Query 033385
Match_columns 120
No_of_seqs 129 out of 1073
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3E-49 6.6E-54 264.2 13.7 120 1-120 1-121 (153)
2 KOG0419 Ubiquitin-protein liga 100.0 7E-48 1.5E-52 247.2 11.0 119 1-120 1-119 (152)
3 KOG0417 Ubiquitin-protein liga 100.0 1E-47 2.3E-52 252.1 11.4 114 6-119 2-115 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 3.6E-44 7.9E-49 241.5 15.3 116 5-120 2-117 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.6E-43 3.6E-48 237.3 15.0 114 7-120 3-116 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 8.4E-42 1.8E-46 224.9 12.1 119 1-119 1-133 (171)
7 KOG0421 Ubiquitin-protein liga 100.0 7.5E-42 1.6E-46 222.5 9.3 117 3-119 27-143 (175)
8 KOG0418 Ubiquitin-protein liga 100.0 3E-41 6.6E-46 228.2 11.2 118 1-120 1-122 (200)
9 KOG0424 Ubiquitin-protein liga 100.0 3.2E-39 7E-44 209.9 11.7 119 1-120 1-126 (158)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 8.4E-39 1.8E-43 213.2 13.8 112 8-119 2-114 (141)
11 PF00179 UQ_con: Ubiquitin-con 100.0 3E-39 6.5E-44 215.0 11.6 111 9-119 1-113 (140)
12 KOG0426 Ubiquitin-protein liga 100.0 6.5E-39 1.4E-43 206.1 10.8 116 4-119 3-132 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.4E-37 7.5E-42 206.2 13.8 113 8-120 1-115 (145)
14 KOG0894 Ubiquitin-protein liga 100.0 4.4E-35 9.6E-40 202.0 12.2 116 1-120 1-121 (244)
15 KOG0422 Ubiquitin-protein liga 100.0 3E-35 6.5E-40 190.5 10.6 115 5-120 2-118 (153)
16 KOG0427 Ubiquitin conjugating 100.0 1.1E-34 2.4E-39 186.3 12.2 113 5-118 15-128 (161)
17 KOG0423 Ubiquitin-protein liga 100.0 2.4E-32 5.1E-37 183.0 5.1 115 5-119 10-124 (223)
18 KOG0420 Ubiquitin-protein liga 100.0 5.1E-31 1.1E-35 176.2 8.6 111 6-119 29-143 (184)
19 KOG0416 Ubiquitin-protein liga 100.0 1.3E-29 2.8E-34 169.3 9.1 112 6-120 4-117 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 6.5E-25 1.4E-29 154.5 9.7 110 4-116 10-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 4.7E-21 1E-25 155.9 6.5 114 6-119 852-974 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 2.7E-19 5.8E-24 124.4 10.5 111 7-118 21-135 (258)
23 KOG0895 Ubiquitin-conjugating 99.8 1.7E-18 3.6E-23 141.2 11.1 115 4-118 281-406 (1101)
24 KOG0896 Ubiquitin-conjugating 99.7 6.2E-16 1.3E-20 100.1 8.2 115 1-115 1-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 99.0 1.3E-09 2.9E-14 71.9 6.0 67 50-116 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 99.0 4.9E-10 1.1E-14 70.9 3.3 65 53-117 12-78 (122)
27 PF05743 UEV: UEV domain; Int 98.6 3.7E-07 8.1E-12 59.4 7.1 79 34-117 32-118 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 1E-07 2.3E-12 62.7 2.1 98 5-107 24-135 (161)
29 KOG2391 Vacuolar sorting prote 97.7 0.00023 5E-09 53.3 8.1 82 33-119 51-140 (365)
30 KOG3357 Uncharacterized conser 97.7 6.2E-05 1.4E-09 49.1 4.1 95 6-106 28-137 (167)
31 PF05773 RWD: RWD domain; Int 97.0 0.0036 7.7E-08 39.2 6.0 69 8-77 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.9 0.02 4.3E-07 37.3 8.9 93 23-116 12-121 (122)
33 smart00591 RWD domain in RING 96.6 0.025 5.5E-07 35.0 7.6 27 50-76 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 96.5 0.034 7.3E-07 37.9 8.6 62 55-116 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 93.5 0.11 2.5E-06 38.6 3.9 87 6-115 100-187 (291)
36 KOG0309 Conserved WD40 repeat- 92.8 0.83 1.8E-05 38.3 8.0 68 8-76 423-491 (1081)
37 KOG4018 Uncharacterized conser 88.7 2.2 4.8E-05 30.4 6.1 22 53-74 50-71 (215)
38 TIGR03737 PRTRC_B PRTRC system 80.5 2.7 5.9E-05 30.3 3.6 32 80-115 139-171 (228)
39 PF14460 Prok-E2_D: Prokaryoti 77.9 3.1 6.8E-05 28.5 3.2 19 75-93 90-111 (175)
40 PF06113 BRE: Brain and reprod 76.6 9.3 0.0002 29.1 5.6 67 34-112 53-122 (333)
41 smart00340 HALZ homeobox assoc 70.4 4.2 9.1E-05 21.4 1.8 14 7-20 21-34 (44)
42 cd00421 intradiol_dioxygenase 69.9 8.9 0.00019 25.4 3.8 24 51-74 65-89 (146)
43 cd03457 intradiol_dioxygenase_ 64.1 13 0.00028 25.9 3.8 24 51-74 86-109 (188)
44 cd03459 3,4-PCD Protocatechuat 60.5 17 0.00037 24.6 3.8 24 51-74 72-100 (158)
45 KOG4445 Uncharacterized conser 53.2 20 0.00044 27.1 3.4 25 52-76 45-69 (368)
46 PF06113 BRE: Brain and reprod 51.2 26 0.00057 26.7 3.8 28 51-79 305-332 (333)
47 PF00845 Gemini_BL1: Geminivir 49.9 34 0.00075 25.1 4.0 48 32-79 100-155 (276)
48 KOG0177 20S proteasome, regula 48.8 8.2 0.00018 27.1 0.7 30 85-114 135-164 (200)
49 PF03366 YEATS: YEATS family; 48.8 58 0.0013 19.6 5.1 43 35-79 2-44 (84)
50 TIGR02423 protocat_alph protoc 48.0 33 0.00071 24.1 3.7 24 51-74 96-124 (193)
51 cd03463 3,4-PCD_alpha Protocat 46.1 38 0.00082 23.6 3.7 23 52-74 93-120 (185)
52 KOG3285 Spindle assembly check 43.6 56 0.0012 22.9 4.1 39 5-43 119-157 (203)
53 PF04881 Adeno_GP19K: Adenovir 42.0 30 0.00065 22.8 2.5 29 30-58 43-72 (139)
54 PF12065 DUF3545: Protein of u 38.9 23 0.00049 20.1 1.4 12 7-18 36-47 (59)
55 PF00779 BTK: BTK motif; Inte 37.4 11 0.00024 18.6 -0.0 16 77-92 2-18 (32)
56 PF13950 Epimerase_Csub: UDP-g 37.2 36 0.00078 19.1 2.1 19 96-114 37-55 (62)
57 PRK11700 hypothetical protein; 36.7 1.5E+02 0.0032 20.8 6.6 71 33-109 87-184 (187)
58 PF14135 DUF4302: Domain of un 36.0 1.6E+02 0.0034 21.1 5.7 16 4-19 8-23 (235)
59 KOG0744 AAA+-type ATPase [Post 35.9 67 0.0014 25.0 3.9 72 31-118 170-249 (423)
60 COG3140 Uncharacterized protei 34.2 67 0.0015 17.9 2.8 25 1-25 28-52 (60)
61 PF11745 DUF3304: Protein of u 33.9 24 0.00052 22.5 1.1 19 85-103 50-68 (118)
62 PRK15486 hpaC 4-hydroxyphenyla 33.5 29 0.00064 23.7 1.6 68 10-94 6-76 (170)
63 cd05845 Ig2_L1-CAM_like Second 31.8 1.3E+02 0.0027 18.5 4.6 26 49-76 16-41 (95)
64 TIGR02439 catechol_proteo cate 31.5 82 0.0018 23.6 3.7 24 51-74 180-221 (285)
65 TIGR02296 HpaC 4-hydroxyphenyl 29.6 31 0.00068 23.0 1.2 29 66-94 36-67 (154)
66 cd03461 1,2-HQD Hydroxyquinol 29.5 93 0.002 23.2 3.7 24 51-74 172-213 (277)
67 cd03464 3,4-PCD_beta Protocate 28.9 98 0.0021 22.2 3.7 24 51-74 122-152 (220)
68 COG0544 Tig FKBP-type peptidyl 27.5 1.8E+02 0.0038 23.2 5.2 15 52-66 209-223 (441)
69 TIGR01239 galT_2 galactose-1-p 27.4 57 0.0012 26.2 2.4 26 49-83 356-386 (489)
70 TIGR02422 protocat_beta protoc 27.2 1.1E+02 0.0024 22.0 3.7 24 51-74 117-147 (220)
71 COG3866 PelB Pectate lyase [Ca 27.1 1.2E+02 0.0027 23.1 4.0 39 36-75 198-240 (345)
72 cd03460 1,2-CTD Catechol 1,2 d 27.1 1.1E+02 0.0024 22.9 3.7 24 51-74 176-217 (282)
73 TIGR02438 catachol_actin catec 27.0 1.1E+02 0.0024 22.8 3.8 24 51-74 184-225 (281)
74 PF14455 Metal_CEHH: Predicted 26.9 1.8E+02 0.004 19.8 4.4 64 9-76 9-76 (177)
75 PF09929 DUF2161: Uncharacteri 26.8 63 0.0014 20.9 2.2 20 5-24 27-46 (118)
76 KOG1047 Bifunctional leukotrie 26.5 70 0.0015 26.4 2.8 29 47-76 248-279 (613)
77 PF09458 H_lectin: H-type lect 25.8 1.1E+02 0.0023 17.2 2.9 22 53-75 2-23 (72)
78 KOG0662 Cyclin-dependent kinas 25.5 77 0.0017 22.6 2.6 53 66-118 167-223 (292)
79 smart00107 BTK Bruton's tyrosi 24.8 33 0.00071 17.3 0.5 15 77-91 7-22 (36)
80 PF14824 Sirohm_synth_M: Siroh 24.8 64 0.0014 15.6 1.5 14 4-17 16-29 (30)
81 PRK00396 rnpA ribonuclease P; 24.6 1E+02 0.0022 20.1 2.9 22 5-26 64-85 (130)
82 PF05709 Sipho_tail: Phage tai 23.7 2.6E+02 0.0055 19.4 5.3 57 6-64 53-112 (249)
83 TIGR02465 chlorocat_1_2 chloro 23.5 1.5E+02 0.0032 21.7 3.8 24 51-74 150-191 (246)
84 KOG1814 Predicted E3 ubiquitin 23.3 86 0.0019 24.8 2.7 22 54-75 76-98 (445)
85 TIGR03615 RutF pyrimidine util 23.3 50 0.0011 22.1 1.3 31 64-94 39-72 (156)
86 PRK05270 galactose-1-phosphate 23.1 77 0.0017 25.6 2.4 31 49-83 359-389 (493)
87 PF06305 DUF1049: Protein of u 23.0 74 0.0016 17.7 1.8 15 6-20 49-63 (68)
88 COG2819 Predicted hydrolase of 22.4 1.7E+02 0.0036 21.7 3.9 30 47-76 16-47 (264)
89 PHA02131 hypothetical protein 22.0 39 0.00085 19.0 0.5 18 76-93 2-21 (70)
90 COG4468 GalT Galactose-1-phosp 21.6 82 0.0018 25.0 2.3 24 50-82 362-390 (503)
91 COG1853 Conserved protein/doma 21.5 71 0.0015 21.6 1.8 29 66-94 44-75 (176)
92 PF14532 Sigma54_activ_2: Sigm 21.4 1.5E+02 0.0033 18.8 3.3 19 2-20 2-20 (138)
93 PF15572 Imm26: Immunity prote 21.0 1.2E+02 0.0025 19.0 2.5 26 44-74 7-32 (96)
94 PF11239 DUF3040: Protein of u 20.6 1E+02 0.0023 18.1 2.2 27 1-27 1-27 (82)
95 KOG4274 Positive cofactor 2 (P 20.5 2E+02 0.0042 24.1 4.2 49 9-68 623-675 (742)
96 COG1225 Bcp Peroxiredoxin [Pos 20.5 1.5E+02 0.0033 20.1 3.2 30 82-113 126-155 (157)
97 COG3876 Uncharacterized protei 20.5 54 0.0012 25.2 1.1 45 67-111 295-345 (409)
98 PF04314 DUF461: Protein of un 20.2 1.2E+02 0.0026 18.9 2.5 27 36-62 77-103 (110)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-49 Score=264.18 Aligned_cols=120 Identities=48% Similarity=0.943 Sum_probs=116.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCC-CCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~h 79 (120)
|++..+.+||++|++++++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67777899999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 80 PNIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 80 Pnv~~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
|||+.+|+||+++|.++|+|+++|++||++|+++|.+||++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~ 121 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPD 121 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999974
No 2
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-48 Score=247.21 Aligned_cols=119 Identities=41% Similarity=0.835 Sum_probs=114.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccc
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hP 80 (120)
|++. +.|||++|+++++++++.|+++.|.++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|||
T Consensus 1 Mstp-ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTP-ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCch-HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 5564 459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 81 NIDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 81 nv~~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
|||.+|.+|+|+|+..|+|.|+|.+||.+||++|.+|++.
T Consensus 80 Nvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~ 119 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPN 119 (152)
T ss_pred CcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999974
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-47 Score=252.11 Aligned_cols=114 Identities=61% Similarity=1.000 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCC
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~ 85 (120)
+.+||.+|++++++++++||.+.+.++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEecccCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 86 GRICLDILKDKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 86 G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
|+||+|+|.+.|+|+.++++||++|+++|.+|||
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~Pnp 115 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNP 115 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999997
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.6e-44 Score=241.49 Aligned_cols=116 Identities=65% Similarity=1.104 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccC
Q 033385 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 84 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~ 84 (120)
+++|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 85 LGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 85 ~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
+|.||+++|.++|+|++|+++||++|+++|.+|++.
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~ 117 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPD 117 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999874
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.6e-43 Score=237.26 Aligned_cols=114 Identities=48% Similarity=0.899 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCCC
Q 033385 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (120)
Q Consensus 7 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~G 86 (120)
.+||++|++++++++.+|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEecccCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 87 RICLDILKDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 87 ~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
.||+++|.++|+|++++++||.+|+++|.+|++.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~ 116 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPD 116 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999863
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-42 Score=224.88 Aligned_cols=119 Identities=33% Similarity=0.687 Sum_probs=112.7
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEec-CCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~h 79 (120)
|++.++..-|+++|++|++++.+|+.+... +.|+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.+++||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 778888889999999999999999999875 5699999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEecccCC-------------CCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 80 Pnv~~~G~vcl~~l~-------------~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
||||++|.+|+++|. +.|.|.+|+++||++|.++|.+||-
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~ 133 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPND 133 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCC
Confidence 999999999999993 4799999999999999999999983
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-42 Score=222.46 Aligned_cols=117 Identities=42% Similarity=0.727 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccc
Q 033385 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (120)
Q Consensus 3 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv 82 (120)
.++..|||++|+..|+-...+||++.|+++|++.|.++|.||.+|+|+|..|++.+.||.+||++||+|+|.|++|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 83 DKLGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 83 ~~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
+..|.||+|+|.+.|+..|+|++||++||++|-+||-
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn 143 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNN 143 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999973
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-41 Score=228.17 Aligned_cols=118 Identities=43% Similarity=0.845 Sum_probs=113.4
Q ss_pred CCCCchHHHHHHHHHHHhhCC---CCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccC
Q 033385 1 MANSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i 77 (120)
|++ +.+||++|.+++.+++ ..|+.++..++|+.+..+.|.||++||||||.|.++|.+|++||++||+|+|.|+|
T Consensus 1 m~~--~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN--AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc--HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 666 7799999999999988 58999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-CCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 78 YHPNIDK-LGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 78 ~hPnv~~-~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
|||||++ +|.||+|+|.+.|++++|++++|++||++|.+|+|+
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~ 122 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPK 122 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCC
Confidence 9999997 899999999999999999999999999999999985
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=209.93 Aligned_cols=119 Identities=31% Similarity=0.635 Sum_probs=110.2
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecC-----CCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEec
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t 75 (120)
|++ .+..||++|-+.+.++.+-|+++.|.. .|++.|++.|.|+++|+||||.|.+++.||++||.+||+++|.+
T Consensus 1 ~s~-~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MSG-IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred Ccc-hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 444 446899999999999999999998842 37899999999999999999999999999999999999999999
Q ss_pred cCccccccCCCcEecccCCCC--CCccCcHHHHHHHHHHhhcCCCCC
Q 033385 76 KIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 76 ~i~hPnv~~~G~vcl~~l~~~--W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
+.||||||.+|.|||++|.+. |+|++|+.+||.+||.||.+||.+
T Consensus 80 pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~ 126 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNIT 126 (158)
T ss_pred CCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999754 999999999999999999999974
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=8.4e-39 Score=213.15 Aligned_cols=112 Identities=51% Similarity=0.939 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCCCc
Q 033385 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (120)
Q Consensus 8 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~G~ 87 (120)
|||++|++++++++..|+++.+.++|+++|+++|.|+++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCC-CCccCcHHHHHHHHHHhhcCCCC
Q 033385 88 ICLDILKDK-WSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 88 vcl~~l~~~-W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
+|++++... |+|++++++||.+|+++|.+|++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~ 114 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNP 114 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCC
Confidence 999999766 99999999999999999998875
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3e-39 Score=215.03 Aligned_cols=111 Identities=50% Similarity=0.966 Sum_probs=102.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCC-CCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCCCc
Q 033385 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (120)
Q Consensus 9 RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~G~ 87 (120)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999876 9999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCC-CCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 88 ICLDILK-DKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 88 vcl~~l~-~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
+|+++|. +.|+|++++.+||.+|+++|.+|++
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~ 113 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNP 113 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCT
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCC
Confidence 9999997 4599999999999999999998875
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-39 Score=206.13 Aligned_cols=116 Identities=36% Similarity=0.740 Sum_probs=110.2
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEe-cCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccc
Q 033385 4 SNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (120)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv 82 (120)
..++|||++||++|-.++++||.+.| +++|.++|.+.|.||++|+|+||.|..++.||.+||.+||+++|.-.+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 35779999999999999999999988 57899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEecccCC-------------CCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 83 DKLGRICLDILK-------------DKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 83 ~~~G~vcl~~l~-------------~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
|++|+||+++|. +.|+|.++|+.||+++.++|.+||-
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPND 132 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCc
Confidence 999999999993 5799999999999999999999984
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.4e-37 Score=206.23 Aligned_cols=113 Identities=50% Similarity=0.962 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCC-CCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCCC
Q 033385 8 RRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (120)
Q Consensus 8 ~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~G 86 (120)
+||++|++++++++.+|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||.+||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEecccCC-CCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 87 RICLDILK-DKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 87 ~vcl~~l~-~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
.+|++++. ++|+|++++++||.+|+++|.+|++.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~ 115 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPD 115 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 99999998 89999999999999999999998763
No 14
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=201.98 Aligned_cols=116 Identities=33% Similarity=0.647 Sum_probs=109.4
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccc
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hP 80 (120)
||+.++.|||+|||+.|+++|.+++.++|.++|+.+||.+|.||++|||+||.|+..+.||.+||++||.|++.| |
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----P 76 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----P 76 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----C
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred c--ccCCCcEecccC---CCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 81 N--IDKLGRICLDIL---KDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 81 n--v~~~G~vcl~~l---~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
| +-.+-++||++. .+.|+|+++|++||.+|.++|.+..||
T Consensus 77 NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pT 121 (244)
T KOG0894|consen 77 NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPT 121 (244)
T ss_pred CCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCc
Confidence 4 224569999988 499999999999999999999999886
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=190.52 Aligned_cols=115 Identities=34% Similarity=0.652 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHhhCCCCCeE-EEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcccccc
Q 033385 5 NLPRRIIKETQRLLSEPAPGIS-ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~ 83 (120)
.+.|||++|+.+|++++...+. ++.+++|++.|++.|. |++.||..|.|+++|.||.+||++||+|+|.|+||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3569999999999999877664 5678899999999999 8999999999999999999999999999999999999999
Q ss_pred CCCcEecccC-CCCCCccCcHHHHHHHHHHhhcCCCCC
Q 033385 84 KLGRICLDIL-KDKWSPALQIRTVLLRGEYFLFSRGRT 120 (120)
Q Consensus 84 ~~G~vcl~~l-~~~W~p~~~v~~vl~~i~~~l~~~~~~ 120 (120)
+.|.+|+.++ .++|.|++.+.+||++|.+++.+|+|.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe 118 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPE 118 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCcc
Confidence 9999999999 599999999999999999999999974
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=186.31 Aligned_cols=113 Identities=33% Similarity=0.594 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccC-cccccc
Q 033385 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNID 83 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i-~hPnv~ 83 (120)
.+.+||+||+.+++.+++.|+... ..+|+.+|.+.+.|.+||.|+|..|++.+.||+.||++.|+|.|..++ .|||||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 367899999999999999999887 678999999999999999999999999999999999999999999885 799999
Q ss_pred CCCcEecccCCCCCCccCcHHHHHHHHHHhhcCCC
Q 033385 84 KLGRICLDILKDKWSPALQIRTVLLRGEYFLFSRG 118 (120)
Q Consensus 84 ~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~ 118 (120)
++|-|||++|.|.|+|+++|.+|.++|.++|++-.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~ 128 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK 128 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999998754
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-32 Score=183.03 Aligned_cols=115 Identities=37% Similarity=0.713 Sum_probs=112.3
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccC
Q 033385 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 84 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~ 84 (120)
..+|.|.+|++.+...++.||.+.+.++|....++.|.||.+|||++|.|++.+.+..+||.+||+-+|.|+||||||..
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 85 LGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 85 ~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
+|.||+..|..+|+|+.+++.||..|+.+|.+|+|
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnP 124 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNP 124 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCCh
Confidence 99999999999999999999999999999999997
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-31 Score=176.23 Aligned_cols=111 Identities=34% Similarity=0.723 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEE--ecCCCCc--EEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcccc
Q 033385 6 LPRRIIKETQRLLSEPAPGISAS--PSEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPN 81 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~--~~~~~~~--~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPn 81 (120)
++-||.+|..++ +.+++++.. ...+++. +++++|. |+++.|.||.|+|.+.+|+.||++||+|+|.|++||||
T Consensus 29 a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 444666666666 556666632 1234443 5999999 99999999999999999999999999999999999999
Q ss_pred ccCCCcEecccCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 82 IDKLGRICLDILKDKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 82 v~~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
|+.+|.|||++|+++|+|+.++.+|+.+|+.+|.+|++
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~ 143 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNP 143 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999975
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=169.27 Aligned_cols=112 Identities=36% Similarity=0.697 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccC-
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK- 84 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~- 84 (120)
..||+-.|...|.. .+..+...++++.+++|.+.||+++||+||.++++|.+|++||++.|.|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 34799999888875 45578888999999999999999999999999999999999999999999999999999996
Q ss_pred CCcEecccCCCCCCccCcHHHHHH-HHHHhhcCCCCC
Q 033385 85 LGRICLDILKDKWSPALQIRTVLL-RGEYFLFSRGRT 120 (120)
Q Consensus 85 ~G~vcl~~l~~~W~p~~~v~~vl~-~i~~~l~~~~~~ 120 (120)
+|.|||+.+++.|+|.+.+..|+. -|-.||.-|||.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~ 117 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPS 117 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCC
Confidence 899999999999999999999985 567888888874
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.5e-25 Score=154.50 Aligned_cols=110 Identities=33% Similarity=0.612 Sum_probs=97.1
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcccccc
Q 033385 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (120)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~ 83 (120)
.++.|||++|.++++ +|...+.+.+.++|+++|+++|.||.+|-|+||.|+.+|.||.+||++||.+...|+--. +-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR--FE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR--FE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc--ee
Confidence 457899999999997 777777789999999999999999999999999999999999999999999999994222 22
Q ss_pred CCCcEecccCC---CCCCccCcHHHHHHHHHHhhcC
Q 033385 84 KLGRICLDILK---DKWSPALQIRTVLLRGEYFLFS 116 (120)
Q Consensus 84 ~~G~vcl~~l~---~~W~p~~~v~~vl~~i~~~l~~ 116 (120)
.+-+|||++.. +.|.|++++++.|++|..+|-+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 35689999984 8999999999999999988753
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.7e-21 Score=155.87 Aligned_cols=114 Identities=25% Similarity=0.561 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEecc--Ccccccc
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNID 83 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~--i~hPnv~ 83 (120)
..+..+.|++-+..+.+.|+.++..++.+....+.|.|+.+|||.+|.|.|++.||++||.+||.|+..+. +++||.|
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly 931 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY 931 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc
Confidence 44556677788888889999999999999999999999999999999999999999999999999999987 6899999
Q ss_pred CCCcEecccCC-------CCCCccCcHHHHHHHHHHhhcCCCC
Q 033385 84 KLGRICLDILK-------DKWSPALQIRTVLLRGEYFLFSRGR 119 (120)
Q Consensus 84 ~~G~vcl~~l~-------~~W~p~~~v~~vl~~i~~~l~~~~~ 119 (120)
.+|+||+++|+ +.|+|+-++.+||.+||.|+.+.+|
T Consensus 932 ~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 932 EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 99999999995 6799988999999999999887665
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.7e-19 Score=124.38 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCC--CCCeEEEeccCccccccC
Q 033385 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM--AAPKVRFLTKIYHPNIDK 84 (120)
Q Consensus 7 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~--~pP~v~f~t~i~hPnv~~ 84 (120)
...|+.|+..+.+++.+||++.|+-+|-+.|.++|++ ..++|.||.|+|+|.+|++||. +-|+|.|.+.++||+|.+
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 4578999999999999999999999999999999995 5678999999999999999995 679999999999999997
Q ss_pred -CCcEecccCCCCCCccC-cHHHHHHHHHHhhcCCC
Q 033385 85 -LGRICLDILKDKWSPAL-QIRTVLLRGEYFLFSRG 118 (120)
Q Consensus 85 -~G~vcl~~l~~~W~p~~-~v~~vl~~i~~~l~~~~ 118 (120)
++.+|+.-....|+... ++.+||..+|..|.+|+
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd 135 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPD 135 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcc
Confidence 89999987766698877 69999999999999886
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-18 Score=141.21 Aligned_cols=115 Identities=30% Similarity=0.660 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEecc---Cccc
Q 033385 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK---IYHP 80 (120)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~---i~hP 80 (120)
.+..+|+++|++.+.++.++|+.+.+.+..+....+.|.|+.+|||++|.|.|.|.||..||..||.|++.+. ++.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred cccCCCcEecccCC-------CCCCcc-CcHHHHHHHHHHhhcCCC
Q 033385 81 NIDKLGRICLDILK-------DKWSPA-LQIRTVLLRGEYFLFSRG 118 (120)
Q Consensus 81 nv~~~G~vcl~~l~-------~~W~p~-~~v~~vl~~i~~~l~~~~ 118 (120)
|.|.+|+||+++|. +.|+|. .++.++|.+||.++.+..
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~ 406 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEE 406 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccC
Confidence 99999999999983 679999 689999999999988763
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.2e-16 Score=100.13 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=93.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeE-EEecC-CC--CcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEecc
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGIS-ASPSE-DN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~-~~~~~-~~--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 76 (120)
|+-.++.-||.+|+.+=++-..++.. ....+ +| +..|..+|.||+.|+||+..|.+.|....+||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 45556667999999988766555443 33332 33 5689999999999999999999999999999999999999999
Q ss_pred CccccccC-CCcEecccC--CCCCCccCcHHHHHHHHHHhhc
Q 033385 77 IYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLRGEYFLF 115 (120)
Q Consensus 77 i~hPnv~~-~G~vcl~~l--~~~W~p~~~v~~vl~~i~~~l~ 115 (120)
+--+.|+. +|.+.-..+ -.+|.-.|+++.+|.++...+.
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 99888886 677765333 2699999999999999986554
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.98 E-value=1.3e-09 Score=71.88 Aligned_cols=67 Identities=30% Similarity=0.648 Sum_probs=60.9
Q ss_pred CCCeEEEEEeCCCCCCCCCCeEEEeccC---ccccccCCCcEec---ccCCCCCCccCcHHHHHHHHHHhhcC
Q 033385 50 EGGVFKLELFLPEEYPMAAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLRGEYFLFS 116 (120)
Q Consensus 50 ~g~~f~~~i~fp~~YP~~pP~v~f~t~i---~hPnv~~~G~vcl---~~l~~~W~p~~~v~~vl~~i~~~l~~ 116 (120)
.|+.+.+.|.||+.||..||.|....+. +-|||+.+|.+|+ +..-+.|.|...+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999998664 6899999999999 77789999999999999999988873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.9e-10 Score=70.94 Aligned_cols=65 Identities=22% Similarity=0.434 Sum_probs=53.2
Q ss_pred eEEEEEeCCCCCCCCCCeEEEeccCcccc-ccCCCcEecccC-CCCCCccCcHHHHHHHHHHhhcCC
Q 033385 53 VFKLELFLPEEYPMAAPKVRFLTKIYHPN-IDKLGRICLDIL-KDKWSPALQIRTVLLRGEYFLFSR 117 (120)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~t~i~hPn-v~~~G~vcl~~l-~~~W~p~~~v~~vl~~i~~~l~~~ 117 (120)
...+.+.|+++||+.||.++...|.-.-. |-.+|.||+.+| .++|+.+|+|+.++++|...+...
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG 78 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKG 78 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhcc
Confidence 35678899999999999999888432221 335799999999 589999999999999999887654
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.56 E-value=3.7e-07 Score=59.37 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=54.5
Q ss_pred CcEEEEEEeCCCCCCCCCCeE--EEEEeCCCCCCCCCCeEEEeccC-----ccccccCCCcEecccCCCCCCc-cCcHHH
Q 033385 34 MRYFNVMILGPTQSPYEGGVF--KLELFLPEEYPMAAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIRT 105 (120)
Q Consensus 34 ~~~w~~~i~gp~~t~y~g~~f--~~~i~fp~~YP~~pP~v~f~t~i-----~hPnv~~~G~vcl~~l~~~W~p-~~~v~~ 105 (120)
+....++|. -.|+|..| -+.|-+|.+||.+||.+...-.. -+.+|+.+|++.+..|. +|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 444555554 24778777 57788999999999999886432 24489999999988884 7877 778999
Q ss_pred HHHHHHHhhcCC
Q 033385 106 VLLRGEYFLFSR 117 (120)
Q Consensus 106 vl~~i~~~l~~~ 117 (120)
++..++..|.+.
T Consensus 107 lv~~l~~~F~~~ 118 (121)
T PF05743_consen 107 LVQELQAVFSEE 118 (121)
T ss_dssp HHHHHHHCCCHS
T ss_pred HHHHHHHHHhHc
Confidence 999998887654
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.44 E-value=1e-07 Score=62.74 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHhhC-------CCCCeEEEecCCCCcEEEEEEeCCCCCCCCC--CeEEEEEeCCCCCCCCCCeEEEec
Q 033385 5 NLPRRIIKETQRLLSE-------PAPGISASPSEDNMRYFNVMILGPTQSPYEG--GVFKLELFLPEEYPMAAPKVRFLT 75 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~-------~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g--~~f~~~i~fp~~YP~~pP~v~f~t 75 (120)
....||.+||+.|-+. ....+.++ ++.+-+.|.+.-.- .|+- -.|.+++.+|..||..||.+..-.
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe 98 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPE 98 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence 3567999999997641 22344444 33344555443320 1111 236677788999999999998752
Q ss_pred cC-ccccccCCCcEecccCC----CCCCccCcHHHHH
Q 033385 76 KI-YHPNIDKLGRICLDILK----DKWSPALQIRTVL 107 (120)
Q Consensus 76 ~i-~hPnv~~~G~vcl~~l~----~~W~p~~~v~~vl 107 (120)
-- --...|.+|+||++... ..=.|.+++.+.|
T Consensus 99 LdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 99 LDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred cCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 11 11356779999999774 3346777877765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00023 Score=53.30 Aligned_cols=82 Identities=18% Similarity=0.348 Sum_probs=62.2
Q ss_pred CCcEEEEEEeCCCCCCCCCCeEE--EEEeCCCCCCCCCCeEEEecc-----CccccccCCCcEecccCCCCCCc-cCcHH
Q 033385 33 NMRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDILKDKWSP-ALQIR 104 (120)
Q Consensus 33 ~~~~w~~~i~gp~~t~y~g~~f~--~~i~fp~~YP~~pP~v~f~t~-----i~hPnv~~~G~vcl~~l~~~W~p-~~~v~ 104 (120)
+++...++|. .+|.|.+|. +.|-+.+.||..||.+..... -.|-||+.+|+|.|..|. +|.+ +.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 3454445553 567787765 667789999999999976522 138899999999999996 7865 55799
Q ss_pred HHHHHHHHhhcCCCC
Q 033385 105 TVLLRGEYFLFSRGR 119 (120)
Q Consensus 105 ~vl~~i~~~l~~~~~ 119 (120)
.++..+.+.|.++.|
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999888888887765
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=6.2e-05 Score=49.10 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCe----------EEEEEeCCCCCCCCCCeEEEec
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGV----------FKLELFLPEEYPMAAPKVRFLT 75 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~----------f~~~i~fp~~YP~~pP~v~f~t 75 (120)
...||.+||+.|... ++-..++-..|.-.-..+.+|-|-|.+ |.+++.+|..||..+|.+....
T Consensus 28 wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpe 101 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPE 101 (167)
T ss_pred HHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccc
Confidence 457999999998641 222233333444333457777777643 5566778999999999987642
Q ss_pred cCc-cccccCCCcEecccC-CCCC---CccCcHHHH
Q 033385 76 KIY-HPNIDKLGRICLDIL-KDKW---SPALQIRTV 106 (120)
Q Consensus 76 ~i~-hPnv~~~G~vcl~~l-~~~W---~p~~~v~~v 106 (120)
--- .-..|.+|+||+.-. ..-| .|..++...
T Consensus 102 ldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 102 LDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred cCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 110 123567899998754 3345 455565554
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.97 E-value=0.0036 Score=39.22 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeC--CCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccC
Q 033385 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (120)
Q Consensus 8 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i 77 (120)
.+...|+..|+.--...+ ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888875333232 22334445566666631 2333344578999999999999999999988654
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.89 E-value=0.02 Score=37.28 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=61.0
Q ss_pred CCeEEEecCCCCcEEEEEEeC--CCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCc-------ccccc-----CCCcE
Q 033385 23 PGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY-------HPNID-----KLGRI 88 (120)
Q Consensus 23 ~~~~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~-------hPnv~-----~~G~v 88 (120)
.|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|-..+..|-. .|+-. -.|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 46666665555556655 665 56677999999999999999999988666665422 12100 02221
Q ss_pred e--cccCCCCCCccC-cHHHHHHHHHHhhcC
Q 033385 89 C--LDILKDKWSPAL-QIRTVLLRGEYFLFS 116 (120)
Q Consensus 89 c--l~~l~~~W~p~~-~v~~vl~~i~~~l~~ 116 (120)
- .+--...|+|.. +|.+.|..|...|..
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 1 111135699988 699999988887753
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.57 E-value=0.025 Score=35.00 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCeEEEecc
Q 033385 50 EGGVFKLELFLPEEYPMAAPKVRFLTK 76 (120)
Q Consensus 50 ~g~~f~~~i~fp~~YP~~pP~v~f~t~ 76 (120)
....+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999998764
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.55 E-value=0.034 Score=37.95 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=50.3
Q ss_pred EEEEeCCCCCCCCCCeEEEeccCc---cccccCC-----CcEecccCC-CCCCccCcHHHHHHHHHHhhcC
Q 033385 55 KLELFLPEEYPMAAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLRGEYFLFS 116 (120)
Q Consensus 55 ~~~i~fp~~YP~~pP~v~f~t~i~---hPnv~~~-----G~vcl~~l~-~~W~p~~~v~~vl~~i~~~l~~ 116 (120)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+---. ..|.+..+++.+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 367899999999999887776643 5888765 689986553 6899999999999999988764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.51 E-value=0.11 Score=38.60 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCC
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~ 85 (120)
.-++|.+|+.++..+.. +.+. .++++...++.+. -+.....++|.++.+||.++|.+...-++
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 34578888888875433 2221 3667888888887 22366889999999999999965332211
Q ss_pred CcEecccCCCCCCc-cCcHHHHHHHHHHhhc
Q 033385 86 GRICLDILKDKWSP-ALQIRTVLLRGEYFLF 115 (120)
Q Consensus 86 G~vcl~~l~~~W~p-~~~v~~vl~~i~~~l~ 115 (120)
.+...|.+ ..++.+++.+.+..|.
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHHHHHH
Confidence 11135888 6688888887776654
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.76 E-value=0.83 Score=38.32 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCC-CCCeEEEecc
Q 033385 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLTK 76 (120)
Q Consensus 8 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~-~pP~v~f~t~ 76 (120)
.-|.+|+..+-. ..+++.++-.+..-..-.+.+.||-.-.-.-...++.|.||.+||. .+|.++|..+
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 456667666642 3345555544444456677777754433222446899999999999 5789999854
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.72 E-value=2.2 Score=30.38 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCCCCCCeEEEe
Q 033385 53 VFKLELFLPEEYPMAAPKVRFL 74 (120)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~ 74 (120)
.+.+.+.++.+||.++|.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999444
No 38
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=80.47 E-value=2.7 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=20.3
Q ss_pred ccccCCCcEecccCCCCCCccC-cHHHHHHHHHHhhc
Q 033385 80 PNIDKLGRICLDILKDKWSPAL-QIRTVLLRGEYFLF 115 (120)
Q Consensus 80 Pnv~~~G~vcl~~l~~~W~p~~-~v~~vl~~i~~~l~ 115 (120)
+||+.+|+||+.-.. .|.. ++.+ +......|+
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHh
Confidence 399999999998653 4443 4554 555554443
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=77.91 E-value=3.1 Score=28.54 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=14.5
Q ss_pred ccCcc---ccccCCCcEecccC
Q 033385 75 TKIYH---PNIDKLGRICLDIL 93 (120)
Q Consensus 75 t~i~h---Pnv~~~G~vcl~~l 93 (120)
|+.|| +||+.+|+||+.-.
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCC
Confidence 44555 49999999999864
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=76.62 E-value=9.3 Score=29.12 Aligned_cols=67 Identities=22% Similarity=0.465 Sum_probs=46.5
Q ss_pred CcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe-ccCccccccCCCcEecccCCCCCCccC--cHHHHHHHH
Q 033385 34 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPAL--QIRTVLLRG 110 (120)
Q Consensus 34 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~-t~i~hPnv~~~G~vcl~~l~~~W~p~~--~v~~vl~~i 110 (120)
...+.+.| ||.|...+-+|.|...||..||-+.|. ..-|+|-.. . +..| .+|++.- .+..++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 44666666 599999999999999999999999996 434777321 1 1222 4797765 355565555
Q ss_pred HH
Q 033385 111 EY 112 (120)
Q Consensus 111 ~~ 112 (120)
..
T Consensus 121 ~~ 122 (333)
T PF06113_consen 121 RQ 122 (333)
T ss_pred HH
Confidence 44
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.43 E-value=4.2 Score=21.42 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhC
Q 033385 7 PRRIIKETQRLLSE 20 (120)
Q Consensus 7 ~~RL~~E~~~l~~~ 20 (120)
.|||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 47999999999854
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=69.92 E-value=8.9 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCCCCC-CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP-MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP-~~pP~v~f~ 74 (120)
.|.|.|.-.+|-.|| ..||.|+|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999996
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=64.13 E-value=13 Score=25.94 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCCCCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYPMAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP~~pP~v~f~ 74 (120)
.|.|.|.=.+|--||..+|.|+|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999997
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=60.53 E-value=17 Score=24.59 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCC-----CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP-----MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP-----~~pP~v~f~ 74 (120)
.|.|.|.=.+|--|| ..||.|+|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 899999996
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=53.24 E-value=20 Score=27.11 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeEEEEEeCCCCCCCCCCeEEEecc
Q 033385 52 GVFKLELFLPEEYPMAAPKVRFLTK 76 (120)
Q Consensus 52 ~~f~~~i~fp~~YP~~pP~v~f~t~ 76 (120)
-.+.+.+..+..||.+.|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4578899999999999999999876
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=51.20 E-value=26 Score=26.73 Aligned_cols=28 Identities=25% Similarity=0.613 Sum_probs=23.1
Q ss_pred CCeEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033385 51 GGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (120)
Q Consensus 51 g~~f~~~i~fp~~YP~~pP~v~f~t~i~h 79 (120)
+-.|-+.|.+|..||...|.++|++ ++|
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 4457788999999999999999985 444
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=49.93 E-value=34 Score=25.09 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCcEEEEEEeCCCCCCCCC---CeEEEEEeCC-----CCCCCCCCeEEEeccCcc
Q 033385 32 DNMRYFNVMILGPTQSPYEG---GVFKLELFLP-----EEYPMAAPKVRFLTKIYH 79 (120)
Q Consensus 32 ~~~~~w~~~i~gp~~t~y~g---~~f~~~i~fp-----~~YP~~pP~v~f~t~i~h 79 (120)
.|..-|.+.....+.....| ..|+..++++ .+-|+.||+|+..++-|.
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 34556777777433333333 3466666665 788999999999988553
No 48
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.85 E-value=8.2 Score=27.09 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCcEecccCCCCCCccCcHHHHHHHHHHhh
Q 033385 85 LGRICLDILKDKWSPALQIRTVLLRGEYFL 114 (120)
Q Consensus 85 ~G~vcl~~l~~~W~p~~~v~~vl~~i~~~l 114 (120)
.+..|++++..-|+|.+|.+.-+.-++..+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 467999999999999999988766555443
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=48.80 E-value=58 Score=19.56 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=28.6
Q ss_pred cEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033385 35 RYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (120)
Q Consensus 35 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~h 79 (120)
..|.+-+.|+.+.....-.=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999877764455566788888899885 77666666443
No 50
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=47.99 E-value=33 Score=24.05 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCCCCC-----CCCeEEEe
Q 033385 51 GGVFKLELFLPEEYPM-----AAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP~-----~pP~v~f~ 74 (120)
.|.|.|.=.+|-.||. .||.|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 88888886
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.05 E-value=38 Score=23.59 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.0
Q ss_pred CeEEEEEeCCCCCCC-----CCCeEEEe
Q 033385 52 GVFKLELFLPEEYPM-----AAPKVRFL 74 (120)
Q Consensus 52 ~~f~~~i~fp~~YP~-----~pP~v~f~ 74 (120)
|.|.|.=.+|--||. .||.|+|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 88888875
No 52
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.62 E-value=56 Score=22.89 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeC
Q 033385 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILG 43 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g 43 (120)
...+|+++|++.+.+.--..++.-|.-+..-.+.+.+.-
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyT 157 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYT 157 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEe
Confidence 356899999999999888888877766666677777764
No 53
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=41.97 E-value=30 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=19.8
Q ss_pred cCCCCcEEEEEEeCCCCCCCCC-CeEEEEE
Q 033385 30 SEDNMRYFNVMILGPTQSPYEG-GVFKLEL 58 (120)
Q Consensus 30 ~~~~~~~w~~~i~gp~~t~y~g-~~f~~~i 58 (120)
.+.|...|.|++.|++|++... ..|-+.+
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~F 72 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKF 72 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchhee
Confidence 4567778899999999887753 3433333
No 54
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=38.88 E-value=23 Score=20.07 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHh
Q 033385 7 PRRIIKETQRLL 18 (120)
Q Consensus 7 ~~RL~~E~~~l~ 18 (120)
.+||++|++++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 458999998874
No 55
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=37.37 E-value=11 Score=18.56 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=9.1
Q ss_pred CccccccCCCc-Eeccc
Q 033385 77 IYHPNIDKLGR-ICLDI 92 (120)
Q Consensus 77 i~hPnv~~~G~-vcl~~ 92 (120)
.|||.++.+|+ .|-..
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999998775 55443
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=37.19 E-value=36 Score=19.14 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=12.3
Q ss_pred CCCccCcHHHHHHHHHHhh
Q 033385 96 KWSPALQIRTVLLRGEYFL 114 (120)
Q Consensus 96 ~W~p~~~v~~vl~~i~~~l 114 (120)
+|.|.+++++++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998776643
No 57
>PRK11700 hypothetical protein; Provisional
Probab=36.70 E-value=1.5e+02 Score=20.82 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=42.8
Q ss_pred CCcEEEEEEe---CCCCCCC-CCCeEEEEEeCC--------------CCCCCCCCeEEEe--cc------Ccccccc-CC
Q 033385 33 NMRYFNVMIL---GPTQSPY-EGGVFKLELFLP--------------EEYPMAAPKVRFL--TK------IYHPNID-KL 85 (120)
Q Consensus 33 ~~~~w~~~i~---gp~~t~y-~g~~f~~~i~fp--------------~~YP~~pP~v~f~--t~------i~hPnv~-~~ 85 (120)
....|.+.+. -|.+.-| ..|.=|+++.+| .+.+..++-|++. +| ..+|-|. ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 3455655443 3544444 346678888877 3345555545444 43 3455555 48
Q ss_pred CcEecccCCCCCCccCcHHHHHHH
Q 033385 86 GRICLDILKDKWSPALQIRTVLLR 109 (120)
Q Consensus 86 G~vcl~~l~~~W~p~~~v~~vl~~ 109 (120)
|.+|+.+-. +++..|+.+
T Consensus 167 ~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred CCEEEEEcC------ccHHHHHHh
Confidence 999999875 778777654
No 58
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=36.02 E-value=1.6e+02 Score=21.08 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHhh
Q 033385 4 SNLPRRIIKETQRLLS 19 (120)
Q Consensus 4 ~~~~~RL~~E~~~l~~ 19 (120)
.+...||.+.++++++
T Consensus 8 ~s~~eR~~e~~~~~k~ 23 (235)
T PF14135_consen 8 KSPAERINEALAEYKK 23 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3456788877777664
No 59
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.89 E-value=67 Score=25.01 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=44.9
Q ss_pred CCCCcEEE--EEEeCCCCC----CCCCCeEEEEEeCCCCCCCCCCeEEEeccCccccccCCCcEecccCCCCCCccCc--
Q 033385 31 EDNMRYFN--VMILGPTQS----PYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQ-- 102 (120)
Q Consensus 31 ~~~~~~w~--~~i~gp~~t----~y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~~~G~vcl~~l~~~W~p~~~-- 102 (120)
+.|+-.|+ +.++||+|| ..++..-++.|...+.|+..- ... +---.|...|...-+
T Consensus 170 ntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~----liE------------inshsLFSKWFsESgKl 233 (423)
T KOG0744|consen 170 NTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ----LIE------------INSHSLFSKWFSESGKL 233 (423)
T ss_pred CCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce----EEE------------EehhHHHHHHHhhhhhH
Confidence 35667775 466899998 112234678898888888521 111 111123346766553
Q ss_pred HHHHHHHHHHhhcCCC
Q 033385 103 IRTVLLRGEYFLFSRG 118 (120)
Q Consensus 103 v~~vl~~i~~~l~~~~ 118 (120)
|..++..|+.++.+++
T Consensus 234 V~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 234 VAKMFQKIQELVEDRG 249 (423)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888899999888765
No 60
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.16 E-value=67 Score=17.93 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCe
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGI 25 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~ 25 (120)
|++.-++.-+.+|+++-+++.+.+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 6777888888899998887655443
No 61
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=33.93 E-value=24 Score=22.53 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.0
Q ss_pred CCcEecccCCCCCCccCcH
Q 033385 85 LGRICLDILKDKWSPALQI 103 (120)
Q Consensus 85 ~G~vcl~~l~~~W~p~~~v 103 (120)
.|.+|.-.+..+|+|.+++
T Consensus 50 Gg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CceEEEEEcCCCCCCCCEE
Confidence 4566877788899999875
No 62
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=33.53 E-value=29 Score=23.70 Aligned_cols=68 Identities=9% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe---ccCccccccCCC
Q 033385 10 IIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL---TKIYHPNIDKLG 86 (120)
Q Consensus 10 L~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~---t~i~hPnv~~~G 86 (120)
+..++++.+..-..|+++-...++-...=+++. . ...+. .+||.|-+. +..-|+-+...|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~~~~~G~Tvs---------s--~~SvS------ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGDAGRCGITAT---------A--VCSVT------DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecCCCcEEEEEE---------E--EEEeE------cCCCEEEEEECCCCchhHHHHhCC
Confidence 345688888888888876542211011111111 0 11222 469999886 335678888899
Q ss_pred cEecccCC
Q 033385 87 RICLDILK 94 (120)
Q Consensus 87 ~vcl~~l~ 94 (120)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999995
No 63
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=31.76 E-value=1.3e+02 Score=18.48 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=20.5
Q ss_pred CCCCeEEEEEeCCCCCCCCCCeEEEecc
Q 033385 49 YEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (120)
Q Consensus 49 y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 76 (120)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777788888889999 689988865
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=31.45 E-value=82 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=20.6
Q ss_pred CCeEEEEEeCCCCCC------------------CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (120)
.|.|.|.=.+|.-|| ..||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 388999999999997 578999886
No 65
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=29.58 E-value=31 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCeEEEe---ccCccccccCCCcEecccCC
Q 033385 66 MAAPKVRFL---TKIYHPNIDKLGRICLDILK 94 (120)
Q Consensus 66 ~~pP~v~f~---t~i~hPnv~~~G~vcl~~l~ 94 (120)
.+||.|-+. ...-|+.+..+|.+|+++|.
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~ 67 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLA 67 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECc
Confidence 579999886 33567888889999999995
No 66
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=29.55 E-value=93 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=20.8
Q ss_pred CCeEEEEEeCCCCCC------------------CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (120)
.|.|.|.=..|.-|| ..||.|+|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999998 478899886
No 67
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.95 E-value=98 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.609 Sum_probs=20.6
Q ss_pred CCeEEEEEeCCCCCCC-------CCCeEEEe
Q 033385 51 GGVFKLELFLPEEYPM-------AAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP~-------~pP~v~f~ 74 (120)
.|.|.|.=..|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999974 79999985
No 68
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.49 E-value=1.8e+02 Score=23.19 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=12.5
Q ss_pred CeEEEEEeCCCCCCC
Q 033385 52 GVFKLELFLPEEYPM 66 (120)
Q Consensus 52 ~~f~~~i~fp~~YP~ 66 (120)
....+.+.||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 446688999999997
No 69
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=27.45 E-value=57 Score=26.24 Aligned_cols=26 Identities=38% Similarity=0.838 Sum_probs=19.5
Q ss_pred CCCCeEEEEEeCCCC-----CCCCCCeEEEeccCcccccc
Q 033385 49 YEGGVFKLELFLPEE-----YPMAAPKVRFLTKIYHPNID 83 (120)
Q Consensus 49 y~g~~f~~~i~fp~~-----YP~~pP~v~f~t~i~hPnv~ 83 (120)
..|+.|.+++.+.++ ||. .|||||-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 457889999998654 554 69999743
No 70
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.18 E-value=1.1e+02 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.602 Sum_probs=20.8
Q ss_pred CCeEEEEEeCCCCCCC-------CCCeEEEe
Q 033385 51 GGVFKLELFLPEEYPM-------AAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP~-------~pP~v~f~ 74 (120)
.|.|.|.=.+|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999884
No 71
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=27.13 E-value=1.2e+02 Score=23.10 Aligned_cols=39 Identities=26% Similarity=0.533 Sum_probs=27.1
Q ss_pred EEEEEEeC-CCCCCCCCCeEEEEEe---CCCCCCCCCCeEEEec
Q 033385 36 YFNVMILG-PTQSPYEGGVFKLELF---LPEEYPMAAPKVRFLT 75 (120)
Q Consensus 36 ~w~~~i~g-p~~t~y~g~~f~~~i~---fp~~YP~~pP~v~f~t 75 (120)
+|+..+.| ++..-|+++.+++++. |-.-|- ..|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 68888998 4444788998887775 444444 456898853
No 72
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=27.07 E-value=1.1e+02 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.569 Sum_probs=20.4
Q ss_pred CCeEEEEEeCCCCCC------------------CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (120)
.|.|.|.=..|.-|| ..||.|+|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 578888886
No 73
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=26.98 E-value=1.1e+02 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.1
Q ss_pred CCeEEEEEeCCCCCC------------------CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (120)
.|.|.|.=.+|..|| ..||.|+|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 578888886
No 74
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=26.90 E-value=1.8e+02 Score=19.85 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCC----CCeEEEecCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCCCeEEEecc
Q 033385 9 RIIKETQRLLSEPA----PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (120)
Q Consensus 9 RL~~E~~~l~~~~~----~~~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~t~ 76 (120)
..-+|...+..... .|+.+. +.+.=...+.+-.|+-.|-. --..+++.| .||-..||.|.|..+
T Consensus 9 kFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 9 KFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 34556666654331 355433 33333334444435555521 224566666 689999999999977
No 75
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.82 E-value=63 Score=20.92 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHhhCCCCC
Q 033385 5 NLPRRIIKETQRLLSEPAPG 24 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~ 24 (120)
....||++|++...-++..|
T Consensus 27 krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 27 KRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 45569999999988776543
No 76
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=26.53 E-value=70 Score=26.37 Aligned_cols=29 Identities=38% Similarity=0.811 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEeCCCCCCC---CCCeEEEecc
Q 033385 47 SPYEGGVFKLELFLPEEYPM---AAPKVRFLTK 76 (120)
Q Consensus 47 t~y~g~~f~~~i~fp~~YP~---~pP~v~f~t~ 76 (120)
+||.=|.|-+ +.+|++||+ +-|.+.|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4666687774 668999998 7799999996
No 77
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=25.79 E-value=1.1e+02 Score=17.19 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=12.8
Q ss_pred eEEEEEeCCCCCCCCCCeEEEec
Q 033385 53 VFKLELFLPEEYPMAAPKVRFLT 75 (120)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~t 75 (120)
.+...|.|+..|.. ||.|.+.-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i 23 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSI 23 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEE
Confidence 35678999999986 89887753
No 78
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.51 E-value=77 Score=22.65 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCCCeEEEeccCcccccc--CCCcEecccCCCCC--CccCcHHHHHHHHHHhhcCCC
Q 033385 66 MAAPKVRFLTKIYHPNID--KLGRICLDILKDKW--SPALQIRTVLLRGEYFLFSRG 118 (120)
Q Consensus 66 ~~pP~v~f~t~i~hPnv~--~~G~vcl~~l~~~W--~p~~~v~~vl~~i~~~l~~~~ 118 (120)
..||-|.|-.+.|.--|+ +-|.|--++.+.+| .|+-++.+-|..|..+|-.|+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ 223 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPT 223 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCc
Confidence 368999999998887776 34655556666676 688888888888888887665
No 79
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=24.83 E-value=33 Score=17.31 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.0
Q ss_pred CccccccCCCc-Eecc
Q 033385 77 IYHPNIDKLGR-ICLD 91 (120)
Q Consensus 77 i~hPnv~~~G~-vcl~ 91 (120)
-|||.++.+|+ .|-.
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 48999998775 5543
No 80
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=24.76 E-value=64 Score=15.64 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHH
Q 033385 4 SNLPRRIIKETQRL 17 (120)
Q Consensus 4 ~~~~~RL~~E~~~l 17 (120)
+...++|.+|+++.
T Consensus 16 P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 16 PRLARLIRKEIERL 29 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 44567888888764
No 81
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=24.59 E-value=1e+02 Score=20.09 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeE
Q 033385 5 NLPRRIIKETQRLLSEPAPGIS 26 (120)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~~~ 26 (120)
...||+.+|.-.+.+...+|+.
T Consensus 64 NRiKR~lRE~fR~~~~~l~g~D 85 (130)
T PRK00396 64 NRLKRLIRESFRLNQHSLAGWD 85 (130)
T ss_pred HHHHHHHHHHHHHhhccCCCee
Confidence 3678999999988765545554
No 82
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=23.69 E-value=2.6e+02 Score=19.36 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEecCCCCcEEEEEEeCC---CCCCCCCCeEEEEEeCCCCC
Q 033385 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGP---TQSPYEGGVFKLELFLPEEY 64 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp---~~t~y~g~~f~~~i~fp~~Y 64 (120)
...++.+++.++.... .+..+....+.-..|.+.+.+. +.. ...+.+.+.+.+|+=|
T Consensus 53 ~~~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy 112 (249)
T PF05709_consen 53 DFEQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPY 112 (249)
T ss_dssp HHHHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCce
Confidence 3456677787777433 3467777777677888887763 222 2234566666654333
No 83
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=23.47 E-value=1.5e+02 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=20.0
Q ss_pred CCeEEEEEeCCCCCC------------------CCCCeEEEe
Q 033385 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (120)
Q Consensus 51 g~~f~~~i~fp~~YP------------------~~pP~v~f~ 74 (120)
.|.|.|.=..|.-|| ..||.|+|.
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 488999999999997 368888886
No 84
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=86 Score=24.83 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCCC-CCCeEEEec
Q 033385 54 FKLELFLPEEYPM-AAPKVRFLT 75 (120)
Q Consensus 54 f~~~i~fp~~YP~-~pP~v~f~t 75 (120)
..+...+|++||. +||.+...+
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeeecCCccccCCCCceeeeh
Confidence 3466779999997 566665543
No 85
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=23.26 E-value=50 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=24.3
Q ss_pred CCCCCCeEEEe---ccCccccccCCCcEecccCC
Q 033385 64 YPMAAPKVRFL---TKIYHPNIDKLGRICLDILK 94 (120)
Q Consensus 64 YP~~pP~v~f~---t~i~hPnv~~~G~vcl~~l~ 94 (120)
--.+||.+.+. +..-|+.+..+|.+++++|.
T Consensus 39 vS~~PP~v~v~l~~~s~t~~~i~~s~~F~VnvL~ 72 (156)
T TIGR03615 39 VTDTPPTLLVCLNRSASAYPAFKQNGTLCVNTLA 72 (156)
T ss_pred ccCCCCEEEEEeCCCcchhHHHHhCCeEEEEECc
Confidence 34579999886 33567788889999999995
No 86
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=23.15 E-value=77 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=20.0
Q ss_pred CCCCeEEEEEeCCCCCCCCCCeEEEeccCcccccc
Q 033385 49 YEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (120)
Q Consensus 49 y~g~~f~~~i~fp~~YP~~pP~v~f~t~i~hPnv~ 83 (120)
..|+.|.+++.+.++--.+ .+-..|||||-+
T Consensus 359 ~~~~~yElDLVLRnN~Tse----e~P~GIFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSE----EHPDGIFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCcc----ccCCccccCchh
Confidence 5689999999988652211 111268999743
No 87
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.02 E-value=74 Score=17.68 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHhhC
Q 033385 6 LPRRIIKETQRLLSE 20 (120)
Q Consensus 6 ~~~RL~~E~~~l~~~ 20 (120)
..||+++|+++++++
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456888888887764
No 88
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.38 E-value=1.7e+02 Score=21.73 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEEeCCCCCCCCC--CeEEEecc
Q 033385 47 SPYEGGVFKLELFLPEEYPMAA--PKVRFLTK 76 (120)
Q Consensus 47 t~y~g~~f~~~i~fp~~YP~~p--P~v~f~t~ 76 (120)
+.+.|..|++.+..|.+||-.- |.|.|..-
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 4577899999999999999887 99999743
No 89
>PHA02131 hypothetical protein
Probab=21.95 E-value=39 Score=18.96 Aligned_cols=18 Identities=50% Similarity=0.857 Sum_probs=8.3
Q ss_pred cCccc-cccC-CCcEecccC
Q 033385 76 KIYHP-NIDK-LGRICLDIL 93 (120)
Q Consensus 76 ~i~hP-nv~~-~G~vcl~~l 93 (120)
++||| +|.+ +|.--.+++
T Consensus 2 kiyhpqhiakvngitkvdmi 21 (70)
T PHA02131 2 KIYHPQHIAKVNGITKVDMI 21 (70)
T ss_pred cccchhHhhhhcCceEEEEe
Confidence 46677 3433 444444433
No 90
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=21.64 E-value=82 Score=24.97 Aligned_cols=24 Identities=42% Similarity=0.981 Sum_probs=18.5
Q ss_pred CCCeEEEEEeCCCC-----CCCCCCeEEEeccCccccc
Q 033385 50 EGGVFKLELFLPEE-----YPMAAPKVRFLTKIYHPNI 82 (120)
Q Consensus 50 ~g~~f~~~i~fp~~-----YP~~pP~v~f~t~i~hPnv 82 (120)
.||.|.+++.+.++ ||. .|||||-
T Consensus 362 R~~~yELDlVLRnNrT~e~yPd---------GIFHPH~ 390 (503)
T COG4468 362 RGGLYELDLVLRNNRTSEEYPD---------GIFHPHQ 390 (503)
T ss_pred cCCeeEEEEEEecCCccccCCC---------cccCCcH
Confidence 47999999998754 554 6899963
No 91
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=21.53 E-value=71 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCCCeEEEec---cCccccccCCCcEecccCC
Q 033385 66 MAAPKVRFLT---KIYHPNIDKLGRICLDILK 94 (120)
Q Consensus 66 ~~pP~v~f~t---~i~hPnv~~~G~vcl~~l~ 94 (120)
.+||.|.+.- .--++++..+|.+|++++.
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~ 75 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLS 75 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCC
Confidence 3588888863 3457889999999999985
No 92
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.44 E-value=1.5e+02 Score=18.78 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=14.9
Q ss_pred CCCchHHHHHHHHHHHhhC
Q 033385 2 ANSNLPRRIIKETQRLLSE 20 (120)
Q Consensus 2 a~~~~~~RL~~E~~~l~~~ 20 (120)
+++.+.+||.++++.+.+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~ 20 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS 20 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3567889999999999754
No 93
>PF15572 Imm26: Immunity protein 26
Probab=21.03 E-value=1.2e+02 Score=18.98 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=16.5
Q ss_pred CCCCCCCCCeEEEEEeCCCCCCCCCCeEEEe
Q 033385 44 PTQSPYEGGVFKLELFLPEEYPMAAPKVRFL 74 (120)
Q Consensus 44 p~~t~y~g~~f~~~i~fp~~YP~~pP~v~f~ 74 (120)
+++.++.|..|++ |..||.+ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 3455666765554 5559988 566664
No 94
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.58 E-value=1e+02 Score=18.13 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEE
Q 033385 1 MANSNLPRRIIKETQRLLSEPAPGISA 27 (120)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~~~~~ 27 (120)
|+-+...+|..+|+++-....+|.+..
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~DP~fa~ 27 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRADDPRFAA 27 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 666777889999998876666665543
No 95
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=20.54 E-value=2e+02 Score=24.09 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEe----cCCCCcEEEEEEeCCCCCCCCCCeEEEEEeCCCCCCCCC
Q 033385 9 RIIKETQRLLSEPAPGISASP----SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAA 68 (120)
Q Consensus 9 RL~~E~~~l~~~~~~~~~~~~----~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~YP~~p 68 (120)
-|++|+..|.. -+.+.+ .++|--+..|.|. .+.-| -+++..|.+||.-.
T Consensus 623 vlqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 623 VLQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred HHHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc
Confidence 57788887742 333433 2344334445554 23333 38999999999754
No 96
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=1.5e+02 Score=20.08 Aligned_cols=30 Identities=23% Similarity=0.076 Sum_probs=25.2
Q ss_pred ccCCCcEecccCCCCCCccCcHHHHHHHHHHh
Q 033385 82 IDKLGRICLDILKDKWSPALQIRTVLLRGEYF 113 (120)
Q Consensus 82 v~~~G~vcl~~l~~~W~p~~~v~~vl~~i~~~ 113 (120)
|+++|+|..-. .++++.-+...|+..|..+
T Consensus 126 Id~dG~I~~~~--~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 126 IDPDGKIRYVW--RKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ECCCCeEEEEe--cCCCCcccHHHHHHHHHHh
Confidence 77899998776 6789999999999888765
No 97
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.45 E-value=54 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCCeEEEeccCccccccC-CCcEecccC-----CCCCCccCcHHHHHHHHH
Q 033385 67 AAPKVRFLTKIYHPNIDK-LGRICLDIL-----KDKWSPALQIRTVLLRGE 111 (120)
Q Consensus 67 ~pP~v~f~t~i~hPnv~~-~G~vcl~~l-----~~~W~p~~~v~~vl~~i~ 111 (120)
.-|-|+|..-.|.|-+.+ .|.+|..++ ...+.|..|-..|+.-|.
T Consensus 295 ~LpGV~Frp~~f~P~FsK~~gelc~GVql~v~D~k~f~pv~Tgl~i~~vik 345 (409)
T COG3876 295 GLPGVTFRPFSFEPFFSKYKGELCSGVQLVVQDPKIFYPVETGLTIWGVIK 345 (409)
T ss_pred CCCCeEEeeeecccchhhccceeecceEEEEeccccceeeeccceehhhhh
Confidence 347889998889999988 799998876 245777666555444444
No 98
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.16 E-value=1.2e+02 Score=18.88 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCCCCCCCeEEEEEeCCC
Q 033385 36 YFNVMILGPTQSPYEGGVFKLELFLPE 62 (120)
Q Consensus 36 ~w~~~i~gp~~t~y~g~~f~~~i~fp~ 62 (120)
-+++.+.|++..+=+|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368889998888889999999998865
Done!