BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033385
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 189 bits (479), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 97/113 (85%)
Query: 2 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
++ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLP
Sbjct: 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 62 EEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
EEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL + L
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL 114
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 188 bits (478), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
YPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL + L
Sbjct: 62 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL 112
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 188 bits (478), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 5 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 64
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
YPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL + L
Sbjct: 65 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL 115
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 188 bits (477), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
+ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEE
Sbjct: 7 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 66
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
YPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL + L
Sbjct: 67 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL 117
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 95/109 (87%)
Query: 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYP
Sbjct: 2 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 61
Query: 66 MAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
MAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL + L
Sbjct: 62 MAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALL 110
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 97/113 (85%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
YPM APKVRFLTKIYHPNID+LGRICLD+LK WSPALQIRTVLL + L S
Sbjct: 64 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLAS 116
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 97/113 (85%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
YPM APKVRFLTKIYHPNID+LGRICLD+LK WSPALQIRTVLL + L S
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 172 bits (435), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 96/113 (84%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
YPM APKVRFLTKIYHPNID+LGRI LD+LK WSPALQIRTVLL + L S
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
M PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL + L S
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSS 112
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
M PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL + L S
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSS 112
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 95/113 (84%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
YPM APKVRFLTKIYHP ID+LGRI LD+LK WSPALQIRTVLL + L S
Sbjct: 62 YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLAS 114
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY GGVF L + P +YP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F TKIYHPNI+ G ICLDILKD+WSPAL I VLL
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLL 124
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 70/101 (69%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RRI KE + + +P SA P D++ ++ I GP SPY+GG+F L++ P +YP
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
AP+V F+TK+YHPNI+K G ICLDILKD+WSPAL + VLL
Sbjct: 67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLL 107
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP SPY GGVF L + P +YP
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PK+ F TKIYHPNI+ G ICLDILKD+WSPAL + VLL
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLL 105
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE Q L +P SA P D++ ++ I+GP+ SPY+GGVF L + P +YP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F TKIYHPNI+ G ICLDIL+ +WSPAL + VLL
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 109
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 67/106 (63%)
Query: 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
NS +RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P
Sbjct: 9 NSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
+YP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 69 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 114
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 67/106 (63%)
Query: 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
NS +RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
+YP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 69 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 114
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 109
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 82 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 122
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 72 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 112
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 103
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE Q L +P SA P D++ ++ I+GP +SPY+GGVF L + P +YP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 107
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI +E L +P SA P D++ ++ I+GP SPY GGVF L + P +YP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+D+WSPAL I VLL
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLL 104
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +W PAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLL 106
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLD L+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLL 106
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ +GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
R+ +E L +EP PGI+ +D M ILG +PYE GVFKLE+ +PE YP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 69 PKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVL 107
P++RFLT IYHPNID GRICLD+L K W P+L I TVL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVL 110
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 70/100 (70%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ +RL +P G+S +PSE+N+ +N +I GP +P+E G FKL + EEYP
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
P VRFL+K++HPN+ G ICLDIL+++WSP + ++L
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSIL 106
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G I LDIL+ +WSPAL+I VLL
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLL 103
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLL
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 107
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLL
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 106
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 70/100 (70%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ +R+ + PG+SASP DN+ +N MI+GP +PYE G F+L L EEYP
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
P V+FL++++HPN+ G ICLDIL+++W+P + ++L
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASIL 106
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLL
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 104
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLL
Sbjct: 82 PPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLL 122
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 64/105 (60%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
S +RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ E
Sbjct: 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
YP PKV F T+IYH NI+ G ICLDILKD WSPAL I VLL
Sbjct: 107 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 151
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLL
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 110
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLL
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 106
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ ++L +P G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
P V+F++K++HPN+ G ICLDIL+++WSP + +L
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL 109
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
RR++++ ++L +P G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
P V+F++K++HPN+ G ICLDIL+++WSP + +L
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL 106
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLL
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 122
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 64/105 (60%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
S +RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ +
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
YP PKV F T+IYH NI+ G ICLDILKD WSPAL I VLL
Sbjct: 62 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 106
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 71/107 (66%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+R++++ +RL +P GIS +P ++N+ +N +I GP +P++GG FKL L E+YP
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
P VRF+++++HPNI G ICLDIL+++WSP + +L + L
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 62/101 (61%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P A P D+M ++ I+GP SPY+GGVF L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PKV F T+IYHP I+ G I LDIL+ +WSPAL I VLL
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLL 104
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 62/101 (61%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+RI KE L +P A P D++ ++ I+GP S Y+GGVF L + P +YP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
PK+ F TKIYHPNI+ G I LDIL+ +WSPAL + VLL
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLL 110
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Query: 4 SNLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
NLP II KE L ++P GI P+E+++ V I GP +PY GG+F+++L
Sbjct: 8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67
Query: 60 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
L +++P + PK FLTKI+HPN+ G IC+++LK W+ L IR VLL
Sbjct: 68 LGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLL 116
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
R+ KE + + +E I A + N + I GP +PYEGG F L + +P +YP
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 69 PKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
PK++F+TKI+HPNI + G ICLD+LK++WSPAL IRT LL + L
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALL 133
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 8 RRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+RI+KE Q + +PA I+ SE ++ + LGP +PYEGG F +++ +P EYP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 67 AAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
PK++F TK+YHPNI + G ICLDILK+ WSP + +++ L+ + L S
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQS 114
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 11 IKETQRLL-SEPAP------GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
I++ QR SEPA G+SA ++ + I GP +PYEGG F L++ +P +
Sbjct: 44 IQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 103
Query: 64 YPMAAPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
YP PK++F+TKI+HPNI + G ICLDILK +WSPAL IRT LL + L
Sbjct: 104 YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
S+ +RI+KE Q + +PA I+ SE ++ + LGP +PYEGG F +++ +P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 63 EYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLRGEYFLFS 116
EYP PK++F TK+YHPNI + G ICLDIL++ WSP + +++ L+ + L S
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQS 115
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 1 MANSNLP-RRIIKETQRLLSEPAPG---ISASPSEDNMRYFNVMILGPTQSPYEGGVFKL 56
MA +N+ +RI +E + +L I ++N I GP +PYEGG ++L
Sbjct: 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62
Query: 57 ELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTV 106
E+ +PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTV
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTV 106
+PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTV
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTV 106
+PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTV
Sbjct: 78 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 126
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTV 106
+PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTV
Sbjct: 63 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 64
++ +R+ +E + LL PGI+A P DN+ + + GP + YE +KL L P +Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 65 PMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
P P V+F T +HPN+D+ G ICLDILK+ W+ + +RT+LL + L
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLL 118
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLEL 58
MAN + R R KE + I ++N I GP +PYEGG ++LE+
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTV 106
+PE YP PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTV
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%)
Query: 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
+R+ +E L+ GISA P DN+ + I G + YE +KL L P YP
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFL 114
AP V+FLT YHPN+D G I LDILK+KWS +RT+LL + L
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 14/115 (12%)
Query: 8 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+R++KE Q+L+ + PGI A P SE+N+ ++ +I GP +PY GVF +L P++YP+
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 67 AAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLL 108
+ PK+ F I HPNI G +C+ IL +++WSP + +LL
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 14/111 (12%)
Query: 12 KETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70
++ L P G SA +DN Y + V+I+GP + YEGGVFK L P++YP+ PK
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 71 VRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLL 108
++F+T+I+HPN+DK G +C+ IL +++W P + T+++
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Query: 21 PAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79
P G SA +DN Y + V+++GP + YEGG FK L P +YP PK++F+++I+H
Sbjct: 19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWH 78
Query: 80 PNIDKLGRICLDILKD-------------KWSPALQIRTVLL 108
PNIDK G +C+ IL D +W P + T+LL
Sbjct: 79 PNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILL 120
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 37 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKD 95
F+VM GP + YEGG++K+ + LP++YP A+P + F+ K+ HPN+D+ G +CLD++
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 96 KWSPALQIRTVL 107
W+P + V
Sbjct: 91 TWTPLYSLVNVF 102
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 6 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 64
Query: 60 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTV 106
P +YP++ PK+RF +++HPNI GR+C+ IL ++WSP + +
Sbjct: 65 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 124
Query: 107 LL 108
LL
Sbjct: 125 LL 126
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
M + + + ++ E + L EP G + E ++ + V I GP + YEGG FK L
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 60 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTV 106
P +YP + P RFLTK++HPNI + G +C+ IL ++W+P +RT+
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 107 LL 108
LL
Sbjct: 123 LL 124
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 4 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 60 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTV 106
P +YP++ PK+RF +++HPNI GR+C+ IL ++WSP + +
Sbjct: 63 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 122
Query: 107 LL 108
LL
Sbjct: 123 LL 124
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELF 59
MA + L +R++ E ++L P GI A P +E+N + +I+GP + +E GVF L
Sbjct: 3 MAGTAL-KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 60 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTV 106
P +YP++ PK+RF +++HPNI GR+C+ IL ++WSP + +
Sbjct: 62 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 121
Query: 107 LL 108
LL
Sbjct: 122 LL 123
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 8 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+R++ E ++L P GI A P +E+N + +I+GP + +E GVF L P +YP+
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 67 AAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLL 108
+ PK+RF +++HPNI GR+C+ IL ++WSP + +LL
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 120
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 8 RRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM 66
+ ++ E + L EP G + E ++ + V I GP + YEGG FK L P +YP
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 67 AAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLL 108
+ P RFLTK++HPNI + G +C+ IL ++W+P +RT+LL
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 121
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
R++KE + L +P P + S+D N+ ++ ++L P Q PY F L + P EYP
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVL 107
P ++F TKIYHPN+D+ G+ICL I+ + W P + VL
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVL 107
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67
R++KE + L +P P + S+D N+ ++ ++L P Q PY F L + P EYP
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVL 107
P ++F TKIYHPN+D+ G+ICL I+ + W P + VL
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVL 104
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 37 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKD 95
F V GP +PYEGGV+K+ + LP++YP +P + F+ KI+HPNID+ G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 96 KWSPALQIRTVL 107
W+ + +
Sbjct: 113 TWTALYDLTNIF 124
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 30 SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 89
E N+ + +I+ P PY+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 30 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 88
Query: 90 LDILK-DKWSPALQIRTVL 107
L ++ + W PA + V+
Sbjct: 89 LPVISAENWKPATKTDQVI 107
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 30 SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 89
E N+ + +I+ P PY+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 28 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 86
Query: 90 LDILK-DKWSPALQIRTVL 107
L ++ + W PA + V+
Sbjct: 87 LPVISAENWKPATKTDQVI 105
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICL 90
D + F V GP +PYE G + L + LP +YP +P + F +I HPN+D + G +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 91 DILKDKWSPALQIRTVL 107
D++ W+P Q+ +
Sbjct: 95 DVINQTWTPMYQLENIF 111
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 4 SNLPRRIIKETQRLLSEPAP-GISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLE 57
S+L + ++E ++ P G A P + ++ + V I G ++ +EGG++KL
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 58 LFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLL 108
+ PEEYP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILL 120
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 71 YPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 40 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP 99
+I+ P + Y G L E YP+ PKV L KI+HPNID G +CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 100 ALQIRTVLLRGEYFLF 115
AL ++++ + G FLF
Sbjct: 128 ALDLQSI-ITGLLFLF 142
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 69 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 115
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 114
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 13 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 72
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL
Sbjct: 73 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 119
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 10 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 67
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLF 115
PKV+ T +YHPNID G +CL+IL++ W P L I +++ +Y
Sbjct: 68 PKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFL 114
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HP + G +CL IL++ W PA+ I+ +LL
Sbjct: 71 YPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 10 IIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
++KE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVL 107
PKV+ LTKI+HPNI + G ICL +L++ W+P ++ V+
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 10 IIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
++KE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVL 107
PKV+ LTKI+HPNI + G ICL +L++ W+P ++ V+
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G + L IL++ W PA+ I+ +LL
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILL 114
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 9 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
R+ +E + + G A P+++ N+ + I G +P+EGG+FKL + ++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
YP + PK +F ++HPN+ G + L IL++ W PA+ I+ +LL
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILL 114
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 2 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
A + +R+ ++ R+ +P P I A P N+ ++ ++ GP +PYEGG + +L P
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFP 70
Query: 62 EEYPMAAPKVRFLTKIYHPN--IDKLGRICLDILK---DKWSPALQIRTVLLRGEYFLFS 116
E+P P + +T PN R+CL I D W+PA + T+L F+
Sbjct: 71 REFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE 126
Query: 117 RGRT 120
+G T
Sbjct: 127 KGPT 130
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 30 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 87
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLF 115
PKV+ T +YHPNID G + L+IL++ W P L I +++ +Y
Sbjct: 88 PKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFL 134
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
M N+N RI KE L+ P + +N+R + V +G + Y V+KL++
Sbjct: 4 MGNAN--YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIF 61
Query: 61 PEEYPMAAPKVRFLTK-IYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
P++YP+ P V FL K H ++ G ICL +L D ++P+L I ++L
Sbjct: 62 PDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVL 110
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 24 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83
GI+A P ++M + V I G S ++G VF+L + EY A P V+F+T +HPN+D
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 84 -KLGRICLDILKD--KWSPALQIRTVLLRGEYFL 114
G+ C+D L + KW+ + ++LL + L
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVML 135
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 4 SNLPRRIIKETQRLLSEPAPGISASPS--EDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
+++ +R+ KE L ++P PG++ + ++++ + V + G + YEG F+L
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 62 EEYPMAAPKVRFLTKI--YHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
YP +P+V F + HP++ G ICL IL + WSPAL +++V L
Sbjct: 81 SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCL 129
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
EYP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVL 116
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLL 108
EYP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVL 114
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
+ N+N RI KE L P + N+R + V +G + Y V+K+++
Sbjct: 18 LGNANY--RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIF 75
Query: 61 PEEYPMAAPKVRFLTK-IYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
P+ YP+ P V FL K H ++ G ICL +L D ++P+L I ++L
Sbjct: 76 PDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLIL 124
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 1 MANSNLPRRIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSP 48
MA++ + RI+KE + +L + P GI S +P E ++ + +I GP+ +P
Sbjct: 3 MADTCM-SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61
Query: 49 YEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNI-DKLGRICLDILK-DKWSPALQI 103
YE F++ + +P YPM PK+ F+ I H N+ G ICL+ILK ++W+P +
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDL 119
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 1 MANSNLPRRIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSP 48
MA++ + RI+KE + +L + P GI S +P E ++ + +I GP+ +P
Sbjct: 3 MADTCM-SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61
Query: 49 YEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNI-DKLGRICLDILK-DKWSPALQI 103
YE F++ + +P YPM PK+ F+ I H N+ G ICL+ILK ++W+P +
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDL 119
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 1 MANSNLPRRIIKETQRLL---------SEPAPGI--SASP-SEDNMRYFNVMILGPTQSP 48
MA++ + RI+KE + +L + P GI S +P E ++ + +I GP+ +P
Sbjct: 3 MADTCM-SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61
Query: 49 YEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNI-DKLGRICLDILK-DKWSPALQI 103
YE F++ + +P YPM PK+ F+ I H N+ G ICL+ILK ++W+P +
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDL 119
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 30 SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH-----PNIDK 84
E+ + V+I GP +PY G F+ +++ P++YP + P V T H PN+
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 85 LGRICLDIL-------KDKWSP 99
G++CL IL ++KW+P
Sbjct: 165 DGKVCLSILNTWHGRPEEKWNP 186
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 8 RRIIKETQRLLSE----------PAPGISASPSEDNMRYFN--VMILGPTQSPY--EGGV 53
+RIIK+ + LL E +P +A S D +N + + P S Y G
Sbjct: 11 KRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNT 70
Query: 54 FKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
++L + ++YP P VRF+T +Y P + G IC ++ D W+P V+
Sbjct: 71 YQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 10 IIKETQRLLSEPAPGISASPSED-----------NMRYFNVMILGPTQSPYEGGVFKLEL 58
I+ + RLL E G + SE + ++ I G + +E ++ L +
Sbjct: 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC---LDILKDKWSPALQIRTVLL 108
F + YP + P V+F TKI +D GR+ L ILK+ W+ I T+L+
Sbjct: 79 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILI 130
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 10 IIKETQRLLSEPAPGISASPSED-----------NMRYFNVMILGPTQSPYEGGVFKLEL 58
I+ + RLL E G + SE + ++ I G + +E ++ L +
Sbjct: 23 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 82
Query: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC---LDILKDKWSPALQIRTVLL 108
F + YP + P V+F TKI +D GR+ L ILK+ W+ I T+L+
Sbjct: 83 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILI 134
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 27 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KL 85
A + M +N ILGP S +E ++ L + YP + PKV F++KI P ++
Sbjct: 32 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 91
Query: 86 GRICLD--ILKDKWSPALQIRTVLL 108
G + D L+D W A + T+LL
Sbjct: 92 GEVQTDFHTLRD-WKRAYTMETLLL 115
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 27 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KL 85
A + M +N ILGP S +E ++ L + YP + PKV F++KI P ++
Sbjct: 31 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 90
Query: 86 GRICLD--ILKDKWSPALQIRTVLL 108
G + D L+D W A + T+LL
Sbjct: 91 GEVQTDFHTLRD-WKRAYTMETLLL 114
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MILGP ++ YE ++ L++ +YP A P
Sbjct: 16 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPP 75
Query: 70 KVRFLTKIYHPNIDKLGRI----CLDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI ++ + + +L KW + I+ VL + S+
Sbjct: 76 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSK 126
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 19 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPP 78
Query: 70 KVRFLTKIYHPNIDKLGRIC----LDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI I+ + + +L KW + I+ VL + S+
Sbjct: 79 SVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSK 129
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 24 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPP 83
Query: 70 KVRFLTKIYHPNIDKLGRIC----LDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI I+ + + +L KW + I+ VL + S+
Sbjct: 84 SVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSK 134
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 13 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPP 72
Query: 70 KVRFLTKIYHPNIDKLGRIC----LDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI I+ + + +L KW + I+ VL + S+
Sbjct: 73 SVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSK 123
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 14 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPP 73
Query: 70 KVRFLTKIYHPNIDKLGRIC----LDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI I+ + + +L KW + I+ VL + S+
Sbjct: 74 SVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSK 124
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 34 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 93
Query: 70 KVRFLTKIYHPNIDKLGRI----CLDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI ++ + + +L KW + I+ VL + S+
Sbjct: 94 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSK 144
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 11 IKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
++E Q+ + + ED + + MI+GP ++ YE ++ L++ +YP A P
Sbjct: 44 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 103
Query: 70 KVRFLTKIYHPNIDKLGRI----CLDILKDKWSPALQIRTVLLRGEYFLFSR 117
VRF+TKI ++ + + +L KW + I+ VL + S+
Sbjct: 104 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSK 154
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 159 PGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 202
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 158 PGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 201
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 28.5 bits (62), Expect = 1.00, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I+GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIMGPLTTPVGGGIRSLNVALRQE 121
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP--KVRFLTKIYHP 80
P+E D +R + + I GP +P GG+ L + L +E + VR+ T + P
Sbjct: 76 PAETLDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSP 131
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ +L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRELNVALRQE 121
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 23 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 69
PG+ P+ +Y ++I P + ++GG+ + +++ EY A P
Sbjct: 154 PGLGVRPA---TQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACP 197
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 83 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 119
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRDLNVALRQE 121
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 29 PSE--DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
P+E D +R + V I GP +P GG+ L + L +E
Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGIRXLNVALRQE 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,946
Number of Sequences: 62578
Number of extensions: 134906
Number of successful extensions: 503
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 133
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)