Query 033384
Match_columns 120
No_of_seqs 104 out of 363
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 4.9E-54 1.7E-58 303.1 13.5 115 6-120 4-118 (118)
2 3m95_A Autophagy related prote 100.0 4.3E-54 1.5E-58 305.8 11.7 116 5-120 9-124 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 9.4E-54 3.2E-58 302.0 12.1 115 6-120 5-119 (119)
4 2zjd_A Microtubule-associated 100.0 5.4E-52 1.9E-56 296.8 10.3 118 3-120 6-125 (130)
5 1eo6_A GATE-16, golgi-associat 100.0 5.7E-51 1.9E-55 286.9 11.6 115 6-120 2-116 (117)
6 2r2q_A Gamma-aminobutyric acid 100.0 2.2E-47 7.6E-52 265.9 11.3 110 6-115 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 6.4E-35 2.2E-39 197.2 9.7 85 35-120 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 1.4E-34 4.8E-39 197.3 8.2 85 30-120 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 7.5E-33 2.6E-37 187.1 8.8 85 30-120 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.5 0.027 9.2E-07 44.4 6.2 98 13-114 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.1 0.077 2.6E-06 41.4 7.4 102 13-115 160-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.1 0.028 9.6E-07 43.9 4.9 74 29-112 196-272 (274)
13 3goe_A DNA repair protein RAD6 94.2 0.08 2.7E-06 34.4 4.7 49 49-97 20-68 (82)
14 3a4r_A Nfatc2-interacting prot 86.6 2.1 7.2E-05 26.6 5.8 47 51-98 21-67 (79)
15 2uyz_B Small ubiquitin-related 85.1 1.8 6.2E-05 26.1 4.8 59 52-114 17-75 (79)
16 1oey_A P67-PHOX, neutrophil cy 84.7 2.5 8.4E-05 27.3 5.4 56 54-111 19-78 (83)
17 1we7_A SF3A1 protein; structur 84.0 6.9 0.00024 25.6 8.9 86 25-114 18-107 (115)
18 2k8h_A Small ubiquitin protein 83.6 4.5 0.00015 27.0 6.7 62 30-98 24-85 (110)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 82.8 4.3 0.00015 24.8 6.0 75 30-114 5-79 (87)
20 1wy8_A NP95-like ring finger p 82.6 3.5 0.00012 25.3 5.5 56 55-114 26-81 (89)
21 1wm3_A Ubiquitin-like protein 81.5 1.8 6.3E-05 26.2 3.8 48 50-98 13-60 (72)
22 2io0_B Small ubiquitin-related 81.1 2.5 8.5E-05 27.2 4.5 48 50-98 17-64 (91)
23 3mtn_B UBA80, ubcep1, ubiquiti 79.0 1.9 6.6E-05 26.0 3.3 59 52-114 17-75 (85)
24 2dzi_A Ubiquitin-like protein 78.8 2.7 9.2E-05 25.2 3.9 46 52-98 21-66 (81)
25 2hj8_A Interferon-induced 17 k 78.3 3.8 0.00013 25.4 4.6 60 52-115 18-77 (88)
26 1wyw_B Ubiquitin-like protein 78.0 4.5 0.00015 25.7 4.9 75 30-114 19-93 (97)
27 3a9j_A Ubiquitin; protein comp 77.8 2.6 8.8E-05 24.8 3.5 58 52-114 14-72 (76)
28 3n3k_B Ubiquitin; hydrolase, p 77.4 1.8 6.1E-05 26.2 2.7 59 52-114 17-75 (85)
29 3plu_A Ubiquitin-like modifier 77.3 12 0.00043 24.3 7.1 82 21-113 10-92 (93)
30 1ndd_A NEDD8, protein (ubiquit 76.8 3.1 0.00011 24.4 3.7 58 52-114 14-72 (76)
31 1uh6_A Ubiquitin-like 5; beta- 75.9 7.2 0.00024 25.7 5.5 58 53-114 43-100 (100)
32 2jxx_A Nfatc2-interacting prot 75.5 7.8 0.00027 25.3 5.6 47 51-98 39-85 (97)
33 4dwf_A HLA-B-associated transc 73.8 3.4 0.00012 25.5 3.4 58 52-114 19-76 (90)
34 1yqb_A Ubiquilin 3; structural 73.0 5.5 0.00019 25.6 4.4 74 31-115 21-94 (100)
35 3phx_B Ubiquitin-like protein 72.9 4.2 0.00015 24.4 3.6 58 52-113 18-75 (79)
36 3dbh_I NEDD8; cell cycle, acti 72.5 3 0.0001 25.4 2.9 58 52-113 26-83 (88)
37 1we6_A Splicing factor, putati 72.2 16 0.00056 23.5 6.7 83 24-114 19-103 (111)
38 1wx7_A Ubiquilin 3; ubiquitin- 71.5 11 0.00037 24.2 5.6 59 52-114 30-88 (106)
39 3k9o_B Ubiquitin, UBB+1; E2-25 70.9 4 0.00014 25.4 3.3 59 52-114 15-73 (96)
40 4eew_A Large proline-rich prot 70.9 4.4 0.00015 24.8 3.4 62 29-97 14-75 (88)
41 2l7r_A Ubiquitin-like protein 70.5 9.1 0.00031 24.0 4.9 71 31-113 18-88 (93)
42 2kan_A Uncharacterized protein 70.5 11 0.00036 23.9 5.3 74 30-114 13-87 (94)
43 1yx5_B Ubiquitin; proteasome, 70.4 4.9 0.00017 25.3 3.6 60 52-115 14-73 (98)
44 1ip9_A BEM1 protein; ubiquitin 70.0 6.3 0.00021 25.6 4.0 29 54-83 27-55 (85)
45 1vd2_A Protein kinase C, IOTA 70.0 19 0.00066 23.2 6.5 61 51-111 18-86 (89)
46 2kk8_A Uncharacterized protein 69.7 5.5 0.00019 24.7 3.7 57 53-113 25-82 (84)
47 2lxa_A Ubiquitin-like protein 69.4 16 0.00053 23.1 5.9 43 55-98 20-63 (87)
48 2kvr_A Ubiquitin carboxyl-term 69.3 3.6 0.00012 28.3 3.0 61 51-111 58-128 (130)
49 3v6c_B Ubiquitin; structural g 69.0 4.7 0.00016 25.1 3.3 56 52-112 31-87 (91)
50 2bwf_A Ubiquitin-like protein 69.0 6 0.00021 23.3 3.7 57 52-113 17-74 (77)
51 1wx8_A Riken cDNA 4931431F19; 68.7 8.4 0.00029 24.0 4.5 57 52-113 30-87 (96)
52 4fbj_B NEDD8; effector-HOST ta 68.4 4.7 0.00016 25.1 3.1 59 52-114 14-72 (88)
53 2faz_A Ubiquitin-like containi 67.7 4.8 0.00017 24.0 3.0 56 53-113 18-75 (78)
54 2kd0_A LRR repeats and ubiquit 67.2 5.6 0.00019 24.7 3.3 56 53-113 26-82 (85)
55 3m62_B UV excision repair prot 66.9 8.4 0.00029 24.9 4.3 59 53-115 16-74 (106)
56 2d07_B Ubiquitin-like protein 66.4 5.2 0.00018 25.6 3.1 62 30-98 15-76 (93)
57 3gs2_A E3 ubiquitin-protein li 66.2 27 0.00094 23.5 7.7 83 33-115 4-109 (111)
58 1wz0_A Ubiquitin-like protein 66.2 6.3 0.00022 25.9 3.6 48 50-98 36-83 (104)
59 1x1m_A Ubiquitin-like protein 65.7 23 0.00077 22.7 6.2 54 58-114 44-99 (107)
60 4hcn_B Polyubiquitin, ubiquiti 65.4 6.1 0.00021 25.0 3.3 73 30-113 20-93 (98)
61 2eke_C Ubiquitin-like protein 65.0 5.1 0.00018 26.6 2.9 48 50-98 42-89 (106)
62 3m63_B Ubiquitin domain-contai 64.8 4.5 0.00015 26.1 2.6 60 31-98 27-86 (101)
63 1ttn_A DC-UBP, dendritic cell- 64.8 18 0.00061 23.1 5.6 59 52-115 37-96 (106)
64 1sif_A Ubiquitin; hydrophobic 64.7 6.6 0.00023 24.3 3.3 58 52-114 23-81 (88)
65 4dbg_A Ranbp-type and C3HC4-ty 64.5 13 0.00045 24.6 4.9 61 32-97 24-84 (105)
66 1v5t_A 8430435I17RIK protein; 63.8 17 0.00057 22.6 5.1 60 54-116 23-84 (90)
67 1wju_A NEDD8 ultimate buster-1 62.8 15 0.00051 24.1 4.9 44 53-97 34-77 (100)
68 1wgd_A Homocysteine-responsive 62.8 18 0.0006 22.4 5.1 57 55-113 26-84 (93)
69 2ojr_A Ubiquitin; lanthide-bin 62.7 11 0.00036 24.5 4.2 58 52-114 49-107 (111)
70 2fnj_B Transcription elongatio 59.3 36 0.0012 22.9 6.4 65 52-119 14-85 (118)
71 2klc_A Ubiquilin-1; ubiquitin- 59.2 7.8 0.00027 24.8 3.0 73 30-114 23-96 (101)
72 3vdz_A Ubiquitin-40S ribosomal 59.2 8.3 0.00028 25.1 3.1 58 52-113 49-106 (111)
73 2e5i_A Heterogeneous nuclear r 58.4 11 0.00036 25.4 3.7 41 75-115 21-71 (124)
74 1wf9_A NPL4 family protein; be 56.7 4.7 0.00016 26.2 1.6 61 52-117 20-97 (107)
75 1j8c_A Ubiquitin-like protein 56.7 13 0.00043 24.9 3.8 58 52-114 45-103 (125)
76 1j0g_A Hypothetical protein 18 56.1 38 0.0013 21.9 5.8 58 46-104 21-79 (92)
77 3rt3_B Ubiquitin-like protein 56.0 11 0.00039 25.5 3.6 59 53-114 17-76 (159)
78 3b1l_X E3 ubiquitin-protein li 59.8 2.6 8.8E-05 25.1 0.0 45 53-98 15-59 (76)
79 3kyd_D Small ubiquitin-related 54.1 15 0.00051 24.8 3.8 62 30-98 38-99 (115)
80 4a3p_A Ubiquitin carboxyl-term 54.1 31 0.001 25.1 5.8 60 52-114 143-208 (217)
81 1v5o_A 1700011N24RIK protein; 53.9 11 0.00038 24.0 3.0 57 53-113 26-83 (102)
82 1wxv_A BAG-family molecular ch 53.8 22 0.00075 21.8 4.4 58 53-114 21-84 (92)
83 2diu_A KIAA0430 protein; struc 53.1 11 0.00039 24.7 3.0 43 74-117 5-57 (96)
84 2kdi_A Ubiquitin, vacuolar pro 52.6 9.5 0.00032 25.0 2.6 57 53-114 24-81 (114)
85 1uel_A HHR23B, UV excision rep 52.2 19 0.00066 22.4 4.0 59 52-115 14-76 (95)
86 1wjn_A Tubulin-folding protein 51.6 19 0.00065 22.6 3.9 32 53-84 27-59 (97)
87 3b08_A Polyubiquitin-C, ubiqui 51.5 11 0.00038 25.0 2.8 58 52-114 14-72 (152)
88 2kj6_A Tubulin folding cofacto 51.4 28 0.00097 22.3 4.7 63 31-97 13-81 (97)
89 2wyq_A HHR23A, UV excision rep 51.4 36 0.0012 20.2 7.2 76 30-116 3-82 (85)
90 1yfb_A Transition state regula 51.3 14 0.00048 21.9 2.9 21 66-86 28-48 (59)
91 2io1_B Small ubiquitin-related 50.6 15 0.00052 23.4 3.3 48 50-98 19-66 (94)
92 2kdb_A Homocysteine-responsive 50.3 17 0.0006 23.4 3.6 64 31-100 22-88 (99)
93 2kjr_A CG11242; UBL, ubiquitin 50.0 39 0.0013 21.4 5.2 64 30-97 13-81 (95)
94 2dzm_A FAS-associated factor 1 49.3 20 0.00069 23.3 3.8 58 53-114 23-81 (100)
95 2i1s_A Hypothetical protein; m 48.1 48 0.0016 23.5 6.0 29 50-78 23-51 (188)
96 2kc2_A Talin-1, F1; FERM, adhe 46.8 29 0.001 23.8 4.4 40 45-85 18-57 (128)
97 2l66_A SSO7C4, transcriptional 46.7 20 0.00068 20.4 3.1 21 66-86 18-38 (53)
98 3b08_A Polyubiquitin-C, ubiqui 46.2 23 0.00078 23.3 3.8 58 52-114 90-148 (152)
99 1v86_A DNA segment, CHR 7, way 45.4 11 0.00039 23.7 2.0 44 53-98 31-74 (95)
100 3rt3_B Ubiquitin-like protein 44.8 25 0.00086 23.7 3.9 59 52-114 95-153 (159)
101 3u5e_m 60S ribosomal protein L 42.2 5.3 0.00018 26.7 0.0 45 53-98 15-59 (128)
102 1mvf_D MAZE protein, PEMI-like 41.2 21 0.00071 21.9 2.7 39 66-104 19-64 (82)
103 3l0w_B Monoubiquitinated proli 41.0 36 0.0012 23.8 4.3 58 53-114 15-72 (169)
104 1pqs_A Cell division control p 40.5 17 0.00057 22.8 2.2 23 53-75 6-28 (77)
105 1x5p_A Negative elongation fac 40.2 30 0.001 21.0 3.4 34 82-116 18-59 (97)
106 3u30_A Ubiquitin, linear DI-ub 39.5 28 0.00095 23.9 3.5 59 52-114 34-92 (172)
107 1q1o_A Cell division control p 38.6 12 0.0004 24.8 1.3 25 51-75 25-49 (98)
108 1sjr_A Polypyrimidine tract-bi 38.6 43 0.0015 23.6 4.4 42 75-116 42-94 (164)
109 1v2y_A 3300001G02RIK protein; 37.6 22 0.00076 23.3 2.5 61 54-117 23-98 (105)
110 4a20_A Ubiquitin-like protein 37.3 30 0.001 22.2 3.1 55 55-114 38-95 (98)
111 4b6w_A Tubulin-specific chaper 37.2 30 0.001 21.6 3.0 44 53-96 19-68 (86)
112 3u5c_f 40S ribosomal protein S 36.1 7.6 0.00026 27.2 0.0 45 53-98 15-59 (152)
113 3zzy_A Polypyrimidine tract-bi 36.0 29 0.00099 23.5 3.0 33 72-104 21-54 (130)
114 2bz2_A Negative elongation fac 35.9 30 0.001 22.4 3.0 34 82-116 42-83 (121)
115 2ylm_A Ubiquitin carboxyl-term 35.7 23 0.00077 29.5 2.8 51 50-100 353-410 (530)
116 4ajy_B Transcription elongatio 34.6 43 0.0015 22.6 3.7 62 53-119 15-85 (118)
117 1x4c_A Splicing factor, argini 34.3 46 0.0016 20.6 3.6 24 93-116 30-60 (108)
118 3d2w_A TAR DNA-binding protein 34.3 38 0.0013 20.5 3.2 36 82-117 14-59 (89)
119 3tix_A Ubiquitin-like protein 33.8 23 0.00077 26.5 2.3 60 31-98 56-115 (207)
120 3beg_B Splicing factor, argini 33.2 35 0.0012 21.6 3.0 36 82-117 19-62 (115)
121 3q3f_A Ribonuclease/ubiquitin 33.0 31 0.001 25.0 2.9 57 53-113 120-176 (189)
122 2l32_A Small archaeal modifier 32.6 36 0.0012 20.7 2.8 36 53-93 15-50 (74)
123 3pge_A SUMO-modified prolifera 31.5 38 0.0013 24.9 3.2 60 30-97 27-86 (200)
124 2daf_A FLJ35834 protein; hypot 31.4 1E+02 0.0035 20.8 5.1 45 53-98 31-75 (118)
125 1v6e_A Cytoskeleton-associated 31.3 94 0.0032 19.1 5.5 48 31-83 6-54 (95)
126 2cqh_A IGF-II mRNA-binding pro 30.4 31 0.0011 20.6 2.2 16 55-70 16-31 (93)
127 2ylm_A Ubiquitin carboxyl-term 29.6 44 0.0015 27.7 3.6 60 53-113 151-216 (530)
128 1ryj_A Unknown; beta/alpha pro 28.7 70 0.0024 18.8 3.6 36 53-93 18-53 (70)
129 2pjh_A Protein NPL4, nuclear p 28.6 27 0.00092 21.5 1.7 29 54-82 19-48 (80)
130 1wf0_A TDP-43, TAR DNA-binding 28.6 22 0.00077 21.1 1.3 11 106-116 42-52 (88)
131 2eki_A DRG 1, developmentally- 28.4 1.1E+02 0.0039 19.7 4.8 41 40-84 17-58 (93)
132 4efo_A Serine/threonine-protei 28.4 67 0.0023 20.8 3.7 36 51-86 26-61 (94)
133 3u52_E Phenol hydroxylase comp 28.1 45 0.0015 22.8 2.9 76 26-103 17-101 (119)
134 2div_A TRNA selenocysteine ass 27.0 59 0.002 19.5 3.2 10 107-116 53-62 (99)
135 3fdj_A DEGV family protein; GU 26.2 86 0.0029 23.6 4.5 55 49-116 32-86 (278)
136 2dzj_A Synaptic glycoprotein S 25.2 39 0.0013 21.0 2.0 54 54-111 29-85 (88)
137 1wgg_A Ubiquitin carboxyl-term 25.1 31 0.0011 21.7 1.6 56 53-114 22-78 (96)
138 2e5j_A Methenyltetrahydrofolat 24.6 76 0.0026 19.0 3.3 23 49-71 19-43 (97)
139 2kzr_A Ubiquitin thioesterase 24.6 55 0.0019 19.8 2.6 58 55-115 17-78 (86)
140 2cq4_A RNA binding motif prote 24.6 87 0.003 19.3 3.7 15 55-69 33-47 (114)
141 1wia_A Hypothetical ubiquitin- 24.5 48 0.0016 20.3 2.4 55 52-114 21-77 (95)
142 2al3_A TUG long isoform; TUG U 24.0 68 0.0023 20.7 3.0 41 46-87 17-57 (90)
143 3au4_A Myosin-X; protein-prote 23.6 3E+02 0.01 22.4 8.3 51 50-100 228-283 (555)
144 2i2y_A Fusion protein consists 23.5 90 0.0031 20.4 3.8 36 82-117 76-121 (150)
145 3eb2_A Putative dihydrodipicol 23.4 51 0.0018 25.0 2.7 97 13-117 54-169 (300)
146 2wbr_A GW182, gawky, LD47780P; 23.4 1E+02 0.0035 19.6 3.8 38 79-116 7-53 (89)
147 3cmm_A Ubiquitin-activating en 23.3 71 0.0024 28.8 4.0 49 52-102 921-980 (1015)
148 3s5o_A 4-hydroxy-2-oxoglutarat 23.2 72 0.0024 24.3 3.5 28 13-40 64-91 (307)
149 3po0_A Small archaeal modifier 22.0 52 0.0018 20.0 2.1 40 53-92 22-71 (89)
150 3l21_A DHDPS, dihydrodipicolin 22.0 59 0.002 24.8 2.8 99 13-116 65-179 (304)
151 3rpf_C Molybdopterin convertin 21.8 45 0.0015 19.8 1.7 39 57-95 19-59 (74)
152 2w1t_A Spovt, stage V sporulat 21.8 62 0.0021 23.4 2.7 20 66-85 20-39 (178)
153 1iqt_A AUF1, heterogeneous nuc 21.7 90 0.0031 17.5 3.1 12 106-117 41-52 (75)
154 2yxg_A DHDPS, dihydrodipicolin 21.5 63 0.0021 24.3 2.9 97 13-116 50-165 (289)
155 3h5d_A DHDPS, dihydrodipicolin 21.3 84 0.0029 24.0 3.6 98 13-115 57-171 (311)
156 3a5f_A Dihydrodipicolinate syn 21.2 65 0.0022 24.2 2.9 29 13-41 51-79 (291)
157 3flu_A DHDPS, dihydrodipicolin 21.1 66 0.0022 24.3 2.9 30 12-41 56-85 (297)
158 1vjk_A Molybdopterin convertin 21.1 60 0.0021 20.3 2.3 42 52-93 30-81 (98)
159 3qze_A DHDPS, dihydrodipicolin 21.0 66 0.0022 24.6 2.9 29 13-41 73-101 (314)
160 3e96_A Dihydrodipicolinate syn 21.0 64 0.0022 24.6 2.9 28 13-40 62-89 (316)
161 2ehh_A DHDPS, dihydrodipicolin 20.9 66 0.0022 24.3 2.9 97 13-116 50-165 (294)
162 3cpr_A Dihydrodipicolinate syn 20.8 65 0.0022 24.5 2.8 29 13-41 66-94 (304)
163 3tak_A DHDPS, dihydrodipicolin 20.8 68 0.0023 24.1 2.9 30 12-41 50-79 (291)
164 3na8_A Putative dihydrodipicol 20.7 62 0.0021 24.8 2.7 97 13-116 74-189 (315)
165 3b4u_A Dihydrodipicolinate syn 20.7 88 0.003 23.6 3.6 29 13-41 53-81 (294)
166 2ojp_A DHDPS, dihydrodipicolin 20.6 69 0.0023 24.1 2.9 29 13-41 51-79 (292)
167 3fkr_A L-2-keto-3-deoxyarabona 20.5 68 0.0023 24.5 2.9 29 13-41 58-86 (309)
168 2hvz_A Splicing factor, argini 20.4 84 0.0029 18.9 2.9 16 55-70 8-23 (101)
169 1f6k_A N-acetylneuraminate lya 20.3 68 0.0023 24.1 2.9 29 13-41 54-82 (293)
170 2ytc_A PRE-mRNA-splicing facto 20.2 73 0.0025 18.4 2.5 10 107-116 49-58 (85)
171 1fm0_D Molybdopterin convertin 20.1 62 0.0021 19.1 2.2 36 56-92 23-63 (81)
172 3nyi_A FAT acid-binding protei 20.0 1.5E+02 0.005 22.5 4.7 60 48-116 34-95 (297)
173 2xs2_A Deleted in azoospermia- 20.0 93 0.0032 18.7 3.1 11 107-117 51-61 (102)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=4.9e-54 Score=303.07 Aligned_cols=115 Identities=49% Similarity=0.948 Sum_probs=112.3
Q ss_pred CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++||||||
T Consensus 4 ~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn 83 (118)
T 3rui_B 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVN 83 (118)
T ss_dssp --CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBT
T ss_pred cchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|++|++|++||+||++|||+||||||+||+++|||
T Consensus 84 ~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 84 DTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 99999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=4.3e-54 Score=305.85 Aligned_cols=116 Identities=47% Similarity=0.885 Sum_probs=113.4
Q ss_pred CCCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEE
Q 033384 5 KVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFV 84 (120)
Q Consensus 5 ~~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~V 84 (120)
.+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 85 NNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 85 n~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG 124 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence 999999999999999999999999999999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=9.4e-54 Score=301.99 Aligned_cols=115 Identities=40% Similarity=0.813 Sum_probs=111.3
Q ss_pred CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+.+||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++||||||
T Consensus 5 ~~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn 84 (119)
T 3h9d_A 5 DSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTN 84 (119)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEET
T ss_pred ccchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|.+|++|++||+||++|||+||||||+||+++|||
T Consensus 85 ~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 85 DTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp TEECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred CcCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 99999999999999999999999999999999999
No 4
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=5.4e-52 Score=296.82 Aligned_cols=118 Identities=38% Similarity=0.765 Sum_probs=114.0
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCC-CCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEE
Q 033384 3 MGKVKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTD-LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALF 81 (120)
Q Consensus 3 m~~~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~-~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slf 81 (120)
|+++.+||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||+++||+||+.+||+||+|+++++||
T Consensus 6 ~~~m~~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alF 85 (130)
T 2zjd_A 6 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFF 85 (130)
T ss_dssp -CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEE
T ss_pred ccchhHHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEE
Confidence 444459999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred E-EEcCccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 82 V-FVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 82 l-~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
| ||||.+|++|++||+||++|||+||||||+||+++|||
T Consensus 86 l~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG 125 (130)
T 2zjd_A 86 LLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125 (130)
T ss_dssp EEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred EEEECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccC
Confidence 9 99999999999999999999999999999999999998
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=5.7e-51 Score=286.88 Aligned_cols=115 Identities=49% Similarity=0.870 Sum_probs=112.9
Q ss_pred CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus 2 ~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn 81 (117)
T 1eo6_A 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD 81 (117)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred CcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEEC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecccccCC
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYSTEKTFG 120 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~~fG 120 (120)
|.+|++|++||+||++|||+||||||+||+++|||
T Consensus 82 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG 116 (117)
T 1eo6_A 82 KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116 (117)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred CEecCccchHHHHHHHhCCCCCEEEEEEeCCccCC
Confidence 99999999999999999999999999999999999
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=2.2e-47 Score=265.91 Aligned_cols=110 Identities=45% Similarity=0.884 Sum_probs=107.4
Q ss_pred CCCccccCCHHHHHHHHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 6 VKSFKTEHSFDERLEESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 6 ~~~fk~~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 86 NTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 86 ~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
|.+|++|++||+||++|||+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=6.4e-35 Score=197.24 Aligned_cols=85 Identities=26% Similarity=0.472 Sum_probs=80.4
Q ss_pred eEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 35 VIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 35 VIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
|+|.-.+.+++|.|+++||+||+++||++|+.+||+||+|+++++||||||| ++|++|++||+||++|| +||||||+|
T Consensus 6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY 84 (91)
T ss_dssp EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence 5555555589999999999999999999999999999999999999999999 89999999999999999 999999999
Q ss_pred cccccCC
Q 033384 114 STEKTFG 120 (120)
Q Consensus 114 s~~~~fG 120 (120)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 4gdk_A 85 CKSQAWG 91 (91)
T ss_dssp ESSCCCC
T ss_pred eCccccC
Confidence 9999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=1.4e-34 Score=197.27 Aligned_cols=85 Identities=25% Similarity=0.452 Sum_probs=80.8
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCe
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGF 108 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGf 108 (120)
|+||+|++++. +++|.|+++||+||+++||++|+.+||+||+++ +||||||| ++|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999887 679999999999999999999999999999998 99999999 999999999999999998 999
Q ss_pred EEEEecccccCC
Q 033384 109 LYMCYSTEKTFG 120 (120)
Q Consensus 109 Lyl~Ys~~~~fG 120 (120)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.98 E-value=7.5e-33 Score=187.11 Aligned_cols=85 Identities=16% Similarity=0.396 Sum_probs=67.4
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCe
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGF 108 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGf 108 (120)
|+||-|-. .+-+++|.|+++||+||+++||++|+.+||+||++ ++||||||| ++|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 34544444 33489999999999999999999999999999999 699999999 89999999999999999 7999
Q ss_pred EEEEecccccCC
Q 033384 109 LYMCYSTEKTFG 120 (120)
Q Consensus 109 Lyl~Ys~~~~fG 120 (120)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.52 E-value=0.027 Score=44.44 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCC-CCCCCccceEEecC---CCchHhHHHHHhhhcC-CCCCCeEEEEEcCc
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRT-DLPDMEKTKYLVPR---DMSMGHFIYILSSRLH-LEPGKALFVFVNNT 87 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflv~~---~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~ 87 (120)
+.|++=..-..++...-+.+|||.|--.... ..+.++ =.++. ..|++++..- +..+. +-+..+..+.+.+-
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4455444455566655678999999765432 111111 01111 2277765410 22221 22344468889997
Q ss_pred cCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 88 LPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 88 lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.|+.++.+.+||+.++..||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 777999999999999999999999865
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.07 E-value=0.077 Score=41.41 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhhCC-----CCcceEEEccCCCCCCCCccceEEe---cCCCchHhHHHHHh-hhcCCC-CCCeEEE
Q 033384 13 HSFDERLEESKAIVAKYP-----DRVPVIIEKYSRTDLPDMEKTKYLV---PRDMSMGHFIYILS-SRLHLE-PGKALFV 82 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp-----~~ipVIvE~~~~~~~p~L~k~Kflv---~~~~tv~~~~~~lR-k~l~l~-~~~slfl 82 (120)
+.|++=..-..++....+ .+|||.|-... ++-|.++..-=-+ ....|++++...+= ....-+ ......+
T Consensus 160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~v 238 (275)
T 4gdk_B 160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQV 238 (275)
T ss_dssp TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEE
T ss_pred CCHHHHHHHHHhhcCCCCccCccccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceE
Confidence 344433333444444433 67999997532 1212222110000 12357777755431 111101 1234567
Q ss_pred EEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 83 FVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 83 ~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
++.+-.++.++.|.+||+++...||||||.-.-
T Consensus 239 iihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 239 MIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP 271 (275)
T ss_dssp EBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred EEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence 788877899999999999999999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=95.06 E-value=0.028 Score=43.85 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCCcceEEEccCCCCCCCCccceEEec---CCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCC
Q 033384 29 YPDRVPVIIEKYSRTDLPDMEKTKYLVP---RDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDA 105 (120)
Q Consensus 29 yp~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~ 105 (120)
-...|||.|-... + |.++. +|+ ...|++++... .+. .......+++.+-.++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~~---~lp-~l~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLDS---IKL-SSDGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHHT---TTC-CC--CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHHH---hcc-ccccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 4578999997633 2 12211 233 36677776543 332 1112345778887779999999999999999
Q ss_pred CCeEEEE
Q 033384 106 DGFLYMC 112 (120)
Q Consensus 106 DGfLyl~ 112 (120)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.18 E-value=0.08 Score=34.41 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=41.3
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
+.-+|.|+.+.+|.+++..-|++-+++++.+|.|...+--..+++++.+
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence 3458999999999999999999999999999999999855555666544
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=86.59 E-value=2.1 Score=26.57 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=39.0
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
-.|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999988656665 56556778888887
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=85.11 E-value=1.8 Score=26.11 Aligned_cols=59 Identities=7% Similarity=0.078 Sum_probs=42.3
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|..+.||+++...+..+.++++++--++| ++.....+.+++++- -+ ++..|++...
T Consensus 17 ~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~~ 75 (79)
T 2uyz_B 17 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE 75 (79)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence 46799999999999999999999887554444 665556778888751 11 2336666543
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.66 E-value=2.5 Score=27.26 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=43.0
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEEEc---C-ccCCCCchHHHHHhhccCCCCeEEE
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVFVN---N-TLPQTASRMDSIYKSFKDADGFLYM 111 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~-~lp~~~~~~~~lY~~~kd~DGfLyl 111 (120)
-||.+.+++++...|++||+++++....-|=. + ..+..++.|.+.++.=+ +|-|-+
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL 78 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL 78 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence 49999999999999999999986655555544 2 45788899999998865 444444
No 17
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=84.02 E-value=6.9 Score=25.60 Aligned_cols=86 Identities=6% Similarity=0.132 Sum_probs=55.5
Q ss_pred HHhhCCCCcceEEEccCCCCCC--CCccce--EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHh
Q 033384 25 IVAKYPDRVPVIIEKYSRTDLP--DMEKTK--YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYK 100 (120)
Q Consensus 25 ~r~kyp~~ipVIvE~~~~~~~p--~L~k~K--flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~ 100 (120)
..+.+|..|-|.|.......-| .|..+. +-|+.+.||+++...|....+++++.-- |+.++.....+.+|++. .
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-~ 95 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-N 95 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH-T
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC-C
Confidence 6677899899988653211001 133333 4599999999999999999999876543 33466555677788764 1
Q ss_pred hccCCCCeEEEEec
Q 033384 101 SFKDADGFLYMCYS 114 (120)
Q Consensus 101 ~~kd~DGfLyl~Ys 114 (120)
-+ ++..|+|...
T Consensus 96 -i~-~g~~i~lv~r 107 (115)
T 1we7_A 96 -MA-SGAVIHLALK 107 (115)
T ss_dssp -CC-SSCEEEEEEC
T ss_pred -CC-CCCEEEEEEE
Confidence 11 3446777654
No 18
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=83.64 E-value=4.5 Score=27.01 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+++|-|.|.-.. + ..-.|.|..+.+++.++....++.++++.+--|+| ++.....+.|.+++
T Consensus 24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 355666664322 1 23468899999999999999999999988666666 55445677899888
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.84 E-value=4.3 Score=24.76 Aligned_cols=75 Identities=7% Similarity=0.015 Sum_probs=48.8
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeE
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFL 109 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfL 109 (120)
|..+-|.|.... + +...+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++.= -+ ++..|
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~~--i~-~g~~i 74 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIYG--IQ-DSDTL 74 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHHT--CC-TTEEE
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHCC--CC-CCCEE
Confidence 345666665422 1 1223568999999999999999999987654 3445666566777887751 11 34467
Q ss_pred EEEec
Q 033384 110 YMCYS 114 (120)
Q Consensus 110 yl~Ys 114 (120)
++...
T Consensus 75 ~l~~~ 79 (87)
T 1wh3_A 75 ILSKK 79 (87)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77654
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.64 E-value=3.5 Score=25.32 Aligned_cols=56 Identities=7% Similarity=0.097 Sum_probs=40.5
Q ss_pred ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 55 VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|++...
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~--~i~-~g~~i~l~~~ 81 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY--DVG-LNDIIQLLVR 81 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH--TCC-TTCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC--CCC-CCCEEEEEEe
Confidence 89999999999999999999876543 44466656677788775 112 3447777654
No 21
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=81.55 E-value=1.8 Score=26.24 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=37.0
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.-.|.|.++.+++.++....++.++++++--|+| ++....++.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CCEEcCCCCCHHHc
Confidence 3468899999999999999999999987766766 44334555666554
No 22
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=81.14 E-value=2.5 Score=27.19 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=37.4
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.-.|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3468899999999999999999999987666666 55444566676665
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=79.03 E-value=1.9 Score=26.04 Aligned_cols=59 Identities=5% Similarity=0.089 Sum_probs=41.7
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .-+ ++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i~-~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIQ-KWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TCC-TTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CCC-CCCEEEEEEE
Confidence 4569999999999999999999987543 344577666677787763 112 3447777643
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.83 E-value=2.7 Score=25.17 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=34.2
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++.
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~~ 66 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSDY 66 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHHc
Confidence 35689999999999999999999876433 34466555667777653
No 25
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=78.30 E-value=3.8 Score=25.43 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=42.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 3458999999999999999999987654444 4555556778888752 22 34478877653
No 26
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=78.01 E-value=4.5 Score=25.72 Aligned_cols=75 Identities=5% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeE
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFL 109 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfL 109 (120)
++.+-|.|.-.. + +...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..|
T Consensus 19 ~~~m~I~Vk~~~-g-----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I 88 (97)
T 1wyw_B 19 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVI 88 (97)
T ss_dssp CCEEEEEEECTT-C-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEE
T ss_pred CCcEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEE
Confidence 456677774322 2 22346699999999999999999999887554444 565556778888752 22 23377
Q ss_pred EEEec
Q 033384 110 YMCYS 114 (120)
Q Consensus 110 yl~Ys 114 (120)
++...
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77654
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=77.79 E-value=2.6 Score=24.76 Aligned_cols=58 Identities=5% Similarity=0.056 Sum_probs=40.7
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998754 4455566555567777653 22 3446776653
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=77.35 E-value=1.8 Score=26.25 Aligned_cols=59 Identities=7% Similarity=0.112 Sum_probs=41.8
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .-+ ++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~~--~i~-~~~~i~l~~r 75 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIH-NHSALYLLLK 75 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTTT--TCC-TTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHHC--CCC-CCCEEEEEEe
Confidence 345899999999999999999998765 4444576666677777763 122 3447777653
No 29
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=77.31 E-value=12 Score=24.32 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=51.4
Q ss_pred HHHHHHhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHh
Q 033384 21 ESKAIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYK 100 (120)
Q Consensus 21 e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~ 100 (120)
-+..+....|.+|-|.|.-.. + ++..+-|.++.||++|...|-.+.++++++-.-.| ++.....+.+|+
T Consensus 10 ~~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~---- 78 (93)
T 3plu_A 10 HSSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE---- 78 (93)
T ss_dssp ----------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----
T ss_pred ccccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----
Confidence 345566677888889886432 2 33456799999999999999999999987655555 566677777775
Q ss_pred hccCCCC-eEEEEe
Q 033384 101 SFKDADG-FLYMCY 113 (120)
Q Consensus 101 ~~kd~DG-fLyl~Y 113 (120)
.|.=.|| -|.+-|
T Consensus 79 dY~I~dgstLhL~~ 92 (93)
T 3plu_A 79 DYEVHDQTNLELYY 92 (93)
T ss_dssp GGTCCTTCEEEEEE
T ss_pred HcCCCCCCEEEEEe
Confidence 3443333 666665
No 30
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=76.78 E-value=3.1 Score=24.37 Aligned_cols=58 Identities=5% Similarity=0.011 Sum_probs=41.1
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998754 4455577555667777653 22 3446776653
No 31
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.85 E-value=7.2 Score=25.68 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=42.6
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|..+.||+++...|..+-++++++- -|..++.....+.+|++ |.-. ++..|.|.|.
T Consensus 43 lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 558999999999999999999986653 33345665677888887 4322 3447888883
No 32
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=75.54 E-value=7.8 Score=25.33 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=38.8
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
-.|.|..+.+++.++..-.++.+++.+.--|+| ++....+++|..+|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999987655555 66556778888887
No 33
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=73.84 E-value=3.4 Score=25.50 Aligned_cols=58 Identities=9% Similarity=0.196 Sum_probs=41.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|..+.||+++...|..+.++++++-- |+.++.....+.+|++. .-++..|++...
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~d~~tL~~~----~i~g~~i~l~~~ 76 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQEY----NVGGKVIHLVER 76 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCTTEEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCeECCCCCCHHHc----CCCCcEEEEEec
Confidence 35689999999999999999999876543 34466666778888863 222446666654
No 34
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=73.00 E-value=5.5 Score=25.59 Aligned_cols=74 Identities=9% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEE
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLY 110 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLy 110 (120)
+.+-|.|.... + +..+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .-+ ++..|+
T Consensus 21 ~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~y--gI~-~gstI~ 89 (100)
T 1yqb_A 21 HLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTVH 89 (100)
T ss_dssp TEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHH--TCC-TTCEEE
T ss_pred CeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHC--CCC-CCCEEE
Confidence 45666664422 1 22456999999999999999999998654 4444567666777888875 122 344677
Q ss_pred EEecc
Q 033384 111 MCYST 115 (120)
Q Consensus 111 l~Ys~ 115 (120)
+....
T Consensus 90 l~~r~ 94 (100)
T 1yqb_A 90 LVIKR 94 (100)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 76543
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=72.94 E-value=4.2 Score=24.35 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=41.3
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- -+ ++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~--i~-~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--LK-PLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--CC-TTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC--CC-CCCEEEEEE
Confidence 3569999999999999999999987653 4455766666777887631 11 344777654
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=72.47 E-value=3 Score=25.44 Aligned_cols=58 Identities=3% Similarity=0.010 Sum_probs=41.0
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 4569999999999999999999986543 334476666678888774 222 344777654
No 37
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=72.23 E-value=16 Score=23.51 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=52.5
Q ss_pred HHHhhCCCCcceEEEccCCCCCCCCccceEEecC-CCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhc
Q 033384 24 AIVAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPR-DMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSF 102 (120)
Q Consensus 24 ~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~-~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~ 102 (120)
....++|.-|.|.|.-.. .+.-+.-.+-|+. +.||+++...|....+++++.--. +.++.+...+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~---~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL-~~~Gk~L~D~~tL~~y---- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPN---ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKL-SGKAGFLKDNMSLAHY---- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTT---CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEE-ECSSSBCCTTSBTTTT----
T ss_pred HHHHhCCCcEEEEEEecc---cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEE-EECCEECCCCCcHHHC----
Confidence 345678888888885421 0011222456898 999999999999999998654333 3366555666677643
Q ss_pred cC-CCCeEEEEec
Q 033384 103 KD-ADGFLYMCYS 114 (120)
Q Consensus 103 kd-~DGfLyl~Ys 114 (120)
.- ++..|+|...
T Consensus 91 ~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 NVGAGEILTLSLR 103 (111)
T ss_dssp TCSSSCEEEEECS
T ss_pred CCCCCCEEEEEEE
Confidence 22 3446776643
No 38
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.47 E-value=11 Score=24.17 Aligned_cols=59 Identities=8% Similarity=0.200 Sum_probs=42.0
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||++|...|..+.+++++. .-|+.++.....+.+|+++ .-+ ++..|+|...
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~--gi~-~g~~i~l~~~ 88 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTVHLVIK 88 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH--TCC-TTEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc--CCC-CCCEEEEEEc
Confidence 456899999999999999999998654 4445577666777788765 122 2336777654
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=70.94 E-value=4 Score=25.41 Aligned_cols=59 Identities=5% Similarity=0.093 Sum_probs=42.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|+++ .-+ ++..|++...
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r 73 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 73 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CCC-CCCEEEEEEE
Confidence 356899999999999999999998754 4455577666777788764 122 3447777654
No 40
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=70.89 E-value=4.4 Score=24.85 Aligned_cols=62 Identities=13% Similarity=0.326 Sum_probs=42.6
Q ss_pred CCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 29 YPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 29 yp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
-|..+.|.|.... + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-S-----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-S-----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCC-C-----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCcHHH
Confidence 3556666664422 2 1223568999999999999999999987654 34446666677778876
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=70.55 E-value=9.1 Score=24.02 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=46.3
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEE
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLY 110 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLy 110 (120)
..+-|.|.. + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.= -+ ++..|+
T Consensus 18 ~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y~--I~-~gstI~ 85 (93)
T 2l7r_A 18 GSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQCG--VE-ALTTLE 85 (93)
T ss_dssp --CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHHT--CC-SSCEEE
T ss_pred CcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHCC--CC-CCCEEE
Confidence 456677754 1 2234568999999999999999999986543 3445665566777887751 11 344676
Q ss_pred EEe
Q 033384 111 MCY 113 (120)
Q Consensus 111 l~Y 113 (120)
+..
T Consensus 86 lv~ 88 (93)
T 2l7r_A 86 VAG 88 (93)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 42
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=70.50 E-value=11 Score=23.90 Aligned_cols=74 Identities=5% Similarity=-0.028 Sum_probs=47.6
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCC-chHHHHHhhccCCCCe
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTA-SRMDSIYKSFKDADGF 108 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~-~~~~~lY~~~kd~DGf 108 (120)
+..+.|.|.-.. + ...+-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++.= -+ ++..
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~yg--I~-~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEYG--IT-EFSE 81 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHHT--CC-TTEE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHCC--CC-CCCE
Confidence 455666664421 1 223459999999999999999999987643 344566555566 7887641 11 3446
Q ss_pred EEEEec
Q 033384 109 LYMCYS 114 (120)
Q Consensus 109 Lyl~Ys 114 (120)
|+|...
T Consensus 82 l~lv~r 87 (94)
T 2kan_A 82 IVVFLK 87 (94)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777654
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=70.43 E-value=4.9 Score=25.32 Aligned_cols=60 Identities=5% Similarity=0.084 Sum_probs=41.7
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .-+ ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~~--gi~-~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHHc--CCC-CCCEEEEEEeC
Confidence 456889999999999999999998764 4444566555667777654 111 34577776543
No 44
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=69.96 E-value=6.3 Score=25.56 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=23.4
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEE
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVF 83 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~ 83 (120)
.||.+.+++++..-|+.||+++ +.-+|.|
T Consensus 27 rvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 27 MLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 6999999999999999999995 3334443
No 45
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=69.96 E-value=19 Score=23.18 Aligned_cols=61 Identities=7% Similarity=0.146 Sum_probs=44.5
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEE-EEcC----ccCCCCchHH---HHHhhccCCCCeEEE
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFV-FVNN----TLPQTASRMD---SIYKSFKDADGFLYM 111 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~----~lp~~~~~~~---~lY~~~kd~DGfLyl 111 (120)
..+.||.+.++.++..-||.+.++.+.+.+-+ |++. ...+.|..|. ++|+-++|+.=.|||
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 45679999999999999999999987777766 4442 3447777665 466677654444554
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.68 E-value=5.5 Score=24.74 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=39.8
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCcc-CCCCchHHHHHhhccCCCCeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTL-PQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~l-p~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
+-|+.+.||+++...|..+.++++++ .-|+.++.. ...+.+|++.= -+ ++..|++..
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv~ 82 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQCQ--IV-PTSDIQLEV 82 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHHT--CC-TTSCEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHcC--CC-CCCEEEEEE
Confidence 45899999999999999999998654 334456655 67778887741 11 334566643
No 47
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=69.36 E-value=16 Score=23.05 Aligned_cols=43 Identities=5% Similarity=0.001 Sum_probs=32.3
Q ss_pred ecCCCchHhHHHHH-hhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 55 VPRDMSMGHFIYIL-SSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 55 v~~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
++.+.||+++...| ..+-++++++--.+ .++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHHc
Confidence 34899999999999 77778887654333 466667788888864
No 48
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.34 E-value=3.6 Score=28.28 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=42.9
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCC-CCeEEEEEc--Cc-----cCCCCchHHHHHhhccC--CCCeEEE
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEP-GKALFVFVN--NT-----LPQTASRMDSIYKSFKD--ADGFLYM 111 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~-~~slfl~Vn--~~-----lp~~~~~~~~lY~~~kd--~DGfLyl 111 (120)
.-|.|.+++|+++|...|-+.+++++ ...++..++ |. ++.++.+|++.+....+ .+=.|||
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~~~~~~~l~l 128 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFL 128 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHTSCSSEEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhcCCCCcEEEE
Confidence 35889999999999999999999875 477888877 32 33455666666655433 3334444
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=69.01 E-value=4.7 Score=25.05 Aligned_cols=56 Identities=5% Similarity=0.069 Sum_probs=39.6
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEE
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMC 112 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~ 112 (120)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 3559999999999999999999987543 334466666777787763 22 33466654
No 50
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=68.97 E-value=6 Score=23.27 Aligned_cols=57 Identities=5% Similarity=0.012 Sum_probs=40.1
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Y 113 (120)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.++++. .- ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 456899999999999999999998654 3444566555667777653 22 344677654
No 51
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.70 E-value=8.4 Score=24.03 Aligned_cols=57 Identities=11% Similarity=0.243 Sum_probs=39.6
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCC-eEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADG-FLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DG-fLyl~Y 113 (120)
.+-|+.+.||+++...|..+.+++++.--.+ .++.....+.+|++. .-.|| .|++..
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~i~l~~ 87 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGSTVHVVV 87 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEEEECCB
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCEEEEEE
Confidence 4568999999999999999999987543333 456555677788874 23333 565543
No 52
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=68.36 E-value=4.7 Score=25.06 Aligned_cols=59 Identities=3% Similarity=0.022 Sum_probs=41.3
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .-+ ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~--~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KIL-GGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTTT--TCC-TTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHHc--CCC-CCCEEEEEEE
Confidence 34588999999999999999999875433 33466666777788764 122 3447777654
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=67.73 E-value=4.8 Score=23.96 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=38.8
Q ss_pred EE-ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEe
Q 033384 53 YL-VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCY 113 (120)
Q Consensus 53 fl-v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Y 113 (120)
+- |+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 44 8899999999999999999987643 344466555666677653 22 344676654
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.16 E-value=5.6 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=38.1
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Y 113 (120)
+-|+.+.||+++...|....+++++.- -|+.++.....+.+|+++ .- ++..|++..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 458999999999999999999986543 333466555666677653 22 233666654
No 55
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.87 E-value=8.4 Score=24.89 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=41.6
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|+++ .-+ ++..|++..+.
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~ 74 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQ 74 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEECCTTSBTTTT--TCC-TTCEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEECCCcCCHHHc--CCC-CCCEEEEEEcC
Confidence 448899999999999999999986543 334466666777788774 222 34477776543
No 56
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=66.38 E-value=5.2 Score=25.56 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=42.8
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+++|-|.|.-.. + ..-.|.|.++.+++.++....++.+++++.--|+| ++.....+.|.+++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEEcCCCCCHHHc
Confidence 456666664321 1 23468899999999999999999999987555554 55444556666655
No 57
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=66.20 E-value=27 Score=23.55 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=58.1
Q ss_pred cceEEEccCCCCCC-CCccceEE-ecCCCchHhHHHHHhhhcCCCC------------------CCeEEEEEc-C--ccC
Q 033384 33 VPVIIEKYSRTDLP-DMEKTKYL-VPRDMSMGHFIYILSSRLHLEP------------------GKALFVFVN-N--TLP 89 (120)
Q Consensus 33 ipVIvE~~~~~~~p-~L~k~Kfl-v~~~~tv~~~~~~lRk~l~l~~------------------~~slfl~Vn-~--~lp 89 (120)
|-++..++|..-.. .....+|+ -+.+.||.++...|.-||.|+. +-.||+.-+ + .+.
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 45667776633211 12455776 7899999999999998887651 234455433 2 366
Q ss_pred CCCchHHHHHhhccCCCCeEEEEecc
Q 033384 90 QTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 90 ~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
+.++++.++-++|=-.+-=|-|-||-
T Consensus 84 ~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 84 DGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred cCcccHHHHhhhhccCCCCeeEEecc
Confidence 99999999999995567888888874
No 58
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.19 E-value=6.3 Score=25.91 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=37.0
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.-.|.|..+.++..++....++.++++..--|+|=+.. ...+.|.+++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~-l~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP-INETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB-CCTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE-cCCCCCHHHc
Confidence 34688999999999999999999999876666664444 4555666655
No 59
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.72 E-value=23 Score=22.74 Aligned_cols=54 Identities=6% Similarity=0.091 Sum_probs=36.0
Q ss_pred CCchHhHHHHHhhhc--CCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 58 DMSMGHFIYILSSRL--HLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 58 ~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+.||+++...|..+. ++++++..=|+.++.....+.+|++. .-+ ++-.|+|.-.
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y--~i~-~g~~i~lv~~ 99 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY--GIQ-PGSTVHVLRK 99 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH--TCC-TTCEEEEEES
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc--CCC-CCCEEEEEeC
Confidence 599999999999999 88876612334456555677788765 122 2336666544
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=65.44 E-value=6.1 Score=25.03 Aligned_cols=73 Identities=4% Similarity=0.099 Sum_probs=46.4
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCe
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGF 108 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGf 108 (120)
+..+-|.|.... + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|+++ .- ++..
T Consensus 20 ~~~m~I~Vk~~~-g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLT-G-----KTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETT-C-----CEEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 345666665432 2 1234568999999999999999999987543 344566666777777763 22 3346
Q ss_pred EEEEe
Q 033384 109 LYMCY 113 (120)
Q Consensus 109 Lyl~Y 113 (120)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66653
No 61
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=65.04 E-value=5.1 Score=26.58 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=37.1
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
...|.|..+.++..++....++.++++++--|+| ++.....+.|.++|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 3468899999999999999999999987666666 55444556676665
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.79 E-value=4.5 Score=26.10 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=39.9
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
-.|-|.|.. . ++. -.+-|+.+.||+++...|..+.+++++.--. +.++.....+.+|++.
T Consensus 27 m~i~I~Vk~-~-g~~-----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 27 MSLNIHIKS-G-QDK-----WEVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKILKDDQTVESY 86 (101)
T ss_dssp --CCEEEEC-S-SCC-----CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCE-EETTEECCTTSBTTTT
T ss_pred cEEEEEEEE-C-CEE-----EEEEeCCCCCHHHHHHHHHHHHCcChHHEEE-EECCEECCCcCcHHHC
Confidence 456677764 2 221 1235889999999999999999998654333 3366666777777764
No 63
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.78 E-value=18 Score=23.14 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEecc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYST 115 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys~ 115 (120)
.+-|+.+.||+++...|..+.+++++.--.+ .++.....+.+|++. .- ++..|+|....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 3569999999999999999999986644333 466555667777664 22 34477776643
No 64
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=64.67 E-value=6.6 Score=24.33 Aligned_cols=58 Identities=3% Similarity=0.060 Sum_probs=39.0
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 3458999999999999999999986543 344466555667777653 22 3346666543
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=64.51 E-value=13 Score=24.63 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=41.8
Q ss_pred CcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 32 RVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 32 ~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
++-|.||-...+. ..-.+-|.++.||+++...|-.+.+++++.-= ++.++.+...+.+|++
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 3445555543211 23345689999999999999999999975444 4446677777888865
No 66
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=63.84 E-value=17 Score=22.60 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=40.0
Q ss_pred EecCCCchHhHHHHHhhhcCCCCCCeEEEE--EcCccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPGKALFVF--VNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~~slfl~--Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
-|+.+.||++|...|..+.+++++.--.+. .++.....+.+++++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468999999999999999999865433330 456555667788874 122 334676655443
No 67
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.79 E-value=15 Score=24.08 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=35.2
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
.-|+.+.||+++...|-.+.++++.+-- |..++.....+.+|++
T Consensus 34 lev~~~~TV~~lK~kI~~k~gip~~qQr-LI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 34 LETRLHITGRELRSKIAETFGLQENYIK-IVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEESSSBHHHHHHHHHHHTTCCSTTCE-EEETTEECCTTSBHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHCcCHHHeE-EEeCCeECCCCCcHHH
Confidence 4489999999999999999999876543 3456766788889877
No 68
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.78 E-value=18 Score=22.43 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=38.6
Q ss_pred ecCCCchHhHHHHHhhhc--CCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 55 VPRDMSMGHFIYILSSRL--HLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
|+.+.||+++...|..+. ++++++-- |+.++.....+.+|++....-+ ++..|+|..
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~ 84 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVC 84 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CSEEEEEEC
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CCCEEEEEe
Confidence 559999999999999988 88765433 3346666677788887642222 344666654
No 69
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=62.68 E-value=11 Score=24.50 Aligned_cols=58 Identities=5% Similarity=0.065 Sum_probs=40.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4558999999999999999999987654 344566555667777654 22 3446776543
No 70
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=59.26 E-value=36 Score=22.94 Aligned_cols=65 Identities=11% Similarity=0.194 Sum_probs=46.2
Q ss_pred eEE-ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC------CCCeEEEEecccccC
Q 033384 52 KYL-VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD------ADGFLYMCYSTEKTF 119 (120)
Q Consensus 52 Kfl-v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd------~DGfLyl~Ys~~~~f 119 (120)
-++ |..+.||+++...|..+.++++.+-- |+.++.....+.+|++ |.-. + .+--|++......+|
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCB
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCce
Confidence 344 99999999999999999999875432 3356677788889987 3322 2 245788887754444
No 71
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=59.24 E-value=7.8 Score=24.82 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCe
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGF 108 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGf 108 (120)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .- ++..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCE
Confidence 56777888553 21 23456999999999999999999998654 3444566555667777663 33 3446
Q ss_pred EEEEec
Q 033384 109 LYMCYS 114 (120)
Q Consensus 109 Lyl~Ys 114 (120)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 776654
No 72
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=59.17 E-value=8.3 Score=25.13 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=40.6
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|+++ .-+ ++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--gI~-~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT--TCC-TTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHC--CCC-CCCEEEEEE
Confidence 4569999999999999999999987543 444566666677777763 111 344666654
No 73
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.38 E-value=11 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCCeEEEEEcC-ccCCCCchHHHHHhhccCC--------CCe-EEEEecc
Q 033384 75 EPGKALFVFVNN-TLPQTASRMDSIYKSFKDA--------DGF-LYMCYST 115 (120)
Q Consensus 75 ~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~--------DGf-Lyl~Ys~ 115 (120)
+++..|+|||+| .-+-....|.+++..|... .|| =+|.|.+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~ 71 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFES 71 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESS
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC
Confidence 467889999998 4445566888888888642 254 6666654
No 74
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=56.74 E-value=4.7 Score=26.23 Aligned_cols=61 Identities=15% Similarity=0.369 Sum_probs=39.6
Q ss_pred eEEec-CCCchHhHHHHHhhhcCCCCC-CeEEEEEcCc------------c---CCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVP-RDMSMGHFIYILSSRLHLEPG-KALFVFVNNT------------L---PQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~-~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~~------------l---p~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
..-|. .+.||++|...|..+.++++. +.|++ ++. + ...+.+|+++= -+ .+..|||.|.
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g--i~-~G~~L~l~~~ 94 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLN--LA-HGSMVYLAYE 94 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTC--CC-TTCEEECCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCC--CC-CCCEEEEEeC
Confidence 34578 899999999999999998754 44443 332 1 24455666431 12 2337898887
Q ss_pred ccc
Q 033384 115 TEK 117 (120)
Q Consensus 115 ~~~ 117 (120)
.+.
T Consensus 95 ~~~ 97 (107)
T 1wf9_A 95 GER 97 (107)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 75
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.65 E-value=13 Score=24.94 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCC-CCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDA-DGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~-DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++ |.-. +..|+|...
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~ 103 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEec
Confidence 3568999999999999999999987543 44456655566777765 3333 336666553
No 76
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=56.14 E-value=38 Score=21.88 Aligned_cols=58 Identities=9% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccC
Q 033384 46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd 104 (120)
|.|--+..-||++.-+.-+..+--...+.+++.+-- .-|+ .=..++++-|.+|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAi-iT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAI-ITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEE-ECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccceEE-EecCCcccChhhccchhhhhcCc
Confidence 556667778999999999999999999998877643 3444 556889999999999964
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=56.01 E-value=11 Score=25.48 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=40.9
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEE-EEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFV-FVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|+.+.||+++...|....++++++--.+ |-++.....+.++++. .-+ ++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i~-~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GLG-PGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TCC-TTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CCC-CCCEEEEEcc
Confidence 458999999999999999999987654444 4255545777787763 111 3446666654
No 78
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=59.79 E-value=2.6 Score=25.06 Aligned_cols=45 Identities=7% Similarity=0.030 Sum_probs=31.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+-|+.+.||+++...|..+.+++++.--.+ .++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNC 59 (76)
Confidence 448889999999999999988886543333 355444556666653
No 79
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=54.13 E-value=15 Score=24.80 Aligned_cols=62 Identities=6% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+++|-|.|.-.. + ..-.|.|..+.++..++....++.+++...--|+| ++.....+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g-----~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-DG~rI~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEEcCC-C-----CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-CCeECCCCCCHHHc
Confidence 367777774322 1 22368899999999999999999999987766766 44334445666555
No 80
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=54.07 E-value=31 Score=25.14 Aligned_cols=60 Identities=7% Similarity=-0.048 Sum_probs=42.1
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCC--CeEEEEEc-C--ccC-CCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPG--KALFVFVN-N--TLP-QTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~--~slfl~Vn-~--~lp-~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
...+++..|+.++...+++.++++++ -.|+.+-+ + .+. ..+.+|.++. -.+|..|.|-+.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999874 56676554 3 233 4456777752 334556666655
No 81
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.94 E-value=11 Score=24.01 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=37.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCC-chHHHHHhhccCCCCeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTA-SRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~-~~~~~lY~~~kd~DGfLyl~Y 113 (120)
+-|+.+.||++|...|..+.++++++-- |+.++.....+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEE
Confidence 4489999999999999999999865432 33466444444 578764 122 233666654
No 82
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.79 E-value=22 Score=21.85 Aligned_cols=58 Identities=2% Similarity=0.029 Sum_probs=36.6
Q ss_pred EEecCC-----CchHhHHHHHhhhcCCCCCCeEEEEEcCccCCC-CchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRD-----MSMGHFIYILSSRLHLEPGKALFVFVNNTLPQT-ASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~-----~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~-~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|+.+ .||++|...|..+.+++++.--. +.++..... +.+|+++ . -+ ++..|+|.-+
T Consensus 21 i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL-~~~Gk~L~D~~~~L~~~-~-i~-~g~~i~l~~~ 84 (92)
T 1wxv_A 21 LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKL-IFKGKSLKEMETPLSAL-G-IQ-DGCRVMLIGK 84 (92)
T ss_dssp EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEE-EETTEEECCSSSBHHHH-T-CC-SSEEEEEESC
T ss_pred EEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEE-EECCeecCCCcccHHHC-C-CC-CCCEEEEEec
Confidence 457774 99999999999999998654333 345543333 5578774 1 12 2335666543
No 83
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.11 E-value=11 Score=24.72 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCCCeEEEEEcC--ccCCCC---chHHHHHhhcc-C----CCCeEEEEecccc
Q 033384 74 LEPGKALFVFVNN--TLPQTA---SRMDSIYKSFK-D----ADGFLYMCYSTEK 117 (120)
Q Consensus 74 l~~~~slfl~Vn~--~lp~~~---~~~~~lY~~~k-d----~DGfLyl~Ys~~~ 117 (120)
++|++++ |||+| +-...+ ..|.+|+.+|. . ..||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 77887 222222 24778999995 2 4689999987754
No 84
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=52.64 E-value=9.5 Score=25.05 Aligned_cols=57 Identities=5% Similarity=0.060 Sum_probs=39.8
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .- ++..|+|...
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~ 81 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIWAGKQLEDGRTLSDY----NIQRESTLHLVLR 81 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCSSCEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEEE
Confidence 348899999999999999999987643 444566555666777654 22 3446777654
No 85
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.16 E-value=19 Score=22.40 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=39.8
Q ss_pred eEEecCCCchHhHHHHHhhh---cCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEecc
Q 033384 52 KYLVPRDMSMGHFIYILSSR---LHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYST 115 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys~ 115 (120)
.+-|+.+.||+++...|..+ -+++++.- -|+.++.....+.+|++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~g~~i~l~~~~ 76 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKILNDDTALKEY----KIDEKNFVVVMVTK 76 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEECCTTSBGGGG----TCCSSSEEEEEESS
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEECCCcCcHHHC----CCCCCCEEEEEEeC
Confidence 34589999999999999998 45765543 344466555667777653 33 34477776543
No 86
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.62 E-value=19 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=26.4
Q ss_pred EEecCCCchHhHHHHHhhhcCCCC-CCeEEEEE
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEP-GKALFVFV 84 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~-~~slfl~V 84 (120)
.-+|.++||+++...|.+..++++ .+.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 358999999999999999999986 45666653
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=51.53 E-value=11 Score=24.97 Aligned_cols=58 Identities=5% Similarity=0.071 Sum_probs=39.4
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.|++++...|..+.+++++.-- |+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeE-EEECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 34589999999999999999999876443 44466545666677653 22 3346666543
No 88
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.40 E-value=28 Score=22.28 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=40.0
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc-C-cc----CCCCchHHH
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN-N-TL----PQTASRMDS 97 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn-~-~l----p~~~~~~~~ 97 (120)
+-|+|.|.-.. .. -.....-|+.+.||+++...|..+.++++++---+|.+ + .. ...+.+|++
T Consensus 13 ~~v~l~It~s~-~~---~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHAN-LK---SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETT-SS---CCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECC-CC---ceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56777775422 11 11234569999999999999999999987654334443 2 22 244456665
No 89
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=51.40 E-value=36 Score=20.18 Aligned_cols=76 Identities=7% Similarity=0.074 Sum_probs=47.6
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhh---cCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-C
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSR---LHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-A 105 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~ 105 (120)
|..+-|.|.... ++ ...+-|+.+.||+++...|..+ -+++++. .-|+.++.....+.+|++. .- +
T Consensus 3 ~~~m~i~vk~~~-g~-----~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQ-QQ-----TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRDY----RIDE 71 (85)
T ss_dssp -CCEEEEEEETT-SC-----EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGGG----CCCT
T ss_pred CceEEEEEEECC-CC-----EEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHHc----CCCC
Confidence 556667775532 21 1235589999999999999997 4576543 3444566656677777663 33 4
Q ss_pred CCeEEEEeccc
Q 033384 106 DGFLYMCYSTE 116 (120)
Q Consensus 106 DGfLyl~Ys~~ 116 (120)
+..|++..+..
T Consensus 72 g~~i~l~~~~~ 82 (85)
T 2wyq_A 72 KNFVVVMVTKT 82 (85)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEcCC
Confidence 55788876544
No 90
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=51.29 E-value=14 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHhhhcCCCCCCeEEEEEcC
Q 033384 66 YILSSRLHLEPGKALFVFVNN 86 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~ 86 (120)
.-+|++|++.+++.|.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 457999999999999998875
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=50.64 E-value=15 Score=23.40 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=36.8
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.-.|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3468899999999999999999999987655555 55444556676665
No 92
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=50.26 E-value=17 Score=23.37 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhc--CCC-CCCeEEEEEcCccCCCCchHHHHHh
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRL--HLE-PGKALFVFVNNTLPQTASRMDSIYK 100 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l--~l~-~~~slfl~Vn~~lp~~~~~~~~lY~ 100 (120)
..|.|.|.- ..+... .-.+-|+.+.||+++...|..++ ..+ ..+.| ..++.....+.+|++...
T Consensus 22 ~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 22 HPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp -CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 456677743 222110 11345799999999999999876 333 33443 346666678889988654
No 93
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=50.02 E-value=39 Score=21.42 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=40.8
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCC-eEEEEEcCc----cCCCCchHHH
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGK-ALFVFVNNT----LPQTASRMDS 97 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~-slfl~Vn~~----lp~~~~~~~~ 97 (120)
++.|.|.|.-.. ++ -...-.-|+.+.||+++...|..+.++++++ .|++.-++. +...+.+|++
T Consensus 13 ~~~v~l~It~s~-~~---~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-ND---AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CS---CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CC---ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775422 11 0123356999999999999999999998754 444432232 3355667765
No 94
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.32 E-value=20 Score=23.26 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.1
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|+.+.|+++|...|..+-+++++.--.++... . ...+.+++++ .-+ .+..|+|...
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~ 81 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTP 81 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCS
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEec
Confidence 3488999999999999999999876543343333 4 4566678776 122 2246666543
No 95
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=48.06 E-value=48 Score=23.50 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=25.2
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCCCC
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEPGK 78 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~~~ 78 (120)
...+.||++.|+.+|-.+|..-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 45789999999999999999999987543
No 96
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=46.80 E-value=29 Score=23.79 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc
Q 033384 45 LPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 45 ~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 85 (120)
+|+..-....|..+.+|++++..|.+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56677778899999999999999999999986544 55454
No 97
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=46.72 E-value=20 Score=20.36 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHhhhcCCCCCCeEEEEEcC
Q 033384 66 YILSSRLHLEPGKALFVFVNN 86 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~ 86 (120)
..+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999998875
No 98
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=46.16 E-value=23 Score=23.32 Aligned_cols=58 Identities=5% Similarity=0.065 Sum_probs=40.5
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-rL~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 3458899999999999999999987654 344566555667777654 22 3447777654
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.42 E-value=11 Score=23.73 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=31.2
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+-|+.+.||++|...|..+.+++++.--.+ .++... .|.+|+++
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 459999999999999999999886533222 355433 45577654
No 100
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.78 E-value=25 Score=23.68 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=40.9
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- - .++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~G~~L~d~~tL~~y~--i-~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--L-KPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--C-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHE-EEEECCeecCCCCCHHHcC--C-CCCCEEEEEEe
Confidence 3459999999999999999999987654 3445665566677777531 1 13447777653
No 101
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=42.18 E-value=5.3 Score=26.72 Aligned_cols=45 Identities=4% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEE-EECCEECCCCCchhhh
Confidence 35888999999999999988888754333 3455545566677664
No 102
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=41.21 E-value=21 Score=21.91 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=19.3
Q ss_pred HHHhhhcCCCCCCeEEEEEcC-c---cCCCC---chHHHHHhhccC
Q 033384 66 YILSSRLHLEPGKALFVFVNN-T---LPQTA---SRMDSIYKSFKD 104 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn~-~---lp~~~---~~~~~lY~~~kd 104 (120)
.-++++|++.+++.+.+.+.+ . .|... .++.++...+.+
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~ 64 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP 64 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC-----------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc
Confidence 457899999999999998875 2 23333 478888888853
No 103
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=41.01 E-value=36 Score=23.81 Aligned_cols=58 Identities=5% Similarity=0.118 Sum_probs=40.8
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|++...
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--~I~-~gstI~Lvlr 72 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 72 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG--TCC-TTCEEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc--CCC-CCCEEEEEEE
Confidence 4589999999999999999999876543 44466556777788764 111 3346666543
No 104
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=40.48 E-value=17 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCC
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLE 75 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~ 75 (120)
..||.+.++.+|..-|+.++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999874
No 105
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.22 E-value=30 Score=21.02 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=19.1
Q ss_pred EEEcCccCCCCchHHHHHhhcc--------CCCCeEEEEeccc
Q 033384 82 VFVNNTLPQTASRMDSIYKSFK--------DADGFLYMCYSTE 116 (120)
Q Consensus 82 l~Vn~~lp~~~~~~~~lY~~~k--------d~DGfLyl~Ys~~ 116 (120)
|||+| +--....|.+++..|. ..-||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 34556 3344445666666664 2356777777654
No 106
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=39.51 E-value=28 Score=23.94 Aligned_cols=59 Identities=5% Similarity=0.100 Sum_probs=40.7
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. . -+ ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~L~d~~tL~~~-~-i~-~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY-N-IQ-KESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG-T-CC-TTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCccccccCCHhHc-C-Cc-ccceeeeeec
Confidence 3459999999999999999999987654 334466666777788763 1 11 3345666543
No 107
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=38.62 E-value=12 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.2
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCC
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLE 75 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~ 75 (120)
...+||.+.++.+|..-|++++++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3556999999999999999999876
No 108
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.56 E-value=43 Score=23.62 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcC-ccCCCCchHHHHHhhccC----------CCCeEEEEeccc
Q 033384 75 EPGKALFVFVNN-TLPQTASRMDSIYKSFKD----------ADGFLYMCYSTE 116 (120)
Q Consensus 75 ~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd----------~DGfLyl~Ys~~ 116 (120)
+++..+.|||+| .-+-....|.++|..|.. ..||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 466788899998 444566688899998864 235667777553
No 109
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.65 E-value=22 Score=23.32 Aligned_cols=61 Identities=5% Similarity=0.105 Sum_probs=39.5
Q ss_pred EecCCCchHhHHHHHhhhcCCCCC--------------CeEEEEEcCccC-CCCchHHHHHhhccCCCCeEEEEecccc
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEPG--------------KALFVFVNNTLP-QTASRMDSIYKSFKDADGFLYMCYSTEK 117 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~~--------------~slfl~Vn~~lp-~~~~~~~~lY~~~kd~DGfLyl~Ys~~~ 117 (120)
-|+.+.||+++...|..+.++++. ...-|..++... ..+.+|++ |. =+ ++.+|++.-....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I~-~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-IR-NRDEVSFIKKLGQ 98 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-CC-SSEEEEEEECSCS
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-CC-CCCEEEEEehhcc
Confidence 389999999999999999877542 133444455444 45588987 32 12 3447777655443
No 110
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=37.33 E-value=30 Score=22.21 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=37.7
Q ss_pred ecCCCchHhHHHHH-hhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC--CCCeEEEEec
Q 033384 55 VPRDMSMGHFIYIL-SSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD--ADGFLYMCYS 114 (120)
Q Consensus 55 v~~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd--~DGfLyl~Ys 114 (120)
|+.+.||+++...| ..+-++++++-- |..++.....+.+|++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 46999999999999 777687765543 4446666677788876 332 3557776543
No 111
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=37.19 E-value=30 Score=21.55 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=31.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCC-CeEEEEEcC-----ccCCCCchHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPG-KALFVFVNN-----TLPQTASRMD 96 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~-----~lp~~~~~~~ 96 (120)
--++.+.|++++...|..+.+++++ +.|.++-++ .+...+.+|+
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 3489999999999999999999865 455543221 2445555664
No 112
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=36.09 E-value=7.6 Score=27.21 Aligned_cols=45 Identities=4% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEEccccCcHHHc
Confidence 3488899999999999999998876543 33455555667777764
No 113
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=35.99 E-value=29 Score=23.53 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=23.8
Q ss_pred cCCCCCCeEEEEEcC-ccCCCCchHHHHHhhccC
Q 033384 72 LHLEPGKALFVFVNN-TLPQTASRMDSIYKSFKD 104 (120)
Q Consensus 72 l~l~~~~slfl~Vn~-~lp~~~~~~~~lY~~~kd 104 (120)
+.-.++.-|.|||+| .-+-....|.+++..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 344578899999999 556677788888888864
No 114
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=35.87 E-value=30 Score=22.43 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=21.5
Q ss_pred EEEcCccCCCCchHHHHHhhccCC--------CCeEEEEeccc
Q 033384 82 VFVNNTLPQTASRMDSIYKSFKDA--------DGFLYMCYSTE 116 (120)
Q Consensus 82 l~Vn~~lp~~~~~~~~lY~~~kd~--------DGfLyl~Ys~~ 116 (120)
|||+| +.-....|.+++..|... -||-+|.|.+.
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 83 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCH
Confidence 44566 445556677777777542 47777877654
No 115
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=35.65 E-value=23 Score=29.49 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=37.5
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCC--CCeEEE--EEcC---ccCCCCchHHHHHh
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEP--GKALFV--FVNN---TLPQTASRMDSIYK 100 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~--~~slfl--~Vn~---~lp~~~~~~~~lY~ 100 (120)
.-.++||++-||+++...++++.++++ ...|-| ..|+ ...+.+..++.|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 445679999999999999999999864 333433 2334 35578888888866
No 116
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=34.56 E-value=43 Score=22.61 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=45.5
Q ss_pred EE-ecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-C-------CCeEEEEecccccC
Q 033384 53 YL-VPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-A-------DGFLYMCYSTEKTF 119 (120)
Q Consensus 53 fl-v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~-------DGfLyl~Ys~~~~f 119 (120)
|+ |..+.||+++...|..+.++++.+--.+ -++.+...+.+|++. += . +--|++.+...+.|
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~dy----~I~~~ta~~q~~atl~Lvlr~~~~f 85 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGEC----GFTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTT----TCCGGGSBTTBCEEEEEEECCSSCC
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHHc----CCCcCcccCCCCCEEEEEEecCCCc
Confidence 44 8899999999999999999987654333 456667777788752 21 2 55888888776666
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.25 E-value=46 Score=20.64 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=12.9
Q ss_pred chHHHHHhhccC-------CCCeEEEEeccc
Q 033384 93 SRMDSIYKSFKD-------ADGFLYMCYSTE 116 (120)
Q Consensus 93 ~~~~~lY~~~kd-------~DGfLyl~Ys~~ 116 (120)
+.|.+++..|.+ .|||-+|.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 345555555532 136777777654
No 118
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=34.25 E-value=38 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.490 Sum_probs=22.9
Q ss_pred EEEcCccC-CCCchHHHHHhhccC---------CCCeEEEEecccc
Q 033384 82 VFVNNTLP-QTASRMDSIYKSFKD---------ADGFLYMCYSTEK 117 (120)
Q Consensus 82 l~Vn~~lp-~~~~~~~~lY~~~kd---------~DGfLyl~Ys~~~ 117 (120)
|||+|--+ -.++.|.+++.+|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 45666222 344567788887753 2489999887654
No 119
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=33.79 E-value=23 Score=26.49 Aligned_cols=60 Identities=7% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
++|-|-|. . .-..-.|.|..+.++..++....++.+++...--|+| ++.-...+.|..+|
T Consensus 56 e~InLKVk-~------dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 56 THINLKVS-D------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CEEEEEEE-C------SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CcEEEEEe-c------CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 45666662 2 1234578999999999999999999999987767777 55444455665554
No 120
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=33.18 E-value=35 Score=21.64 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=22.2
Q ss_pred EEEcCccC-CCCchHHHHHhhccC-------CCCeEEEEecccc
Q 033384 82 VFVNNTLP-QTASRMDSIYKSFKD-------ADGFLYMCYSTEK 117 (120)
Q Consensus 82 l~Vn~~lp-~~~~~~~~lY~~~kd-------~DGfLyl~Ys~~~ 117 (120)
|||.|--+ ...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 45555212 445577777777753 2388888887643
No 121
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=32.95 E-value=31 Score=24.97 Aligned_cols=57 Identities=5% Similarity=0.110 Sum_probs=39.3
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|+|..
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~Qr-Li~~Gk~L~D~~tL~dy--gI~-~gstI~Lvl 176 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KESTLHLVL 176 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTCBGGGG--TCC-TTCEEEECC
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEE-EEECCEECCCCCCHHHC--CCC-CCCEEEEEE
Confidence 4599999999999999999999865432 33466666677788764 111 334666543
No 122
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=32.64 E-value=36 Score=20.69 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.6
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCc
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTAS 93 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~ 93 (120)
.=+|+..|++++. ++|++++++. -+.+|+...+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 4589999999864 6779998877 4889985444444
No 123
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=31.50 E-value=38 Score=24.86 Aligned_cols=60 Identities=7% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHH
Q 033384 30 PDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDS 97 (120)
Q Consensus 30 p~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~ 97 (120)
.++|-|-|. . . -..-.|.|.++.++..++.....+.+++..+--|+| ++.-...+.|..+
T Consensus 27 ~~~I~LkV~-~-~-----g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-dG~rI~~~~TP~d 86 (200)
T 3pge_A 27 ETHINLKVS-D-G-----SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPED 86 (200)
T ss_dssp CCCEEEEEE-C-S-----SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-TTEECCTTCCTTT
T ss_pred CCeEEEEEe-c-C-----CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-CCEEcCCCCCHHH
Confidence 356666662 2 1 234578999999999999999999999987766766 4433344444443
No 124
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.42 E-value=1e+02 Score=20.81 Aligned_cols=45 Identities=7% Similarity=-0.049 Sum_probs=34.8
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHH
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSI 98 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~l 98 (120)
.-++.+.||++|...|-...+++++.-- |.-++.....+++|++.
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~~ 75 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQH 75 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHHH
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHHc
Confidence 3489999999999999999999876544 44456556778888763
No 125
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.27 E-value=94 Score=19.14 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhcCCCCC-CeEEEE
Q 033384 31 DRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRLHLEPG-KALFVF 83 (120)
Q Consensus 31 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~-~slfl~ 83 (120)
..|.|.|.... .+ .....-|+.+.||+++...|..+.+++++ +.|++.
T Consensus 6 ~~v~l~I~~~~---~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 6 SGVMVFISSSL---NS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CCEEEEEEETT---SS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred cEEEEEEEECC---CC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 34677675432 11 22345699999999999999999999864 455543
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.41 E-value=31 Score=20.63 Aligned_cols=16 Identities=0% Similarity=0.158 Sum_probs=8.1
Q ss_pred ecCCCchHhHHHHHhh
Q 033384 55 VPRDMSMGHFIYILSS 70 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk 70 (120)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555555555544433
No 127
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=29.62 E-value=44 Score=27.75 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=43.7
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEc---C--ccCC-CCchHHHHHhhccCCCCeEEEEe
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVN---N--TLPQ-TASRMDSIYKSFKDADGFLYMCY 113 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~--~lp~-~~~~~~~lY~~~kd~DGfLyl~Y 113 (120)
..|+.+.+++++...|+++++++++..|=||=. + .... ++.++.+.+++-.|.| .|+.+=
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ~ 216 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQK 216 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEEe
Confidence 479999999999999999999999888887743 1 1123 6778888776664333 555554
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=28.72 E-value=70 Score=18.81 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=24.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCc
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTAS 93 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~ 93 (120)
+-++...|++++...| ++++. .+.+.+|+...+.+.
T Consensus 18 ~~~~~~~tv~~Ll~~l----~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLGEL----EIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHHHT----TCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHHHh----CCCCC-CEEEEECCEECCCcc
Confidence 5678888999987655 55544 466889984443443
No 129
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=28.63 E-value=27 Score=21.50 Aligned_cols=29 Identities=7% Similarity=0.313 Sum_probs=23.0
Q ss_pred EecCCCchHhHHHHHhhhcCCCC-CCeEEE
Q 033384 54 LVPRDMSMGHFIYILSSRLHLEP-GKALFV 82 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~l~l~~-~~slfl 82 (120)
-|+.+.|++++...|...++++. ..++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 37788999999999999998863 445554
No 130
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.63 E-value=22 Score=21.14 Aligned_cols=11 Identities=9% Similarity=0.640 Sum_probs=6.7
Q ss_pred CCeEEEEeccc
Q 033384 106 DGFLYMCYSTE 116 (120)
Q Consensus 106 DGfLyl~Ys~~ 116 (120)
-||-+|.|.+.
T Consensus 42 ~g~afV~f~~~ 52 (88)
T 1wf0_A 42 RAFAFVTFADD 52 (88)
T ss_dssp CSCCEEECSCH
T ss_pred CCEEEEEECCH
Confidence 46666666654
No 131
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=28.42 E-value=1.1e+02 Score=19.71 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=30.8
Q ss_pred cCCCCCCCCccceEEe-cCCCchHhHHHHHhhhcCCCCCCeEEEEE
Q 033384 40 YSRTDLPDMEKTKYLV-PRDMSMGHFIYILSSRLHLEPGKALFVFV 84 (120)
Q Consensus 40 ~~~~~~p~L~k~Kflv-~~~~tv~~~~~~lRk~l~l~~~~slfl~V 84 (120)
-++++.|++... +++ |+..|+.+|.+.|.+.|.-. -.|-.|
T Consensus 17 k~~G~~pd~~dp-viL~~~GsTv~Dfa~~IH~di~~~---fkyA~V 58 (93)
T 2eki_A 17 KPKGQLPDYTSP-VVLPYSRTTVEDFCMKIHKNLIKE---FKYALV 58 (93)
T ss_dssp CCTTSCCCSSSC-EEEETTSCCHHHHHHHHCTTCTTT---EEEEEE
T ss_pred CCCCCCCCCCCC-EEEecCCCCHHHHHHHHHHHHHhh---ccEEEE
Confidence 455778888775 455 99999999999999887543 445555
No 132
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=28.39 E-value=67 Score=20.77 Aligned_cols=36 Identities=6% Similarity=0.094 Sum_probs=32.1
Q ss_pred ceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcC
Q 033384 51 TKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNN 86 (120)
Q Consensus 51 ~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 86 (120)
-++-|.++.|++.|...|-++-++++.+-..||-+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 357899999999999999999999998888888874
No 133
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=28.12 E-value=45 Score=22.75 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=45.5
Q ss_pred HhhCCCCcceEEEccCCCCCCCCccceEEecCCCchHhHHHHHhhhc-C-------CCCCCeEEEEEcC-ccCCCCchHH
Q 033384 26 VAKYPDRVPVIIEKYSRTDLPDMEKTKYLVPRDMSMGHFIYILSSRL-H-------LEPGKALFVFVNN-TLPQTASRMD 96 (120)
Q Consensus 26 r~kyp~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~l-~-------l~~~~slfl~Vn~-~lp~~~~~~~ 96 (120)
+++|+....|-|-=. ..+=.=.-.-|.||.++++++|+.-+-.-+ + ++=++.-++.-+. +.|-++.+|+
T Consensus 17 ~enF~g~qLlYigWd--~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLa 94 (119)
T 3u52_E 17 VENFHGMQLLYVYWP--DHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLK 94 (119)
T ss_dssp GGGGTTCEEEEEECT--TCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTT
T ss_pred HhhCCCCEEEEEEec--CCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHH
Confidence 456776666665332 222122344678999999999987654333 2 3323455665555 8999998887
Q ss_pred HHHhhcc
Q 033384 97 SIYKSFK 103 (120)
Q Consensus 97 ~lY~~~k 103 (120)
+.==.||
T Consensus 95 enG~~HK 101 (119)
T 3u52_E 95 EQGIDHK 101 (119)
T ss_dssp TTTCCTT
T ss_pred HcCCCch
Confidence 6433333
No 134
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.05 E-value=59 Score=19.48 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=5.8
Q ss_pred CeEEEEeccc
Q 033384 107 GFLYMCYSTE 116 (120)
Q Consensus 107 GfLyl~Ys~~ 116 (120)
||-+|.|.+.
T Consensus 53 g~afV~f~~~ 62 (99)
T 2div_A 53 GYCFVEFADL 62 (99)
T ss_dssp EEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 5666666543
No 135
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=26.24 E-value=86 Score=23.57 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=32.8
Q ss_pred ccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 49 EKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 49 ~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
+.+-|.=..+++..+|...+++.=.++ +.| .|+ +++..+.|.+-|..|+|+.|+.
T Consensus 32 ~~~~y~D~~di~~~efy~~~~~~~~~p-~TS--------qps----~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 32 DNEEFCDDGQLDIHRMLDILEKHKGRS-YTA--------CPG----IDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp SSCEEECSTTCCHHHHHHHHHTCCSCC-EEE--------CCC----HHHHHHHHTTCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCc-eec--------CCC----HHHHHHHHhcCCcEEEEECCCc
Confidence 344455556788899999887542222 211 333 3344444444577999998874
No 136
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.16 E-value=39 Score=21.00 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=33.7
Q ss_pred EecCCCchHhHHHHHhhh-cCCCCCCeEEEEEc-CccCCCCchHHHHHhhccC-CCCeEEE
Q 033384 54 LVPRDMSMGHFIYILSSR-LHLEPGKALFVFVN-NTLPQTASRMDSIYKSFKD-ADGFLYM 111 (120)
Q Consensus 54 lv~~~~tv~~~~~~lRk~-l~l~~~~slfl~Vn-~~lp~~~~~~~~lY~~~kd-~DGfLyl 111 (120)
-|+.+.||+++...|.+. -++++..--.+|.. +.....+.+|++ |+- ++.+||+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~----y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQK----LPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTT----SSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHH----cCCCCCCEEEE
Confidence 489999999999999984 56665433333343 344555566654 222 3446765
No 137
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.12 E-value=31 Score=21.70 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=36.0
Q ss_pred EEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEec
Q 033384 53 YLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
+-|+.+.||++|...|..+.+++++.--.+ .++.....+ +|++ |.= ++..|+|--+
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~Gk~L~D~-tL~~----~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM-VKGGTLKDD-DWGN----IKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ETTEECCSS-CCCS----CCCCSSCEEECCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCcCCCCC-CHHH----CCCCCCCEEEEEec
Confidence 448999999999999999999886433222 466545544 6554 222 3346666443
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.61 E-value=76 Score=19.04 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=12.2
Q ss_pred ccceEE--ecCCCchHhHHHHHhhh
Q 033384 49 EKTKYL--VPRDMSMGHFIYILSSR 71 (120)
Q Consensus 49 ~k~Kfl--v~~~~tv~~~~~~lRk~ 71 (120)
..+-|+ +|.+.|-.++..++.+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALREL 43 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHT
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhc
Confidence 334444 56666666665555443
No 139
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=24.58 E-value=55 Score=19.84 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=35.1
Q ss_pred ecCCCchHhHHHHHhhhcCCCCCCeEEEEEc-C-ccC-C-CCchHHHHHhhccCCCCeEEEEecc
Q 033384 55 VPRDMSMGHFIYILSSRLHLEPGKALFVFVN-N-TLP-Q-TASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn-~-~lp-~-~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
++.+.||+++...|..+.++++..--.+|-. . .+. + .+.+++++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 7789999999999999999875432223321 1 221 2 455666541 12 23467776654
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.55 E-value=87 Score=19.34 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=8.5
Q ss_pred ecCCCchHhHHHHHh
Q 033384 55 VPRDMSMGHFIYILS 69 (120)
Q Consensus 55 v~~~~tv~~~~~~lR 69 (120)
+|.+.|-.++..++.
T Consensus 33 lp~~~t~~~l~~~F~ 47 (114)
T 2cq4_A 33 LAARIRPRDLEDFFS 47 (114)
T ss_dssp CCTTCCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH
Confidence 556666666555553
No 141
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.52 E-value=48 Score=20.34 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=36.6
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCC-chHHHHHhhccC-CCCeEEEEec
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTA-SRMDSIYKSFKD-ADGFLYMCYS 114 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~-~~~~~lY~~~kd-~DGfLyl~Ys 114 (120)
.+-|+.+.||+++...|..+. ...+.|+ .++.....+ .+|++. .- ++..|+|...
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~--~~~qrLi--~~Gk~L~D~~~tL~~y----~i~~g~~i~l~~~ 77 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ--ESQMKLI--YQGRLLQDPARTLSSL----NITNNCVIHCHRS 77 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST--TTTCEEE--ETTEECCCSSCBTTTT----TCCTTEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHhhC--cCcEEEE--ECCEEccCCcCCHHHc----CCCCCCEEEEEEC
Confidence 345899999999999998876 4444443 466555566 788763 22 3446777654
No 142
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.98 E-value=68 Score=20.70 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCCccceEEecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCc
Q 033384 46 PDMEKTKYLVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNT 87 (120)
Q Consensus 46 p~L~k~Kflv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~ 87 (120)
|...+.+..|.++.++.|+...-.++.++++++- -|.-|+.
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 4467888999999999999999999999987543 3333443
No 143
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=23.63 E-value=3e+02 Score=22.36 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=35.3
Q ss_pred cceEEecCCCchHhHHHHHhhhcCCCC-CC--eEEEEEcC--ccCCCCchHHHHHh
Q 033384 50 KTKYLVPRDMSMGHFIYILSSRLHLEP-GK--ALFVFVNN--TLPQTASRMDSIYK 100 (120)
Q Consensus 50 k~Kflv~~~~tv~~~~~~lRk~l~l~~-~~--slfl~Vn~--~lp~~~~~~~~lY~ 100 (120)
...+.|....|+.++...|-++|+|.+ .+ +||+-.++ ....++..+.++..
T Consensus 228 ~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D~~~ 283 (555)
T 3au4_A 228 SCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVADVLA 283 (555)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhHHHH
Confidence 346789999999999999999999985 33 45443223 22456666666543
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=23.54 E-value=90 Score=20.36 Aligned_cols=36 Identities=14% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEcCccC-CCCchHHHHHhhccC---------CCCeEEEEecccc
Q 033384 82 VFVNNTLP-QTASRMDSIYKSFKD---------ADGFLYMCYSTEK 117 (120)
Q Consensus 82 l~Vn~~lp-~~~~~~~~lY~~~kd---------~DGfLyl~Ys~~~ 117 (120)
|||+|--+ -.+..|.+++..|.. .-||-+|.|.+.+
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 45666322 344567788887743 2578888887653
No 145
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.37 E-value=51 Score=25.03 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC--C-------CCCc-cceEEecCCC---chHhHHHHHh---hhcCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD--L-------PDME-KTKYLVPRDM---SMGHFIYILS---SRLHLEP 76 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~-------p~L~-k~Kflv~~~~---tv~~~~~~lR---k~l~l~~ 76 (120)
-|.|||.+-.+...+.-..|+|||+--...+- + -.+. .--.++|.-. +-.++....+ ....
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~--- 130 (300)
T 3eb2_A 54 LGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVE--- 130 (300)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCS---
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCC---
Confidence 46799999999999988899999996543221 0 0000 0112232221 3334444333 3333
Q ss_pred CCeEEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEecccc
Q 033384 77 GKALFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTEK 117 (120)
Q Consensus 77 ~~slfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~~ 117 (120)
-.+++|=+- ...-..+++.+|- + .+++.-|.+++-+
T Consensus 131 -lPiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssgd 169 (300)
T 3eb2_A 131 -IPVVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDASTN 169 (300)
T ss_dssp -SCEEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSSB
T ss_pred -CCEEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCCC
Confidence 457887642 1222234677773 3 3568888887643
No 146
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=23.37 E-value=1e+02 Score=19.62 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=28.2
Q ss_pred eEEEEEcCccC-CCCchHHHHHhhccC--------CCCeEEEEeccc
Q 033384 79 ALFVFVNNTLP-QTASRMDSIYKSFKD--------ADGFLYMCYSTE 116 (120)
Q Consensus 79 slfl~Vn~~lp-~~~~~~~~lY~~~kd--------~DGfLyl~Ys~~ 116 (120)
+-.|||.|--+ -..+.|.+|+.+|.. .-||=.|.|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 55778999556 455689999999864 367777888765
No 147
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=23.34 E-value=71 Score=28.85 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=35.0
Q ss_pred eEEecCCCchHhHHHHHhhhcCCCCC-----CeEEEEEcCccC------CCCchHHHHHhhc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLHLEPG-----KALFVFVNNTLP------QTASRMDSIYKSF 102 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~l~~~-----~slfl~Vn~~lp------~~~~~~~~lY~~~ 102 (120)
+|-|+.++|+.+|+..+++++++... .+ -||. .+.| ..+.+|.+|++.-
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~-~~~~~~~~~~~l~~~l~~l~~~~ 980 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYA-SFFPPKKLKERLNLPITQLVKLV 980 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEE-TTCCHHHHHHHTTSBHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEe-cCCCchhhHHhccCCHHHHHHhh
Confidence 56787899999999999999887532 11 1333 2444 4677899999874
No 148
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.16 E-value=72 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEcc
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKY 40 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~ 40 (120)
-|.|||.+-.+...+.-..++|||+--.
T Consensus 64 Ls~~Er~~v~~~~~~~~~gr~pviaGvg 91 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPKNRLLLAGSG 91 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCcEEEecC
Confidence 4679999999999999999999999654
No 149
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=22.03 E-value=52 Score=20.00 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=26.4
Q ss_pred EEecCCCchHhHHHHHhhhcC------CCCC----CeEEEEEcCccCCCC
Q 033384 53 YLVPRDMSMGHFIYILSSRLH------LEPG----KALFVFVNNTLPQTA 92 (120)
Q Consensus 53 flv~~~~tv~~~~~~lRk~l~------l~~~----~slfl~Vn~~lp~~~ 92 (120)
+-+|...|++++...|..+.. +... ..+-++||+.....+
T Consensus 22 ~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~ 71 (89)
T 3po0_A 22 VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG 71 (89)
T ss_dssp EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT
T ss_pred EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC
Confidence 446778899999999987752 2211 236788998433334
No 150
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.02 E-value=59 Score=24.76 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC--C-------CCCc-cceEEecCC---CchHhHHHHHhhhcCCCCCCe
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD--L-------PDME-KTKYLVPRD---MSMGHFIYILSSRLHLEPGKA 79 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~-------p~L~-k~Kflv~~~---~tv~~~~~~lRk~l~l~~~~s 79 (120)
-|.|||.+-.+...+.-..++|||+--...+- + -.+. .--.++|.- .+-.++..+.+.=..-. .-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 46799999999999988899999996543211 0 0000 011223322 13334444433222111 345
Q ss_pred EEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 80 LFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 80 lfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
+++|=+- ...-..+++.+|- ++ +++.-|.+|+-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 8887541 2223345677776 33 45778887764
No 151
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=21.81 E-value=45 Score=19.79 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCCchHhHHHHHhhhcCCCCC-CeEEEEEcC-ccCCCCchH
Q 033384 57 RDMSMGHFIYILSSRLHLEPG-KALFVFVNN-TLPQTASRM 95 (120)
Q Consensus 57 ~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~-~lp~~~~~~ 95 (120)
...|++++...|..+-.+... +.+-+.||+ .++..+..+
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l 59 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPL 59 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCC
Confidence 567999999988765333321 467788998 446555443
No 152
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=21.79 E-value=62 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.2
Q ss_pred HHHhhhcCCCCCCeEEEEEc
Q 033384 66 YILSSRLHLEPGKALFVFVN 85 (120)
Q Consensus 66 ~~lRk~l~l~~~~slfl~Vn 85 (120)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45799999999999999997
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.69 E-value=90 Score=17.46 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=8.4
Q ss_pred CCeEEEEecccc
Q 033384 106 DGFLYMCYSTEK 117 (120)
Q Consensus 106 DGfLyl~Ys~~~ 117 (120)
-|+-+|.|.+.+
T Consensus 41 ~g~afV~f~~~~ 52 (75)
T 1iqt_A 41 RGFCFITFKEEE 52 (75)
T ss_dssp CCCEEEECSSSH
T ss_pred CCEEEEEECCHH
Confidence 467888887654
No 154
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.48 E-value=63 Score=24.30 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC--CCCC-------c-cceEEecCCC---chHhHHHHH---hhhcCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD--LPDM-------E-KTKYLVPRDM---SMGHFIYIL---SSRLHLEP 76 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~p~L-------~-k~Kflv~~~~---tv~~~~~~l---Rk~l~l~~ 76 (120)
-|.|||.+-.+...+.-..|+|||+--...+- +-.+ . .--.++|.-. |-.++..+. -....+
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~l-- 127 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINL-- 127 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSS--
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 47799999999999888889999987654221 0000 0 0012233321 323333333 333333
Q ss_pred CCeEEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 77 GKALFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 77 ~~slfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
.+++|=+- ...-..+++.+|-+++ +++.-|.+|+-
T Consensus 128 --PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 128 --PIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp --CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred --CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57777542 1223345788887444 45777777654
No 155
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=21.35 E-value=84 Score=24.01 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC---------CCCCc--cceEEecCCC---chHhHHHHHhhhcCCCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD---------LPDME--KTKYLVPRDM---SMGHFIYILSSRLHLEPGK 78 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~---------~p~L~--k~Kflv~~~~---tv~~~~~~lRk~l~l~~~~ 78 (120)
-|.|||.+-.+...+.-..++|||+--...+- +-.+. .--.++|.-. +-.++..+.+.=..- ..-
T Consensus 57 Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~l 135 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SDL 135 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCC
Confidence 46799999999999999999999996543211 11111 1122333221 233444433322111 134
Q ss_pred eEEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEecc
Q 033384 79 ALFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYST 115 (120)
Q Consensus 79 slfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~ 115 (120)
.+++|=+- ...-..+++.+|-+ + +++.-|.+|+
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~-~---pnIvgiKdss 171 (311)
T 3h5d_A 136 PIIIYNIPGRVVVELTPETMLRLAD-H---PNIIGVKECT 171 (311)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHHT-S---TTEEEEEECS
T ss_pred CEEEEecccccCCCCCHHHHHHHhc-C---CCEEEEEeCC
Confidence 57877541 12223345677753 2 5677788776
No 156
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.19 E-value=65 Score=24.22 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 51 MTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999999999888889999987654
No 157
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.12 E-value=66 Score=24.33 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 12 EHSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 12 ~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 347899999999999988899999996543
No 158
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.07 E-value=60 Score=20.30 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=27.3
Q ss_pred eEEecCCCchHhHHHHHhhhcC-CC---------CCCeEEEEEcCccCCCCc
Q 033384 52 KYLVPRDMSMGHFIYILSSRLH-LE---------PGKALFVFVNNTLPQTAS 93 (120)
Q Consensus 52 Kflv~~~~tv~~~~~~lRk~l~-l~---------~~~slfl~Vn~~lp~~~~ 93 (120)
.+-++...|++++...|..+.. +. ....+-++||+...+.+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 3446788999999999877631 11 124577899984443343
No 159
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.97 E-value=66 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999999988899999996543
No 160
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.95 E-value=64 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEcc
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKY 40 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~ 40 (120)
-|.|||.+-.+...+.-..|+|||+--.
T Consensus 62 Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4679999999999998889999999764
No 161
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.87 E-value=66 Score=24.25 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC--C-------CCCc-cceEEecCCC---chHhHHHHHh---hhcCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD--L-------PDME-KTKYLVPRDM---SMGHFIYILS---SRLHLEP 76 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~-------p~L~-k~Kflv~~~~---tv~~~~~~lR---k~l~l~~ 76 (120)
-|.|||.+-.+...+.-..++|||+--...+- + -.+. .--.++|.-. |-.++..+.+ ....+
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~l-- 127 (294)
T 2ehh_A 50 LTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDI-- 127 (294)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCS--
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 47799999999999888889999987654221 0 0010 0112233321 3333333333 33333
Q ss_pred CCeEEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 77 GKALFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 77 ~~slfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
.+++|=+- ...-..+++.+|-+++ +++.-|.+|+-
T Consensus 128 --PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKds~g 165 (294)
T 2ehh_A 128 --PIIIYNIPSRTCVEISVDTMFKLASEC---ENIVASKESTP 165 (294)
T ss_dssp --CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred --CEEEEeCCcccCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 57777542 1223345677786444 45777777653
No 162
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.83 E-value=65 Score=24.50 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 66 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 94 (304)
T 3cpr_A 66 TTAAEKLELLKAVREEVGDRAKLIAGVGT 94 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEecCCC
Confidence 46799999999999888899999987654
No 163
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.76 E-value=68 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 12 EHSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 12 ~~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
.-|.|||.+-.+...+.-..|+|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 50 TLSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 347799999999999988899999996543
No 164
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.73 E-value=62 Score=24.81 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccCCCC--C-------CCCc-cceEEecCC---CchHhHHHHH---hhhcCCCC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYSRTD--L-------PDME-KTKYLVPRD---MSMGHFIYIL---SSRLHLEP 76 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~--~-------p~L~-k~Kflv~~~---~tv~~~~~~l---Rk~l~l~~ 76 (120)
-|.|||.+-.+...+.-..++|||+--...+- + -.+. .--.++|.- .+-.++.... -....
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~--- 150 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIG--- 150 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS---
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC---
Confidence 46799999999999988899999996543211 0 0010 011222221 1223333333 34433
Q ss_pred CCeEEEEEcC---ccCCCCchHHHHHhhccCCCCeEEEEeccc
Q 033384 77 GKALFVFVNN---TLPQTASRMDSIYKSFKDADGFLYMCYSTE 116 (120)
Q Consensus 77 ~~slfl~Vn~---~lp~~~~~~~~lY~~~kd~DGfLyl~Ys~~ 116 (120)
-.+++|=+- ...-..+++.+|..++ +++.-|.+++-
T Consensus 151 -lPiilYn~P~~tg~~l~~~~~~~L~a~~---pnIvgiKdssg 189 (315)
T 3na8_A 151 -VPVMLYNNPGTSGIDMSVELILRIVREV---DNVTMVKESTG 189 (315)
T ss_dssp -SCEEEEECHHHHSCCCCHHHHHHHHHHS---TTEEEEEECSS
T ss_pred -CcEEEEeCcchhCcCCCHHHHHHHHhcC---CCEEEEECCCC
Confidence 357887541 1222235777875555 45777887754
No 165
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=20.72 E-value=88 Score=23.57 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 53 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 81 (294)
T 3b4u_A 53 VGSRERQAILSSFIAAGIAPSRIVTGVLV 81 (294)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 47799999999999988899999987654
No 166
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.60 E-value=69 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (292)
T 2ojp_A 51 LNHDEHADVVMMTLDLADGRIPVIAGTGA 79 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 47799999999999888889999987654
No 167
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.49 E-value=68 Score=24.45 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..|+|||+--..
T Consensus 58 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 86 (309)
T 3fkr_A 58 ITDDERDVLTRTILEHVAGRVPVIVTTSH 86 (309)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999999999888899999997654
No 168
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.39 E-value=84 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=7.9
Q ss_pred ecCCCchHhHHHHHhh
Q 033384 55 VPRDMSMGHFIYILSS 70 (120)
Q Consensus 55 v~~~~tv~~~~~~lRk 70 (120)
+|.+.|-.++..++.+
T Consensus 8 Lp~~~t~~~l~~~F~~ 23 (101)
T 2hvz_A 8 LGTGAGKGELERAFSY 23 (101)
T ss_dssp CCSSCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 3455555555544443
No 169
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.33 E-value=68 Score=24.13 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcceEEEccC
Q 033384 13 HSFDERLEESKAIVAKYPDRVPVIIEKYS 41 (120)
Q Consensus 13 ~~~e~R~~e~~~~r~kyp~~ipVIvE~~~ 41 (120)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 47799999999999888899999987654
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=73 Score=18.39 Aligned_cols=10 Identities=10% Similarity=0.378 Sum_probs=6.3
Q ss_pred CeEEEEeccc
Q 033384 107 GFLYMCYSTE 116 (120)
Q Consensus 107 GfLyl~Ys~~ 116 (120)
|+-+|.|.+.
T Consensus 49 g~afV~f~~~ 58 (85)
T 2ytc_A 49 QCAFIQFATR 58 (85)
T ss_dssp TEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 6666666654
No 171
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=20.09 E-value=62 Score=19.10 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=23.0
Q ss_pred cCCCchHhHHHHHhhhcC-----CCCCCeEEEEEcCccCCCC
Q 033384 56 PRDMSMGHFIYILSSRLH-----LEPGKALFVFVNNTLPQTA 92 (120)
Q Consensus 56 ~~~~tv~~~~~~lRk~l~-----l~~~~slfl~Vn~~lp~~~ 92 (120)
+...|++++...|..+.. ++ ...+.+.||+...+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~-~~~~~v~vN~~~v~~~ 63 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALE-DGKLLAAVNQTLVSFD 63 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHC-CTTCEEEETTEECCTT
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhc-CCCEEEEECCEECCCC
Confidence 456799999988876531 33 2346789998433333
No 172
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=20.04 E-value=1.5e+02 Score=22.47 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=39.7
Q ss_pred CccceE-EecCCCchHhHHHHHhhhcCCCCCCeEEEEEcCccCCCCchHHHHHhhccC-CCCeEEEEeccc
Q 033384 48 MEKTKY-LVPRDMSMGHFIYILSSRLHLEPGKALFVFVNNTLPQTASRMDSIYKSFKD-ADGFLYMCYSTE 116 (120)
Q Consensus 48 L~k~Kf-lv~~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~lp~~~~~~~~lY~~~kd-~DGfLyl~Ys~~ 116 (120)
++.+-| .=..+++..+|...++..-+-.++.| .|++ ..+.++|++..+ .|..|+|+.|+.
T Consensus 34 ~~~~~y~~D~~di~~~efy~~~~~~~~~~p~TS--------qps~-~~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 34 FDGETYYRDGVDITRDECYQRMVDDPKLFPKTS--------LPSV-ESYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSSCEEEBTTTBCHHHHHHHHHHCTTCCCEEE--------CCCH-HHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred ECCEEEecCCCCCCHHHHHHHHHhCCCCCceec--------CCCH-HHHHHHHHHHHHCCCeEEEEECCCc
Confidence 355567 65668999999999976411122222 3443 467888888755 377999998874
No 173
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=20.01 E-value=93 Score=18.70 Aligned_cols=11 Identities=9% Similarity=0.570 Sum_probs=7.0
Q ss_pred CeEEEEecccc
Q 033384 107 GFLYMCYSTEK 117 (120)
Q Consensus 107 GfLyl~Ys~~~ 117 (120)
||-+|.|.+.+
T Consensus 51 g~afV~f~~~~ 61 (102)
T 2xs2_A 51 GYGFVSFYNDV 61 (102)
T ss_dssp EEEEEEESSCC
T ss_pred ceEEEEECCHH
Confidence 66777776543
Done!