.1 1.1E+02 0.0023 24.1 3.2 29 13-41 54-82 (293)
118 PF00701 DHDPS: Dihydrodipicol 21.9 90 0.002 24.3 2.7 99 13-116 51-165 (289)
119 PF10336 DUF2420: Protein of u 21.6 2.5E+02 0.0053 19.4 4.6 62 58-119 10-97 (113)
120 PRK13125 trpA tryptophan synth 21.6 92 0.002 23.9 2.7 17 102-120 149-165 (244)
121 PF01704 UDPGP: UTP--glucose-1 21.2 2.7E+02 0.0059 23.6 5.6 56 15-89 88-143 (420)
122 PF13905 Thioredoxin_8: Thiore 21.1 1.4E+02 0.0031 18.5 3.2 22 93-114 21-42 (95)
123 PF07293 DUF1450: Protein of u 21.0 69 0.0015 21.0 1.6 27 78-104 45-74 (78)
124 COG2002 AbrB Regulators of sta 20.3 1.3E+02 0.0028 19.6 2.9 21 66-86 20-40 (89)
125 PRK11347 antitoxin ChpS; Provi 20.1 2.5E+02 0.0055 18.3 4.2 38 66-103 18-60 (83)
No 1
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=100.00 E-value=5.8e-53 Score=293.13 Aligned_cols=115 Identities=53% Similarity=0.966 Sum_probs=113.3
Q ss_pred CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+++||++||||+|++|+.+||+|||+|||||||++.++++|.|||+|||||+++|||||+.+||+||+|++++|+|||||
T Consensus 2 ~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn 81 (116)
T KOG1654|consen 2 KSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVN 81 (116)
T ss_pred cchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus 82 ~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG 116 (116)
T KOG1654|consen 82 NTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG 116 (116)
T ss_pred CcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence 99999999999999999999999999999999999
No 2
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=100.00 E-value=3e-52 Score=292.60 Aligned_cols=112 Identities=56% Similarity=1.098 Sum_probs=111.1
Q ss_pred ccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCcc
Q 033384 9 FKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTL 88 (120)
Q Consensus 9 fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~l 88 (120)
||++||||+|++|+++||+|||+|||||||+++++++|.|+++||+||+++||+||+.+||++|+|++++||||||||.+
T Consensus 1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~ 80 (112)
T cd01611 1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL 80 (112)
T ss_pred CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 89 PQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 89 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|++|++||+||++|||+||||||+||+++|||
T Consensus 81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG 112 (112)
T cd01611 81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112 (112)
T ss_pred CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence 99999999999999999999999999999999
No 3
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=100.00 E-value=9.5e-50 Score=282.56 Aligned_cols=109 Identities=24% Similarity=0.482 Sum_probs=106.1
Q ss_pred CCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceE-EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKY-LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 7 ~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kf-lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
++||++||||+|++|+++||+|||+|||||||++++++ +++|| |||+|+||+||+++||+||+|++++ +|||||
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn 76 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE 76 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence 57999999999999999999999999999999999887 89999 6999999999999999999999999 999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|.+|+++++||+||++|||+||||||+||+++|||
T Consensus 77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG 111 (121)
T PTZ00380 77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMG 111 (121)
T ss_pred CccCCccchHHHHHHHhcCCCCeEEEEEccccccc
Confidence 99999999999999999999999999999999999
No 4
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=100.00 E-value=3.3e-49 Score=274.05 Aligned_cols=104 Identities=58% Similarity=1.120 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHH
Q 033384 17 ERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMD 96 (120)
Q Consensus 17 ~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~ 96 (120)
+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||++|+|+++++|||||||.+|+++++||
T Consensus 1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCeEEEEecccccCC
Q 033384 97 SIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 97 ~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
+||++|||+||||||+||++++||
T Consensus 81 elY~~~kdeDGFLY~~Ys~e~tFG 104 (104)
T PF02991_consen 81 ELYEKYKDEDGFLYMTYSSEETFG 104 (104)
T ss_dssp HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred HHHHHhCCCCCeEEEEeccccccC
Confidence 999999999999999999999999
No 5
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=100.00 E-value=1e-33 Score=190.87 Aligned_cols=84 Identities=24% Similarity=0.475 Sum_probs=79.0
Q ss_pred EEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 36 IIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 36 IvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.|.-.+-+++|+|+++||+||+++||++|+.+||+||++++++|||||||| ++|++|++||+||++| |+||||||+||
T Consensus 3 ~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 3 TIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred EEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 344445589999999999999999999999999999999999999999999 7999999999999999 89999999999
Q ss_pred ccccCC
Q 033384 115 TEKTFG 120 (120)
Q Consensus 115 ~~~~fG 120 (120)
+++|||
T Consensus 82 ~~~afG 87 (87)
T cd01612 82 KTVAFG 87 (87)
T ss_pred CccccC
Confidence 999999
No 6
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=99.92 E-value=2.9e-25 Score=149.65 Aligned_cols=78 Identities=24% Similarity=0.560 Sum_probs=58.5
Q ss_pred CCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 42 RTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 42 ~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
-+++|.|+++||.|.++.||+.++.+||++|+++++++||+|||+ |.|++|+++|+||++|+ .||.|.|+||.++|||
T Consensus 9 iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~A~G 87 (87)
T PF04110_consen 9 IGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTPAWG 87 (87)
T ss_dssp ETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS---
T ss_pred cCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEecccccC
Confidence 378999999999999999999999999999999999999999999 99999999999999998 8999999999999999
No 7
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.5e-24 Score=148.22 Aligned_cols=86 Identities=26% Similarity=0.526 Sum_probs=79.4
Q ss_pred CcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEE
Q 033384 32 RVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLY 110 (120)
Q Consensus 32 ~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLy 110 (120)
+|-|.+ + +-+++|.|+++||.|+.+.||+.++.+|||+|+|++.++||||||| |+|++|+.+|+||+||+ .||.|.
T Consensus 30 kV~i~l-~-aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lv 106 (116)
T KOG3439|consen 30 KVQIRL-R-AIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLV 106 (116)
T ss_pred eEEEEE-e-ccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEE
Confidence 444444 3 3389999999999999999999999999999999999999999999 99999999999999996 899999
Q ss_pred EEecccccCC
Q 033384 111 MCYSTEKTFG 120 (120)
Q Consensus 111 l~Ys~~~~fG 120 (120)
++||...|||
T Consensus 107 l~Yc~s~A~G 116 (116)
T KOG3439|consen 107 LNYCISVAWG 116 (116)
T ss_pred EEEeeecccC
Confidence 9999999999
No 8
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=96.59 E-value=0.005 Score=46.82 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHH---hhCCCCcceEEEccCCCCCCCCccceEEec---CCCchHhHHHHHhhhc--CCCCCCeEEEEE
Q 033384 13 HSFDERLEESKAIV---AKYPDRVPVIIEKYSRTDLPDMEKTKYLVP---RDMSMGHFIYILSSRL--HLEPGKALFVFV 84 (120)
Q Consensus 13 ~~~e~R~~e~~~~r---~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~l--~l~~~~slfl~V 84 (120)
+.|++=..-..++. ..-..+|||.|-.... .|.++..--... ...|++++...+=--+ .-+......+++
T Consensus 88 ~~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~ii 165 (197)
T PF04106_consen 88 HDFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVII 165 (197)
T ss_dssp T-HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEE
T ss_pred hCHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEE
Confidence 34444444455555 5667899999987643 233332211111 2347777655443222 113345677889
Q ss_pred cCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 85 NNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 85 n~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
++-.++.|+.|..||+.+...||||||.-+
T Consensus 166 hGI~ipldtpl~~l~~~l~~~D~FLhivv~ 195 (197)
T PF04106_consen 166 HGIEIPLDTPLQWLYENLSYPDGFLHIVVR 195 (197)
T ss_dssp TTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred eCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence 997777799999999999999999999753
No 9
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=95.52 E-value=0.13 Score=41.87 Aligned_cols=88 Identities=13% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCCCcceEEEccCCCCCCCCccc-----------------eEEecCCCchHhHHHHHhhhc--------------CCCCC
Q 033384 29 YPDRVPVIIEKYSRTDLPDMEKT-----------------KYLVPRDMSMGHFIYILSSRL--------------HLEPG 77 (120)
Q Consensus 29 yp~~ipVIvE~~~~~~~p~L~k~-----------------Kflv~~~~tv~~~~~~lRk~l--------------~l~~~ 77 (120)
-+.||+-++.++..+..|.+... |.-.+.-+.|..+...|-.|+ .+.++
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 34677788888874444555544 888899999999999999999 45788
Q ss_pred CeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 78 KALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 78 ~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
+.|=|+||+.+.+++++|+.|=.-+=-..|-|.+.|...
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 999999999889999999999888434688999999753
No 10
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=93.29 E-value=0.23 Score=30.92 Aligned_cols=50 Identities=8% Similarity=0.207 Sum_probs=40.4
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+.-.|.|..+.+++.++...+++.++++.+++-|+.++....++.|++++
T Consensus 11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 35678899999999999999999999986677777888656777788775
No 11
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=91.77 E-value=0.26 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=59.8
Q ss_pred CCCCCccceEE-ecCCCchHhHHHHHhhhcC-CCCCCeEEEEEcCccCCCCchHHHHHhhccC--CCCeEEEEeccc
Q 033384 44 DLPDMEKTKYL-VPRDMSMGHFIYILSSRLH-LEPGKALFVFVNNTLPQTASRMDSIYKSFKD--ADGFLYMCYSTE 116 (120)
Q Consensus 44 ~~p~L~k~Kfl-v~~~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd--~DGfLyl~Ys~~ 116 (120)
.++.|. ++|+ +++..|+.++..++++++. +...-.+=+++|+.+..-+.||.++.-.+.. .||-|-+.|...
T Consensus 159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~ 234 (331)
T KOG2660|consen 159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVK 234 (331)
T ss_pred cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEeccc
Confidence 355555 6777 9999999999999999998 7766677788888888999999998887766 499999999843
No 12
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.13 E-value=0.96 Score=30.09 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=42.8
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc----C-ccCCCCchHHHHHhhccCCCCeEEE
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN----N-TLPQTASRMDSIYKSFKDADGFLYM 111 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn----~-~lp~~~~~~~~lY~~~kd~DGfLyl 111 (120)
-||.+.+++++...|++||++++ +.+.|.-. + ..|-.|+.|.+.+.+=+ ||-|-+
T Consensus 16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL 75 (80)
T cd06406 16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL 75 (80)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence 48999999999999999999984 45666544 2 45667889999988876 666544
No 13
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=89.29 E-value=2.9 Score=31.24 Aligned_cols=61 Identities=23% Similarity=0.397 Sum_probs=47.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc-C-cc-CCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN-N-TL-PQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn-~-~l-p~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
-+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+.+..
T Consensus 18 ~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~~l~l 81 (162)
T PF13019_consen 18 SLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFITLRL 81 (162)
T ss_pred EeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-CceEEEE
Confidence 4569999999999999999999988877778776 4 44 46777888888777543 5766654
No 14
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=86.20 E-value=2.7 Score=24.76 Aligned_cols=46 Identities=2% Similarity=-0.018 Sum_probs=34.8
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
..+-|+.+.|++++...|.++.+++++. +=|+.++.....+.++++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence 3466999999999999999999997653 445567755666667655
No 15
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=16 Score=29.46 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhh----CCCCcceEEEcc--C-------CCCCCCCccceEEecCCCchHhHHHHHhhhcC--------
Q 033384 15 FDERLEESKAIVAK----YPDRVPVIIEKY--S-------RTDLPDMEKTKYLVPRDMSMGHFIYILSSRLH-------- 73 (120)
Q Consensus 15 ~e~R~~e~~~~r~k----yp~~ipVIvE~~--~-------~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~-------- 73 (120)
|++=..-+.++..- .+-+||+.+--+ + +...|. .-.+|-+.+.+-.+|.+++.
T Consensus 162 fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~------~~~~d~~~stlge~l~d~~~~s~~s~d~ 235 (278)
T KOG2976|consen 162 FDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC------ISQPDGSLSTLGEFLKDRLPDSLDSKDD 235 (278)
T ss_pred HHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce------eecCchhhhhhhHHHHhhcccccCcccc
Confidence 33333344444444 888999999843 1 122331 11223334444445566663
Q ss_pred CCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 74 LEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 74 l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
....+. +.+.+--++....+..||......||||||+.
T Consensus 236 ~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l 273 (278)
T KOG2976|consen 236 INGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL 273 (278)
T ss_pred ccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence 222233 45556556778899999999999999999975
No 16
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=82.21 E-value=6.4 Score=25.86 Aligned_cols=59 Identities=7% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC
Q 033384 46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd 104 (120)
|.+--+.+-||++..+..++.+--...++++..+.-+--++.-..+.++-|+++-+|..
T Consensus 13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs 71 (76)
T PF03671_consen 13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS 71 (76)
T ss_dssp STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence 56777888999999999999999999999999885443334666888999999999964
No 17
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=82.06 E-value=6.2 Score=21.39 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=31.2
Q ss_pred CccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccC
Q 033384 48 MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLP 89 (120)
Q Consensus 48 L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp 89 (120)
.....+.++.+.|++++...|..+.+.. .+...|++|+ .++
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~~~ 48 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKILP 48 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeECC
Confidence 4556678889999999999999998854 4456777776 443
No 18
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=79.78 E-value=8 Score=25.22 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=38.9
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+...|.|..+.+++.++..+..+.++++++--|+| ++.....+.|++++
T Consensus 22 ~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G~~L~~~~T~~~l 70 (87)
T cd01763 22 NEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DGQRIRDNQTPDDL 70 (87)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CCeECCCCCCHHHc
Confidence 44568899999999999999999999987655555 55555567788776
No 19
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=79.46 E-value=13 Score=23.25 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=47.7
Q ss_pred ccceEEec-CCCchHhHHHHHhhhcCCCCCCeEEEEEcC---c-cCCCCchHHHHHhhccC-CCCeEEEE
Q 033384 49 EKTKYLVP-RDMSMGHFIYILSSRLHLEPGKALFVFVNN---T-LPQTASRMDSIYKSFKD-ADGFLYMC 112 (120)
Q Consensus 49 ~k~Kflv~-~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~---~-lp~~~~~~~~lY~~~kd-~DGfLyl~ 112 (120)
+...|.++ .+.|+.+|...|++++++....-.+=|.+. . ..+.++.+.+..+.++. .++.|.|.
T Consensus 10 ~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~ 79 (81)
T cd05992 10 EIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLF 79 (81)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEE
Confidence 34567888 999999999999999998764555556653 3 33777889888888865 46666554
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=79.13 E-value=2 Score=26.26 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=37.2
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.+-|+.+.||+++...|-.+.++++++ +-|+.++.....+.+|+++
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence 355999999999999999999988764 5566677555888888876
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=77.33 E-value=3.8 Score=26.13 Aligned_cols=45 Identities=4% Similarity=0.085 Sum_probs=36.5
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEE--EcCccCCCCchHHHH
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVF--VNNTLPQTASRMDSI 98 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~--Vn~~lp~~~~~~~~l 98 (120)
=|+.+.|+++|...|-.+.+++++.-=.+| +.+.++..+.+++++
T Consensus 15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 488999999999999999999887555565 456677788888877
No 22
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=77.17 E-value=6.3 Score=26.50 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=36.3
Q ss_pred ccceEEecC-----CCchHhHHHHHhhhcCCCCCCeEEE-EEcC---c-cCCCCchHHHHHhh
Q 033384 49 EKTKYLVPR-----DMSMGHFIYILSSRLHLEPGKALFV-FVNN---T-LPQTASRMDSIYKS 101 (120)
Q Consensus 49 ~k~Kflv~~-----~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~---~-lp~~~~~~~~lY~~ 101 (120)
+...|-+|. +.++.++...|++++++++...+-| |-.. . ....|.-+.+.-+.
T Consensus 10 ~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 10 TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 345788885 7999999999999999987444333 4442 2 33566666665555
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=75.60 E-value=20 Score=23.52 Aligned_cols=62 Identities=8% Similarity=0.041 Sum_probs=41.7
Q ss_pred eEEe--cCCCchHhHHHHHhhhcC-CCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLV--PRDMSMGHFIYILSSRLH-LEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv--~~~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
-|-| +.+.||+++...|....+ ..+.+..=|.-.+.+...+.+|++..+.-. ++--+++-|+
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~-~~~tiHLV~~ 79 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQD-EYHMVHLVCA 79 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhccc-CCceEEEEeC
Confidence 3666 789999999999988764 332233334445566788999999987753 3335666553
No 24
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=75.55 E-value=17 Score=24.69 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=46.9
Q ss_pred CCCCCccceEEecCCCchHhHHHHHhhhc-CCCCCCeEEEEEcCccCCCCchHHHHHhhc---------cCCCC----eE
Q 033384 44 DLPDMEKTKYLVPRDMSMGHFIYILSSRL-HLEPGKALFVFVNNTLPQTASRMDSIYKSF---------KDADG----FL 109 (120)
Q Consensus 44 ~~p~L~k~Kflv~~~~tv~~~~~~lRk~l-~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~---------kd~DG----fL 109 (120)
.+|+|.=. +--|.+.|+.++...||.++ .-.+...|=|.-++.+.+.++.++..-... |..++ -.
T Consensus 10 sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~~~~~~~~~gk~~~~~~~~~~ 88 (97)
T PF10302_consen 10 SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLPTARSSKGKGKAPERQEAPRI 88 (97)
T ss_pred CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccccccCccccCcCccCCCCCeE
Confidence 67875311 00458899999999999999 445566777766776666666666555544 22333 77
Q ss_pred EEEecc
Q 033384 110 YMCYST 115 (120)
Q Consensus 110 yl~Ys~ 115 (120)
||+.+.
T Consensus 89 yIhCsI 94 (97)
T PF10302_consen 89 YIHCSI 94 (97)
T ss_pred EEEEec
Confidence 877664
No 25
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=75.25 E-value=7.2 Score=26.27 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHhhhcCCC--CCCeEEEEEcC--ccCCCCc----hHHHHHhhccCCCC
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLE--PGKALFVFVNN--TLPQTAS----RMDSIYKSFKDADG 107 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~--~~~slfl~Vn~--~lp~~~~----~~~~lY~~~kd~DG 107 (120)
-..|+++.|..++....-.+..+. ..-+||+||++ +..++|+ .=++|-..-.-.++
T Consensus 17 TL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~Pq~ika~L~~~~~~~~f 80 (87)
T cd01776 17 TLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTYPQRIKAELHSRPQPNTF 80 (87)
T ss_pred eeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccccceechhhccCCCCcce
Confidence 457999999999999999999875 46799999997 4555444 33555554443443
No 26
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=75.19 E-value=17 Score=24.10 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=49.4
Q ss_pred ccceEEecC--CCchHhHHHHHhhhcCCCCCCeEEE-EEcC----ccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 49 EKTKYLVPR--DMSMGHFIYILSSRLHLEPGKALFV-FVNN----TLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 49 ~k~Kflv~~--~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~----~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+...|.++. +.++.++...|+++.+++ ++-+ |+++ .+.+.+..+.+.++.+....+.|-|+..
T Consensus 10 d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~ 79 (81)
T cd06396 10 ESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVY 79 (81)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEe
Confidence 456789988 789999999999999998 3333 6663 5668888999998888766777777653
No 27
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=74.79 E-value=11 Score=23.07 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=41.1
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCC-eEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADG-FLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DG-fLyl~Ys 114 (120)
.+-|+.+.|++++...|..+.+++++.--++ .++.....+.++++. .-.|| .|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~----~i~~g~~i~l~~~ 72 (76)
T cd01806 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADY----KLEGGSVLHLVLA 72 (76)
T ss_pred EEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHc----CCCCCCEEEEEEE
Confidence 3569999999999999999999987754444 566555667777663 33333 7777654
No 28
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.17 E-value=19 Score=22.57 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=46.3
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC---c-cCCCCchHHHHHhhccCC-CCeEEE
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN---T-LPQTASRMDSIYKSFKDA-DGFLYM 111 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~---~-lp~~~~~~~~lY~~~kd~-DGfLyl 111 (120)
+...|.+|.+.|+.+|...|.+++++..+.-..-|.++ . ..+.++.|....+.++.. .+.|-|
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l 78 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRL 78 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEE
Confidence 35567899999999999999999998765555567763 3 347788888888887643 344443
No 29
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=72.25 E-value=14 Score=21.85 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=39.0
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
.+-++.+.|++++...|.++.+++++.- =|..++.....+.++++ |.- + ++..+|+..
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~-~l~~~g~~l~d~~~l~~-~~v-~-~~~~i~v~~ 68 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQQ-RLIYAGKILKDDKTLSD-YGI-Q-DGSTLHLVL 68 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCcCCCCcCCHHH-CCC-C-CCCEEEEEE
Confidence 4568889999999999999999877643 33556644566677765 221 1 344666653
No 30
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=71.74 E-value=7.8 Score=24.20 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=34.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+-|+.+.||+++...|..+.++++++ .-|+.++.....+.++++.
T Consensus 15 l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~~ 59 (74)
T cd01807 15 LQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSDY 59 (74)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHHC
Confidence 45889999999999999999998643 5556777666667777653
No 31
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=70.98 E-value=10 Score=23.53 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=38.7
Q ss_pred EEecCCCchHhHHHHHhhhcCC--CCCCeEEEEEcCccCCCCchHHHHHhhccCCC-CeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHL--EPGKALFVFVNNTLPQTASRMDSIYKSFKDAD-GFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l--~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~D-GfLyl~Y 113 (120)
+=|+.+.||+++...|..+.++ ++++ .-|..++.....+.++++ | +-.| ..|++.-
T Consensus 15 l~v~~~~TV~~lK~~i~~~~~i~~~~~~-q~L~~~G~~L~d~~~L~~-~---~i~~~~~i~~~~ 73 (77)
T cd01805 15 IEVDPDDTVAELKEKIEEEKGCDYPPEQ-QKLIYSGKILKDDTTLEE-Y---KIDEKDFVVVMV 73 (77)
T ss_pred EEECCCCcHHHHHHHHHHhhCCCCChhH-eEEEECCEEccCCCCHHH-c---CCCCCCEEEEEE
Confidence 4488999999999999999888 5543 445567765567777877 3 2333 3666643
No 32
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=70.10 E-value=9.2 Score=23.55 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=40.1
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEE
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMC 112 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~ 112 (120)
+-|.++.|++++...|-.+.+++++ ..-|+.++.....+.++++ |.-- ++-.|++.
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~-~q~Li~~G~~L~d~~~l~~-~~i~--~~stl~l~ 68 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPD-QLRVIFAGKELRNTTTIQE-CDLG--QQSILHAV 68 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHH-HeEEEECCeECCCCCcHHH-cCCC--CCCEEEEE
Confidence 4588999999999999999999765 4566677755577788888 4332 23355553
No 33
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=68.45 E-value=8.8 Score=30.35 Aligned_cols=34 Identities=18% Similarity=0.567 Sum_probs=29.7
Q ss_pred CCccccCCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 7 KSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 7 ~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
..+++..|+|+|..-++.+++++| .+||+|..-.
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~-~~pi~vD~md 191 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFP-QCPIVVDTMD 191 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCC-CCCEEEEccC
Confidence 578888899999999999999997 5899997643
No 34
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=66.88 E-value=29 Score=21.83 Aligned_cols=65 Identities=6% Similarity=-0.006 Sum_probs=45.6
Q ss_pred CccceEEecCCCchHhHHHHHhhhcCCCCCCe-EEE--EEc--C--ccCCCCchHHHHHhhccCC--CCeEEEE
Q 033384 48 MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKA-LFV--FVN--N--TLPQTASRMDSIYKSFKDA--DGFLYMC 112 (120)
Q Consensus 48 L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~s-lfl--~Vn--~--~lp~~~~~~~~lY~~~kd~--DGfLyl~ 112 (120)
..-+.+.|+.+.|+++++..+-+++++..+.. ..| +.. + .....++..-++....... ++.+++.
T Consensus 16 ~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~~f~lr 89 (93)
T PF00788_consen 16 STYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNSRFVLR 89 (93)
T ss_dssp CSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTEEEEEE
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCceEEEEE
Confidence 34667889999999999999999999943333 333 222 2 3456777777777777653 6666664
No 35
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=66.50 E-value=8.5 Score=25.98 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=31.5
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc-C---ccCCCCchHHH--HHh
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN-N---TLPQTASRMDS--IYK 100 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn-~---~lp~~~~~~~~--lY~ 100 (120)
..++..||+.+...+|+.+.++.+-.|+-+-+ | -|-.++.|+.+ ||+
T Consensus 19 ~FSk~DTI~~v~~~~rklf~i~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~ 71 (88)
T PF14836_consen 19 QFSKTDTIGFVEKEMRKLFNIQEETRLWNKYSENSYELLNNPEITVEDAGLYD 71 (88)
T ss_dssp EE-TTSBHHHHHHHHHHHCT-TS-EEEEEECTTTCEEEE--TTSBTTTTT--T
T ss_pred hccccChHHHHHHHHHHHhCCCccceehhccCCcchhhhCCCCccHHHccCcC
Confidence 47889999999999999999987888887655 3 24466667755 554
No 36
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=64.74 E-value=31 Score=21.41 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=41.8
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|..+.||+++...|-.+-+++++ ..-|+.++.....+.++++ |.- ++ +-.|++.-.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~G~~L~D~~tL~~-~~i-~~-~~tl~l~~~ 70 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQAD-QFWLSFEGRPMEDEHPLGE-YGL-KP-GCTVFMNLR 70 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHH-HeEEEECCEECCCCCCHHH-cCC-CC-CCEEEEEEE
Confidence 5688999999999999988888764 3455567766677888987 433 23 447777643
No 37
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=64.67 E-value=18 Score=22.09 Aligned_cols=59 Identities=7% Similarity=0.101 Sum_probs=40.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++. .=|+.++.....+.++++ |.-. ++..+++...
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~~~-q~L~~~g~~L~d~~~L~~-~~i~--~~~~i~l~~~ 72 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD-YNIQ--KESTLHLVLR 72 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCcHHH-cCCC--CCCEEEEEEE
Confidence 356999999999999999999987653 334457765666777776 3321 2346666554
No 38
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=63.95 E-value=22 Score=21.47 Aligned_cols=45 Identities=2% Similarity=0.112 Sum_probs=33.9
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
.+-++.+.|++++...|.++.+++++. .=|..++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVGIPVEQ-QRLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCEECCCcCcHHH
Confidence 466889999999999999999987653 333347766666777766
No 39
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=62.46 E-value=13 Score=23.28 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHh
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYK 100 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~ 100 (120)
.+-|+.+.||+++...|..+-++++++- =|+.++.....+.++++ |.
T Consensus 12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q-~Li~~G~~L~D~~~l~~-~~ 58 (70)
T cd01794 12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQ-RWFFSGKLLTDKTRLQE-TK 58 (70)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH-cC
Confidence 3568899999999999999888886543 33456666777888887 43
No 40
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=61.92 E-value=35 Score=20.97 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=39.6
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
.+-|..+.||+++...|.++.++++ +.+-|..++.....+.++++. . -+ ++..|+|.-
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~-~~~~Li~~Gk~L~d~~tL~~~-~-i~-~~stl~l~~ 70 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQ-EQLVLIFAGKILKDTDTLTQH-N-IK-DGLTVHLVI 70 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCcHHHc-C-CC-CCCEEEEEE
Confidence 4568899999999999998888764 344554466555666777663 1 22 455787753
No 41
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=61.13 E-value=9.3 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.9
Q ss_pred ccccCCHHHHHHHHHHHHhh
Q 033384 9 FKTEHSFDERLEESKAIVAK 28 (120)
Q Consensus 9 fk~~~~~e~R~~e~~~~r~k 28 (120)
=....|||+|.++++..|++
T Consensus 34 ~~~~kSlEERE~eY~~AR~R 53 (59)
T PF12752_consen 34 KRPSKSLEEREAEYAEARAR 53 (59)
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 35567999999999999875
No 42
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=60.81 E-value=38 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCccceEEecCCCchHhHHHHHhhhc-CCCCCCeEEEEEcCc
Q 033384 47 DMEKTKYLVPRDMSMGHFIYILSSRL-HLEPGKALFVFVNNT 87 (120)
Q Consensus 47 ~L~k~Kflv~~~~tv~~~~~~lRk~l-~l~~~~slfl~Vn~~ 87 (120)
.+...-|.||.+.|..++...|.+-| .....-..=++||+.
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~ 55 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGE 55 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCE
Confidence 45667899999999999999999998 666666666788873
No 43
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=59.35 E-value=29 Score=22.10 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=36.9
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEE
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYM 111 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl 111 (120)
.+-|+.+.||+++...|-.+-+++++. .-||-+..+-..+.++++ |.-. +++-.||+
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~-QrL~~G~~L~dD~~tL~~-ygi~-~~g~~~~l 72 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAV-QRWVIGQRLARDQETLYS-HGIR-TNGDSAFL 72 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-EEEEcCCeeCCCcCCHHH-cCCC-CCCCEEEE
Confidence 356899999999999999999998753 233443354445577766 3332 23335555
No 44
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=59.17 E-value=11 Score=29.42 Aligned_cols=58 Identities=16% Similarity=0.385 Sum_probs=36.7
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc---C--ccCCCCchHHHHHhhccCCCC-eEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN---N--TLPQTASRMDSIYKSFKDADG-FLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~--~lp~~~~~~~~lY~~~kd~DG-fLyl~Y 113 (120)
.+.|+.+.+++++...|+++++++++..|-||-. + ....++.++.+ .+- .|| .|+.+-
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~--~el--~~GdIi~fQ~ 151 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEK--AEL--QDGDIICFQR 151 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHH--TT----TTEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhh--ccc--CCCCEEEEEe
Confidence 4579999999999999999999999999988876 2 12266677776 222 233 666554
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=57.99 E-value=16 Score=22.75 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=36.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEE
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMC 112 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~ 112 (120)
.-|+++.||+++...|-.+-++++++ .-|+.++.....+...-+-|. -+ ++.+|++.
T Consensus 14 l~v~~~~TV~~lK~~I~~~~gip~~~-q~Li~~Gk~L~D~~~~L~~~g-i~-~~~~l~l~ 70 (71)
T cd01796 14 LDVDPDLELENFKALCEAESGIPASQ-QQLIYNGRELVDNKRLLALYG-VK-DGDLVVLR 70 (71)
T ss_pred EEECCcCCHHHHHHHHHHHhCCCHHH-eEEEECCeEccCCcccHHHcC-CC-CCCEEEEe
Confidence 45889999999999999999998754 344455544444433333332 22 34477663
No 46
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=57.11 E-value=21 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=31.2
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
+-|+.+.|++++...|...-+++++. .-|+.++.....+.++++
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRD-QKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHH-eEEeeCCcccCccCcHHH
Confidence 45889999999999999998987653 334455544445556654
No 47
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=56.90 E-value=24 Score=23.15 Aligned_cols=54 Identities=13% Similarity=0.333 Sum_probs=39.3
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEE-EEcC----ccCCCCchHHHHHhhc
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFV-FVNN----TLPQTASRMDSIYKSF 102 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~----~lp~~~~~~~~lY~~~ 102 (120)
+.-.|-+|.+.++.++...|++++++.....+-| |..+ .+.+.++-+.+..+-+
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~ 68 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVY 68 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHH
Confidence 4457889999999999999999999975345554 6663 3457777776644444
No 48
>PTZ00044 ubiquitin; Provisional
Probab=56.49 E-value=21 Score=22.09 Aligned_cols=45 Identities=4% Similarity=0.101 Sum_probs=32.8
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
.+-|..+.|++++...|..+.++++++--.+ .++.....+.++++
T Consensus 14 ~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~~ 58 (76)
T PTZ00044 14 SFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLSD 58 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHHH
Confidence 4568999999999999999999987543333 45644556667654
No 49
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=55.87 E-value=38 Score=21.04 Aligned_cols=59 Identities=3% Similarity=-0.049 Sum_probs=41.8
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEE
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMC 112 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~ 112 (120)
...+-|.++.||+++...|-.+-++++++ .-|+.++.....+.++++ |.-- ++--|++.
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~Li~~Gk~L~D~~tL~~-~~i~--~~~tl~l~ 68 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVED-QVLLLAGVPLEDDATLGQ-CGVE--ELCTLEVA 68 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHH-EEEEECCeECCCCCCHHH-cCCC--CCCEEEEE
Confidence 34566899999999999999998887654 445566766777888887 5432 23355554
No 50
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=54.81 E-value=31 Score=21.53 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=43.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC----ccCCCCchHHHHHhhccC
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN----TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~----~lp~~~~~~~~lY~~~kd 104 (120)
+-++.+.++.+|...|++++++.+..-..-|.+. ...+.+..+.+..+.++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 6799999999999999999999877777778873 344888888888888765
No 51
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=54.52 E-value=28 Score=22.08 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=37.5
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
-|+++.||+++...|-.+-+++++.-=.+|. +.+...+.++++ |. -+ ++--++|-|
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~~-yg-i~-~~stv~l~~ 72 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLGD-YE-IH-DGMNLELYY 72 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHHH-cC-CC-CCCEEEEEe
Confidence 4889999999999998887888765444454 555556667776 32 22 233555555
No 52
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=50.91 E-value=31 Score=25.75 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCC---CccceEEecCCCchHhHHHHHh-----hhcCCCCCCeEEEE
Q 033384 12 EHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPD---MEKTKYLVPRDMSMGHFIYILS-----SRLHLEPGKALFVF 83 (120)
Q Consensus 12 ~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~---L~k~Kflv~~~~tv~~~~~~lR-----k~l~l~~~~slfl~ 83 (120)
-.|+|+|.+-.++.....|+- -|.... +=+-+ -...+++|..=-++++|-+.+. ++|.- .=+++||.
T Consensus 45 lFsleER~~l~~~~~~~l~nV---~V~~f~-~Llvd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~-eveTvFl~ 119 (159)
T COG0669 45 LFSLEERVELIREATKHLPNV---EVVGFS-GLLVDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAP-EVETVFLM 119 (159)
T ss_pred CcCHHHHHHHHHHHhcCCCce---EEEecc-cHHHHHHHHcCCCEEEEeccccchHHHHHHHHHHHHhhcc-cccEEEec
Confidence 479999999999998888874 333332 11111 1345789999888988876654 33322 35899997
Q ss_pred EcC-ccCCCCchHHHHHhhccCCCCeE
Q 033384 84 VNN-TLPQTASRMDSIYKSFKDADGFL 109 (120)
Q Consensus 84 Vn~-~lp~~~~~~~~lY~~~kd~DGfL 109 (120)
-.. ...=.++.+.+|..--.|-++|+
T Consensus 120 ~s~~~~~iSSs~Vreia~~ggdvs~~V 146 (159)
T COG0669 120 PSPEYSFISSSLVREIAAFGGDVSEFV 146 (159)
T ss_pred CCcceehhhHHHHHHHHHhCCCchhhC
Confidence 776 55566778888887777666553
No 53
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=50.17 E-value=12 Score=24.46 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=30.5
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC----ccC-CCCchHHHHHhhccCCCCeEEEE
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN----TLP-QTASRMDSIYKSFKDADGFLYMC 112 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~----~lp-~~~~~~~~lY~~~kd~DGfLyl~ 112 (120)
.+.-++.+.|++++...|...++++.. +..||.+. .+. +.+.+++++==+|. | .||+.
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~~~~~l~s~~~~tl~~lglkHG--d-mlyL~ 78 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRNNKEELKSSDSKTLSSLGLKHG--D-MLYLK 78 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGGGGGCSSS-TT-CCCCT---TT----EEE--
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCCCCcccccCCcCCHHHcCCCCc--c-EEEEe
Confidence 345689999999999999999998855 55666663 122 45566666655554 2 66653
No 54
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=49.83 E-value=14 Score=28.09 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=29.5
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCC--CeEEEE-E-cC---ccCCCCchHHHH
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPG--KALFVF-V-NN---TLPQTASRMDSI 98 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~--~slfl~-V-n~---~lp~~~~~~~~l 98 (120)
+.-.++||++-||+++...++++++++++ ..|-++ | |+ ...+.+..+++|
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 45678999999999999999999998654 334332 3 33 356788888888
No 55
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=46.86 E-value=29 Score=22.00 Aligned_cols=58 Identities=7% Similarity=0.072 Sum_probs=37.8
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCC-eEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGK-ALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~-slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
-|+.+.||+++...|-++.+++++. .|.+..++.....+.++++ |. -+ ++..|++.-+
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~-~g-i~-~gs~l~l~~~ 76 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVS-QG-LG-PGSTVLLVVQ 76 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHH-cC-CC-CCCEEEEEEE
Confidence 3688999999999999888887543 3322224455556667765 32 22 4558887655
No 56
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=44.52 E-value=44 Score=20.94 Aligned_cols=58 Identities=3% Similarity=0.062 Sum_probs=39.2
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|+.+.||++|...|....+++++. .=|..++.....+.++++. . -+ ++..|+|.-.
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~~~-~-i~-~g~~l~v~~~ 69 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGK-QKLQYEGIFIKDSNSLAYY-N-LA-NGTIIHLQLK 69 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEEcCCCCcHHHc-C-CC-CCCEEEEEEe
Confidence 34889999999999999998987653 3444566656667777643 2 22 3446766543
No 57
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=43.80 E-value=83 Score=22.62 Aligned_cols=88 Identities=13% Similarity=0.230 Sum_probs=53.6
Q ss_pred Cccc-cCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCc---cceEEecCCCchHhHHHHHh-----hhcCCC-CC
Q 033384 8 SFKT-EHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDME---KTKYLVPRDMSMGHFIYILS-----SRLHLE-PG 77 (120)
Q Consensus 8 ~fk~-~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~---k~Kflv~~~~tv~~~~~~lR-----k~l~l~-~~ 77 (120)
+.|. ..|+++|.+..+...+.+|+ |-|+. ...+-+-++. ...++|..=-.+++|-+.+. ++ |+ .=
T Consensus 39 p~K~~~~s~e~R~~~l~~~~~~~~~-v~v~~--~~~~l~v~~~~~~~a~~ivrGlR~~~DfeyE~~~a~~n~~--l~~~i 113 (140)
T PRK13964 39 PDKSNASDLDSRFKNVKNKLKDFKN-VEVLI--NENKLTAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKS--LNNDL 113 (140)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCC-cEEec--CcCCcHHHHHHHCCCeEEEEecCCCccHHHHHHHHHHHHh--hcCCC
Confidence 4454 36899999999999998886 43332 1111111111 33678777666766655444 33 43 34
Q ss_pred CeEEEEEcC-ccCCCCchHHHHHh
Q 033384 78 KALFVFVNN-TLPQTASRMDSIYK 100 (120)
Q Consensus 78 ~slfl~Vn~-~lp~~~~~~~~lY~ 100 (120)
+++||.... ...=.|+.+.+|..
T Consensus 114 etvfl~~~~~~~~iSSs~vre~~~ 137 (140)
T PRK13964 114 ETILIIPDYDKIEYSSTLLRHKKF 137 (140)
T ss_pred eEEEeecCCCCCEEeHHHHHHHHH
Confidence 799998875 55555666777653
No 58
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=42.42 E-value=87 Score=19.75 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
.-|+.+.||+++...|-++.+++++. .-|..++.....+ ++++. .-+ ++.+||+.-+-
T Consensus 16 l~v~~~~TV~~LK~~I~~~~~~~~~~-qrL~~~Gk~L~d~-~L~~~--gi~-~~~~i~l~~~~ 73 (78)
T cd01804 16 LSVPPDETVEGLKKRISQRLKVPKER-LALLHRETRLSSG-KLQDL--GLG-DGSKLTLVPTV 73 (78)
T ss_pred EEECCcCHHHHHHHHHHHHhCCChHH-EEEEECCcCCCCC-cHHHc--CCC-CCCEEEEEeec
Confidence 45899999999999999888887653 4444455444444 65552 222 45688887654
No 59
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.07 E-value=37 Score=23.37 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=22.8
Q ss_pred chHhHHHHHhhhcCCCC-CCeEEEEEcC
Q 033384 60 SMGHFIYILSSRLHLEP-GKALFVFVNN 86 (120)
Q Consensus 60 tv~~~~~~lRk~l~l~~-~~slfl~Vn~ 86 (120)
.+.-+..+++..++++| +.++|+|+|.
T Consensus 16 g~dgL~~lV~~~~~~dp~~g~~fvF~nr 43 (107)
T PF05717_consen 16 GIDGLAALVREELGLDPFSGDLFVFCNR 43 (107)
T ss_pred ChhHHHHHHHHhhcCCCCcceEEEEEec
Confidence 46778899999999874 6799999995
No 60
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=41.75 E-value=61 Score=25.23 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC--ccC
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN--TLP 89 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~--~lp 89 (120)
+||-|.+.+....+- ..-..-++..+|..++...|-++|+++|..--|.-+++ ..|
T Consensus 175 nrv~V~f~~~~~~~~---~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~~~~~P 232 (249)
T PF12436_consen 175 NRVEVEFKPKDNPND---PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNPYSGKP 232 (249)
T ss_dssp HEEEEEEEETTSTT------EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---TTS-S-
T ss_pred CeEEEEEEECCCCCC---CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEeccCCCCC
Confidence 567777766443332 24556699999999999999999999998777777764 445
No 61
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=40.91 E-value=54 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.1
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCC
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPG 77 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~ 77 (120)
-.|+++.|++++...|-+++++.+.
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~V~P~ 43 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFSVAPF 43 (107)
T ss_pred EEeCccccHHHHHHHHHHHhcCCcc
Confidence 3589999999999999999988765
No 62
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=40.73 E-value=82 Score=22.57 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCC------CcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEE
Q 033384 19 LEESKAIVAKYPD------RVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVF 83 (120)
Q Consensus 19 ~~e~~~~r~kyp~------~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~ 83 (120)
+.|.+.+.+.-|. ++|||+|..+ .++...|.|....-+--+..++.+......++.+++|
T Consensus 46 k~ELe~L~~~lp~~~~~~lrLPIile~~~-----~~~~g~~~V~g~~e~k~i~~ilg~~~~~~~~~~l~i~ 111 (132)
T PF01886_consen 46 KEELERLAEILPEYEWSKLRLPIILEIDP-----TLGEGSYRVRGKEEVKAISKILGKEREFEEEDELYIY 111 (132)
T ss_pred HHHHHHHHHhCCHHHHhceeccEEEEEec-----cCCCceEEEeCHHHHHHHHHHhCCCcccccCCeEEEc
Confidence 5677888888774 5899999964 3455677888877443333333333222224666664
No 63
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=39.68 E-value=64 Score=20.97 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=33.0
Q ss_pred ecCCCchHhHHHHHhhhcC--CCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEE
Q 033384 55 VPRDMSMGHFIYILSSRLH--LEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYM 111 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk~l~--l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl 111 (120)
-|.+.||+++...|..+.+ ..+.+..=|.-++.....+.+|++. . -+ ++.+|+|
T Consensus 17 ~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dy-g-I~-~gstlhL 72 (75)
T cd01815 17 SPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFY-G-IQ-SGSTIHI 72 (75)
T ss_pred CCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHc-C-CC-CCCEEEE
Confidence 4889999999999999963 4322222333345556677777652 1 11 3446665
No 64
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=39.38 E-value=26 Score=24.65 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=33.1
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCC----CeEEEEEcCc-cC----CCCchHHHHHhhc
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPG----KALFVFVNNT-LP----QTASRMDSIYKSF 102 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~----~slfl~Vn~~-lp----~~~~~~~~lY~~~ 102 (120)
-+|-|+.++|+++|+..++++.+++.+ ..-.||.. + .+ ..+++|.+|++.-
T Consensus 35 Dr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~-f~~~~~~~rl~~~i~elv~~v 94 (125)
T PF09358_consen 35 DRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSS-FPPPKHKERLKMPISELVEEV 94 (125)
T ss_dssp -EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEET-T-HHHHHHHTTSBHHHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEec-CChhhhHHHhCCcHHHHHHHh
Confidence 367899999999999999999987642 12223322 2 11 4677999999954
No 65
>PRK04115 hypothetical protein; Provisional
Probab=39.22 E-value=1.4e+02 Score=21.71 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCC-----CcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEE
Q 033384 20 EESKAIVAKYPD-----RVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVF 83 (120)
Q Consensus 20 ~e~~~~r~kyp~-----~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~ 83 (120)
.|.+.+.+--|. |+|+|+|..+. ...-.|.|....-+--+..+|-+......++.+++|
T Consensus 50 ~ELe~L~~~l~~~~~~lrLPIile~~~~-----~~~g~~~VrG~~evk~IskiLg~~~~~~e~~~l~ly 113 (137)
T PRK04115 50 RELEFLKELLDEDACRLRLPIILEIDSS-----LGEGAIVVRGKEEVKVISKILGKEDIFSEEDILYLY 113 (137)
T ss_pred HHHHHHHHhccchhhheeeeEEEEEecC-----CCceEEEEcCHHHHHHHHHHhCccccccCCCEEEEe
Confidence 455555555553 68999999762 233567787777443333333322222345666665
No 66
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.81 E-value=1.3e+02 Score=25.17 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=44.0
Q ss_pred CccceEE--ecCCCchHhHHHHHhhhcC---CCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 48 MEKTKYL--VPRDMSMGHFIYILSSRLH---LEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 48 L~k~Kfl--v~~~~tv~~~~~~lRk~l~---l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
++.++|. |..+.||+++...|...-+ ++.++ +-|..++.+...+.+|++ |. -+ ++.+|++--+.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GkiL~Dd~tL~d-y~-I~-e~~~Ivvmv~k 76 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQ-QKLIYSGKILSDDKTVRE-YK-IK-EKDFVVVMVSK 76 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhH-eEEEECCEECCCCCcHHH-cC-CC-CCCEEEEEecc
Confidence 3444454 7899999999999988876 65443 455567777778888877 32 22 46688876654
No 67
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=38.55 E-value=89 Score=19.75 Aligned_cols=55 Identities=15% Similarity=0.346 Sum_probs=39.8
Q ss_pred EEecCCCchHhHHHHHhhhc---CCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 53 YLVPRDMSMGHFIYILSSRL---HLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l---~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
|.-....|+.++...||+.- -+......|+.-||.- |-=+|+..+||-+..+|..
T Consensus 6 ~vp~~~~~v~d~K~~Lr~y~~~~I~~d~tGfYIvF~~~~--------Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 6 FVPVHGVTVEDFKKRLRKYRWDRIRDDRTGFYIVFNDSK--------EAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred cCCCCCccHHHHHHHHhcCCcceEEecCCEEEEEECChH--------HHHHHHHhcCCCEEEEEEE
Confidence 34445668888887777653 1456778998888732 7778888899999888863
No 68
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=37.25 E-value=44 Score=21.02 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=26.6
Q ss_pred eEEecCC-CchHhHHHHHhhhcC-C-CCCCeEEEEEcCcc
Q 033384 52 KYLVPRD-MSMGHFIYILSSRLH-L-EPGKALFVFVNNTL 88 (120)
Q Consensus 52 Kflv~~~-~tv~~~~~~lRk~l~-l-~~~~slfl~Vn~~l 88 (120)
.+-++.+ .|++++...|..+.. + .....+.++||+..
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~ 58 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEY 58 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEE
Confidence 3446766 899999999988864 2 22356789999843
No 69
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=37.18 E-value=1.2e+02 Score=19.95 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=42.1
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-----ccCCC-CchHHHHHhhccCCCCeEEE
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-----TLPQT-ASRMDSIYKSFKDADGFLYM 111 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-----~lp~~-~~~~~~lY~~~kd~DGfLyl 111 (120)
.+|...+++++...|.++|.+.++..-.=|-.. -+|-. ++.|.+.+.+=++.=.-|.+
T Consensus 12 ~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~ltLwc 75 (78)
T cd06411 12 RAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVADGPRGLQL 75 (78)
T ss_pred EccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhccCCceEEEE
Confidence 478899999999999999999987654445431 24544 88999999887754434433
No 70
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=36.75 E-value=70 Score=21.61 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=39.3
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|..+.||+++...|..+-++++++- =|+.++.....+.++++ |. -+ ++.-|++.-.
T Consensus 42 leV~~~~TV~~lK~kI~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d-y~-I~-~~stL~l~~~ 99 (103)
T cd01802 42 LRVSPFETVISVKAKIQRLEGIPVAQQ-HLIWNNMELEDEYCLND-YN-IS-EGCTLKLVLA 99 (103)
T ss_pred EEeCCCCcHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHH-cC-CC-CCCEEEEEEe
Confidence 459999999999999999988886542 23356655666677765 32 11 3446776543
No 71
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=36.62 E-value=60 Score=20.00 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=30.0
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEE
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFV 84 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~V 84 (120)
....|-|.++.|+.++...|-++|+|...+-.=|.+
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 345688999999999999999999999776655666
No 72
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=36.47 E-value=40 Score=21.17 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=33.2
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC---ccCCCC-chHHHH
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN---TLPQTA-SRMDSI 98 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~---~lp~~~-~~~~~l 98 (120)
.+-.-..+.+.|++++..+|...+........-|+.+- .+...+ .+|+++
T Consensus 17 ~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~ 70 (82)
T PF00789_consen 17 SRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA 70 (82)
T ss_dssp TEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC
T ss_pred CEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh
Confidence 33444577999999999999999877765435554442 233333 677666
No 73
>PRK13669 hypothetical protein; Provisional
Probab=36.13 E-value=26 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCeEEEEEcC---ccCCCCchHHHHHhhccC
Q 033384 77 GKALFVFVNN---TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 77 ~~slfl~Vn~---~lp~~~~~~~~lY~~~kd 104 (120)
....|.+||+ ..+.+++.+..||+.-++
T Consensus 44 ~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 44 SEGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred ccCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 3578999998 567888899999987653
No 74
>PRK06437 hypothetical protein; Provisional
Probab=33.79 E-value=75 Score=19.70 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=25.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRM 95 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~ 95 (120)
+=+++..|++++... |++++ +.+-+.+|+...+.+..+
T Consensus 15 ~~i~~~~tv~dLL~~----Lgi~~-~~vaV~vNg~iv~~~~~L 52 (67)
T PRK06437 15 IEIDHELTVNDIIKD----LGLDE-EEYVVIVNGSPVLEDHNV 52 (67)
T ss_pred EEcCCCCcHHHHHHH----cCCCC-ccEEEEECCEECCCceEc
Confidence 447888999998754 57764 567888999444444433
No 75
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=33.72 E-value=62 Score=21.67 Aligned_cols=49 Identities=8% Similarity=0.210 Sum_probs=33.1
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEE-EEcC---ccCCCCchHHHHHhhcc
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFV-FVNN---TLPQTASRMDSIYKSFK 103 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~---~lp~~~~~~~~lY~~~k 103 (120)
..||.+.++.+|..-||.++++. +.+-+ |.+. ...+.+.-|....+..+
T Consensus 16 i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDEGD~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 16 IMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDDGDMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcCCCCccccCHHHHHHHHHHHH
Confidence 45999999999999999999996 45555 3332 23355555555544443
No 76
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=33.56 E-value=47 Score=25.20 Aligned_cols=47 Identities=19% Similarity=0.472 Sum_probs=35.8
Q ss_pred CCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCC-eEEEEecccccCC
Q 033384 58 DMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADG-FLYMCYSTEKTFG 120 (120)
Q Consensus 58 ~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DG-fLyl~Ys~~~~fG 120 (120)
.++|+.++.-|++.+++...+ .-..++++|... ..|| |++| +.+.||
T Consensus 30 ~~~F~dii~EI~~~~~~s~~e------------i~~~i~~FYTdl-n~DgrFi~L---Gdn~Wg 77 (175)
T COG3343 30 PFNFSDIINEIQKLLGVSKEE------------IRSRIGQFYTDL-NIDGRFISL---GDNKWG 77 (175)
T ss_pred CccHHHHHHHHHHHhCcCHHH------------HHHHHHHHHHHh-ccCCceeec---cccccc
Confidence 688999999999999887543 135789999999 4565 7766 566666
No 77
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=33.02 E-value=22 Score=23.00 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=13.8
Q ss_pred ccCCCCeEEEEecccc
Q 033384 102 FKDADGFLYMCYSTEK 117 (120)
Q Consensus 102 ~kd~DGfLyl~Ys~~~ 117 (120)
+-|+||-+|+.|+.++
T Consensus 42 wiDe~G~vYi~~s~ee 57 (76)
T PF06970_consen 42 WIDENGNVYIIFSIEE 57 (76)
T ss_pred cCCCCCCEEEEeeHHH
Confidence 4689999999999875
No 78
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=32.75 E-value=1.7e+02 Score=20.15 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=32.9
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCC--CCeEEEEEcC--ccCCCCc
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEP--GKALFVFVNN--TLPQTAS 93 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~--~~slfl~Vn~--~lp~~~~ 93 (120)
.-+.+|-+.||+|++..|.++..+++ +-.|++.+++ .+..+++
T Consensus 15 ~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~E 61 (97)
T cd01775 15 TTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTE 61 (97)
T ss_pred EEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcC
Confidence 34678999999999999999998876 4567778887 4444444
No 79
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=32.16 E-value=76 Score=21.01 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccC
Q 033384 46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd 104 (120)
|.|.-+..-||++.-+.-+..+--...++++..|-- .-|+ .=..++++-|+++-+|..
T Consensus 13 p~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAi-iTndGvGINP~qtAGnvflkhgs 71 (82)
T cd01766 13 PKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAI-ITNDGIGINPAQTAGNVFLKHGS 71 (82)
T ss_pred CCCcceEEeccccCchHHHHHHHHHhcCCCccceeE-EecCccccChhhcccceeeecCC
Confidence 456666777999999999988888999999888744 3444 556888889999998863
No 80
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=31.00 E-value=1.5e+02 Score=18.97 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCCCccceEEecCCCchHhHHHHHhhhcCCCCCC-eEEEEEcC--ccCCCCchHHHH
Q 033384 45 LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGK-ALFVFVNN--TLPQTASRMDSI 98 (120)
Q Consensus 45 ~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~-slfl~Vn~--~lp~~~~~~~~l 98 (120)
+|+-..+.-.|.+.+|+.++..-+-++-+++++. .+|+..++ ..+..++.++.|
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L 62 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSL 62 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhh
Confidence 5677778888999999999999999988998653 34443334 445666665554
No 81
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=30.69 E-value=1.2e+02 Score=18.98 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=37.9
Q ss_pred CccceEEecCCCchHhHHHHHhhhcCCCC---CCeEEEEEcC----ccCCCCchHHHHHhhccC
Q 033384 48 MEKTKYLVPRDMSMGHFIYILSSRLHLEP---GKALFVFVNN----TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 48 L~k~Kflv~~~~tv~~~~~~lRk~l~l~~---~~slfl~Vn~----~lp~~~~~~~~lY~~~kd 104 (120)
-.-+-..|+++.|.++++..+-++.+++. .=+||-.+++ ....+++..-++......
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~ 75 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPR 75 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCC
Confidence 34455789999999999999999999983 2344444443 244556655555544443
No 82
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=30.54 E-value=37 Score=20.75 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=30.5
Q ss_pred cceEEecCCCchHhHHHHHhhhcC-CCCCCeEEEEEcC-ccCC
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLH-LEPGKALFVFVNN-TLPQ 90 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~-~lp~ 90 (120)
.....++...|++++...|..+.. +...+.+-++||+ .++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC
Confidence 345678999999999999988862 2234678899998 4444
No 83
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=29.91 E-value=3.3e+02 Score=24.10 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCCCcceEEEccCCCCCCC-CccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCC
Q 033384 29 YPDRVPVIIEKYSRTDLPD-MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADG 107 (120)
Q Consensus 29 yp~~ipVIvE~~~~~~~p~-L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DG 107 (120)
-.+.|+|-+.+.+.=.+|. -+..-.+|-.-.=++-|..+|+.+........+.||.+..-...|-.-.+=.+.+. .+|
T Consensus 432 ~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~-~~g 510 (600)
T PRK10953 432 EEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYV-KEG 510 (600)
T ss_pred CCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHH-HcC
Confidence 4578888876654345664 34566778888899999999998886655556777777755555555555555553 344
Q ss_pred e---EEEEeccc
Q 033384 108 F---LYMCYSTE 116 (120)
Q Consensus 108 f---Lyl~Ys~~ 116 (120)
. |.+.||.+
T Consensus 511 ~l~~l~~afSRd 522 (600)
T PRK10953 511 LLTRIDLAWSRD 522 (600)
T ss_pred CcceEEEEECCC
Confidence 3 56777744
No 84
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.64 E-value=67 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-.+++|||+--..
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 46799999999999999999999997754
No 85
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=28.85 E-value=1.2e+02 Score=18.95 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCc
Q 033384 47 DMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNT 87 (120)
Q Consensus 47 ~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~ 87 (120)
...+.+..|.++.++.++...--++.+++++ .-.|.-|+.
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~k 44 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNNK 44 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETTE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECCE
Confidence 4567889999999999999999999999987 334444443
No 86
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=28.84 E-value=60 Score=19.98 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=27.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCC---CCCCeEEEEEcCccCCCC
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHL---EPGKALFVFVNNTLPQTA 92 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l---~~~~slfl~Vn~~lp~~~ 92 (120)
.+-+++..|++++...|..+..- .....+-++||+...+.+
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~ 62 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD 62 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC
Confidence 44567789999999998877531 123567788998433333
No 87
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=28.63 E-value=51 Score=23.22 Aligned_cols=31 Identities=3% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCchHhHHHHHhhhcCCCCCCeEEEEEcCc
Q 033384 57 RDMSMGHFIYILSSRLHLEPGKALFVFVNNT 87 (120)
Q Consensus 57 ~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~ 87 (120)
...++.++...|++-+.-.+++.|.|-+++.
T Consensus 67 ~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~ 97 (135)
T smart00148 67 LPIKLSEVLEAIKDFAFVTSPYPVILSLENH 97 (135)
T ss_pred ccEEHHHHHHHHHHHHHhCCCCcEEEeehhh
Confidence 4568999999999999999999999999984
No 88
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.55 E-value=1.2e+02 Score=24.34 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=41.7
Q ss_pred CccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-----ccCCCCchHHHHHhhcc
Q 033384 48 MEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-----TLPQTASRMDSIYKSFK 103 (120)
Q Consensus 48 L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-----~lp~~~~~~~~lY~~~k 103 (120)
|+-.|.=|.++..|.++...+|+. +..+|-+++|| ..|..|.+++++=++++
T Consensus 54 l~~~kLDV~~~~~V~~v~~evr~~----~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~ 110 (289)
T KOG1209|consen 54 LKPYKLDVSKPEEVVTVSGEVRAN----PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFK 110 (289)
T ss_pred CeeEEeccCChHHHHHHHHHHhhC----CCCceEEEEcCCCCCcccccccCCHHHHHhhhc
Confidence 444555599999999999999986 45578888887 36788999999999995
No 89
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=28.54 E-value=53 Score=20.75 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHhhCCCCcceEEEcc
Q 033384 23 KAIVAKYPDRVPVIIEKY 40 (120)
Q Consensus 23 ~~~r~kyp~~ipVIvE~~ 40 (120)
..+.++|..+|||+.-..
T Consensus 40 ~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 40 PELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp HHHHHHSCTSTSEEEETT
T ss_pred HHHHHHhcCCCCEEEEcC
Confidence 347889999999988554
No 90
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=28.48 E-value=64 Score=20.66 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=25.9
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCC-CeEEEE
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPG-KALFVF 83 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~-~slfl~ 83 (120)
.-.+|.++||+++...|-+..+++++ ..|+++
T Consensus 17 ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 17 EKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 34699999999999999999999864 566665
No 91
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=28.08 E-value=48 Score=23.71 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=35.1
Q ss_pred cCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 56 PRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 56 ~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
...+++.+++..|.+.+++..++ + ...++++|-.- ..||- ..+.+++.||
T Consensus 17 ~~~m~f~dL~~ev~~~~~~s~e~---------~---~~~iaq~YtdL-n~DGR--Fi~lG~n~Wg 66 (129)
T PRK02363 17 KEPMSFYDLVNEIQKYLGKSDEE---------I---RERIAQFYTDL-NLDGR--FISLGDNKWG 66 (129)
T ss_pred CCcccHHHHHHHHHHHhCCCHHH---------H---HHHHHHHHHHH-hccCC--eeEcCCCcee
Confidence 35678889999888888765332 1 36889999888 56772 3355777776
No 92
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=27.94 E-value=82 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.544 Sum_probs=17.7
Q ss_pred CCeEEEEEcCcc---CCCCchHHHHHhhc
Q 033384 77 GKALFVFVNNTL---PQTASRMDSIYKSF 102 (120)
Q Consensus 77 ~~slfl~Vn~~l---p~~~~~~~~lY~~~ 102 (120)
.+..|+|||+.. +.....+.+.|..+
T Consensus 47 ~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~ 75 (127)
T cd03483 47 KIIFILFINNRLVECSALRRAIENVYANY 75 (127)
T ss_pred CceEEEEEcCCEecCHHHHHHHHHHHHHh
Confidence 467899999943 34445666777765
No 93
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=27.65 E-value=73 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHhhhcCCCCCCeEEEEEcC
Q 033384 66 YILSSRLHLEPGKALFVFVNN 86 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~ 86 (120)
.-++..|+|.+++.|++.+.+
T Consensus 16 k~i~~~lgl~~Gd~v~v~~~~ 36 (74)
T TIGR02609 16 KEVLESLGLKEGDTLYVDEEE 36 (74)
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 456889999999999998775
No 94
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=27.49 E-value=1.1e+02 Score=19.47 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=39.2
Q ss_pred ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 55 VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
+..+.||+++...|-.+.++++++- =|+.++.....+.++++ |. -+ ++.++++.-..
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~Q-rLi~~Gk~L~D~~tL~~-y~-i~-~~~~i~l~~~~ 75 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQ-RLFYRGKQMEDGHTLFD-YN-VG-LNDIIQLLVRQ 75 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHe-EEEeCCEECCCCCCHHH-cC-CC-CCCEEEEEEec
Confidence 5788999999999999888876432 23346666677788876 32 22 35588776543
No 95
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=27.43 E-value=56 Score=25.81 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccC--CCCchHHHHHhhccCCCCeEE
Q 033384 58 DMSMGHFIYILSSRLHLEPGKALFVFVNN-TLP--QTASRMDSIYKSFKDADGFLY 110 (120)
Q Consensus 58 ~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp--~~~~~~~~lY~~~kd~DGfLy 110 (120)
..++.+++..|++-+.-.+.+.|.|-+++ .-+ .....|.+.+.... +.+||
T Consensus 73 ~~~f~dvl~~i~~fl~~~p~e~vIlsl~~~~~~~~~~q~~~~~~~~~~~--g~~l~ 126 (274)
T cd00137 73 DIFLKEVIEAIAQFLKKNPPETIIMSLKNEVDSMDSFQAKMAEYCRTIF--GDMLL 126 (274)
T ss_pred CcCHHHHHHHHHHHHHHCCCCeEEEEEEecCCCcHHHHHHHHHHHHHhh--hhhhc
Confidence 67899999999999999999999999998 444 55667777777664 33554
No 96
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=27.40 E-value=1.6e+02 Score=21.04 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=35.6
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCC--eEEEEEcC----ccCCCCchHHHHHh
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGK--ALFVFVNN----TLPQTASRMDSIYK 100 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~--slfl~Vn~----~lp~~~~~~~~lY~ 100 (120)
....+.+.+..|+.++...+.++++|...+ +||....+ .-+.++.+|.+.-.
T Consensus 14 ~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 14 TTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 355688999999999999999999996543 44444432 22455666665543
No 97
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=26.42 E-value=1.8e+02 Score=18.44 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCccceEEecCCCchHhHHHHHhhhcCCCC---CCeEEEEE-cC--ccCCCCchHHHHHhhc
Q 033384 46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEP---GKALFVFV-NN--TLPQTASRMDSIYKSF 102 (120)
Q Consensus 46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~---~~slfl~V-n~--~lp~~~~~~~~lY~~~ 102 (120)
|.-.-+-..|+.+.|.++++..+-++.+++. .=+||..+ ++ ...++++..-++-...
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~ 75 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLW 75 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhC
Confidence 4445566789999999999999999999975 34566666 44 3344444444444444
No 98
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=26.20 E-value=91 Score=19.34 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=24.8
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTAS 93 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~ 93 (120)
.+-+++..|++++...| ++++ +.+.+.+|+...+.+.
T Consensus 17 ~~~~~~~~tv~~ll~~l----~~~~-~~v~v~vNg~iv~~~~ 53 (70)
T PRK08364 17 EIEWRKGMKVADILRAV----GFNT-ESAIAKVNGKVALEDD 53 (70)
T ss_pred EEEcCCCCcHHHHHHHc----CCCC-ccEEEEECCEECCCCc
Confidence 34468888999876544 6664 5688899984444443
No 99
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.79 E-value=85 Score=24.72 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCC----------Cccce-EEecCCC---chHhHHHHHhhhcCCCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPD----------MEKTK-YLVPRDM---SMGHFIYILSSRLHLEPGK 78 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~----------L~k~K-flv~~~~---tv~~~~~~lRk~l~l~~~~ 78 (120)
-|.|+|.+-.+...+.-..++|||+--.. +..+ +.=.- .++|.-. +-..+..+.+.=..-. .-
T Consensus 50 Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~~ 126 (289)
T cd00951 50 LTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-DL 126 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-CC
Confidence 57899999999999988899999996542 2110 10011 1222211 2233444333322211 34
Q ss_pred eEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 79 ALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 79 slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
.+++|=+....-+...+.+|-+++ +.+..+.+|+.
T Consensus 127 pi~lYn~~g~~l~~~~l~~L~~~~---pnivgiKds~~ 161 (289)
T cd00951 127 GVIVYNRANAVLTADSLARLAERC---PNLVGFKDGVG 161 (289)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC---CCEEEEEeCCC
Confidence 588884322222344667776434 45777887754
No 100
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=1.2e+02 Score=20.27 Aligned_cols=59 Identities=8% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccC
Q 033384 45 LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 45 ~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd 104 (120)
-|.|..+.+-||+...+.-+..+--...+.++..|--+ -|+ -=..+.++-|++|=+|..
T Consensus 23 dpklpfkv~svpestpftavlkfaaeefkvpaatsaii-tndgiginpaq~agnvflkhgs 82 (94)
T KOG3483|consen 23 DPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAII-TNDGIGINPAQTAGNVFLKHGS 82 (94)
T ss_pred CCCCccceecCCCCCchHHHHHHHHHHccCCccceeEE-ecCccccCccccccceeeccCC
Confidence 46788888889999999888888888888887766544 343 445667778888887754
No 101
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.72 E-value=86 Score=24.17 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||++-.+..++.-..++|||+--..
T Consensus 47 ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 47 LTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 46799999999999988899999997654
No 102
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.16 E-value=89 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+....++|||+--..
T Consensus 50 Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~ 78 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAGRIPFAPGTGA 78 (294)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCc
Confidence 47799999999999999999999986644
No 103
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=24.58 E-value=1.5e+02 Score=17.75 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=25.0
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccC
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLP 89 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp 89 (120)
.+.+-+++..|+.++...+ ++++ +.+-+-+|+ .+|
T Consensus 5 g~~~~~~~~~tv~~ll~~l----~~~~-~~v~v~vN~~iv~ 40 (64)
T TIGR01683 5 GEPVEVEDGLTLAALLESL----GLDP-RRVAVAVNGEIVP 40 (64)
T ss_pred CeEEEcCCCCcHHHHHHHc----CCCC-CeEEEEECCEEcC
Confidence 4556688889998876644 5554 677888998 555
No 104
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=24.54 E-value=74 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.524 Sum_probs=20.3
Q ss_pred CCchHHHHHhhccCCCCeEEEEecccc
Q 033384 91 TASRMDSIYKSFKDADGFLYMCYSTEK 117 (120)
Q Consensus 91 ~~~~~~~lY~~~kd~DGfLyl~Ys~~~ 117 (120)
.=..|.+||++|+ ++||..|.+-..+
T Consensus 38 qy~~L~~L~~ky~-~~gl~ILaFPcnq 63 (108)
T PF00255_consen 38 QYKQLNELYEKYK-DKGLEILAFPCNQ 63 (108)
T ss_dssp HHHHHHHHHHHHG-GGTEEEEEEEBST
T ss_pred ccHHHHHHHHHHh-cCCeEEEeeehHH
Confidence 3358899999998 5789999886543
No 105
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=24.40 E-value=1.9e+02 Score=19.18 Aligned_cols=23 Identities=0% Similarity=0.284 Sum_probs=16.7
Q ss_pred ceEEecCC-CchHhHHHHHhhhcC
Q 033384 51 TKYLVPRD-MSMGHFIYILSSRLH 73 (120)
Q Consensus 51 ~Kflv~~~-~tv~~~~~~lRk~l~ 73 (120)
..+-+|.+ .|+.++...+.+..+
T Consensus 12 R~~~~~~~~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 12 RRIPIHNEDITYDELLLMMQRVFR 35 (81)
T ss_pred EEEeccCccccHHHHHHHHHHHhc
Confidence 34667764 699999999976554
No 106
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=24.15 E-value=93 Score=21.80 Aligned_cols=25 Identities=8% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCchHHHHHhhccCCCCeEEEEecc
Q 033384 91 TASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 91 ~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
....+..+|++|++.+|+.+++-+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~i~~ 44 (155)
T PF14060_consen 20 QGQSLQKYFDKYSENKGVTSVNISK 44 (155)
T ss_pred cchhHHHHHHHhCCCCCeEEEEECH
Confidence 3578899999999999999987653
No 107
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.12 E-value=95 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||++-.+...+.-.+++|||+--..
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~ 79 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGS 79 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 47899999999999998999999997653
No 108
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.59 E-value=2e+02 Score=20.28 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=26.5
Q ss_pred EecCCCchHhHHHHHhhhcCCC------CCCeEEEEEcC
Q 033384 54 LVPRDMSMGHFIYILSSRLHLE------PGKALFVFVNN 86 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~------~~~slfl~Vn~ 86 (120)
-|.+++|..+++..|-++...+ ++=|||....+
T Consensus 41 rVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~n 79 (112)
T cd01782 41 RVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHEN 79 (112)
T ss_pred EEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecC
Confidence 4999999999999999888733 56788877654
No 109
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=23.54 E-value=57 Score=24.10 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.1
Q ss_pred CCCchHHHHHhhccCCCCeEE
Q 033384 90 QTASRMDSIYKSFKDADGFLY 110 (120)
Q Consensus 90 ~~~~~~~~lY~~~kd~DGfLy 110 (120)
+.+..|..++..||+.||-+|
T Consensus 102 s~s~~l~tI~kGfk~~dg~iy 122 (148)
T PF08469_consen 102 SFSSRLVTIHKGFKTKDGRIY 122 (148)
T ss_pred EccchhHHHHhcccCCCCcEe
Confidence 678899999999999999887
No 110
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=23.53 E-value=1.3e+02 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.681 Sum_probs=14.2
Q ss_pred CCCCeEEEEecccccC
Q 033384 104 DADGFLYMCYSTEKTF 119 (120)
Q Consensus 104 d~DGfLyl~Ys~~~~f 119 (120)
|-+|..|+.|....+|
T Consensus 110 Dl~Gi~~~~~~~~~~w 125 (125)
T PF10137_consen 110 DLSGITYIRFDDNRSW 125 (125)
T ss_pred ccCCeEEEEcCCCCCC
Confidence 6799999999998887
No 111
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=23.50 E-value=1.5e+02 Score=21.52 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=21.3
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCC
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGK 78 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~ 78 (120)
-..+.||.+.|+++|-.+|..-++.....
T Consensus 19 wRri~Vp~~~tl~~Lh~~Iq~afgw~~~H 47 (179)
T PF07929_consen 19 WRRIEVPADITLADLHEVIQAAFGWDDDH 47 (179)
T ss_dssp EEEEEEETT-BHHHHHHHHHHHTT----S
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCcCCCE
Confidence 45678999999999999999999987553
No 112
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=1.2e+02 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.469 Sum_probs=26.5
Q ss_pred eEEEEEc--C---ccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 79 ALFVFVN--N---TLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 79 slfl~Vn--~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+|| + ..++.=..|.+||++|+ +.||..+.+-
T Consensus 35 kV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~-~~Gl~ILaFP 74 (171)
T KOG1651|consen 35 KVVLIVNVASQCGLTESQYTELNELYEKYK-DQGLEILAFP 74 (171)
T ss_pred eEEEEEEcccccccchhcchhHHHHHHHHh-hCCeEEEEec
Confidence 4566777 2 45666679999999998 6889988874
No 113
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=23.21 E-value=1.5e+02 Score=18.58 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.9
Q ss_pred CCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEE
Q 033384 45 LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVF 83 (120)
Q Consensus 45 ~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~ 83 (120)
+|+-+...--|.+.+|+.++..-+-++-+|+++. .++|
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~-~~V~ 44 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPEC-CDVR 44 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCC-EEEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHH-EEEE
Confidence 5666777778999999999999999999999764 4454
No 114
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=22.89 E-value=85 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhCCCCcce
Q 033384 16 DERLEESKAIVAKYPDRVPV 35 (120)
Q Consensus 16 e~R~~e~~~~r~kyp~~ipV 35 (120)
.++++..+.|++|+.+.|||
T Consensus 35 q~~q~Wl~sI~ekd~nlvPI 54 (92)
T PF15243_consen 35 QQHQAWLQSIAEKDNNLVPI 54 (92)
T ss_pred HHHHHHHHHHHHhccCcCcc
Confidence 56788899999999999886
No 115
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.53 E-value=1.1e+02 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEcc
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKY 40 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~ 40 (120)
-|.|||++-.+..++.-.+++|||+--.
T Consensus 57 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 57 LTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 4679999999999999999999998654
No 116
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=22.40 E-value=1.1e+02 Score=23.99 Aligned_cols=30 Identities=33% Similarity=0.352 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 12 EHSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 12 ~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
.-|.+||++-.+..++..++++|||+--..
T Consensus 50 ~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 50 TLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 457899999999999999999999986654
No 117
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.13 E-value=1.1e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||..-.+..++.-++++|||+--..
T Consensus 54 Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 54 LSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 46799999999999999999999996643
No 118
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.94 E-value=90 Score=24.31 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC---------CCCCccc-eEEecCC---CchHhHHHHHhhhcCCCCCCe
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD---------LPDMEKT-KYLVPRD---MSMGHFIYILSSRLHLEPGKA 79 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~---------~p~L~k~-Kflv~~~---~tv~~~~~~lRk~l~l~~~~s 79 (120)
-|.+||+.-.+...+.-+.++|||+--...+- +.++.-. -.++|+- .|-.++..+.+.=.. ..+-.
T Consensus 51 Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~-~~~~p 129 (289)
T PF00701_consen 51 LTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD-ATDLP 129 (289)
T ss_dssp S-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH-HSSSE
T ss_pred CCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh-hcCCC
Confidence 57799999999999989999999997654221 0111111 1223332 233444444443331 13456
Q ss_pred EEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 80 LFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 80 lfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
+++|-+- ...-...++.+|.+ + +++-.+.+++-
T Consensus 130 i~iYn~P~~tg~~ls~~~l~~L~~-~---~nv~giK~s~~ 165 (289)
T PF00701_consen 130 IIIYNNPARTGNDLSPETLARLAK-I---PNVVGIKDSSG 165 (289)
T ss_dssp EEEEEBHHHHSSTSHHHHHHHHHT-S---TTEEEEEESSS
T ss_pred EEEEECCCccccCCCHHHHHHHhc-C---CcEEEEEcCch
Confidence 8887763 12223335566655 3 45666776654
No 119
>PF10336 DUF2420: Protein of unknown function (DUF2420); InterPro: IPR018822 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=21.65 E-value=2.5e+02 Score=19.37 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCchHhHHHHHhhhcC------CCCCCeEEEEEcC---c-----cCCCCchHHHH---HhhccCCC---------CeEEE
Q 033384 58 DMSMGHFIYILSSRLH------LEPGKALFVFVNN---T-----LPQTASRMDSI---YKSFKDAD---------GFLYM 111 (120)
Q Consensus 58 ~~tv~~~~~~lRk~l~------l~~~~slfl~Vn~---~-----lp~~~~~~~~l---Y~~~kd~D---------GfLyl 111 (120)
+.++++|+..+|+.+. +..++-|.|-+.. . +-..+-++.+| |+..+..| +-||+
T Consensus 10 ~~~l~~lf~~lR~~le~~~g~~~~~~~ELvl~i~~L~L~i~EDn~y~~~iTl~di~~lf~~L~~n~~~~~~~~~p~~L~i 89 (113)
T PF10336_consen 10 NEPLEELFAALRQFLENEEGELFSAEDELVLDIPELGLEISEDNVYCSDITLSDIVDLFDILCENDGKNEEPDLPEPLYI 89 (113)
T ss_pred hCCHHHHHHHHHHHHHhccccccCCCCEEEEEeccCCcEEeccccccccCcHHHHHHHHHHHHhccCccccCCCCCcEEE
Confidence 3578999999999984 4566677775553 1 22455566655 44443222 38999
Q ss_pred EecccccC
Q 033384 112 CYSTEKTF 119 (120)
Q Consensus 112 ~Ys~~~~f 119 (120)
+-+.++.|
T Consensus 90 ~LstrPRF 97 (113)
T PF10336_consen 90 TLSTRPRF 97 (113)
T ss_pred EEecCccH
Confidence 99988766
No 120
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.64 E-value=92 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=11.8
Q ss_pred ccCCCCeEEEEecccccCC
Q 033384 102 FKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 102 ~kd~DGfLyl~Ys~~~~fG 120 (120)
-+..|||||+ +.++.+|
T Consensus 149 ~~~~~~~l~m--sv~~~~g 165 (244)
T PRK13125 149 SKLSPLFIYY--GLRPATG 165 (244)
T ss_pred HHhCCCEEEE--EeCCCCC
Confidence 3347999999 5566555
No 121
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=21.16 E-value=2.7e+02 Score=23.60 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccC
Q 033384 15 FDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLP 89 (120)
Q Consensus 15 ~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp 89 (120)
|+-..++.+.++++|.-.||+++= .+..|-++...++++.-+++.+ +++|.-+.+|
T Consensus 88 ldl~~~qi~~l~~~~~~~iPl~iM-----------------tS~~T~~~T~~~l~kyfg~~~~--v~~F~Q~~~P 143 (420)
T PF01704_consen 88 LDLIVEQIEALNKKYGVDIPLYIM-----------------TSFNTHEDTRKFLEKYFGLDVD--VFFFKQSKLP 143 (420)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEEEE-----------------EETTTHHHHHHHHHHGCGSSCC--EEEEEE-EEE
T ss_pred HHHHHHHHHHHhccccccceEEEe-----------------cCcccHHHHHHHHHHhcCCCcc--eEEEeecCcc
Confidence 466677778888898888887763 3445677888999987677755 7776666555
No 122
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.14 E-value=1.4e+02 Score=18.48 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=14.1
Q ss_pred chHHHHHhhccCCCCeEEEEec
Q 033384 93 SRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 93 ~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
..|.++|++|++.+++=.|..+
T Consensus 21 ~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 21 PKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEEE
Confidence 3678888888865554444443
No 123
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.00 E-value=69 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.8
Q ss_pred CeEEEEEcC---ccCCCCchHHHHHhhccC
Q 033384 78 KALFVFVNN---TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 78 ~slfl~Vn~---~lp~~~~~~~~lY~~~kd 104 (120)
...|.+||+ ..+++++.+..|++.=+.
T Consensus 45 ~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 45 KKPFALVNGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred CCccEEECCEEEecCCHHHHHHHHHHHHhc
Confidence 578999998 567888889999887654
No 124
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=20.34 E-value=1.3e+02 Score=19.61 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.0
Q ss_pred HHHhhhcCCCCCCeEEEEEcC
Q 033384 66 YILSSRLHLEPGKALFVFVNN 86 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~ 86 (120)
.-+|++|++.+.+.|-+++..
T Consensus 20 keiR~~lgi~~Gd~lei~~~~ 40 (89)
T COG2002 20 KEIREALGIKEGDVLEIIVDG 40 (89)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 568999999999999999985
No 125
>PRK11347 antitoxin ChpS; Provisional
Probab=20.10 E-value=2.5e+02 Score=18.30 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=29.4
Q ss_pred HHHhhhcCCCCCCeEEEEEcC-c---cC-CCCchHHHHHhhcc
Q 033384 66 YILSSRLHLEPGKALFVFVNN-T---LP-QTASRMDSIYKSFK 103 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~-~---lp-~~~~~~~~lY~~~k 103 (120)
..+.+++++..++.+.+-+.+ . .| ...-++.+|...+.
T Consensus 18 k~il~~l~l~~G~~v~i~v~~~~iii~p~~~~~tL~eLla~~~ 60 (83)
T PRK11347 18 NIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCD 60 (83)
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHhcCC
Confidence 456789999999999999886 3 22 34468999999885
Done!