Query 033386
Match_columns 120
No_of_seqs 117 out of 384
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 1.7E-55 5.8E-60 310.5 14.9 116 2-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 2.7E-55 9.3E-60 312.0 13.3 117 2-118 9-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 2.4E-54 8.1E-59 305.0 12.6 114 4-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 8.8E-53 3E-57 296.1 13.4 117 2-118 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 7.5E-53 2.6E-57 301.3 10.6 117 2-119 9-127 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 3.4E-48 1.2E-52 270.0 12.8 110 3-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 9.2E-36 3.1E-40 201.4 10.6 86 31-117 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 1.7E-34 5.8E-39 196.9 9.8 85 27-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 2E-33 6.7E-38 190.0 9.1 85 27-117 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.7 0.013 4.4E-07 46.3 5.1 98 10-111 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.4 0.051 1.7E-06 42.4 7.3 81 28-112 183-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.0 0.015 5.2E-07 45.3 3.4 74 26-109 196-272 (274)
13 3goe_A DNA repair protein RAD6 93.6 0.22 7.4E-06 32.4 5.9 47 47-93 21-67 (82)
14 2uyz_B Small ubiquitin-related 86.0 2 6.7E-05 25.9 5.3 59 48-110 16-74 (79)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 86.0 4.2 0.00014 24.8 7.0 75 27-112 5-80 (87)
16 3a4r_A Nfatc2-interacting prot 84.9 2.9 9.8E-05 25.9 5.8 63 27-95 5-67 (79)
17 1oey_A P67-PHOX, neutrophil cy 84.4 3.5 0.00012 26.5 6.1 58 50-109 18-79 (83)
18 1wyw_B Ubiquitin-like protein 82.9 7 0.00024 24.8 7.2 76 26-111 18-93 (97)
19 1uh6_A Ubiquitin-like 5; beta- 82.8 4 0.00014 26.9 6.1 59 49-111 42-100 (100)
20 1wy8_A NP95-like ring finger p 82.3 3.4 0.00011 25.4 5.3 57 52-112 26-82 (89)
21 1we6_A Splicing factor, putati 81.9 8 0.00028 25.0 7.3 83 21-111 19-103 (111)
22 4dwf_A HLA-B-associated transc 81.6 4.7 0.00016 24.9 5.8 75 27-112 3-77 (90)
23 2k8h_A Small ubiquitin protein 81.1 9.8 0.00033 25.3 8.1 62 27-95 24-85 (110)
24 3mtn_B UBA80, ubcep1, ubiquiti 80.5 1.8 6.3E-05 26.1 3.5 59 49-111 17-75 (85)
25 4eew_A Large proline-rich prot 80.5 5.3 0.00018 24.5 5.8 62 26-94 14-75 (88)
26 2hj8_A Interferon-induced 17 k 80.3 3.8 0.00013 25.5 5.0 60 49-112 18-77 (88)
27 1ndd_A NEDD8, protein (ubiquit 80.1 2.4 8.1E-05 24.9 3.9 58 49-111 14-72 (76)
28 3a9j_A Ubiquitin; protein comp 79.2 2.4 8.3E-05 24.9 3.7 58 49-111 14-72 (76)
29 3n3k_B Ubiquitin; hydrolase, p 78.5 1.7 6E-05 26.3 3.0 60 49-112 17-76 (85)
30 2dzi_A Ubiquitin-like protein 77.3 2.6 8.8E-05 25.3 3.5 60 28-94 6-65 (81)
31 2kvr_A Ubiquitin carboxyl-term 77.2 2.5 8.5E-05 29.1 3.7 54 48-101 58-119 (130)
32 2io0_B Small ubiquitin-related 77.1 5.8 0.0002 25.4 5.3 62 27-95 3-64 (91)
33 2kk8_A Uncharacterized protein 76.8 5.8 0.0002 24.6 5.1 56 50-109 25-81 (84)
34 1yqb_A Ubiquilin 3; structural 76.8 12 0.00041 23.9 7.6 75 27-112 20-94 (100)
35 3phx_B Ubiquitin-like protein 75.4 3.8 0.00013 24.6 3.9 57 49-110 18-75 (79)
36 1wx7_A Ubiquilin 3; ubiquitin- 75.4 7.7 0.00026 24.9 5.6 73 28-112 16-89 (106)
37 2l7r_A Ubiquitin-like protein 75.0 6.2 0.00021 24.8 5.0 71 27-110 17-88 (93)
38 2bwf_A Ubiquitin-like protein 74.6 4.4 0.00015 23.9 4.0 57 49-110 17-74 (77)
39 3dbh_I NEDD8; cell cycle, acti 73.9 2.9 9.9E-05 25.5 3.1 58 49-110 26-83 (88)
40 3k9o_B Ubiquitin, UBB+1; E2-25 73.8 3.6 0.00012 25.7 3.6 60 49-112 15-74 (96)
41 2kan_A Uncharacterized protein 72.8 7.1 0.00024 24.7 4.9 75 27-112 13-88 (94)
42 3v6c_B Ubiquitin; structural g 72.3 10 0.00034 23.5 5.4 45 49-94 31-75 (91)
43 2jxx_A Nfatc2-interacting prot 72.2 11 0.00036 24.7 5.7 65 25-95 21-85 (97)
44 1we7_A SF3A1 protein; structur 72.2 17 0.00059 23.6 9.2 85 22-111 18-107 (115)
45 3plu_A Ubiquitin-like modifier 71.8 12 0.00039 24.5 5.7 81 19-110 11-92 (93)
46 1yx5_B Ubiquitin; proteasome, 71.4 4.6 0.00016 25.4 3.7 59 49-112 14-73 (98)
47 4fbj_B NEDD8; effector-HOST ta 71.0 3.6 0.00012 25.6 3.0 59 49-111 14-72 (88)
48 2faz_A Ubiquitin-like containi 69.2 4.9 0.00017 23.9 3.3 56 50-110 18-75 (78)
49 1wx8_A Riken cDNA 4931431F19; 68.6 7.9 0.00027 24.2 4.3 73 27-111 15-88 (96)
50 1wju_A NEDD8 ultimate buster-1 68.3 8.4 0.00029 25.3 4.5 46 48-94 32-77 (100)
51 1ip9_A BEM1 protein; ubiquitin 68.1 5.9 0.0002 25.7 3.6 30 50-80 26-55 (85)
52 2lxa_A Ubiquitin-like protein 67.8 13 0.00046 23.4 5.3 43 52-95 20-63 (87)
53 4hcn_B Polyubiquitin, ubiquiti 67.1 5.7 0.0002 25.2 3.4 73 27-110 20-93 (98)
54 2kd0_A LRR repeats and ubiquit 66.6 5.3 0.00018 24.8 3.1 56 50-110 26-82 (85)
55 1sif_A Ubiquitin; hydrophobic 66.5 6.2 0.00021 24.5 3.5 58 49-111 23-81 (88)
56 1wgd_A Homocysteine-responsive 66.4 10 0.00034 23.6 4.5 76 28-111 6-85 (93)
57 1vd2_A Protein kinase C, IOTA 66.2 23 0.0008 22.8 6.4 61 48-108 18-86 (89)
58 2fnj_B Transcription elongatio 66.0 24 0.00082 23.8 6.6 63 51-116 17-85 (118)
59 1ttn_A DC-UBP, dendritic cell- 64.4 17 0.00058 23.3 5.4 60 49-113 37-97 (106)
60 4dbg_A Ranbp-type and C3HC4-ty 64.0 28 0.00097 22.9 7.3 61 29-94 24-84 (105)
61 1x1m_A Ubiquitin-like protein 63.4 22 0.00077 22.7 5.9 55 55-113 44-101 (107)
62 1wm3_A Ubiquitin-like protein 62.9 14 0.00047 22.1 4.4 47 48-95 14-60 (72)
63 3m63_B Ubiquitin domain-contai 62.8 4.7 0.00016 26.0 2.4 61 27-95 26-86 (101)
64 2eke_C Ubiquitin-like protein 62.7 6.9 0.00024 25.9 3.2 47 48-95 43-89 (106)
65 1v5t_A 8430435I17RIK protein; 62.4 17 0.00057 22.6 4.9 60 51-113 23-84 (90)
66 2ojr_A Ubiquitin; lanthide-bin 62.2 10 0.00035 24.6 4.0 58 49-111 49-107 (111)
67 3vdz_A Ubiquitin-40S ribosomal 61.3 8.1 0.00028 25.2 3.4 58 49-110 49-106 (111)
68 2klc_A Ubiquilin-1; ubiquitin- 60.7 8.1 0.00028 24.7 3.2 73 27-111 23-96 (101)
69 3b08_A Polyubiquitin-C, ubiqui 60.5 27 0.00092 23.0 6.1 58 49-111 90-148 (152)
70 1yfb_A Transition state regula 59.3 8 0.00027 23.0 2.8 21 63-83 28-48 (59)
71 2kdi_A Ubiquitin, vacuolar pro 58.7 7.2 0.00025 25.7 2.8 59 50-113 24-83 (114)
72 3m62_B UV excision repair prot 58.4 6.1 0.00021 25.6 2.4 60 50-113 16-75 (106)
73 3rt3_B Ubiquitin-like protein 58.1 13 0.00043 25.3 4.1 58 50-111 17-76 (159)
74 1wjn_A Tubulin-folding protein 57.4 12 0.00042 23.5 3.7 32 50-81 27-59 (97)
75 2io1_B Small ubiquitin-related 57.1 34 0.0012 21.7 5.8 62 27-95 5-66 (94)
76 2wyq_A HHR23A, UV excision rep 56.9 28 0.00097 20.7 7.8 77 27-114 3-83 (85)
77 1j8c_A Ubiquitin-like protein 56.5 13 0.00044 24.9 3.8 59 49-112 45-104 (125)
78 1v5o_A 1700011N24RIK protein; 56.4 11 0.00039 24.0 3.4 57 50-110 26-83 (102)
79 3b1l_X E3 ubiquitin-protein li 61.2 2.3 8E-05 25.3 0.0 45 50-95 15-59 (76)
80 2l66_A SSO7C4, transcriptional 54.5 11 0.00039 21.5 2.8 21 63-83 18-38 (53)
81 3b08_A Polyubiquitin-C, ubiqui 53.4 11 0.00037 25.0 3.0 58 49-111 14-72 (152)
82 1mvf_D MAZE protein, PEMI-like 53.0 8.8 0.0003 23.7 2.3 49 63-117 19-74 (82)
83 1wxv_A BAG-family molecular ch 52.2 23 0.00079 21.8 4.3 74 28-113 6-86 (92)
84 2dzm_A FAS-associated factor 1 51.8 23 0.00079 22.9 4.4 61 50-114 23-84 (100)
85 3rt3_B Ubiquitin-like protein 51.0 48 0.0016 22.2 6.1 58 49-111 95-153 (159)
86 1v86_A DNA segment, CHR 7, way 49.9 12 0.0004 23.7 2.6 45 49-95 30-74 (95)
87 1uel_A HHR23B, UV excision rep 49.1 18 0.00063 22.5 3.5 60 49-113 14-77 (95)
88 3kyd_D Small ubiquitin-related 48.3 17 0.0006 24.4 3.4 62 27-95 38-99 (115)
89 2d07_B Ubiquitin-like protein 48.1 28 0.00094 22.0 4.2 62 27-95 15-76 (93)
90 2kc2_A Talin-1, F1; FERM, adhe 47.4 33 0.0011 23.5 4.7 41 41-82 17-57 (128)
91 1v6e_A Cytoskeleton-associated 47.3 49 0.0017 20.5 6.2 47 28-79 6-53 (95)
92 2kdb_A Homocysteine-responsive 46.0 17 0.00058 23.4 3.0 65 27-97 21-88 (99)
93 1j0g_A Hypothetical protein 18 44.7 61 0.0021 20.9 6.3 56 45-101 23-79 (92)
94 1pqs_A Cell division control p 43.5 16 0.00055 22.9 2.4 23 50-72 6-28 (77)
95 3u30_A Ubiquitin, linear DI-ub 43.4 25 0.00087 24.1 3.8 58 49-111 34-92 (172)
96 2kjr_A CG11242; UBL, ubiquitin 43.1 61 0.0021 20.5 8.6 64 27-94 13-81 (95)
97 3u5e_m 60S ribosomal protein L 42.7 5.2 0.00018 26.8 0.0 45 50-95 15-59 (128)
98 2i1s_A Hypothetical protein; m 42.7 57 0.002 23.1 5.7 28 48-75 24-51 (188)
99 2kj6_A Tubulin folding cofacto 42.5 64 0.0022 20.5 8.4 63 28-94 13-81 (97)
100 2daf_A FLJ35834 protein; hypot 42.5 41 0.0014 22.8 4.6 44 50-94 31-74 (118)
101 4b6w_A Tubulin-specific chaper 42.1 24 0.00082 22.0 3.2 44 50-93 19-68 (86)
102 3fdj_A DEGV family protein; GU 41.9 34 0.0012 25.9 4.6 52 48-113 34-86 (278)
103 1x5p_A Negative elongation fac 41.5 25 0.00085 21.4 3.2 34 79-113 18-59 (97)
104 2e5i_A Heterogeneous nuclear r 41.4 22 0.00076 23.7 3.1 30 72-101 21-51 (124)
105 4a3p_A Ubiquitin carboxyl-term 41.0 88 0.003 22.6 6.6 60 49-111 143-208 (217)
106 1q1o_A Cell division control p 40.1 14 0.00049 24.4 1.9 25 48-72 25-49 (98)
107 1wz0_A Ubiquitin-like protein 39.7 38 0.0013 22.0 4.0 61 28-95 23-83 (104)
108 3l0w_B Monoubiquitinated proli 38.9 36 0.0012 23.8 4.0 59 49-111 14-72 (169)
109 3u5c_f 40S ribosomal protein S 36.9 7.2 0.00025 27.3 0.0 45 50-95 15-59 (152)
110 2bz2_A Negative elongation fac 36.7 26 0.00088 22.8 2.8 35 78-113 41-83 (121)
111 1v2y_A 3300001G02RIK protein; 34.1 18 0.00061 23.8 1.6 64 51-117 23-101 (105)
112 3gs2_A E3 ubiquitin-protein li 33.9 1.1E+02 0.0037 20.6 9.5 84 29-112 3-109 (111)
113 2ylm_A Ubiquitin carboxyl-term 33.8 40 0.0014 28.0 4.0 61 49-110 150-216 (530)
114 3zzy_A Polypyrimidine tract-bi 33.8 32 0.0011 23.3 2.9 33 69-101 21-54 (130)
115 3q3f_A Ribonuclease/ubiquitin 33.7 32 0.0011 24.9 3.1 58 49-111 119-177 (189)
116 4efo_A Serine/threonine-protei 33.6 72 0.0025 20.6 4.5 36 48-83 26-61 (94)
117 4ajy_B Transcription elongatio 33.5 37 0.0013 23.0 3.2 63 52-117 18-86 (118)
118 2l32_A Small archaeal modifier 33.3 39 0.0013 20.5 3.0 36 50-90 15-50 (74)
119 3tuo_A DNA-binding protein SAT 33.1 43 0.0015 22.4 3.3 69 28-98 6-93 (105)
120 1wf9_A NPL4 family protein; be 33.0 14 0.00047 23.9 0.9 60 50-114 21-97 (107)
121 1ryj_A Unknown; beta/alpha pro 32.5 39 0.0013 20.0 2.9 36 50-90 18-53 (70)
122 4a20_A Ubiquitin-like protein 31.1 32 0.0011 22.1 2.5 72 27-111 17-95 (98)
123 3tix_A Ubiquitin-like protein 31.0 30 0.001 25.8 2.5 61 27-95 55-115 (207)
124 2pjh_A Protein NPL4, nuclear p 30.7 25 0.00087 21.6 1.8 29 51-79 19-48 (80)
125 1ug8_A Poly(A)-specific ribonu 30.1 41 0.0014 21.6 2.8 19 14-32 41-59 (87)
126 2kzr_A Ubiquitin thioesterase 29.3 43 0.0015 20.3 2.8 58 52-112 17-78 (86)
127 2diu_A KIAA0430 protein; struc 28.9 80 0.0027 20.5 4.1 43 71-114 5-57 (96)
128 1sjr_A Polypyrimidine tract-bi 28.8 78 0.0027 22.3 4.4 30 72-101 42-72 (164)
129 3pge_A SUMO-modified prolifera 28.3 47 0.0016 24.3 3.2 50 27-83 27-76 (200)
130 2w1t_A Spovt, stage V sporulat 28.3 43 0.0015 24.2 2.9 20 63-82 20-39 (178)
131 3ai5_A Yeast enhanced green fl 28.1 84 0.0029 24.4 4.8 46 49-95 247-292 (307)
132 2ylm_A Ubiquitin carboxyl-term 27.8 1.8E+02 0.0063 23.9 7.1 68 28-98 238-313 (530)
133 1vjk_A Molybdopterin convertin 27.7 38 0.0013 21.3 2.4 43 49-91 30-82 (98)
134 3jr7_A Uncharacterized EGV fam 26.2 83 0.0028 24.0 4.4 56 46-113 52-107 (298)
135 1t0y_A Tubulin folding cofacto 25.9 1.4E+02 0.0048 19.4 7.7 47 28-79 5-52 (122)
136 3beg_B Splicing factor, argini 25.1 91 0.0031 19.6 3.9 36 79-114 19-62 (115)
137 2al3_A TUG long isoform; TUG U 25.1 80 0.0027 20.4 3.5 41 43-84 17-57 (90)
138 3u30_A Ubiquitin, linear DI-ub 24.8 57 0.002 22.3 3.0 45 49-94 110-154 (172)
139 3po0_A Small archaeal modifier 24.6 32 0.0011 21.0 1.5 42 49-90 21-72 (89)
140 2wbr_A GW182, gawky, LD47780P; 23.8 1.2E+02 0.0041 19.3 4.2 38 76-113 7-53 (89)
141 3s5o_A 4-hydroxy-2-oxoglutarat 23.5 68 0.0023 24.4 3.5 30 9-38 63-92 (307)
142 2dt8_A DEGV family protein; fa 23.2 90 0.0031 23.4 4.1 57 47-113 34-91 (280)
143 2dnf_A Doublecortin domain-con 23.0 1.6E+02 0.0055 19.1 5.5 75 27-113 10-89 (108)
144 1x4c_A Splicing factor, argini 22.9 96 0.0033 19.1 3.6 24 90-113 30-60 (108)
145 1fm0_D Molybdopterin convertin 22.7 36 0.0012 20.3 1.4 37 53-90 23-64 (81)
146 3l21_A DHDPS, dihydrodipicolin 22.4 57 0.002 24.8 2.8 99 10-113 65-179 (304)
147 2l76_A Nfatc2-interacting prot 22.4 1.2E+02 0.0042 19.7 4.0 47 48-95 33-79 (95)
148 3d2w_A TAR DNA-binding protein 22.3 96 0.0033 18.6 3.4 36 79-114 14-59 (89)
149 3qij_A Protein 4.1; cytoskelet 22.2 1.9E+02 0.0066 21.5 5.8 65 24-94 12-81 (296)
150 2yxg_A DHDPS, dihydrodipicolin 21.9 62 0.0021 24.3 2.9 101 9-113 49-165 (289)
151 3cmm_A Ubiquitin-activating en 21.7 1.1E+02 0.0036 27.8 4.7 51 49-100 921-981 (1015)
152 3fys_A Protein DEGV; fatty aci 21.5 1.4E+02 0.0048 22.9 5.0 59 45-113 66-125 (315)
153 3e96_A Dihydrodipicolinate syn 21.5 64 0.0022 24.7 2.9 28 10-37 62-89 (316)
154 2ehh_A DHDPS, dihydrodipicolin 21.4 65 0.0022 24.3 2.9 31 9-39 49-79 (294)
155 3cpr_A Dihydrodipicolinate syn 21.1 63 0.0022 24.5 2.8 31 9-39 65-95 (304)
156 1f6k_A N-acetylneuraminate lya 21.0 66 0.0023 24.2 2.9 31 9-39 53-83 (293)
157 3rpf_C Molybdopterin convertin 20.8 36 0.0012 20.3 1.1 39 54-92 19-59 (74)
158 2rdm_A Response regulator rece 20.7 77 0.0026 19.2 2.8 54 17-72 68-124 (132)
159 3eb2_A Putative dihydrodipicol 20.3 51 0.0018 25.0 2.2 100 9-113 53-168 (300)
160 2wkj_A N-acetylneuraminate lya 20.3 68 0.0023 24.4 2.8 30 9-38 60-89 (303)
161 3ivf_A Talin-1; FERM domain, c 20.3 1.9E+02 0.0063 22.2 5.4 40 42-81 92-131 (371)
162 3d0c_A Dihydrodipicolinate syn 20.2 70 0.0024 24.5 2.9 30 9-38 61-90 (314)
163 3h5d_A DHDPS, dihydrodipicolin 20.1 83 0.0028 24.0 3.3 99 9-112 56-171 (311)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=1.7e-55 Score=310.50 Aligned_cols=116 Identities=72% Similarity=1.179 Sum_probs=112.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033386 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV 81 (120)
Q Consensus 2 ~~~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 81 (120)
|+++||++||||+|++|+++||+|||++||||||+++++++|.||++|||||+++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHhHccCCCCeEEEEecCccccC
Q 033386 82 KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 82 n~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~afG 117 (120)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=2.7e-55 Score=312.04 Aligned_cols=117 Identities=56% Similarity=0.973 Sum_probs=113.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033386 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV 81 (120)
Q Consensus 2 ~~~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 81 (120)
|+++||++||||+|++|+++||+|||++||||||+++++++|+|||+|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHhHccCCCCeEEEEecCccccCC
Q 033386 82 KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118 (120)
Q Consensus 82 n~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~afG~ 118 (120)
||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 9999999999999999999999999999999999994
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=2.4e-54 Score=305.04 Aligned_cols=114 Identities=53% Similarity=0.966 Sum_probs=111.0
Q ss_pred CcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC
Q 033386 4 SSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN 83 (120)
Q Consensus 4 ~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 83 (120)
++||++||||+|++|+++||+|||++||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHhHccCCCCeEEEEecCccccC
Q 033386 84 TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 84 ~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~afG 117 (120)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=8.8e-53 Score=296.13 Aligned_cols=117 Identities=59% Similarity=1.031 Sum_probs=114.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033386 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV 81 (120)
Q Consensus 2 ~~~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 81 (120)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++|||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHhHccCCCCeEEEEecCccccCC
Q 033386 82 KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 118 (120)
Q Consensus 82 n~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~afG~ 118 (120)
|+++|++|++||+||++|||+||||||+||+++|||+
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999999999999999999999994
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=7.5e-53 Score=301.29 Aligned_cols=117 Identities=37% Similarity=0.749 Sum_probs=114.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC-CCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEE-
Q 033386 2 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTD-VPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFV- 79 (120)
Q Consensus 2 ~~~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl- 79 (120)
|+ +||++||||+|++|+++||+|||++||||||++++++ +|.|||+||+||+++||+||+.+||+||+|+++++|||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 45 8999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCchHHHHHhHccCCCCeEEEEecCccccCCC
Q 033386 80 FVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWS 119 (120)
Q Consensus 80 ~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~afG~~ 119 (120)
||||++|++|++||+||++|||+||||||+||+++|||+.
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~~ 127 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMK 127 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHHC
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCCc
Confidence 9999999999999999999999999999999999999964
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=3.4e-48 Score=270.02 Aligned_cols=110 Identities=58% Similarity=1.025 Sum_probs=107.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc
Q 033386 3 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK 82 (120)
Q Consensus 3 ~~~fk~~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 82 (120)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 83 NTLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 83 ~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
|++|++|++||+||++|||+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=9.2e-36 Score=201.37 Aligned_cols=86 Identities=22% Similarity=0.433 Sum_probs=81.1
Q ss_pred eEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCCCchHHHHHhHccCCCCeEEEE
Q 033386 31 PVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTL-PPTGALMSAIYEENKDEDGFLYMT 109 (120)
Q Consensus 31 pVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd~DGfLyi~ 109 (120)
.|+|.-.+.+++|.|+++||+||+++||++|+.+||+||+|+++++|||||||++ |++|++||+||++|| +||||||+
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~ 83 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH 83 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence 4666556678999999999999999999999999999999999999999999986 899999999999999 99999999
Q ss_pred ecCccccC
Q 033386 110 YSGENTFG 117 (120)
Q Consensus 110 Ys~~~afG 117 (120)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=1.7e-34 Score=196.87 Aligned_cols=85 Identities=19% Similarity=0.369 Sum_probs=79.6
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC-CCCCCCchHHHHHhHccCCCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-~~p~~~~~~~~lY~~~kd~DGf 105 (120)
|+||+|++++. +++|.|+|+||+||+++||++|+.+||+||+++ +||||||| .+|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999887 469999999999999999999999999999998 99999999 569999999999999998 999
Q ss_pred EEEEecCccccC
Q 033386 106 LYMTYSGENTFG 117 (120)
Q Consensus 106 Lyi~Ys~~~afG 117 (120)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-33 Score=189.97 Aligned_cols=85 Identities=13% Similarity=0.369 Sum_probs=67.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCCCchHHHHHhHccCCCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTL-PPTGALMSAIYEENKDEDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd~DGf 105 (120)
|.||-|-. .+.+++|+|+++||+||+++||++|+.+||+||++ ++|||||||++ |++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 34544444 45579999999999999999999999999999999 69999999985 999999999999999 7999
Q ss_pred EEEEecCccccC
Q 033386 106 LYMTYSGENTFG 117 (120)
Q Consensus 106 Lyi~Ys~~~afG 117 (120)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.73 E-value=0.013 Score=46.29 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCC-CCCCCccceEEecC---CCchHhHHHHHHHHhC-CCCCceEEEEEcCC
Q 033386 10 HPLERRLAESARIREKYPDRIPVIVEKAEKT-DVPDIDKKKYLVPA---DLSVGQFVYVVRKRIK-LSAEKAIFVFVKNT 84 (120)
Q Consensus 10 ~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~ 84 (120)
+.|++=..-..++....+.+|||-|-..... ..+.+. -.++. ..|++++..- +..+. +-++.+..+++.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 3444433444555555578999999765432 222111 11121 2277776410 22222 22344468889998
Q ss_pred CCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 85 LPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 85 ~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
-|+.++.|..||++++-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.37 E-value=0.051 Score=42.41 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=49.9
Q ss_pred CeeeEEEEecCCCCCCCCccceEEe---cCCCchHhHHHHHHHHhC--CC---CCceEEEEEcCCCCCCCchHHHHHhHc
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLV---PADLSVGQFVYVVRKRIK--LS---AEKAIFVFVKNTLPPTGALMSAIYEEN 99 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv---p~~~tv~~~~~~lRk~l~--l~---~~~slfl~Vn~~~p~~~~~~~~lY~~~ 99 (120)
.+|||.|-... ++-|.++..-=-+ ....|++++... .+. .+ ......+++.+.-++.++.|.+||+++
T Consensus 183 r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l 258 (275)
T 4gdk_B 183 RYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKE---VCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHL 258 (275)
T ss_dssp SSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHH---HCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHS
T ss_pred ccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHH---hcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhc
Confidence 67999996432 1222222100001 123577776544 332 11 113456777888899999999999999
Q ss_pred cCCCCeEEEEecC
Q 033386 100 KDEDGFLYMTYSG 112 (120)
Q Consensus 100 kd~DGfLyi~Ys~ 112 (120)
.-.||||||+-.-
T Consensus 259 ~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 259 SYPDNFLHISIIP 271 (275)
T ss_dssp CCTTSCEEEEEEE
T ss_pred cCCCceEEEEEEe
Confidence 9999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=95.04 E-value=0.015 Score=45.35 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=48.4
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEec---CCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCC
Q 033386 26 YPDRIPVIVEKAEKTDVPDIDKKKYLVP---ADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE 102 (120)
Q Consensus 26 yp~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~ 102 (120)
-...|||.|-.... |.++. +|+ ...|++++.. ..+..- .....+++.+.-++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~~---~~iQ~---~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSNY---AVLQP---TVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTTS---CEECC---CCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCCC---CeEec---ccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 45789999975432 22211 233 3678777654 333210 12334777888889999999999999999
Q ss_pred CCeEEEE
Q 033386 103 DGFLYMT 109 (120)
Q Consensus 103 DGfLyi~ 109 (120)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999996
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.61 E-value=0.22 Score=32.35 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=38.8
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHH
Q 033386 47 KKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMS 93 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~ 93 (120)
.-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-..+++++.
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~ 67 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQ 67 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChh
Confidence 36799999999999999999999999999998888876444444443
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.02 E-value=2 Score=25.94 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=42.1
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEe
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Y 110 (120)
..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++- -+ ++..|++..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~ 74 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQ 74 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEE
Confidence 356799999999999999999999987655544 565556777888751 11 233666654
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.99 E-value=4.2 Score=24.80 Aligned_cols=75 Identities=8% Similarity=0.059 Sum_probs=50.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGf 105 (120)
|..+-|.|..... +...+-|+.+.||+++...|.++.++++++- -|+.++.....+.+|++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDG------GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTT------EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCCC------CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence 4566777754321 1224578999999999999999999987654 344566666677788765 22 3346
Q ss_pred EEEEecC
Q 033386 106 LYMTYSG 112 (120)
Q Consensus 106 Lyi~Ys~ 112 (120)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7776543
No 16
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=84.89 E-value=2.9 Score=25.93 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-.. ++ ....|.|..+.+++.++....++.++++++--|+| ++.-...++|.+++
T Consensus 5 ~~~i~ikV~~~~-g~----~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKE-KH----QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSS-TT----CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred CCEEEEEEEeCC-CC----EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 456666664221 11 12468999999999999999999999988655666 55545667788887
No 17
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.41 E-value=3.5 Score=26.51 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEc---CC-CCCCCchHHHHHhHccCCCCeEEEE
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK---NT-LPPTGALMSAIYEENKDEDGFLYMT 109 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~~-~p~~~~~~~~lY~~~kd~DGfLyi~ 109 (120)
.-||.+.+++++...|++||+++++....-|=. +. .+..|+.|...++.=+ +|.|-+.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~ 79 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW 79 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence 359999999999999999999986655455544 22 3678889999998875 4455443
No 18
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=82.87 E-value=7 Score=24.78 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=51.0
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCe
Q 033386 26 YPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGF 105 (120)
Q Consensus 26 yp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGf 105 (120)
-+..+-|.|.-... +...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..
T Consensus 18 ~~~~m~I~Vk~~~g------~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~ 87 (97)
T 1wyw_B 18 EGEYIKLKVIGQDS------SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDV 87 (97)
T ss_dssp -CCEEEEEEECTTC------CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCE
T ss_pred CCCcEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCE
Confidence 35667787753221 12347799999999999999999999987654544 555556777888752 21 2336
Q ss_pred EEEEec
Q 033386 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|++...
T Consensus 88 I~l~~~ 93 (97)
T 1wyw_B 88 IEVYQE 93 (97)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 776654
No 19
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.84 E-value=4 Score=26.91 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=43.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|..+.||++|...|..+-++++++-. |..+++....+.+|++ |.-. ++..|.+.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQr-Li~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIV-LKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 35789999999999999999999877643 3445665567778887 3322 3347888873
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.26 E-value=3.4 Score=25.43 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=41.0
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 52 VPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .-+ ++..|++....
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~gk~L~d~~tL~~~--~i~-~g~~i~l~~~~ 82 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQ-RLFYRGKQLENGYTLFDY--DVG-LNDIIQLLVRP 82 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTE-EEEETTEECCSSSBHHHH--TCC-TTCEEEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE-EEEECCeECCCCCCHHHC--CCC-CCCEEEEEEeC
Confidence 8999999999999999999987654 344466665677788775 111 34477776643
No 21
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=81.90 E-value=8 Score=25.05 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=53.0
Q ss_pred HHHHhCCCeeeEEEEecCCCCCCCCccceEEecC-CCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHc
Q 033386 21 RIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPA-DLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEEN 99 (120)
Q Consensus 21 ~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~-~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~ 99 (120)
....++|.-|.|.|.... .+.=+...+-|+. +.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~---~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y---- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPN---ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY---- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTT---CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT----
T ss_pred HHHHhCCCcEEEEEEecc---cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC----
Confidence 345678988998885431 0000123467897 99999999999999999876433 33466665566666543
Q ss_pred cC-CCCeEEEEec
Q 033386 100 KD-EDGFLYMTYS 111 (120)
Q Consensus 100 kd-~DGfLyi~Ys 111 (120)
.- ++..|+|...
T Consensus 91 ~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 NVGAGEILTLSLR 103 (111)
T ss_dssp TCSSSCEEEEECS
T ss_pred CCCCCCEEEEEEE
Confidence 22 3446776653
No 22
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=81.64 E-value=4.7 Score=24.85 Aligned_cols=75 Identities=13% Similarity=0.292 Sum_probs=49.8
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeE
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFL 106 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfL 106 (120)
|..+-|.|.-... +...+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLDS------QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETTC------CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCCC------CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCeECCCCCCHHHc----CCCCcEE
Confidence 5666777744321 11235789999999999999999999876543 34466666667788763 2224466
Q ss_pred EEEecC
Q 033386 107 YMTYSG 112 (120)
Q Consensus 107 yi~Ys~ 112 (120)
++....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 666553
No 23
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.11 E-value=9.8 Score=25.31 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-... ....|.|..+.+++.++....++.++++.+--|+| ++.-...+.|..+|
T Consensus 24 ~~~I~IkVk~~~g------~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADG------AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTS------CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3566677743221 22468999999999999999999999988666666 44445567888887
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.50 E-value=1.8 Score=26.13 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=42.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- .++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 4679999999999999999999987653 344577666667777763 11 13447777654
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=80.46 E-value=5.3 Score=24.46 Aligned_cols=62 Identities=16% Similarity=0.352 Sum_probs=43.6
Q ss_pred CCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 26 YPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 26 yp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
-|..+.|.|...... ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~g~------~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQ------TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETTSC------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCCCC------EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCcHHH
Confidence 467778888543211 1235789999999999999999999876543 4446666666777766
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=80.27 E-value=3.8 Score=25.45 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=42.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 4568999999999999999999987754444 4666556777887752 22 34478777653
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=80.07 E-value=2.4 Score=24.91 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=40.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998765 4455566655566676553 22 3446666543
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.21 E-value=2.4 Score=24.87 Aligned_cols=58 Identities=7% Similarity=0.075 Sum_probs=40.3
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998765 4444566554556676543 22 3446766543
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=78.55 E-value=1.7 Score=26.31 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=42.3
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|.++.++++++ .-|+.++.....+.+|++. .-+ ++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~~--~i~-~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIH-NHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTTT--TCC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHHC--CCC-CCCEEEEEEec
Confidence 456899999999999999999998875 4445576665666677663 112 34477776543
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.32 E-value=2.6 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=40.3
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
..+-|.|.... +. ...+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++
T Consensus 6 ~~m~i~vk~~~-g~-----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQ-GR-----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETT-SC-----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred CcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 45667675322 11 1245789999999999999999999876433 3446655555667765
No 31
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=77.24 E-value=2.5 Score=29.12 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=40.0
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCC-ceEEEEEc--C-C----CCCCCchHHHHHhHccC
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAE-KAIFVFVK--N-T----LPPTGALMSAIYEENKD 101 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn--~-~----~p~~~~~~~~lY~~~kd 101 (120)
.-|.|..++|+++|...|-+.++++++ ..++..++ | + ++.++.+|+..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 458999999999999999999999864 67777776 3 2 23445667666665533
No 32
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=77.10 E-value=5.8 Score=25.38 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-.. + +.-.|.|..+.+++.++....++.++++++--|+|=+..+ ..++|.+++
T Consensus 3 ~~~i~ikVk~~~-g-----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 3 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 356666664211 1 2356899999999999999999999998766666644444 445565554
No 33
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=76.85 E-value=5.8 Score=24.63 Aligned_cols=56 Identities=5% Similarity=-0.051 Sum_probs=39.4
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCCCchHHHHHhHccCCCCeEEEE
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTL-PPTGALMSAIYEENKDEDGFLYMT 109 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd~DGfLyi~ 109 (120)
.-|+.+.||+++...|..+.++++++- -|+.++.. ...+.+|++.= -+ ++..|++.
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv 81 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQ-TLIVDGIVILREDLTVEQCQ--IV-PTSDIQLE 81 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCCSSSBHHHHT--CC-TTSCEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEEecCCcCCHHHcC--CC-CCCEEEEE
Confidence 468999999999999999999987653 34446655 66777887641 11 33356654
No 34
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=76.82 E-value=12 Score=23.89 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeE
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFL 106 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfL 106 (120)
+..+-|.|.... + +..+-|+.+.||+++...|.++.++++++ .-|+.++.....+.+|++. .-+ ++..|
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~y--gI~-~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTV 88 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHH--TCC-TTCEE
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHC--CCC-CCCEE
Confidence 456777775432 1 23467899999999999999999998764 3444566666677788775 111 33467
Q ss_pred EEEecC
Q 033386 107 YMTYSG 112 (120)
Q Consensus 107 yi~Ys~ 112 (120)
++....
T Consensus 89 ~l~~r~ 94 (100)
T 1yqb_A 89 HLVIKR 94 (100)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 776554
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=75.43 E-value=3.8 Score=24.57 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=40.9
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEe
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .= ++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~----~i~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY----GLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 4579999999999999999999987754 444566655667777763 22 344666654
No 36
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.41 E-value=7.7 Score=24.88 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=48.9
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCC-CeE
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDED-GFL 106 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~D-GfL 106 (120)
..+-|.|.... . +..+-|+.+.||++|...|..+.++++++ .-|+.++.....+.+|+++ .-.| ..|
T Consensus 16 ~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSS-C------EEEEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEE
T ss_pred ceEEEEEEeCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEE
Confidence 45667674322 1 23467899999999999999999998764 4445566666667788765 2233 367
Q ss_pred EEEecC
Q 033386 107 YMTYSG 112 (120)
Q Consensus 107 yi~Ys~ 112 (120)
+|....
T Consensus 84 ~l~~~~ 89 (106)
T 1wx7_A 84 HLVIKR 89 (106)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 776543
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=75.02 E-value=6.2 Score=24.82 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=46.6
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGf 105 (120)
+..+.|.|.. . +...+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..
T Consensus 17 ~~~m~I~Vk~-g-------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA-Q-------ELHTFEVTGQETVAQIKAHVASLEGIAPEDQV-VLLAGAPLEDEATLGQC----GVEALTT 83 (93)
T ss_dssp ---CEEEEES-S-------SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCE-EEETTEECCTTSBHHHH----TCCSSCE
T ss_pred CCcEEEEEEC-C-------CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEE-EEECCEECCCCCcHHHC----CCCCCCE
Confidence 4556777754 1 22346789999999999999999999876543 44466655677788765 22 3346
Q ss_pred EEEEe
Q 033386 106 LYMTY 110 (120)
Q Consensus 106 Lyi~Y 110 (120)
|++..
T Consensus 84 I~lv~ 88 (93)
T 2l7r_A 84 LEVAG 88 (93)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 38
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=74.63 E-value=4.4 Score=23.92 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=39.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEe
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. +- ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHE-EEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 4578999999999999999999987653 344566655566676553 22 334666654
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.86 E-value=2.9 Score=25.50 Aligned_cols=58 Identities=5% Similarity=-0.018 Sum_probs=40.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEe
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Y 110 (120)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 4579999999999999999999987643 344466666667777764 121 344666643
No 40
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=73.78 E-value=3.6 Score=25.66 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=43.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.+-|+.+.||++|...|.++.+++++. .-|+.++.....+.+|+++ .-+ ++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CCC-CCCEEEEEEEc
Confidence 456899999999999999999998765 4455577666677777764 112 34477777643
No 41
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=72.80 E-value=7.1 Score=24.73 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=48.8
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCC-chHHHHHhHccCCCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTG-ALMSAIYEENKDEDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~-~~~~~lY~~~kd~DGf 105 (120)
+..+.|.|.... . ....-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++.= -+ ++..
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~yg--I~-~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEYG--IT-EFSE 81 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHHT--CC-TTEE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHCC--CC-CCCE
Confidence 456677775422 1 234569999999999999999999987653 344566555556 7887641 11 3446
Q ss_pred EEEEecC
Q 033386 106 LYMTYSG 112 (120)
Q Consensus 106 Lyi~Ys~ 112 (120)
|+|....
T Consensus 82 l~lv~r~ 88 (94)
T 2kan_A 82 IVVFLKS 88 (94)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7776543
No 42
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=72.32 E-value=10 Score=23.46 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=34.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHH
Confidence 4569999999999999999999987653 34446666666777776
No 43
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=72.17 E-value=11 Score=24.66 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.4
Q ss_pred hCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 25 KYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 25 kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
.-+++|-|.|.-..+ + ....|.|..+.+++.++..-.++.+++.+.--|+| ++.-..+++|..+|
T Consensus 21 ~~~~~I~LkV~~~dg-~----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEK-H----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp CSCSEEEEEEEESSS-S----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred CCCCeEEEEEEcCCC-C----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 345667666643211 1 12468999999999999999999999988655665 55555667788877
No 44
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=72.17 E-value=17 Score=23.58 Aligned_cols=85 Identities=7% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHHhCCCeeeEEEEecCCCC--CCCCccce--EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHh
Q 033386 22 IREKYPDRIPVIVEKAEKTD--VPDIDKKK--YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYE 97 (120)
Q Consensus 22 i~~kyp~~ipVIvE~~~~~~--~p~L~k~K--flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~ 97 (120)
..+.+|..|.|.|....... -.-|..+. +-|+.+.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC--
Confidence 56678999999986532111 11243333 5689999999999999999999876533 34466655667788764
Q ss_pred HccC-CCCeEEEEec
Q 033386 98 ENKD-EDGFLYMTYS 111 (120)
Q Consensus 98 ~~kd-~DGfLyi~Ys 111 (120)
.- ++..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3346777654
No 45
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=71.79 E-value=12 Score=24.49 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=50.5
Q ss_pred HHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhH
Q 033386 19 SARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEE 98 (120)
Q Consensus 19 ~~~i~~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~ 98 (120)
+..+....|.+|-|.|.-... ++..+-|.++.||++|...|-.+.++++++-.-.| ++.....+.+|+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~G------kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRLG------KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTTS------CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCCC------CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 445556678888899954221 23446799999999999999999999987655555 666666677774 3
Q ss_pred ccCCCC-eEEEEe
Q 033386 99 NKDEDG-FLYMTY 110 (120)
Q Consensus 99 ~kd~DG-fLyi~Y 110 (120)
|.=.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 433333 565555
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=71.41 E-value=4.6 Score=25.44 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=41.8
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEecC
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys~ 112 (120)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHHc----CCCCCCEEEEEEeC
Confidence 456889999999999999999998765 3444566655556677653 22 34577776654
No 47
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=70.97 E-value=3.6 Score=25.61 Aligned_cols=59 Identities=5% Similarity=-0.007 Sum_probs=41.4
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~--~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KIL-GGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTTT--TCC-TTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHHc--CCC-CCCEEEEEEE
Confidence 35688999999999999999999876543 34466666667777764 111 3446777654
No 48
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=69.16 E-value=4.9 Score=23.95 Aligned_cols=56 Identities=5% Similarity=0.009 Sum_probs=38.2
Q ss_pred EE-ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEe
Q 033386 50 YL-VPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTY 110 (120)
Q Consensus 50 fl-vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (120)
+- |+.+.||+++...|..+.++++++-- |+.++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qr-L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQR-LFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 89999999999999999999876543 34466555556666543 22 334566654
No 49
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.60 E-value=7.9 Score=24.16 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCC-e
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDG-F 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-f 105 (120)
+..+-|.|... + +...+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .-.|| .
T Consensus 15 ~~~m~i~Vk~~--g-----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~ 82 (96)
T 1wx8_A 15 SRIIRVSVKTP--Q-----DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGST 82 (96)
T ss_dssp SCEEEEEEECS--S-----SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEE
T ss_pred CCcEEEEEEEC--C-----eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCE
Confidence 35566777543 1 1234678999999999999999999987653333 356555667788773 33344 5
Q ss_pred EEEEec
Q 033386 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|++...
T Consensus 83 i~l~~~ 88 (96)
T 1wx8_A 83 VHVVVR 88 (96)
T ss_dssp EECCBC
T ss_pred EEEEEe
Confidence 555443
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.31 E-value=8.4 Score=25.33 Aligned_cols=46 Identities=4% Similarity=0.039 Sum_probs=36.5
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
...-|+.+.||++|...|-.+.++++.+- -|..++.....+.+|++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 34568999999999999999999987654 34456777777888876
No 51
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.10 E-value=5.9 Score=25.71 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEE
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVF 80 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~ 80 (120)
-.||.+.++.++..-|+.||+++ +.-++.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 46999999999999999999994 3334444
No 52
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=67.78 E-value=13 Score=23.35 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=32.1
Q ss_pred ecCCCchHhHHHHH-HHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 52 VPADLSVGQFVYVV-RKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 52 vp~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
++.+.||++|...| ..+-++++++-- |+.++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEE-EEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEE-EEECCEECcCcCCHHHc
Confidence 34899999999999 777788876543 44466666778888864
No 53
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.14 E-value=5.7 Score=25.15 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=46.3
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCC-CCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGf 105 (120)
+..+-|.|..... +...+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|+++ .=. +..
T Consensus 20 ~~~m~I~Vk~~~g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLTG------KTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETTC------CEEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 3556677754321 1234568999999999999999999987654 344466666667777653 223 335
Q ss_pred EEEEe
Q 033386 106 LYMTY 110 (120)
Q Consensus 106 Lyi~Y 110 (120)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66543
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.62 E-value=5.3 Score=24.77 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=37.6
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCC-eEEEEe
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDG-FLYMTY 110 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-fLyi~Y 110 (120)
.-|+.+.||+++...|....+++++.- -|+.++.....+.+|+++ .-.|| .|++..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 468999999999999999999987543 333466555556666543 22333 566543
No 55
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=66.54 E-value=6.2 Score=24.47 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=38.9
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 3568999999999999999999987643 344466555556666553 22 2336666543
No 56
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.35 E-value=10 Score=23.60 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=46.5
Q ss_pred CeeeEEEEecCCCCCCCCccceEE--ecCCCchHhHHHHHHHHh--CCCCCceEEEEEcCCCCCCCchHHHHHhHccCCC
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYL--VPADLSVGQFVYVVRKRI--KLSAEKAIFVFVKNTLPPTGALMSAIYEENKDED 103 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kfl--vp~~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~D 103 (120)
..+.|.|...... ...+- |+.+.||++|...|.... ++++++-- |+.++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~~~------~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPNQR------HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSSSS------CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCCCC------eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CC
Confidence 4566777543211 11344 559999999999999998 88765433 3346666667778887532122 33
Q ss_pred CeEEEEec
Q 033386 104 GFLYMTYS 111 (120)
Q Consensus 104 GfLyi~Ys 111 (120)
..|+|...
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 35666543
No 57
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=66.18 E-value=23 Score=22.76 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=43.6
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEE-EEcC--C--CCCCCchHH---HHHhHccCCCCeEEE
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFV-FVKN--T--LPPTGALMS---AIYEENKDEDGFLYM 108 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~--~--~p~~~~~~~---~lY~~~kd~DGfLyi 108 (120)
..+.||.+.++.++..-||.+.++.+++.+-+ |++. - ..+.|+.|. ++|+-.+|..=.||+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 45789999999999999999999988887766 4543 1 357777665 456666544333443
No 58
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=65.98 E-value=24 Score=23.80 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=45.4
Q ss_pred EecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC------CCCeEEEEecCcccc
Q 033386 51 LVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD------EDGFLYMTYSGENTF 116 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd------~DGfLyi~Ys~~~af 116 (120)
-|..+.||+++...|..+.++++.+-- |+.+++....+.+|++ |.-. + .+--|++......+|
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCB
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCce
Confidence 489999999999999999999876533 3356776777789987 3322 1 244688888754444
No 59
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.43 E-value=17 Score=23.27 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=42.1
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEecCc
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- ++..|+|.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 4679999999999999999999987654333 466655666677653 22 344777766543
No 60
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=64.03 E-value=28 Score=22.94 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=43.0
Q ss_pred eeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 29 RIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 29 ~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
++-|.||-...+. ..-.+-|..+.||+++..-|-.+.+++++.-= ++.++.+...+.+|++
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 4456776544222 22346789999999999999999999986544 4456677667778765
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.36 E-value=22 Score=22.74 Aligned_cols=55 Identities=4% Similarity=-0.034 Sum_probs=36.7
Q ss_pred CCchHhHHHHHHHHh--CCCCCceEEEEEcCCCCCCCchHHHHHhHccCC-CCeEEEEecCc
Q 033386 55 DLSVGQFVYVVRKRI--KLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGE 113 (120)
Q Consensus 55 ~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGfLyi~Ys~~ 113 (120)
+.||++|...|..+. ++++++..=|+.++.....+.+|++. .-. +-.|++.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY----GIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH----TCCTTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc----CCCCCCEEEEEeCCC
Confidence 599999999999999 88877612334455555667788765 222 33666655443
No 62
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=62.87 E-value=14 Score=22.15 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=36.0
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
-.|.|..+.+++.++....++.++++++--|+|=+..+ .+++|.+++
T Consensus 14 v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 14 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 46899999999999999999999998876677754444 334455443
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=62.77 E-value=4.7 Score=26.00 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
.-.|-|.|.. .+... .+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++.
T Consensus 26 ~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKILKDDQTVESY 86 (101)
T ss_dssp ---CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCE-EETTEECCTTSBTTTT
T ss_pred CcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEE-EECCEECCCcCcHHHC
Confidence 3456677754 22222 245889999999999999999998764333 3366666667777653
No 64
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=62.67 E-value=6.9 Score=25.94 Aligned_cols=47 Identities=6% Similarity=0.088 Sum_probs=36.0
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
..|.|..+.++..++....++.++++++--|+|-+..+ ..+.|..+|
T Consensus 43 i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 43 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHc
Confidence 46899999999999999999999998866677644444 445555554
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=62.37 E-value=17 Score=22.60 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=39.8
Q ss_pred EecCCCchHhHHHHHHHHhCCCCCceEEEE--EcCCCCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 51 LVPADLSVGQFVYVVRKRIKLSAEKAIFVF--VKNTLPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~l~l~~~~slfl~--Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
-|+.+.||++|...|..+.++++++--.+. .++.....+.+|+++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468899999999999999999876433330 455555667788774 112 234666655443
No 66
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=62.24 E-value=10 Score=24.60 Aligned_cols=58 Identities=7% Similarity=0.089 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987653 344466555556676653 22 3446666543
No 67
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=61.28 E-value=8.1 Score=25.17 Aligned_cols=58 Identities=7% Similarity=0.092 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEe
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Y 110 (120)
.+-|+.+.||++|...|.++.+++++.- -|+.++.....+.+|+++- -+ ++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~g--I~-~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYN--IQ-KESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTTT--CC-TTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHCC--CC-CCCEEEEEE
Confidence 4579999999999999999999987653 4445666656666776631 11 344666654
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=60.66 E-value=8.1 Score=24.75 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCe
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGF 105 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGf 105 (120)
+..+-|.|... + +...+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|++. .- ++..
T Consensus 23 ~~~m~I~Vk~~--g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--K-----EKEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--S-----CEEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--C-----cEEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCE
Confidence 67788888653 1 123467999999999999999999998765 3344466555566676653 33 3346
Q ss_pred EEEEec
Q 033386 106 LYMTYS 111 (120)
Q Consensus 106 Lyi~Ys 111 (120)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666554
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=60.47 E-value=27 Score=22.96 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qr-L~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 45688999999999999999999876544 44466544556676653 22 3446777654
No 70
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=59.26 E-value=8 Score=23.02 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=18.2
Q ss_pred HHHHHHhCCCCCceEEEEEcC
Q 033386 63 YVVRKRIKLSAEKAIFVFVKN 83 (120)
Q Consensus 63 ~~lRk~l~l~~~~slfl~Vn~ 83 (120)
.-+|++|++.+++.|.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 457999999999999998864
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=58.73 E-value=7.2 Score=25.66 Aligned_cols=59 Identities=7% Similarity=0.056 Sum_probs=40.7
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEecCc
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..|++.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 458899999999999999999987653 344566555566676553 22 344677766543
No 72
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=58.38 E-value=6.1 Score=25.56 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=41.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|+++ .-+ ++..|++..+..
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~ 75 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIK-LIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQK 75 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCE-EEETTEECCTTSBTTTT--TCC-TTCEEEEECCC-
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEE-EEECCEECCCcCCHHHc--CCC-CCCEEEEEEcCC
Confidence 4588999999999999999999876543 44466666667777764 122 344777776543
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=58.12 E-value=13 Score=25.27 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=40.9
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEE-EEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFV-FVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
+-|+.+.||+++...|....++++++--.+ |-++.....+.+|++. .- ++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y----~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ----GLGPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG----TCCTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc----CCCCCCEEEEEcc
Confidence 468899999999999999999998654444 5255555667777653 22 3446666655
No 74
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.36 E-value=12 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=26.4
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCC-ceEEEEE
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAE-KAIFVFV 81 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~-~slfl~V 81 (120)
--+|.++||++|...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4689999999999999999999864 5666653
No 75
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=57.05 E-value=34 Score=21.70 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=42.4
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-.. + +...|.|..+.+++.++..+.++.++++++--|+|=+..+ ..+.|..++
T Consensus 5 ~~~i~ikVk~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 5 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 356666664221 1 2346899999999999999999999998766666654444 444555554
No 76
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=56.87 E-value=28 Score=20.66 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHH---hCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-C
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKR---IKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-E 102 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~ 102 (120)
|..+-|.|...... ...+-|+.+.||+++...|..+ -++++++ .-|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHH----cCCCC
Confidence 56677878654221 1235689999999999999998 4576554 334456665566667765 333 3
Q ss_pred CCeEEEEecCcc
Q 033386 103 DGFLYMTYSGEN 114 (120)
Q Consensus 103 DGfLyi~Ys~~~ 114 (120)
+..|++..+...
T Consensus 72 g~~i~l~~~~~~ 83 (85)
T 2wyq_A 72 KNFVVVMVTKTK 83 (85)
T ss_dssp TSEEEEEEC---
T ss_pred CCEEEEEEcCCC
Confidence 457887765543
No 77
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.45 E-value=13 Score=24.92 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=40.5
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCC-eEEEEecC
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDG-FLYMTYSG 112 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-fLyi~Ys~ 112 (120)
.+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|++ |.-.|| .|+|....
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEecc
Confidence 4578999999999999999999987653 34446655556667755 333344 66666543
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.41 E-value=11 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=37.7
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCC-chHHHHHhHccCCCCeEEEEe
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTG-ALMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~-~~~~~lY~~~kd~DGfLyi~Y 110 (120)
.-|+.+.||++|...|..+.++++++-- |+.++.....+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEE
Confidence 4589999999999999999999876433 34455544444 477764 122 233566654
No 79
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=61.21 E-value=2.3 Score=25.26 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=31.7
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNC 59 (76)
Confidence 457889999999999999998887653333 355544555666553
No 80
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=54.46 E-value=11 Score=21.46 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHHHHhCCCCCceEEEEEcC
Q 033386 63 YVVRKRIKLSAEKAIFVFVKN 83 (120)
Q Consensus 63 ~~lRk~l~l~~~~slfl~Vn~ 83 (120)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999998864
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=53.41 E-value=11 Score=25.03 Aligned_cols=58 Identities=7% Similarity=0.107 Sum_probs=39.2
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.+++++.--.+ .++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 3568999999999999999999987754333 455544556666543 22 3346666554
No 82
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=53.02 E-value=8.8 Score=23.69 Aligned_cols=49 Identities=6% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCCceEEEEEcC-C--C-CCCC---chHHHHHhHccCCCCeEEEEecCccccC
Q 033386 63 YVVRKRIKLSAEKAIFVFVKN-T--L-PPTG---ALMSAIYEENKDEDGFLYMTYSGENTFG 117 (120)
Q Consensus 63 ~~lRk~l~l~~~~slfl~Vn~-~--~-p~~~---~~~~~lY~~~kd~DGfLyi~Ys~~~afG 117 (120)
.-+|++|++.+++.+.+.+.+ . + |... .++.++...+.+ | + +..+..||
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg 74 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWG 74 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC---------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccC
Confidence 457899999999999998864 3 2 5443 478889888853 3 2 23455676
No 83
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.16 E-value=23 Score=21.75 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCC-----CchHhHHHHHHHHhCCCCCceEEEEEcCCCCCC-CchHHHHHhHccC
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPAD-----LSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT-GALMSAIYEENKD 101 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~-----~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~-~~~~~~lY~~~kd 101 (120)
..|-|.|.. ... ...+-|+.+ .||++|...|..+.+++++.-- |+.++..... +.+|+++ .=
T Consensus 6 ~~~~v~Vk~-~~~------~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTH-SNE------KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEEC-SSS------EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEE-CCE------EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC----CC
Confidence 456677754 211 123457774 9999999999999999876433 3345554333 5578774 22
Q ss_pred CCC-eEEEEecCc
Q 033386 102 EDG-FLYMTYSGE 113 (120)
Q Consensus 102 ~DG-fLyi~Ys~~ 113 (120)
.|| .|+|.-+..
T Consensus 74 ~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 74 QDGCRVMLIGKKN 86 (92)
T ss_dssp CSSEEEEEESCCS
T ss_pred CCCCEEEEEecCC
Confidence 233 566654443
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.80 E-value=23 Score=22.94 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=40.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEE-cCCCCCCCchHHHHHhHccCCCCeEEEEecCcc
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGEN 114 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~V-n~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~ 114 (120)
.-|+.+.||++|...|..+-++++++--.++. .+. ...+.+|+++ .-+ ..-.|+|......
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSSSC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecCCC
Confidence 45889999999999999999998765443432 334 4556678776 122 2246776554443
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=51.01 E-value=48 Score=22.22 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=40.9
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .= ++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~~G~~L~d~~tL~~y----~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGEY----GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEE-EEECCeecCCCCCHHHc----CCCCCCEEEEEEe
Confidence 35689999999999999999999877543 44466655566677653 22 3446777654
No 86
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.91 E-value=12 Score=23.66 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
.+-|+.+.||++|...|..+.++++++--.+ .++... .|.+|+++
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 3568999999999999999999987543222 344443 45577654
No 87
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.12 E-value=18 Score=22.52 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=40.2
Q ss_pred eEEecCCCchHhHHHHHHHH---hCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEecCc
Q 033386 49 KYLVPADLSVGQFVYVVRKR---IKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
.+-|+.+.||+++...|..+ -++++++ .-|+.++.....+.+|++. +- ++..|++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~y----gI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAG-QKLIYAGKILNDDTALKEY----KIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTT-EEEEETTEECCTTSBGGGG----TCCSSSEEEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhh-EEEEECCEECCCcCcHHHC----CCCCCCEEEEEEeCC
Confidence 35688999999999999998 4576654 3344466655666677653 33 344777766543
No 88
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=48.34 E-value=17 Score=24.43 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=42.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-.. + ....|.|..+.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g-----~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEcCC-C-----CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 477777774321 1 1246899999999999999999999998876677744444 334444443
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=48.11 E-value=28 Score=22.01 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+++|-|.|.-.. + ....|.|..+.+++.++....++.+++++.--|+|=+..+ ..+.|..++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHc
Confidence 467777774221 1 2246899999999999999999999998865566544444 444555443
No 90
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=47.40 E-value=33 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc
Q 033386 41 DVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK 82 (120)
Q Consensus 41 ~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 82 (120)
.+|+..-....|..+.+|++++..|-+++++...+- |-+|.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 366777778899999999999999999999985544 44453
No 91
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.27 E-value=49 Score=20.54 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=33.6
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCC-ceEEE
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAE-KAIFV 79 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~-~slfl 79 (120)
..|.|.|..... + .....-|+.+.||+++...|..+.+++++ +.|++
T Consensus 6 ~~v~l~I~~~~~---~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSLN---S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETTS---S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECCC---C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457787754321 1 22445799999999999999999999865 44544
No 92
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=45.98 E-value=17 Score=23.44 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=39.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHh--CCC-CCceEEEEEcCCCCCCCchHHHHHh
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRI--KLS-AEKAIFVFVKNTLPPTGALMSAIYE 97 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l--~l~-~~~slfl~Vn~~~p~~~~~~~~lY~ 97 (120)
+..|.|.|.- .+.... ...+-|+.+.||++|...|..++ ..+ ..+.| +.++.....+.+|++...
T Consensus 21 ~~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 4557777743 222110 11345799999999999999876 333 33443 346666667778887643
No 93
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=44.65 E-value=61 Score=20.90 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=45.3
Q ss_pred CccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCC-CCCCchHHHHHhHccC
Q 033386 45 IDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTL-PPTGALMSAIYEENKD 101 (120)
Q Consensus 45 L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd 101 (120)
|--+..-||++..+..++.+--...+.++..+ -+.-|+-+ ..++++-|++|=+|..
T Consensus 23 lpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 23 LPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp CCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 33366779999999999999999999988765 44556555 7889999999999964
No 94
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=43.49 E-value=16 Score=22.91 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCC
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLS 72 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~ 72 (120)
..||.+.++.+|..-|++|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999874
No 95
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=43.43 E-value=25 Score=24.14 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=40.6
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Qr-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCccccccCCHhHc----CCcccceeeeeec
Confidence 35699999999999999999999886543 33466656667777763 22 3345666544
No 96
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.15 E-value=61 Score=20.47 Aligned_cols=64 Identities=22% Similarity=0.175 Sum_probs=41.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCc-eEEEEEcCC----CCCCCchHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEK-AIFVFVKNT----LPPTGALMSA 94 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~-slfl~Vn~~----~p~~~~~~~~ 94 (120)
++.|.|.|.-.. .+. .....-|+.+.||+++...|..+.++++++ .|++.-++. +...+.+|++
T Consensus 13 ~~~v~l~It~s~-~~~---~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDA---VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CSC---EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CCc---eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 467888775422 110 123457999999999999999999998764 444432232 3355567765
No 97
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=42.70 E-value=5.2 Score=26.79 Aligned_cols=45 Identities=7% Similarity=0.108 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEE-EEECCEECCCCCchhhh
Confidence 4588899999999999998888876433 33455545556666653
No 98
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=42.66 E-value=57 Score=23.08 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=24.9
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCc
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~ 75 (120)
..+.||.+.|+.+|-.+|+.-++.....
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 6789999999999999999999987543
No 99
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=42.47 E-value=64 Score=20.52 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=40.6
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC--CC----CCCCchHHH
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN--TL----PPTGALMSA 94 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~--~~----p~~~~~~~~ 94 (120)
+-|+|.|.-..... .....-|+.+.||++|...|..+-++++++---+|.+. .. ...+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56888885522111 12345799999999999999999999876543344431 22 234456665
No 100
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.46 E-value=41 Score=22.82 Aligned_cols=44 Identities=2% Similarity=-0.065 Sum_probs=34.5
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
.-++.+.||++|...|-...+++++.-- |.-++.....+++|.+
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~ 74 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQ 74 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHH
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHH
Confidence 3588999999999999999998877644 4445655577888875
No 101
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=42.14 E-value=24 Score=22.02 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=30.8
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCC-ceEEEEEc-----CCCCCCCchHH
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAE-KAIFVFVK-----NTLPPTGALMS 93 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn-----~~~p~~~~~~~ 93 (120)
--++.+.||+++..-|..+-+++++ +.|.++-. ..+...+.+|+
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 3589999999999999999999875 44444321 12344555554
No 102
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=41.92 E-value=34 Score=25.85 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=32.4
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCc-hHHHHHhHccCCCCeEEEEecCc
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGA-LMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~-~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
+-|.=..+++..+|...+++. +.+|.+++ ++++..+.|.+-|..|+|+.|+.
T Consensus 34 ~~y~D~~di~~~efy~~~~~~--------------~~~p~TSqps~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 34 EEFCDDGQLDIHRMLDILEKH--------------KGRSYTACPGIDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp CEEECSTTCCHHHHHHHHHTC--------------CSCCEEECCCHHHHHHHHTTCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhC--------------CCCceecCCCHHHHHHHHhcCCcEEEEECCCc
Confidence 445545577888888877643 11333333 45555566655678999998874
No 103
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.51 E-value=25 Score=21.40 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=18.6
Q ss_pred EEEcCCCCCCCchHHHHHhHccC--------CCCeEEEEecCc
Q 033386 79 VFVKNTLPPTGALMSAIYEENKD--------EDGFLYMTYSGE 113 (120)
Q Consensus 79 l~Vn~~~p~~~~~~~~lY~~~kd--------~DGfLyi~Ys~~ 113 (120)
|||.| +-...+.|.+++..|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 44555 43344456666666632 356777777553
No 104
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.44 E-value=22 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCC-CCCCchHHHHHhHccC
Q 033386 72 SAEKAIFVFVKNTL-PPTGALMSAIYEENKD 101 (120)
Q Consensus 72 ~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd 101 (120)
+++..|+|||.|-- +-....|.+++..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 46788999999843 5566688888888864
No 105
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=41.03 E-value=88 Score=22.61 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=42.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCC--ceEEEEEc-CC---CCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAE--KAIFVFVK-NT---LPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~--~slfl~Vn-~~---~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
...++...|+.+|...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. =.+|..|.|-..
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999875 56666554 43 234566777752 234556666554
No 106
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.06 E-value=14 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=22.5
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCC
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLS 72 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~ 72 (120)
...+||.+.++.+|..-|++++++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4568999999999999999999876
No 107
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.66 E-value=38 Score=21.98 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=42.3
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
++|-|.|.-.. + ....|.|..+.++..++....++.++++++--|+|=+..+ ..+.|..+|
T Consensus 23 ~~I~IkVk~~~-g-----~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 23 DHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp CCEEEEEECSS-S-----CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred CeEEEEEECCC-C-----CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 45666664221 1 2346899999999999999999999998866677654444 445555554
No 108
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=38.88 E-value=36 Score=23.79 Aligned_cols=59 Identities=7% Similarity=0.118 Sum_probs=41.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (120)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--~I~-~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG--TCC-TTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc--CCC-CCCEEEEEEE
Confidence 35689999999999999999999887643 44466655667777764 111 3346666654
No 109
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=36.93 E-value=7.2 Score=27.32 Aligned_cols=45 Identities=7% Similarity=0.108 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEEccccCcHHHc
Confidence 4588899999999999999999876543 33455555666777764
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=36.74 E-value=26 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCCchHHHHHhHccCC--------CCeEEEEecCc
Q 033386 78 FVFVKNTLPPTGALMSAIYEENKDE--------DGFLYMTYSGE 113 (120)
Q Consensus 78 fl~Vn~~~p~~~~~~~~lY~~~kd~--------DGfLyi~Ys~~ 113 (120)
-|||+| +....+.|.+++..|... -||-+|.|.+.
T Consensus 41 ~lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 41 TLYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 83 (121)
T ss_dssp EEEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSH
T ss_pred EEEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCH
Confidence 355566 555555677777777542 47777777654
No 111
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.15 E-value=18 Score=23.78 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=43.0
Q ss_pred EecCCCchHhHHHHHHHHhCCCCC--------------ceEEEEEcCCCC-CCCchHHHHHhHccCCCCeEEEEecCccc
Q 033386 51 LVPADLSVGQFVYVVRKRIKLSAE--------------KAIFVFVKNTLP-PTGALMSAIYEENKDEDGFLYMTYSGENT 115 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~l~l~~~--------------~slfl~Vn~~~p-~~~~~~~~lY~~~kd~DGfLyi~Ys~~~a 115 (120)
-|+.+.||+++...|..+.++++. +..-|.-++... ..+.+|++ |.= + ++.+|++.-.....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-ygI-~-~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YGI-R-NRDEVSFIKKLGQK 99 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HTC-C-SSEEEEEEECSCSC
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cCC-C-CCCEEEEEehhccC
Confidence 588999999999999999887652 234454566544 45578887 221 1 34478877666655
Q ss_pred cC
Q 033386 116 FG 117 (120)
Q Consensus 116 fG 117 (120)
.|
T Consensus 100 ~~ 101 (105)
T 1v2y_A 100 SG 101 (105)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 112
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=33.90 E-value=1.1e+02 Score=20.60 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=58.0
Q ss_pred eeeEEEEecCCCCCC-CCccceEE-ecCCCchHhHHHHHHHHhCCCC----------------CceEEEEEc---CC--C
Q 033386 29 RIPVIVEKAEKTDVP-DIDKKKYL-VPADLSVGQFVYVVRKRIKLSA----------------EKAIFVFVK---NT--L 85 (120)
Q Consensus 29 ~ipVIvE~~~~~~~p-~L~k~Kfl-vp~~~tv~~~~~~lRk~l~l~~----------------~~slfl~Vn---~~--~ 85 (120)
-|-++..+++.--.. ...+.+|+ -+.+.||.++...|.-||.|+. ....-+||- +. .
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 456677777642111 22455664 7899999999999998887661 123445553 23 3
Q ss_pred CCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 86 PPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 86 p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
...++++.++-++|=-.+-=|-|-||-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 789999999999995567888888874
No 113
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.78 E-value=40 Score=27.99 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=44.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEc---CCC--CC-CCchHHHHHhHccCCCCeEEEEe
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK---NTL--PP-TGALMSAIYEENKDEDGFLYMTY 110 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~~~--p~-~~~~~~~lY~~~kd~DGfLyi~Y 110 (120)
...|+.+.+++++...|+++++++++..|=||=- +.. .. ++.++.+.+++-.|.| .|+++=
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ~ 216 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQK 216 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEEe
Confidence 4679999999999999999999999988877742 112 23 6678887776554322 555544
No 114
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=33.75 E-value=32 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred hCCCCCceEEEEEcCC-CCCCCchHHHHHhHccC
Q 033386 69 IKLSAEKAIFVFVKNT-LPPTGALMSAIYEENKD 101 (120)
Q Consensus 69 l~l~~~~slfl~Vn~~-~p~~~~~~~~lY~~~kd 101 (120)
+.-.++.-|.|||.|- .+-..+.|.+|+..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 3445688899999985 46677788999988864
No 115
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=33.73 E-value=32 Score=24.89 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=40.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEec
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYS 111 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (120)
.+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .- ++..|+|...
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~Qr-Li~~Gk~L~D~~tL~dy----gI~~gstI~Lvlr 177 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 177 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTCBGGGG----TCCTTCEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEE-EEECCEECCCCCCHHHC----CCCCCCEEEEEEE
Confidence 35689999999999999999999876433 33466655667777763 22 3346666543
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=33.62 E-value=72 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=32.0
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN 83 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 83 (120)
-++.|..+.|+..|...|-++-++++.+-..||=+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 458899999999999999999999998888888774
No 117
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=33.47 E-value=37 Score=22.96 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=45.3
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC------CCCeEEEEecCccccC
Q 033386 52 VPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD------EDGFLYMTYSGENTFG 117 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd------~DGfLyi~Ys~~~afG 117 (120)
|..+.||+++...|..+.++++++--.+| ++.....+.||++. . .++ .+--|++.+...++|.
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~dy-~-I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGEC-G-FTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTTT-T-CCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHHc-C-CCcCcccCCCCCEEEEEEecCCCcc
Confidence 78999999999999999999987643334 56666667777652 1 110 1558999988777665
No 118
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=33.29 E-value=39 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=28.0
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCc
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGA 90 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~ 90 (120)
.-+|+..|++++ -++|+++++.. -+.+|+...+.|+
T Consensus 15 ~ev~~g~Tv~dL----L~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADL----VRAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHH----HHTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHH----HHHcCCCcceE-EEEECCEECCHHH
Confidence 568999999996 46889998887 5889988655554
No 119
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=33.12 E-value=43 Score=22.39 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=46.7
Q ss_pred Ceee--EEEEecCCCCCCCCccc----eE-EecCCCchHhHHHHHHHHhCCCCC----ceEEEEEcC--CC------CCC
Q 033386 28 DRIP--VIVEKAEKTDVPDIDKK----KY-LVPADLSVGQFVYVVRKRIKLSAE----KAIFVFVKN--TL------PPT 88 (120)
Q Consensus 28 ~~ip--VIvE~~~~~~~p~L~k~----Kf-lvp~~~tv~~~~~~lRk~l~l~~~----~slfl~Vn~--~~------p~~ 88 (120)
..+| .|||..... +..+.. -| +||++..+.|++...=.+|+.+.+ ..=-+-|+| -+ +.+
T Consensus 6 ~mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p 83 (105)
T 3tuo_A 6 TMLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAP 83 (105)
T ss_dssp SEEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCT
T ss_pred cceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCc
Confidence 4567 477877532 222221 34 899999999999999999998743 222466776 12 578
Q ss_pred CchHHHHHhH
Q 033386 89 GALMSAIYEE 98 (120)
Q Consensus 89 ~~~~~~lY~~ 98 (120)
+.|+|++-.+
T Consensus 84 ~~TV~d~L~e 93 (105)
T 3tuo_A 84 DATVADMLQD 93 (105)
T ss_dssp TCBHHHHHTT
T ss_pred hhhHHHHHHH
Confidence 8899988654
No 120
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.99 E-value=14 Score=23.91 Aligned_cols=60 Identities=13% Similarity=0.363 Sum_probs=39.1
Q ss_pred EEec-CCCchHhHHHHHHHHhCCCCC-ceEEEEEcCC------------C---CCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 50 YLVP-ADLSVGQFVYVVRKRIKLSAE-KAIFVFVKNT------------L---PPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 50 flvp-~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~~------------~---p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
.-|. .+.||++|...|..+.++++. +.|++ ++. + ...+.+|+++= -+ .+..|||.|..
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g--i~-~G~~L~l~~~~ 95 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLN--LA-HGSMVYLAYEG 95 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTC--CC-TTCEEECCCSS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCC--CC-CCCEEEEEeCC
Confidence 4578 899999999999999998764 44433 322 2 23445666431 11 23378998876
Q ss_pred cc
Q 033386 113 EN 114 (120)
Q Consensus 113 ~~ 114 (120)
+.
T Consensus 96 ~~ 97 (107)
T 1wf9_A 96 ER 97 (107)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 121
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=32.54 E-value=39 Score=19.99 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=25.2
Q ss_pred EEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCc
Q 033386 50 YLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGA 90 (120)
Q Consensus 50 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~ 90 (120)
+-++...|++++.. .|++++. .+.+.||+.+.+.++
T Consensus 18 ~~~~~~~tv~~Ll~----~l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLG----ELEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHH----HTTCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHH----HhCCCCC-CEEEEECCEECCCcc
Confidence 56788889999765 4566654 466889998754444
No 122
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=31.13 E-value=32 Score=22.06 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=44.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceE----EecCCCchHhHHHHH-HHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKY----LVPADLSVGQFVYVV-RKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD 101 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kf----lvp~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd 101 (120)
+..+-|.|.-.. .++| -|+.+.||++|...| ..+-++++++-- |..++.....+.+|++ |+-
T Consensus 17 ~~~m~I~VKtl~--------g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I 83 (98)
T 4a20_A 17 NAAVHLTLKKIQ--------APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKV 83 (98)
T ss_dssp -CCEEEEEEECS--------SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCC
T ss_pred CCCEEEEEEcCC--------CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCc
Confidence 456677775422 2233 246999999999999 776677776543 4446666666777776 332
Q ss_pred --CCCeEEEEec
Q 033386 102 --EDGFLYMTYS 111 (120)
Q Consensus 102 --~DGfLyi~Ys 111 (120)
++.+|++--+
T Consensus 84 ~~~g~ti~lmvs 95 (98)
T 4a20_A 84 TPANSTITVMIK 95 (98)
T ss_dssp BTTBCEEEEEEC
T ss_pred CCCCCEEEEEEe
Confidence 3446666543
No 123
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=31.04 E-value=30 Score=25.85 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=42.7
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
.++|-|-|. . . =....|.|..+.++..++....++.++++..--|+| ++.-...+.|..+|
T Consensus 55 ~e~InLKVk-~-d-----G~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKVS-D-G-----SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CCEEEEEEE-C-S-----SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CCcEEEEEe-c-C-----CCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 356777773 2 1 134679999999999999999999999987766777 44333334454443
No 124
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=30.69 E-value=25 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=22.7
Q ss_pred EecCCCchHhHHHHHHHHhCCCC-CceEEE
Q 033386 51 LVPADLSVGQFVYVVRKRIKLSA-EKAIFV 79 (120)
Q Consensus 51 lvp~~~tv~~~~~~lRk~l~l~~-~~slfl 79 (120)
-|+.+.|++++...|.+.++++. .+++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 37788999999999999999863 344444
No 125
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=30.10 E-value=41 Score=21.65 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCeeeE
Q 033386 14 RRLAESARIREKYPDRIPV 32 (120)
Q Consensus 14 ~R~~e~~~i~~kyp~~ipV 32 (120)
+|+.-+|.++.+||++|-|
T Consensus 41 ~RkLIYQ~~~~kfp~~i~v 59 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGIHV 59 (87)
T ss_dssp HHHHHHHHHHHHSSSSEEE
T ss_pred HHHHHHHHHHHhcCCceEE
Confidence 4666999999999999843
No 126
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=29.34 E-value=43 Score=20.34 Aligned_cols=58 Identities=3% Similarity=0.015 Sum_probs=35.2
Q ss_pred ecCCCchHhHHHHHHHHhCCCCCceEEEEEc--CCCC-C-CCchHHHHHhHccCCCCeEEEEecC
Q 033386 52 VPADLSVGQFVYVVRKRIKLSAEKAIFVFVK--NTLP-P-TGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 52 vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn--~~~p-~-~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
++.+.||+++...|..+.+++++.--.+|-. ..+. . .+.+++++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 6789999999999999999875432223321 1231 2 455666531 11 23367776654
No 127
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.91 E-value=80 Score=20.52 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=27.6
Q ss_pred CCCCceEEEEEcCC-C-CCC---CchHHHHHhHcc-C----CCCeEEEEecCcc
Q 033386 71 LSAEKAIFVFVKNT-L-PPT---GALMSAIYEENK-D----EDGFLYMTYSGEN 114 (120)
Q Consensus 71 l~~~~slfl~Vn~~-~-p~~---~~~~~~lY~~~k-d----~DGfLyi~Ys~~~ 114 (120)
.+|++++ |||+|- . ... ...|.+|+..|. . .-||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 778773 1 121 124778999995 2 3588888887653
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=28.80 E-value=78 Score=22.27 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCC-CCCCchHHHHHhHccC
Q 033386 72 SAEKAIFVFVKNTL-PPTGALMSAIYEENKD 101 (120)
Q Consensus 72 ~~~~slfl~Vn~~~-p~~~~~~~~lY~~~kd 101 (120)
+++..+.|||.|-- +-....|.++|..|..
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~ 72 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 72 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCC
Confidence 45677889999853 5566689999999864
No 129
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=28.32 E-value=47 Score=24.33 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=37.5
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN 83 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 83 (120)
.++|-|-|. . . =....|.|..+.++..++....+|.+++..+--|+|=+.
T Consensus 27 ~~~I~LkV~-~-~-----g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~ 76 (200)
T 3pge_A 27 ETHINLKVS-D-G-----SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 76 (200)
T ss_dssp CCCEEEEEE-C-S-----SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTE
T ss_pred CCeEEEEEe-c-C-----CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCE
Confidence 356666662 1 1 133579999999999999999999999988766777443
No 130
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=28.27 E-value=43 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCCceEEEEEc
Q 033386 63 YVVRKRIKLSAEKAIFVFVK 82 (120)
Q Consensus 63 ~~lRk~l~l~~~~slfl~Vn 82 (120)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45799999999999999997
No 131
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=28.10 E-value=84 Score=24.44 Aligned_cols=46 Identities=7% Similarity=0.092 Sum_probs=33.3
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
..-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QR-Li~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEeCCeecCCCCCHHHc
Confidence 34689999999999999999999876433 33455555556666543
No 132
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.83 E-value=1.8e+02 Score=23.94 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=48.3
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcC-------CCC-CCCchHHHHHhH
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-------TLP-PTGALMSAIYEE 98 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~-------~~p-~~~~~~~~lY~~ 98 (120)
++|.|.+... ..|.-+.-..-++..+|.+|+...+.++|+++|..--|.-+|+ .++ ..+.+|.++...
T Consensus 238 nrv~V~f~~~---~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~ 313 (530)
T 2ylm_A 238 HRVDVIFCDK---TIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQF 313 (530)
T ss_dssp HEEEEEEEET---TSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTT
T ss_pred cceEEEEeec---CCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhc
Confidence 4888877663 2333444667899999999999999999999987743433431 132 457799998854
No 133
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=27.67 E-value=38 Score=21.26 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=28.7
Q ss_pred eEEecCCCchHhHHHHHHHHhC-CC---------CCceEEEEEcCCCCCCCch
Q 033386 49 KYLVPADLSVGQFVYVVRKRIK-LS---------AEKAIFVFVKNTLPPTGAL 91 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~-l~---------~~~slfl~Vn~~~p~~~~~ 91 (120)
.+-++...|+++++..|..+.. +. ....+-++||+.....+..
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~ 82 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEE 82 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCB
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCC
Confidence 4556888999999999877631 11 1245779999876444443
No 134
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=26.17 E-value=83 Score=23.98 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred ccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 46 DKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
+.+-|.-..+++..+|...++..=.++ +.| .|++. .+-++|++ +.|..|+|+.|+.
T Consensus 52 ~~~~y~D~~di~~~efy~~~~~~~~~p-~TS--------qps~~-~~~~~f~~--~~~~Ii~i~iSs~ 107 (298)
T 3jr7_A 52 EDTQWTDDDSLKQEELLLKIAESTSCA-KTS--------CPSPE-RYMESYHC--DAERIYVVTLSAE 107 (298)
T ss_dssp TTEEEECSTTSCHHHHHHHHHHCSSCC-EEE--------CCCHH-HHHHHHCS--SCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCc-eeC--------CCCHH-HHHHHHHh--cCCeEEEEECCcc
Confidence 334555556788899988887541121 111 23332 24455553 4677999998874
No 135
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=25.91 E-value=1.4e+02 Score=19.38 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=33.7
Q ss_pred CeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCc-eEEE
Q 033386 28 DRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEK-AIFV 79 (120)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~-slfl 79 (120)
+.|.|.|...... ...-.-|+.+.||++|...|..+-+++++. .|++
T Consensus 5 ~~v~l~V~~~~~~-----~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 5 EVYDLEITTNATD-----FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp CEEEEEEEESSCC-----SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CEEEEEEEECCCC-----ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 4677877653221 123457999999999999999999998764 4444
No 136
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=25.14 E-value=91 Score=19.57 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=22.1
Q ss_pred EEEcCCC-CCCCchHHHHHhHccC-------CCCeEEEEecCcc
Q 033386 79 VFVKNTL-PPTGALMSAIYEENKD-------EDGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~~-p~~~~~~~~lY~~~kd-------~DGfLyi~Ys~~~ 114 (120)
|||.|-- -...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 4555422 2345577888887753 1388888887643
No 137
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=25.06 E-value=80 Score=20.36 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=32.0
Q ss_pred CCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCC
Q 033386 43 PDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNT 84 (120)
Q Consensus 43 p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~ 84 (120)
|...+.+..|..+.++.|+..---++.++++++- -|.-|++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 4556788999999999999999999999987653 3433443
No 138
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=24.85 E-value=57 Score=22.27 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHH
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSA 94 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 94 (120)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++
T Consensus 110 ~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~D~~tL~~ 154 (172)
T 3u30_A 110 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 154 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTSBSGG
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCceeEEEE-ECCccCCCCCcHHH
Confidence 3468899999999999999999987653333 45655556667765
No 139
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=24.62 E-value=32 Score=21.01 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=27.9
Q ss_pred eEEecCCCchHhHHHHHHHHhC------CCCC----ceEEEEEcCCCCCCCc
Q 033386 49 KYLVPADLSVGQFVYVVRKRIK------LSAE----KAIFVFVKNTLPPTGA 90 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~------l~~~----~slfl~Vn~~~p~~~~ 90 (120)
.+-+|...|+++++..|..+.. +..+ ..+-++||+.....+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 3456778899999999987652 2211 2367889987644443
No 140
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=23.80 E-value=1.2e+02 Score=19.27 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCC-CCchHHHHHhHccC--------CCCeEEEEecCc
Q 033386 76 AIFVFVKNTLPP-TGALMSAIYEENKD--------EDGFLYMTYSGE 113 (120)
Q Consensus 76 slfl~Vn~~~p~-~~~~~~~lY~~~kd--------~DGfLyi~Ys~~ 113 (120)
+-.|||.|--+. ..+.|.+|+.+|.. .-||=.|.|++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 457888886665 45599999999964 367777777665
No 141
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.45 E-value=68 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~ 38 (120)
.-|.+||+.-.+.+.+.-..++|||+--..
T Consensus 63 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 92 (307)
T 3s5o_A 63 FLTSSERLEVVSRVRQAMPKNRLLLAGSGC 92 (307)
T ss_dssp GSCHHHHHHHHHHHHHTSCTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHcCCCCcEEEecCC
Confidence 346799999999999988999999996543
No 142
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=23.21 E-value=90 Score=23.44 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=35.4
Q ss_pred cceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccCC-CCeEEEEecCc
Q 033386 47 KKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGE 113 (120)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGfLyi~Ys~~ 113 (120)
..-|.-..+++..+|...+++.=.+ |+.| .|++. .+-++|++..++ |..|+|+.|+.
T Consensus 34 ~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 34 GAIYRDWEEITPTEIFQKVREGAAF-PTTS--------QPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TEEEETTTTCCHHHHHHHHHTTCCC-CEEE--------CCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CEEEecCCCCCHHHHHHHHHhCCCC-cccC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 3445545678889998888753112 1211 34433 567788777443 77999998864
No 143
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=22.97 E-value=1.6e+02 Score=19.09 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCeeeEEEEecCCCCCCCCccceEEecC--CCchHhHHHHHHHHhCCCCC--ceEEEEEcCC-CCCCCchHHHHHhHccC
Q 033386 27 PDRIPVIVEKAEKTDVPDIDKKKYLVPA--DLSVGQFVYVVRKRIKLSAE--KAIFVFVKNT-LPPTGALMSAIYEENKD 101 (120)
Q Consensus 27 p~~ipVIvE~~~~~~~p~L~k~Kflvp~--~~tv~~~~~~lRk~l~l~~~--~slfl~Vn~~-~p~~~~~~~~lY~~~kd 101 (120)
|-.-|..|--..+++. .-...+++|+. -.|+.+|...|-++++++.+ ..||=. ++. +-+.+ + .
T Consensus 10 ~~~~pk~I~v~rNGD~-~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~-~G~~V~~l~----d----l-- 77 (108)
T 2dnf_A 10 PLQEPCTIFLIANGDL-INPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTL-EGKLVESGA----E----L-- 77 (108)
T ss_dssp CCCCCEEEEECBTTCS-SSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEET-TCCEESSTT----S----C--
T ss_pred CCCcceEEEEEeCCCC-CCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcC-CCCEeCCHH----H----h--
Confidence 4445656656666653 33457788874 45899999999999999854 444432 232 22222 1 1
Q ss_pred CCCeEEEEecCc
Q 033386 102 EDGFLYMTYSGE 113 (120)
Q Consensus 102 ~DGfLyi~Ys~~ 113 (120)
.||-.||+.+.|
T Consensus 78 ~dg~~YVa~g~E 89 (108)
T 2dnf_A 78 ENGQFYVAVGRD 89 (108)
T ss_dssp CSSCBEEEECSS
T ss_pred CCCCEEEEeCCC
Confidence 366699998754
No 144
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.93 E-value=96 Score=19.07 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=12.9
Q ss_pred chHHHHHhHccC-------CCCeEEEEecCc
Q 033386 90 ALMSAIYEENKD-------EDGFLYMTYSGE 113 (120)
Q Consensus 90 ~~~~~lY~~~kd-------~DGfLyi~Ys~~ 113 (120)
+.|.+++..|.+ .|||-+|.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 355555555532 136666666654
No 145
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=22.68 E-value=36 Score=20.26 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=23.6
Q ss_pred cCCCchHhHHHHHHHHhC-----CCCCceEEEEEcCCCCCCCc
Q 033386 53 PADLSVGQFVYVVRKRIK-----LSAEKAIFVFVKNTLPPTGA 90 (120)
Q Consensus 53 p~~~tv~~~~~~lRk~l~-----l~~~~slfl~Vn~~~p~~~~ 90 (120)
+...|+++++..|..+.. +.. ..+.+.||+.....+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~~ 64 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFDH 64 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTTC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCCC
Confidence 466799999888865421 222 3467999987543343
No 146
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.40 E-value=57 Score=24.83 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC--CCCCc--------cceEEecCC---CchHhHHHHHHHHhCCCCCce
Q 033386 10 HPLERRLAESARIREKYPDRIPVIVEKAEKTD--VPDID--------KKKYLVPAD---LSVGQFVYVVRKRIKLSAEKA 76 (120)
Q Consensus 10 ~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~--~p~L~--------k~Kflvp~~---~tv~~~~~~lRk~l~l~~~~s 76 (120)
-|.|||+.-.+...+.-..++|||+--...+. +-.+- .--.++|.- .+-.++..+.+.=..-. +-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 46799999999999888899999997543321 00000 011223322 13345555554333222 456
Q ss_pred EEEEEcC---CCCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 77 IFVFVKN---TLPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 77 lfl~Vn~---~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
++||=+- ...-..+++.+|- ++ ..+.-|.+++-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 8888541 1233345666775 23 45777777654
No 147
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=22.40 E-value=1.2e+02 Score=19.68 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=38.2
Q ss_pred ceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHH
Q 033386 48 KKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAI 95 (120)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 95 (120)
..|.|-.+..+..++...-+|.+++++.-.|||=+..+ ++++|-.+|
T Consensus 33 v~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 33 VRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 56899999999999999999999999988888755554 445556666
No 148
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=22.27 E-value=96 Score=18.57 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=23.4
Q ss_pred EEEcCCCC-CCCchHHHHHhHccC---------CCCeEEEEecCcc
Q 033386 79 VFVKNTLP-PTGALMSAIYEENKD---------EDGFLYMTYSGEN 114 (120)
Q Consensus 79 l~Vn~~~p-~~~~~~~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (120)
|||+|--+ ..++.|.+++.+|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55655322 344578888888853 2488889887654
No 149
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=22.15 E-value=1.9e+02 Score=21.52 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=39.3
Q ss_pred HhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCc--eEEEEEcCC---CCCCCchHHH
Q 033386 24 EKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEK--AIFVFVKNT---LPPTGALMSA 94 (120)
Q Consensus 24 ~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~--slfl~Vn~~---~p~~~~~~~~ 94 (120)
+..+..+.+-|.- |+=....+.|....|+.++...|.++|+|...+ +|++.-++. ...++..+.+
T Consensus 12 ~~~~~~~~~~V~l------ldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~ 81 (296)
T 3qij_A 12 ENLYFQGHCKVSL------LDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKK 81 (296)
T ss_dssp -----CCEEEEEC------TTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHH
T ss_pred CCCCceEEEEEEc------cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHH
Confidence 3344556665532 221234588999999999999999999999776 555433321 2455555554
No 150
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.92 E-value=62 Score=24.32 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC--CCCCcc--------ceEEecCCC---chHhHHHHHHHHhCCCCCc
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEKTD--VPDIDK--------KKYLVPADL---SVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~--~p~L~k--------~Kflvp~~~---tv~~~~~~lRk~l~l~~~~ 75 (120)
.-|.|||+.-.+...+.-..++|||+--...+. +-.+-+ --.++|.-. +-.++..+.+.=..- ..-
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~l 127 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INL 127 (289)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 347799999888888888889999997654321 000000 112223221 334444444322111 123
Q ss_pred eEEEEEcC---CCCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 76 AIFVFVKN---TLPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 76 slfl~Vn~---~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
.++||=+- ...-..+++.+|-+++ +.+.-|.+++-
T Consensus 128 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 128 PIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57887642 1233345788886444 45666776653
No 151
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=21.70 E-value=1.1e+02 Score=27.75 Aligned_cols=51 Identities=8% Similarity=0.202 Sum_probs=35.0
Q ss_pred eEEecCCCchHhHHHHHHHHhCCCCCc----eEEEEEcCCCC------CCCchHHHHHhHcc
Q 033386 49 KYLVPADLSVGQFVYVVRKRIKLSAEK----AIFVFVKNTLP------PTGALMSAIYEENK 100 (120)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~l~l~~~~----slfl~Vn~~~p------~~~~~~~~lY~~~k 100 (120)
+|-|+.++|+.+|+..+++++++.... .--||.. .+| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~ly~~-~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYAS-FFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTEEEEET-TCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCcEEEec-CCCchhhHHhccCCHHHHHHhhc
Confidence 567877999999999999998875321 0113322 234 35778999998753
No 152
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=21.49 E-value=1.4e+02 Score=22.95 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=37.5
Q ss_pred CccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEEcCCCCCCCchHHHHHhHccC-CCCeEEEEecCc
Q 033386 45 IDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKD-EDGFLYMTYSGE 113 (120)
Q Consensus 45 L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (120)
++..-|.-..+++..+|...+++.=.++ +. +.|++ ..+.++|++..+ -|..|+|+.|+.
T Consensus 66 ~~~~~Y~D~~di~~~efy~~m~~~~~~p-~T--------SqPs~-~~~~~~fe~l~~~~~~Ii~I~iSS~ 125 (315)
T 3fys_A 66 FREETYREEIELDWKSFYEEVKKHNELP-TT--------SQPPI-GELVALYEELGKSYDAVISIHLSSG 125 (315)
T ss_dssp CSSCEEEBTTTBCHHHHHHHHHTTTCCC-EE--------ECCCH-HHHHHHHHHHTTTCSEEEEEESCTT
T ss_pred ECCEEEECCCCCCHHHHHHHHHhCCCCc-cc--------CCCCH-HHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 3445566556889999998887531121 11 12333 467788888765 477999998864
No 153
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=21.46 E-value=64 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeeeEEEEec
Q 033386 10 HPLERRLAESARIREKYPDRIPVIVEKA 37 (120)
Q Consensus 10 ~s~e~R~~e~~~i~~kyp~~ipVIvE~~ 37 (120)
-|.+||+.-.+...+.-..++|||+--.
T Consensus 62 Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4679999999988888889999999764
No 154
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.38 E-value=65 Score=24.29 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEK 39 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~ 39 (120)
.-|.|||..-.+...+.-..++|||+--...
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 79 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGN 79 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 3577999998888888888899999876543
No 155
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=21.10 E-value=63 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEK 39 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~ 39 (120)
.-|.|||+.-.+...+.-..++|||+--...
T Consensus 65 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 95 (304)
T 3cpr_A 65 TTTAAEKLELLKAVREEVGDRAKLIAGVGTN 95 (304)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEecCCCC
Confidence 3467999998888888888999999976543
No 156
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=21.02 E-value=66 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEK 39 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~ 39 (120)
.-|.|||+.-.+...+.-..++|||+--...
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (293)
T 1f6k_A 53 MLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 83 (293)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 3477999998888888888899999976543
No 157
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.81 E-value=36 Score=20.25 Aligned_cols=39 Identities=5% Similarity=0.061 Sum_probs=26.1
Q ss_pred CCCchHhHHHHHHHHhCCCCC-ceEEEEEcCCC-CCCCchH
Q 033386 54 ADLSVGQFVYVVRKRIKLSAE-KAIFVFVKNTL-PPTGALM 92 (120)
Q Consensus 54 ~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~~~-p~~~~~~ 92 (120)
...|++++...|..+-.+..- +.+-+.||+.. +..+..+
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l 59 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPL 59 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCC
Confidence 568999999888765333211 45788999876 6555443
No 158
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.68 E-value=77 Score=19.17 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCeeeEEEEecCCCC---CCCCccceEEecCCCchHhHHHHHHHHhCCC
Q 033386 17 AESARIREKYPDRIPVIVEKAEKTD---VPDIDKKKYLVPADLSVGQFVYVVRKRIKLS 72 (120)
Q Consensus 17 ~e~~~i~~kyp~~ipVIvE~~~~~~---~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~ 72 (120)
.-...+++.+| .+|||+=...... ...++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 6787774433211 0011111 25666778888888888776543
No 159
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.30 E-value=51 Score=25.02 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC--CCCCcc--------ceEEecCCC---chHhHHHHHHHHhCCCCCc
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEKTD--VPDIDK--------KKYLVPADL---SVGQFVYVVRKRIKLSAEK 75 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~--~p~L~k--------~Kflvp~~~---tv~~~~~~lRk~l~l~~~~ 75 (120)
.-|.+||+.-.+...+.-..++|||+--...+. +-.+-+ --.++|.-. +-.++....+.=..-. .-
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~l 131 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EI 131 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CC
Confidence 346799999999888888899999996654321 000000 112232221 3344444443322111 24
Q ss_pred eEEEEEcCC---CCCCCchHHHHHhHccCCCCeEEEEecCc
Q 033386 76 AIFVFVKNT---LPPTGALMSAIYEENKDEDGFLYMTYSGE 113 (120)
Q Consensus 76 slfl~Vn~~---~p~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (120)
.++||=+-. ..-..+++.+|- + .+.+.-|.+++-
T Consensus 132 PiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 168 (300)
T 3eb2_A 132 PVVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDAST 168 (300)
T ss_dssp CEEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSS
T ss_pred CEEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCC
Confidence 588886522 222234677772 2 356777887764
No 160
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.27 E-value=68 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~ 38 (120)
.-|.|||+.-.+...+.-..++|||+--..
T Consensus 60 ~Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 60 VQSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 347799999888888888889999996554
No 161
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=20.25 E-value=1.9e+02 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033386 42 VPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV 81 (120)
Q Consensus 42 ~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 81 (120)
+|+=....+.|....|+.+++..|.++|+|...+-.=|++
T Consensus 92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 3443445688999999999999999999999766555554
No 162
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.23 E-value=70 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAE 38 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~ 38 (120)
.-|.|||+.-.+...+.-..++|||+--..
T Consensus 61 ~Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 61 ALTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 347799999888888888889999997654
No 163
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=20.10 E-value=83 Score=24.04 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCC---------CCCCc--cceEEecCCC---chHhHHHHHHHHhCCCCC
Q 033386 9 EHPLERRLAESARIREKYPDRIPVIVEKAEKTD---------VPDID--KKKYLVPADL---SVGQFVYVVRKRIKLSAE 74 (120)
Q Consensus 9 ~~s~e~R~~e~~~i~~kyp~~ipVIvE~~~~~~---------~p~L~--k~Kflvp~~~---tv~~~~~~lRk~l~l~~~ 74 (120)
.-|.+||+.-.+...+.-..++|||+--...+. +-.+. .--.++|.-. +-.++..+.+.=..- .+
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~ 134 (311)
T 3h5d_A 56 TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SD 134 (311)
T ss_dssp GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CC
Confidence 346799999999999988999999996544321 11110 1122333321 334455544432221 13
Q ss_pred ceEEEEEcC---CCCCCCchHHHHHhHccCCCCeEEEEecC
Q 033386 75 KAIFVFVKN---TLPPTGALMSAIYEENKDEDGFLYMTYSG 112 (120)
Q Consensus 75 ~slfl~Vn~---~~p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (120)
-.++||=+- ...-..+++.+|-+ + +.+.-|.+|+
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~-~---pnIvgiKdss 171 (311)
T 3h5d_A 135 LPIIIYNIPGRVVVELTPETMLRLAD-H---PNIIGVKECT 171 (311)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHHT-S---TTEEEEEECS
T ss_pred CCEEEEecccccCCCCCHHHHHHHhc-C---CCEEEEEeCC
Confidence 468888541 12223345666653 2 4577777765
Done!