BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033388
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2
          Length = 137

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 13  GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXXXXXXXXXXX-- 69
           G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD              
Sbjct: 15  GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDH 74

Query: 70  --XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct: 75  ELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 120


>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
 pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
 pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
 pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
 pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
          Length = 417

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 21  PKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKE 54
           P+ W HP      +  +  +  +D  P  GG  E
Sbjct: 325 PRLWDHPDEFRPERFAEREENLFDMIPQGGGHAE 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,267,380
Number of Sequences: 62578
Number of extensions: 100694
Number of successful extensions: 224
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)