BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033388
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2
SV=1
Length = 227
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 2 GCAGSSQSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
G +Q K G + ++K KP WK P+T+ QL RDEFWDTAP + GRKEIWDAL+
Sbjct: 14 GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73
Query: 61 AAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
AAA A D LAQAIVD A + + LT CYDE G +Y+LP Y L+ P NLI E
Sbjct: 74 AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130
>sp|Q6DG43|UBTD2_DANRE Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2
SV=1
Length = 240
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 11/121 (9%)
Query: 4 AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
+GS +DGT + +++ KP WK P+T QL RDEFWDTAP + GRKEIW
Sbjct: 12 SGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71
Query: 57 DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
DAL+AAA+A D LAQAI+D A + + LT CYDE G +Y+LP Y LS P N+I
Sbjct: 72 DALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIE 131
Query: 113 E 113
E
Sbjct: 132 E 132
>sp|Q6GL38|UBTD1_XENTR Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis
GN=ubtd1 PE=2 SV=1
Length = 240
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 19/131 (14%)
Query: 2 GCAGS-------SQSKADGTVKK-------IRKPKP-WKHPQPITKSQLMQLRDEFWDTA 46
GC G SQS+A G +K ++K +P WK P+T QL RDEFWDTA
Sbjct: 3 GCVGRPQGESQRSQSRASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTA 62
Query: 47 PHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKY 102
P + GRKEIWDAL+AAA A D LAQAIVD A + + LT CYDE G +Y+LP Y
Sbjct: 63 PAFEGRKEIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVY 122
Query: 103 VLSEPTNLIRE 113
L+ P NLI E
Sbjct: 123 CLAPPVNLIME 133
>sp|Q6PGH0|UBTD2_MOUSE Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2
SV=1
Length = 234
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 4 AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
+GS +DGT + ++K KP WK P+T QL RDEFWDTAP + GRKEIW
Sbjct: 12 SGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71
Query: 57 DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
DAL+AAA A D LAQAI+D A + + LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 72 DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131
Query: 113 E 113
E
Sbjct: 132 E 132
>sp|Q640W6|UBTD1_XENLA Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1
PE=2 SV=1
Length = 234
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 4 AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
+GS +DGT + ++K KP WK P+T QL RDEFWDTAP + GRKEIW
Sbjct: 12 SGSLNENSDGTGVALGRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71
Query: 57 DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
DAL+AAA A D LAQAI+D A + + LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 72 DALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131
Query: 113 E 113
E
Sbjct: 132 E 132
>sp|Q8WUN7|UBTD2_HUMAN Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1
SV=2
Length = 234
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 4 AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
+GS ++GT + ++K KP WK P+T QL RDEFWDTAP + GRKEIW
Sbjct: 12 SGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71
Query: 57 DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
DAL+AAA A D LAQAI+D A + + LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 72 DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131
Query: 113 E 113
E
Sbjct: 132 E 132
>sp|Q5EAE3|UBTD2_BOVIN Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2
SV=1
Length = 234
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 4 AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
+GS ++GT + ++K KP WK P+T QL RDEFWDTAP + GRKEIW
Sbjct: 12 SGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71
Query: 57 DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
DAL+AAA A D LAQAI+D A + + LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 72 DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131
Query: 113 E 113
E
Sbjct: 132 E 132
>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2
SV=1
Length = 227
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
WK P+T QL RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A +
Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95
Query: 80 IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
+ L CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
>sp|Q3ZBQ1|UBTD1_BOVIN Ubiquitin domain-containing protein 1 OS=Bos taurus GN=UBTD1 PE=2
SV=1
Length = 227
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
WK P+T QL RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A +
Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95
Query: 80 IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
+ L CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1
PE=2 SV=1
Length = 227
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
WK P+T QL RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A +
Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95
Query: 80 IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
+ L CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
>sp|Q9HAC8|UBTD1_HUMAN Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1
SV=1
Length = 227
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
WK P+T QL RDEFWDTAP + GRKEIWDAL+AAA A D LAQAI+D A +
Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95
Query: 80 IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
+ L CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129
>sp|Q9HDW4|YFW7_SCHPO Uncharacterized protein PB2B4.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAPB2B4.07 PE=1 SV=1
Length = 239
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 2 GCAGSSQSKADGTVKKIRKPKPWKHPQPI-TKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
G A + + G+ +R PK + P P+ TK ++ R+EFW+T YGG KEIWD L
Sbjct: 12 GVANNGGEQPSGS-NILRLPKLYT-PNPLLTKEEVEVRRNEFWETCWAYGGSKEIWDVLH 69
Query: 61 AAAEADLSLAQAIVDSAGVIVQSADLTI--------CYDERGAKYELPKYVLSEP 107
L + ++A + +ADLTI YD +G YE+PK V P
Sbjct: 70 KVVTL---LYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARIP 121
>sp|Q9CI70|DPO3A_LACLA DNA polymerase III subunit alpha OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=dnaE PE=3 SV=1
Length = 1060
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 4 AGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKE 54
AG S KAD + I K K S+L +LR++F D+A H G KE
Sbjct: 643 AGFSLGKADLLRRAISKKK---------GSELEKLREDFLDSASHNGHSKE 684
>sp|Q8TXA7|UPPS_METKA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=uppS PE=3 SV=1
Length = 271
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 37 QLRDEFWDTAPHYGGRKEIWDALRAAA 63
+ +D F + A YGGR+EI DA+R A
Sbjct: 159 EYKDRFLNVAVAYGGRQEIIDAVREIA 185
>sp|A7GVZ7|PROA_CAMC5 Gamma-glutamyl phosphate reductase OS=Campylobacter curvus (strain
525.92) GN=proA PE=3 SV=1
Length = 442
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIV--DSAGVIV 81
W+HP + Q+ ++R Y R + ++ AAA A L A++ SA I
Sbjct: 99 WRHPNGM---QITKIRVPLGVLGIIYESRPNV--SIDAAALA-LKSGNAVILRGSAAAIS 152
Query: 82 QSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSL 118
+ L ++E GAK+ LPK ++ + +E +G +
Sbjct: 153 SNKFLVNLFNETGAKFGLPKGAVALVESTDKEAVGEM 189
>sp|Q4P5J4|HSE1_USTMA Class E vacuolar protein-sorting machinery protein HSE1 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=HSE1 PE=3 SV=1
Length = 593
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 15 VKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA 65
V+ R P + PQ IT + Q ++ + +APH ++ +++ RA +EA
Sbjct: 491 VQGSRLPSGPQPPQQITMAHQQQPHEQQYSSAPHDDEKRRLFERARAESEA 541
>sp|A6RBC0|RTC5_AJECN Restriction of telomere capping protein 5 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=RTC5 PE=3 SV=1
Length = 682
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 29 PITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQS 83
PI K + L+ WD R++ + EAD+ +A+++ AG+I S
Sbjct: 620 PIEKRDAISLQRAQWDFEAREAERRQAINMKVGGGEADVPTGRALLEMAGIIGDS 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,703,918
Number of Sequences: 539616
Number of extensions: 1565069
Number of successful extensions: 4233
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4201
Number of HSP's gapped (non-prelim): 20
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)