BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033386
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++P+RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 3 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 62
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 63 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++P+RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 2 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 61
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 62 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 104/115 (90%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++P+RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 103/115 (89%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++ +RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 103/115 (89%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++ +RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 103/115 (89%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
KS+FK E+P E+R AES RI +++ +RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
YV+RKRI L EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 153 bits (386), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 91/116 (78%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K FK +H LE R ESA+IR KYPDR+PVIVEK + + DIDK+KYLVP+D++V QF+
Sbjct: 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118
+++RKRI+L +EKAIF+FV T+P + M +YE+ KDEDGFLY+ YSGENTFG+
Sbjct: 62 WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K +K EHP E+R +E +IR+KYPDR+PVIVEKA K + D+DKKKYLVP+DL+VGQF
Sbjct: 4 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N +PPT A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 64 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 145 bits (365), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K +K EHP E+R +E +IR+KYPDR+PVIVEKA K + D+DKKKYLVP+DL+VGQF
Sbjct: 2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 61
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N +PPT A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 62 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 145 bits (365), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K +K EHP E+R +E +IR+KYPDR+PVIVEKA K + D+DKKKYLVP+DL+VGQF
Sbjct: 4 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L AE A+F FV N +PPT A M +Y+E+ +ED FLY+ YS E+ +G
Sbjct: 64 FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 86/115 (74%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K +K EH E+R AE +IR KYPDR+PVIVEKA K + D+DKKKYLVP+DL+VGQF
Sbjct: 10 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 69
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+++RKRI L E A+F FV N +PPT A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 70 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 85/113 (75%)
Query: 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFV 62
K +K +HP E R E +IR+KYPDR+PVIVEKA K VPD+DK+KYLVP+DL+VGQF
Sbjct: 6 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 65
Query: 63 YVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENT 115
+++RKRI L E A+F FV NT+PPT A M +YE+N +ED FLY+ YS E+
Sbjct: 66 FLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESV 118
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 89/114 (78%)
Query: 4 SSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVY 63
S +K+ H E R +++A++RE++PDR+P+I EK +D+ ++D+ K+LVP+DL+VGQFV
Sbjct: 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVS 65
Query: 64 VVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
V+RKR++L AE A+FV+ +T+ P+ A M+ IY + KDEDGFLYM YSGE TFG
Sbjct: 66 VLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 82/107 (76%)
Query: 5 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYV 64
+K +HP E R E +IR+KYPDR+PVIVEKA K VPD+DK+KYLVP+DL+VGQF ++
Sbjct: 3 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 65 VRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111
+RKRI L E A+F FV NT+PPT A M +YE+N +ED FLY+ YS
Sbjct: 63 IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 1 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQ 60
M S K E E R+AE+ +IR KYP+RIPV++E+A ++++P I+KKK+LVP ++ VG+
Sbjct: 3 MGMPSLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGE 62
Query: 61 FVYVVRKRIKLSA---------EKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111
F +++ + I SA E+ I++FV N +P TG LM +YE KDEDG+LYM YS
Sbjct: 63 FKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYS 122
Query: 112 GENTFG 117
E++ G
Sbjct: 123 SESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Query: 6 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYV 64
FK L R E A IR K+P++IPV+VE+ +T +P +DK K+LVP +L++ QF+ +
Sbjct: 15 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 74
Query: 65 VRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+R R+ L A +A ++ V N +L A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct: 75 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 79/122 (64%), Gaps = 4/122 (3%)
Query: 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVG 59
++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++
Sbjct: 8 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118
+ + ++R+R++L+A +A F+ V +++ +S +YE KDEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126
Query: 119 SF 120
Sbjct: 127 KL 128
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVG 59
++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++
Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 61
Query: 60 QFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V +++ +S +YE KDEDGFLYM Y+ + TFG
Sbjct: 62 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVG 59
++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118
+ + ++R+R++L+A +A F+ V +++ +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGT 126
Query: 119 SF 120
+
Sbjct: 127 AL 128
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVG 59
++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++
Sbjct: 4 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 62
Query: 60 QFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V +++ +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 63 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVG 59
++ +FK E+R+ + IRE++P +IPVI+E K EK +P +DK K+LVP +++
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMS 66
Query: 60 QFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117
+ + ++R+R++L+A +A F+ V +++ +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 67 ELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 6 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVY 63
FK R E +IR+++P +IPVI+E K EK +P +DK K+LVP +++ + V
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQ-LPVLDKTKFLVPDHVNMSELVK 66
Query: 64 VVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118
++R+R++L+ +A F+ V ++++ ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct: 67 IIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 122
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 41 DVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENK 100
D P + KK+ V ++ + ++K +KL A + +F++V + P+ E
Sbjct: 15 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECF 74
Query: 101 DEDGFLYMTYSGENTFG 117
DG L + Y +G
Sbjct: 75 GSDGKLVLHYCKSQAWG 91
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 56 LSVGQFVY-VVRKRIK----------LSAEKAIFVFVKNTLPPTGAL-MSAIYEENKDED 103
LS+G+ + ++R+R+ L AE+ +F K + PTGAL ++A+ E
Sbjct: 236 LSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARLP 295
Query: 104 GFLYMTYSGEN 114
L + SG N
Sbjct: 296 QTLALLLSGGN 306
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 12 LERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKL 71
L+ LA + +P E E +++ + KY+ P V F + +
Sbjct: 62 LQEELAPFGLVILGFPCNQFGKQEPGENSEI--LPTLKYVRPGGGFVPNFQLFEKGDVNG 119
Query: 72 SAEKAIFVFVKNTLPPTGALMSA 94
E+ + F+KN+ PPT L+
Sbjct: 120 EKEQKFYTFLKNSCPPTSELLGT 142
>pdb|2HMA|A Chain A, The Crystal Structure Of Trna
(5-Methylaminomethyl-2-Thiouridylate)- Methyltransferase
Trmu From Streptococcus Pneumoniae
Length = 376
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 6 FKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSV 58
F E P E L +A+ R + PD + K EKT+V + ++ + P V
Sbjct: 298 FTREXPEEFTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVV 350
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 87 PTGALMSAIYEENKDEDGFLYMTYSG 112
P GA++ + +EN+D+DGF ++G
Sbjct: 28 PEGAIIRILNKENQDDDGFWEGEFNG 53
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 22 IREKYPDRIPVIVEKAEKTDVPDID--KKKYL----VPADL-SVGQFVYVVRKRIKLSAE 74
IR+ P+ + + + K T +PD +KKYL +P +L ++GQ V+ R+ + E
Sbjct: 221 IRDYXPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLE 280
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 PPTGALMSAIYEENKDEDGFLYMT---YSGENTFGWSF 120
PPTGAL AI E+ D + +T +G GW+F
Sbjct: 106 PPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAF 143
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 PPTGALMSAIYEENKDEDGFLYMT---YSGENTFGWSF 120
PPTGAL AI E+ D + +T +G GW+F
Sbjct: 106 PPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAF 143
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 PPTGALMSAIYEENKDEDGFLYMT---YSGENTFGWSF 120
PPTGAL AI E+ D + +T +G GW+F
Sbjct: 98 PPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSGWAF 135
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 PPTGALMSAIYEENKDEDGFLYMT---YSGENTFGWSF 120
PPTGAL AI E+ D + +T +G GW+F
Sbjct: 98 PPTGALAXAIDEQFGSLDELIXLTNTXLAGVQGSGWAF 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,459,516
Number of Sequences: 62578
Number of extensions: 125788
Number of successful extensions: 397
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 35
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)