Query 033388
Match_columns 120
No_of_seqs 106 out of 115
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 13:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0013 Uncharacterized conser 100.0 5.2E-40 1.1E-44 263.5 7.5 117 2-118 3-131 (231)
2 KOG0013 Uncharacterized conser 99.9 5.7E-24 1.2E-28 171.2 5.4 113 1-114 118-230 (231)
3 PF04783 DUF630: Protein of un 61.1 3.8 8.2E-05 27.4 0.7 9 1-9 1-9 (60)
4 COG3571 Predicted hydrolase of 60.2 2.8 6.1E-05 34.2 -0.1 39 77-115 139-177 (213)
5 PF04298 Zn_peptidase_2: Putat 54.4 17 0.00036 29.8 3.5 40 66-105 39-83 (222)
6 TIGR03836 termin_org_HMW1 cyta 53.5 7.7 0.00017 27.5 1.2 32 75-111 23-55 (82)
7 PF15051 FAM198: FAM198 protei 53.2 22 0.00048 30.9 4.1 37 39-82 284-323 (326)
8 PRK14839 undecaprenyl pyrophos 52.2 8.6 0.00019 31.6 1.5 18 46-63 134-151 (239)
9 cd07366 3MGA_Dioxygenase Subun 48.9 28 0.00061 29.5 4.1 51 24-78 36-86 (328)
10 PF13605 DUF4141: Domain of un 43.1 7.5 0.00016 25.7 -0.1 12 101-112 21-32 (55)
11 PF10414 CysG_dimeriser: Siroh 42.1 23 0.00051 22.3 2.1 33 37-76 25-57 (60)
12 PRK14837 undecaprenyl pyrophos 42.1 34 0.00074 28.0 3.5 19 46-64 131-149 (230)
13 cd07233 Glyoxalase_I Glyoxalas 40.9 44 0.00095 21.6 3.3 33 66-98 80-119 (121)
14 PF08004 DUF1699: Protein of u 40.4 25 0.00054 27.0 2.3 44 68-111 58-101 (131)
15 PLN03085 nucleobase:cation sym 39.8 91 0.002 25.9 5.6 50 33-84 156-205 (221)
16 PF13467 RHH_4: Ribbon-helix-h 38.4 44 0.00096 22.5 3.1 22 52-73 19-41 (67)
17 TIGR00055 uppS undecaprenyl di 38.2 47 0.001 27.0 3.7 19 46-64 124-142 (226)
18 PF06989 BAALC_N: BAALC N-term 38.2 15 0.00033 24.2 0.7 9 1-9 1-9 (53)
19 TIGR03751 conj_TIGR03751 conju 38.0 22 0.00049 26.7 1.7 39 69-107 61-102 (116)
20 PF07011 DUF1313: Protein of u 36.8 51 0.0011 23.8 3.3 23 50-76 2-24 (87)
21 cd01414 SAICAR_synt_Sc non-met 36.2 1.8E+02 0.0038 24.3 6.9 59 26-96 147-205 (279)
22 PF05424 Duffy_binding: Duffy 34.6 36 0.00077 25.8 2.4 27 34-65 117-143 (182)
23 PF03993 DUF349: Domain of Unk 34.0 54 0.0012 20.8 2.8 20 66-85 32-51 (77)
24 PF09498 DUF2388: Protein of u 34.0 27 0.00058 24.3 1.5 10 66-75 62-71 (72)
25 cd08344 MhqB_like_N N-terminal 32.2 69 0.0015 21.0 3.2 20 65-84 66-85 (112)
26 COG2738 Predicted Zn-dependent 32.1 40 0.00086 28.0 2.4 36 66-101 42-82 (226)
27 COG2445 Uncharacterized conser 29.3 96 0.0021 23.4 3.9 44 40-86 25-68 (138)
28 PRK14836 undecaprenyl pyrophos 28.7 83 0.0018 25.9 3.7 18 47-64 140-157 (253)
29 PRK14832 undecaprenyl pyrophos 28.3 80 0.0017 26.1 3.6 19 46-64 143-161 (253)
30 cd00475 CIS_IPPS Cis (Z)-Isopr 28.1 81 0.0018 25.4 3.5 18 47-64 126-143 (221)
31 PRK14827 undecaprenyl pyrophos 27.7 87 0.0019 26.6 3.8 19 46-64 192-210 (296)
32 PF01255 Prenyltransf: Putativ 27.7 40 0.00086 26.7 1.7 38 47-87 122-170 (223)
33 PRK10240 undecaprenyl pyrophos 27.4 95 0.0021 25.2 3.8 19 46-64 118-136 (229)
34 PRK14840 undecaprenyl pyrophos 26.4 93 0.002 25.7 3.7 18 47-64 148-165 (250)
35 PRK14831 undecaprenyl pyrophos 26.4 92 0.002 25.5 3.6 19 46-64 145-163 (249)
36 TIGR02448 conserverd hypotheti 25.9 64 0.0014 23.8 2.3 10 66-75 91-100 (101)
37 COG0020 UppS Undecaprenyl pyro 25.7 94 0.002 25.6 3.6 39 46-86 141-190 (245)
38 PF01126 Heme_oxygenase: Heme 25.5 1.3E+02 0.0028 22.5 4.0 28 51-78 163-193 (205)
39 PRK14838 undecaprenyl pyrophos 25.2 1.1E+02 0.0023 25.1 3.8 19 46-64 133-151 (242)
40 PF13865 FoP_duplication: C-te 24.4 1.7E+02 0.0036 19.6 4.0 17 27-43 37-53 (74)
41 PF01687 Flavokinase: Riboflav 24.4 82 0.0018 23.1 2.7 19 57-75 107-125 (125)
42 cd07242 Glo_EDI_BRP_like_6 Thi 24.3 1.2E+02 0.0026 19.9 3.3 35 65-99 80-125 (128)
43 cd07261 Glo_EDI_BRP_like_11 Th 23.9 1.2E+02 0.0027 19.5 3.3 19 66-84 72-90 (114)
44 COG1447 CelC Phosphotransferas 23.6 81 0.0018 23.2 2.5 29 51-79 19-47 (105)
45 PF14908 DUF4496: Domain of un 23.5 74 0.0016 22.9 2.3 47 54-106 3-55 (140)
46 PF01832 Glucosaminidase: Mann 23.4 1.1E+02 0.0025 21.3 3.2 23 56-78 2-29 (136)
47 PRK14834 undecaprenyl pyrophos 23.2 1.2E+02 0.0026 25.0 3.7 19 46-64 139-157 (249)
48 PLN02587 L-galactose dehydroge 22.5 36 0.00078 27.4 0.5 14 41-54 46-60 (314)
49 TIGR01293 Kv_beta voltage-depe 22.4 33 0.00071 27.7 0.3 15 41-55 44-59 (317)
50 PF06849 DUF1246: Protein of u 22.2 21 0.00045 27.1 -0.8 37 66-102 55-93 (124)
51 PF07559 FlaE: Flagellar basal 22.1 35 0.00076 23.7 0.4 18 88-105 16-33 (130)
52 PF04198 Sugar-bind: Putative 21.6 98 0.0021 24.7 2.9 22 54-75 226-255 (255)
53 cd07252 BphC1-RGP6_N_like N-te 21.5 1.4E+02 0.003 19.9 3.2 34 65-98 69-113 (120)
54 cd08351 ChaP_like ChaP, an enz 21.2 1.3E+02 0.0029 19.9 3.1 34 65-98 69-117 (123)
55 PF12645 HTH_16: Helix-turn-he 21.2 38 0.00083 22.3 0.4 41 58-98 3-43 (65)
56 PF04439 Adenyl_transf: Strept 20.9 1.5E+02 0.0032 24.5 3.8 35 50-84 234-268 (282)
57 PF11307 DUF3109: Protein of u 20.8 2.7E+02 0.0058 22.5 5.1 68 28-112 37-131 (183)
58 PRK10625 tas putative aldo-ket 20.8 39 0.00084 27.6 0.4 21 41-63 45-73 (346)
59 cd08193 HVD 5-hydroxyvalerate 20.4 71 0.0015 26.6 1.9 33 79-111 129-175 (376)
60 PRK04101 fosfomycin resistance 20.1 89 0.0019 21.6 2.1 50 65-114 74-131 (139)
No 1
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-40 Score=263.52 Aligned_cols=117 Identities=47% Similarity=0.786 Sum_probs=103.9
Q ss_pred CCCCCCCCCCC--------CCCCCccCCCCCCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHh----cHHH
Q 033388 2 GCAGSSQSKAD--------GTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSL 69 (120)
Q Consensus 2 gc~~s~~~~~~--------~~~~~lrrp~~W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~----Dl~t 69 (120)
+|.+-.++... .|++.+|-|+.|+|+.|+|++||+.+|+|||||+|+|+||+|||||||+|+-+ |.++
T Consensus 3 ~~~s~~r~a~~~~~~g~a~~~~~l~~~~~~~~~d~~lT~gqlrskRdEFWdTapAf~GrKEIWDaL~aa~ta~e~~d~e~ 82 (231)
T KOG0013|consen 3 QCLSGNRPAGVGNNGGEAPSNSPLLREPKLWTSDPPLTKGQLRSKRDEFWDTAPAFGGRKEIWDALHAAVTAAEEGDAEA 82 (231)
T ss_pred ccccCCCCccCCCccccCCCCCchhcccccccCCCCcchhhhhhhhhhhhhcccccCCcHHHHHHHHHHHHHHhcccHHH
Confidence 46555544433 34678888999999999999999999999999999999999999999998753 9999
Q ss_pred HHHHHHHcCceeecCCcceeecCCCCccccCceecccCcccccCCCCCC
Q 033388 70 AQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSL 118 (120)
Q Consensus 70 AQ~IldaAgitlp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~~~~~ 118 (120)
||+|||+|+||||+|+|+.||||+|+.|.+|.||++-|.|++.+..+++
T Consensus 83 Aqai~dgA~~tiP~g~l~ecydelg~~y~~p~ycls~p~n~~~E~~d~~ 131 (231)
T KOG0013|consen 83 AQAILDGADLTIPEGDLSECYDELGGTYYEPIYCLSRPPNAFAERKDSE 131 (231)
T ss_pred HHHHHhccccccCCcchHHHHHhhCCeEeecceeeccCchHHHhhcccc
Confidence 9999999999999999999999999999999999999999997765543
No 2
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=5.7e-24 Score=171.16 Aligned_cols=113 Identities=40% Similarity=0.585 Sum_probs=109.5
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCce
Q 033388 1 MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVI 80 (120)
Q Consensus 1 mgc~~s~~~~~~~~~~~lrrp~~W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgit 80 (120)
|||.++...+.|+.+..+.+|++|.+++++++.+|-..|++||+|.+||+|..|||.+||||.+.| ..+|.|+.+++++
T Consensus 118 s~p~n~~~E~~d~~s~ei~~ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D-~~sQrif~Sg~~l 196 (231)
T KOG0013|consen 118 SRPPNAFAERKDSESLEIPEPPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVD-PLSQRIFFSGGVL 196 (231)
T ss_pred ccCchHHHhhccccccccCCCCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccc-hhhheeeccCCce
Confidence 899999999999999999999999999999999999999999999999999999999999999889 9999999999999
Q ss_pred eecCCcceeecCCCCccccCceecccCcccccCC
Q 033388 81 VQSADLTICYDERGAKYELPKYVLSEPTNLIREG 114 (120)
Q Consensus 81 lp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~ 114 (120)
+.+-+|+.||||.|.+|.||.+|+++|.|+....
T Consensus 197 ~dkt~LeEc~iekg~rYvlqviVlq~~~Nl~~q~ 230 (231)
T KOG0013|consen 197 VDKTDLEECKIEKGQRYVLQVIVLQEPKNLSPQE 230 (231)
T ss_pred eccccceeeeecCCCEEEEEEEeccCCCCCCCCC
Confidence 9999999999999999999999999999998754
No 3
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=61.12 E-value=3.8 Score=27.42 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 033388 1 MGCAGSSQS 9 (120)
Q Consensus 1 mgc~~s~~~ 9 (120)
|||+.|+..
T Consensus 1 MGC~~SK~d 9 (60)
T PF04783_consen 1 MGCSQSKLD 9 (60)
T ss_pred CCCCccccc
Confidence 999999854
No 4
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=60.17 E-value=2.8 Score=34.16 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=34.1
Q ss_pred cCceeecCCcceeecCCCCccccCceecccCcccccCCC
Q 033388 77 AGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGL 115 (120)
Q Consensus 77 Agitlp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~~ 115 (120)
+||.+|+=-.++.-|+.|++=++-.|.+|+|+.++.-.+
T Consensus 139 ~gl~tPtli~qGtrD~fGtr~~Va~y~ls~~iev~wl~~ 177 (213)
T COG3571 139 TGLKTPTLITQGTRDEFGTRDEVAGYALSDPIEVVWLED 177 (213)
T ss_pred cCCCCCeEEeecccccccCHHHHHhhhcCCceEEEEecc
Confidence 688888876679999999999999999999999985443
No 5
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=54.38 E-value=17 Score=29.84 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHcCce-----eecCCcceeecCCCCccccCceecc
Q 033388 66 DLSLAQAIVDSAGVI-----VQSADLTICYDERGAKYELPKYVLS 105 (120)
Q Consensus 66 Dl~tAQ~IldaAgit-----lp~gdL~~~YDe~G~~Y~lP~~v~s 105 (120)
--+.|+.|||.+||. ...|.|+..||-.-+--+|-+-+.+
T Consensus 39 Gae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~vy~ 83 (222)
T PF04298_consen 39 GAEVARHILDRNGLSDVRVERVPGELTDHYDPRNKVVRLSEDVYN 83 (222)
T ss_pred HHHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCccCC
Confidence 367899999999983 3359999999988887776655544
No 6
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=53.51 E-value=7.7 Score=27.52 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=24.1
Q ss_pred HHcCceee-cCCcceeecCCCCccccCceecccCcccc
Q 033388 75 DSAGVIVQ-SADLTICYDERGAKYELPKYVLSEPTNLI 111 (120)
Q Consensus 75 daAgitlp-~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~ 111 (120)
|.+ .+|| .|++.++||..||-|- |.-+|.|=|
T Consensus 23 DGk-~tv~eDg~ikvAyDaDgNgYY----Iafn~Etgv 55 (82)
T TIGR03836 23 DGK-GTVPEDGSIKVAYDADGNGYY----IAFNPETGV 55 (82)
T ss_pred cCc-cccCCCCcEEEEEecCCCEEE----EEecCCCce
Confidence 444 4777 8999999999999984 556666543
No 7
>PF15051 FAM198: FAM198 protein
Probab=53.18 E-value=22 Score=30.92 Aligned_cols=37 Identities=27% Similarity=0.559 Sum_probs=27.1
Q ss_pred HhhhhccccCCCccHHHHHHHHHHHHhcHHHHH---HHHHHcCceee
Q 033388 39 RDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQ---AIVDSAGVIVQ 82 (120)
Q Consensus 39 R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ---~IldaAgitlp 82 (120)
=.+|||++ ||++-|...|... | .-|| .-|++.||+|-
T Consensus 284 D~~~WeSq---GG~~Gi~~li~~i-e---~R~kiLl~yi~~h~~~~~ 323 (326)
T PF15051_consen 284 DQVFWESQ---GGRQGIEKLIDVI-E---RRAKILLTYINAHGLKVL 323 (326)
T ss_pred hhhHhhhc---CchhhHHHHHHHH-H---HHHHHHHHHHHHcCCeec
Confidence 36899999 9999999888765 3 2233 34578888874
No 8
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=52.18 E-value=8.6 Score=31.64 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.1
Q ss_pred ccCCCccHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAA 63 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~ 63 (120)
++.|+||.||-+|.+..+
T Consensus 134 a~~Yggr~EI~~A~k~~~ 151 (239)
T PRK14839 134 AVDYSARDAILAAAAKAL 151 (239)
T ss_pred EecCCCHHHHHHHHHHhc
Confidence 358999999999988764
No 9
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=48.87 E-value=28 Score=29.54 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=34.4
Q ss_pred CCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcC
Q 033388 24 WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAG 78 (120)
Q Consensus 24 W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAg 78 (120)
|.-..+||..||..+|..+|+-++ -+|++..=.+.+...++.+...|.++.
T Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~i----~~e~~~~~~~~~~~a~~~~~~~i~~~~ 86 (328)
T cd07366 36 WFRGRTWTYEELVAERGDENENQI----TPEEMAARYARCQAALDRLADFIRAAR 86 (328)
T ss_pred cccCCCCCHHHHHhhccccccccc----CccccccchHHHHHHHHHHHHHHHHhC
Confidence 566789999999999999998877 344544444444444555555555543
No 10
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=43.11 E-value=7.5 Score=25.70 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=10.3
Q ss_pred ceecccCccccc
Q 033388 101 KYVLSEPTNLIR 112 (120)
Q Consensus 101 ~~v~s~P~Nl~~ 112 (120)
.||+.||.||..
T Consensus 21 QWvV~DP~NlAQ 32 (55)
T PF13605_consen 21 QWVVTDPGNLAQ 32 (55)
T ss_pred EEEEeCchHHHH
Confidence 589999999874
No 11
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=42.14 E-value=23 Score=22.29 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHH
Q 033388 37 QLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDS 76 (120)
Q Consensus 37 ~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~Ilda 76 (120)
.+|..||++-+ .|. +-+. ....+.+.|+.+|+.
T Consensus 25 ~~RR~FWe~~~--~g~--~~~~---~~~g~~~~A~~~l~~ 57 (60)
T PF10414_consen 25 AERRRFWERFF--DGP--FAEL---VLAGDEEEAEALLEQ 57 (60)
T ss_dssp HHHHHHHHHHT---HH--HHHH---HHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHH--cCH--HHHH---HHCCCHHHHHHHHHH
Confidence 46778999887 443 4333 334577777777764
No 12
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.12 E-value=34 Score=27.95 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=16.1
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.+..++
T Consensus 131 a~~Yggr~EI~~A~~~~~~ 149 (230)
T PRK14837 131 AINYGGRNEIVRAVKKFLS 149 (230)
T ss_pred EecCCCHHHHHHHHHHHHh
Confidence 3589999999999998874
No 13
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=40.92 E-value=44 Score=21.59 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHcCceeecC-------CcceeecCCCCccc
Q 033388 66 DLSLAQAIVDSAGVIVQSA-------DLTICYDERGAKYE 98 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~g-------dL~~~YDe~G~~Y~ 98 (120)
|++.+..-|.++|+++-.+ .+.-.+|-.|++.+
T Consensus 80 did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE 119 (121)
T cd07233 80 DVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIE 119 (121)
T ss_pred CHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEE
Confidence 6777778888899987643 22234555555544
No 14
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=40.38 E-value=25 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCceeecCCcceeecCCCCccccCceecccCcccc
Q 033388 68 SLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111 (120)
Q Consensus 68 ~tAQ~IldaAgitlp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~ 111 (120)
..+|..|+-.||.|-.||.-|---..-.+|.+|..|+..=..|.
T Consensus 58 ksi~mfL~mqgI~LleGDVwGHRKDinEYy~i~~~vi~~I~el~ 101 (131)
T PF08004_consen 58 KSIKMFLEMQGIELLEGDVWGHRKDINEYYEIPESVIERIKELK 101 (131)
T ss_pred HHHHHHHHhcCceeeccccccccCCCcccccCCHHHHHHHHHHH
Confidence 46789999999999999997655557778888887765433333
No 15
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=39.81 E-value=91 Score=25.86 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 033388 33 SQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSA 84 (120)
Q Consensus 33 ~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~g 84 (120)
.+|+..-.+.|-++. ..+.+.|.......++++..-...|+.-+++||.+
T Consensus 156 ~~lR~~Lr~~w~~~s--~~~~~~W~~~~~~~qe~Ir~LNkkIdkYNLIVPl~ 205 (221)
T PLN03085 156 NEWRSALKKAWANRC--EGDDSQWIEDSRLLQEQLRQINNKVFRYNLIVPFG 205 (221)
T ss_pred HHHHHHHHHHhcccC--chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 344444456698876 67888999988888889999999999999999954
No 16
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=38.39 E-value=44 Score=22.54 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHh-cHHHHHHH
Q 033388 52 RKEIWDALRAAAEA-DLSLAQAI 73 (120)
Q Consensus 52 r~EIW~aLraA~e~-Dl~tAQ~I 73 (120)
.++.|++|+..++. .+.+++-|
T Consensus 19 E~~FW~~L~eiA~~~g~s~~~li 41 (67)
T PF13467_consen 19 EPAFWDALEEIAAREGLSLNALI 41 (67)
T ss_dssp EHHHHHHHHHHHHHTT--HHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHH
Confidence 36899999998875 45555543
No 17
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=38.22 E-value=47 Score=26.97 Aligned_cols=19 Identities=53% Similarity=0.798 Sum_probs=16.1
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.|..++
T Consensus 124 a~~Yggr~EI~~A~~~~~~ 142 (226)
T TIGR00055 124 AFNYGGRNEILHAVKQIAE 142 (226)
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 3589999999999998774
No 18
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=38.19 E-value=15 Score=24.18 Aligned_cols=9 Identities=56% Similarity=1.176 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 033388 1 MGCAGSSQS 9 (120)
Q Consensus 1 mgc~~s~~~ 9 (120)
|||.||..+
T Consensus 1 mgcggsrad 9 (53)
T PF06989_consen 1 MGCGGSRAD 9 (53)
T ss_pred CCCCccccc
Confidence 999998855
No 19
>TIGR03751 conj_TIGR03751 conjugative transfer region lipoprotein, TIGR03751 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.02 E-value=22 Score=26.72 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHcCceeecCCcc-eeecC--CCCccccCceecccC
Q 033388 69 LAQAIVDSAGVIVQSADLT-ICYDE--RGAKYELPKYVLSEP 107 (120)
Q Consensus 69 tAQ~IldaAgitlp~gdL~-~~YDe--~G~~Y~lP~~v~s~P 107 (120)
+|+-=|..-==-|||.||- -+|=- .|..+.||-|.-.-|
T Consensus 61 ta~nei~~~F~RLPNPdlvMYVfPHLa~~~~~PVPGYsTvFp 102 (116)
T TIGR03751 61 TAENEIQQLFPRLPNPDLVMYVFPHLAGGDPTPVPGYSTVFP 102 (116)
T ss_pred HHHhHHHHhccCCCCCCeEEEEeeeecCCCCcccCCeeEeee
Confidence 4444444444579999996 34433 346677787764433
No 20
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=36.78 E-value=51 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=17.2
Q ss_pred CccHHHHHHHHHHHHhcHHHHHHHHHH
Q 033388 50 GGRKEIWDALRAAAEADLSLAQAIVDS 76 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~Dl~tAQ~Ilda 76 (120)
+|..++|+++..- +..+|.|||-
T Consensus 2 ~~d~~~~~tf~~s----F~qVQ~iLDq 24 (87)
T PF07011_consen 2 QGDGKVWQTFQKS----FVQVQSILDQ 24 (87)
T ss_pred CccHHHHHHHHHH----HHHHHHHHHH
Confidence 5788999998764 5667777764
No 21
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=36.19 E-value=1.8e+02 Score=24.34 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCcceeecCCCCc
Q 033388 26 HPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAK 96 (120)
Q Consensus 26 s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~gdL~~~YDe~G~~ 96 (120)
+++.++++++... + | +|-++.|+..+-.=.+.+..+...+||+|...-|--.+|+.|..
T Consensus 147 ~D~~Is~~~~~~~--------~---~-~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~~~g~i 205 (279)
T cd01414 147 HDENISFEEAVEI--------I---G-AELADELRELALALYERAAEYAAKRGLILADTKFEFGLDENGEI 205 (279)
T ss_pred CCCCCCHHHHHHh--------c---C-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeEeeEcCCCcE
Confidence 3568999999776 2 2 57789999988777888999999999999999987666776743
No 22
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=34.65 E-value=36 Score=25.81 Aligned_cols=27 Identities=33% Similarity=0.793 Sum_probs=22.2
Q ss_pred HHHHHHhhhhccccCCCccHHHHHHHHHHHHh
Q 033388 34 QLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA 65 (120)
Q Consensus 34 qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~ 65 (120)
...+.|++||+.= ++.||.|+--|+..
T Consensus 117 ~~~~~Re~WW~~n-----r~~IWkaM~C~l~~ 143 (182)
T PF05424_consen 117 NYKKLREDWWEEN-----RKHIWKAMICALTY 143 (182)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHh-----HHHhhcceecCCCC
Confidence 4667899999953 78999999988764
No 23
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=34.04 E-value=54 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHcCceeecCC
Q 033388 66 DLSLAQAIVDSAGVIVQSAD 85 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~gd 85 (120)
.++..++||+.+.=.+.+.+
T Consensus 32 n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 32 NLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 57888888888876666665
No 24
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=34.03 E-value=27 Score=24.31 Aligned_cols=10 Identities=70% Similarity=0.863 Sum_probs=9.0
Q ss_pred cHHHHHHHHH
Q 033388 66 DLSLAQAIVD 75 (120)
Q Consensus 66 Dl~tAQ~Ild 75 (120)
|+++||+||-
T Consensus 62 D~~LA~AILa 71 (72)
T PF09498_consen 62 DLQLAQAILA 71 (72)
T ss_pred HHHHHHHHHc
Confidence 9999999983
No 25
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=32.17 E-value=69 Score=21.00 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.2
Q ss_pred hcHHHHHHHHHHcCceeecC
Q 033388 65 ADLSLAQAIVDSAGVIVQSA 84 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~g 84 (120)
.|++.+..-|.++||++..+
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~ 85 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAA 85 (112)
T ss_pred hhHHHHHHHHHHcCCceecC
Confidence 47888889999999987544
No 26
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=32.07 E-value=40 Score=27.99 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHcCce-----eecCCcceeecCCCCccccCc
Q 033388 66 DLSLAQAIVDSAGVI-----VQSADLTICYDERGAKYELPK 101 (120)
Q Consensus 66 Dl~tAQ~IldaAgit-----lp~gdL~~~YDe~G~~Y~lP~ 101 (120)
--+.|+.|||..|+. ...|+|+.-||-.-.--+|-+
T Consensus 42 GaevAr~iLd~nGl~dV~Ve~v~G~LTDHYDP~~kvvrLSe 82 (226)
T COG2738 42 GAEVARMILDENGLYDVPVEEVPGTLTDHYDPRRKVVRLSE 82 (226)
T ss_pred HHHHHHHHHhhcCCccceeeeecCCcccccChhhheeeccc
Confidence 478999999999974 335999999998766655543
No 27
>COG2445 Uncharacterized conserved protein [Function unknown]
Probab=29.25 E-value=96 Score=23.38 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.2
Q ss_pred hhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCceeecCCc
Q 033388 40 DEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADL 86 (120)
Q Consensus 40 ~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~gdL 86 (120)
.|||+|-. .+--+=-+|..|+|+-+..+..+++..|+..|..+-
T Consensus 25 ~e~~~~~~---~~~av~~~lq~~ies~~Di~~~li~~~~~~~p~~y~ 68 (138)
T COG2445 25 VEFLKSKH---ERYAVERILQVAIESLIDIGNMLISKFGLRDPGTYD 68 (138)
T ss_pred HHhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 38999885 444555667778888999999999999998886543
No 28
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.67 E-value=83 Score=25.91 Aligned_cols=18 Identities=50% Similarity=0.634 Sum_probs=15.6
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 140 ~~YggR~EI~~A~k~l~~ 157 (253)
T PRK14836 140 VSYGGRWDIVTAARALAR 157 (253)
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 589999999999988874
No 29
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.34 E-value=80 Score=26.13 Aligned_cols=19 Identities=53% Similarity=0.657 Sum_probs=15.6
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
+++|+||.||=+|.+..++
T Consensus 143 a~~Yggr~EI~~A~k~~~~ 161 (253)
T PRK14832 143 AVNYGSRNEITRACRQVAE 161 (253)
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 3489999999999888764
No 30
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=28.12 E-value=81 Score=25.37 Aligned_cols=18 Identities=56% Similarity=0.831 Sum_probs=15.7
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
++|+||.||=+|.+..++
T Consensus 126 ~~Y~gr~eI~~a~~~~~~ 143 (221)
T cd00475 126 FNYGGRQEIIHAVREIAE 143 (221)
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 489999999999998875
No 31
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.75 E-value=87 Score=26.57 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=15.2
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.+..++
T Consensus 192 a~~YgGR~EI~~A~~~i~~ 210 (296)
T PRK14827 192 CVNYGGRTEITEATREIAR 210 (296)
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 3489999999888888764
No 32
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=27.75 E-value=40 Score=26.68 Aligned_cols=38 Identities=39% Similarity=0.522 Sum_probs=24.3
Q ss_pred cCCCccHHHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCcc
Q 033388 47 PHYGGRKEIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADLT 87 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e~-----------Dl~tAQ~IldaAgitlp~gdL~ 87 (120)
+.|+||.||=+|.+..++. +.++-..-|..+++ | .||-
T Consensus 122 ~~Yggr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~--P-pDLl 170 (223)
T PF01255_consen 122 INYGGRDEIVDAARKLAEEVQSGKLSPEDIDEELISSHLYTPDL--P-PDLL 170 (223)
T ss_dssp ECE-HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHTSTTTTS-----SEE
T ss_pred ecCCcHHHHHHHHHHhhhhhccCccccccCCHHHHHhhccccCC--C-CCEE
Confidence 4899999999999999862 34444444555555 6 6763
No 33
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.40 E-value=95 Score=25.22 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=16.0
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|++..++
T Consensus 118 a~~Yggr~EI~~A~~~~~~ 136 (229)
T PRK10240 118 AANYGGRWDIVQGVRQLAE 136 (229)
T ss_pred EeccCCHHHHHHHHHHHHH
Confidence 3589999999999988764
No 34
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.39 E-value=93 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.2
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
.+|+||.||=+|.+..++
T Consensus 148 ~~Yggr~EI~~A~~~~~~ 165 (250)
T PRK14840 148 INYGGKDELVRAFKKLHQ 165 (250)
T ss_pred ecCCcHHHHHHHHHHHHH
Confidence 489999999888888875
No 35
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.37 E-value=92 Score=25.55 Aligned_cols=19 Identities=53% Similarity=0.816 Sum_probs=15.9
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.+..++
T Consensus 145 a~~Yggr~EIv~A~~~l~~ 163 (249)
T PRK14831 145 CTNYGGRQEIVQAARAIAQ 163 (249)
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 3489999999998888775
No 36
>TIGR02448 conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=25.92 E-value=64 Score=23.83 Aligned_cols=10 Identities=60% Similarity=0.823 Sum_probs=9.0
Q ss_pred cHHHHHHHHH
Q 033388 66 DLSLAQAIVD 75 (120)
Q Consensus 66 Dl~tAQ~Ild 75 (120)
|+++||+||-
T Consensus 91 D~eLA~AILa 100 (101)
T TIGR02448 91 DMELAQAILA 100 (101)
T ss_pred HHHHHHHHHc
Confidence 9999999983
No 37
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=25.73 E-value=94 Score=25.56 Aligned_cols=39 Identities=44% Similarity=0.640 Sum_probs=26.6
Q ss_pred ccCCCccHHHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCc
Q 033388 46 APHYGGRKEIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADL 86 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e~-----------Dl~tAQ~IldaAgitlp~gdL 86 (120)
++.||||.||=+|.|.-++. +.++-..-|..++ +|..||
T Consensus 141 a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~~~--~pdpDL 190 (245)
T COG0020 141 AVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSG--LPDPDL 190 (245)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcccC--CCCCCE
Confidence 35899999999999998762 4555555555533 345555
No 38
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=25.46 E-value=1.3e+02 Score=22.46 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHh---cHHHHHHHHHHcC
Q 033388 51 GRKEIWDALRAAAEA---DLSLAQAIVDSAG 78 (120)
Q Consensus 51 Gr~EIW~aLraA~e~---Dl~tAQ~IldaAg 78 (120)
+..+.|...++++++ +.+.-+.||++|.
T Consensus 163 ~~~~~w~~f~~~l~~~~l~~~~~~~ii~~A~ 193 (205)
T PF01126_consen 163 DTGALWRAFRAALDAAALTEEERDEIIEEAK 193 (205)
T ss_dssp SHHHHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 789999999998875 5566778888774
No 39
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.17 E-value=1.1e+02 Score=25.14 Aligned_cols=19 Identities=42% Similarity=0.415 Sum_probs=15.8
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|++..++
T Consensus 133 a~~Yggr~EI~~A~~~~~~ 151 (242)
T PRK14838 133 ALSYSSRWEITEATRQIAT 151 (242)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 4589999999888888764
No 40
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=24.44 E-value=1.7e+02 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHhhhh
Q 033388 27 PQPITKSQLMQLRDEFW 43 (120)
Q Consensus 27 ~~~~T~~qL~~~R~EFW 43 (120)
..+.|.+||+.+=+.||
T Consensus 37 ~~~kT~EeLDaELD~Ym 53 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYM 53 (74)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 55899999999999999
No 41
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=24.41 E-value=82 Score=23.12 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q 033388 57 DALRAAAEADLSLAQAIVD 75 (120)
Q Consensus 57 ~aLraA~e~Dl~tAQ~Ild 75 (120)
++|+++++.|++.|+.++.
T Consensus 107 e~L~~qI~~D~~~a~~~lq 125 (125)
T PF01687_consen 107 EELKEQIKKDIEQARKYLQ 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999874
No 42
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.29 E-value=1.2e+02 Score=19.93 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=23.9
Q ss_pred hcHHHHHHHHHHcCceeecCCc-----------ceeecCCCCcccc
Q 033388 65 ADLSLAQAIVDSAGVIVQSADL-----------TICYDERGAKYEL 99 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~gdL-----------~~~YDe~G~~Y~l 99 (120)
+|++.+..-|.++|+.+...-- ...+|-.|+.++|
T Consensus 80 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~ 125 (128)
T cd07242 80 EAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLEL 125 (128)
T ss_pred HHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEE
Confidence 4688888888899998765321 1456777777653
No 43
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.89 E-value=1.2e+02 Score=19.51 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHcCceeecC
Q 033388 66 DLSLAQAIVDSAGVIVQSA 84 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~g 84 (120)
|+..+.+=+.++|+++..+
T Consensus 72 ~~~~~~~~~~~~g~~v~~~ 90 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQE 90 (114)
T ss_pred HHHHHHHHHHHCCCeEecC
Confidence 5666777777899887653
No 44
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=23.58 E-value=81 Score=23.24 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHhcHHHHHHHHHHcCc
Q 033388 51 GRKEIWDALRAAAEADLSLAQAIVDSAGV 79 (120)
Q Consensus 51 Gr~EIW~aLraA~e~Dl~tAQ~IldaAgi 79 (120)
.|..+-.||++|-+.+++.|+..|..|+=
T Consensus 19 ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 19 ARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47789999999998899988888877753
No 45
>PF14908 DUF4496: Domain of unknown function (DUF4496)
Probab=23.54 E-value=74 Score=22.88 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHcCceeec-CCcc--eeecCCCC---ccccCceeccc
Q 033388 54 EIWDALRAAAEADLSLAQAIVDSAGVIVQS-ADLT--ICYDERGA---KYELPKYVLSE 106 (120)
Q Consensus 54 EIW~aLraA~e~Dl~tAQ~IldaAgitlp~-gdL~--~~YDe~G~---~Y~lP~~v~s~ 106 (120)
.||+++..=++. .+...-|+.+|+ |.++ ..=+..|+ .-+-|.+++++
T Consensus 3 ~vW~a~~~~i~~------qL~~~kgV~Ip~fGtFtf~~~~~~~~~~~~~~~rPvF~l~~ 55 (140)
T PF14908_consen 3 RVWNALSEYIER------QLSLGKGVSIPGFGTFTFSRQKVDSGGNKNQIRRPVFVLSE 55 (140)
T ss_pred HHHHHHHHHHHH------HHhcCCCEEeCCCcEEEEEEEeeccCCccccccceEEEECH
Confidence 699999887654 445566999986 6665 22233332 66778888775
No 46
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=23.39 E-value=1.1e+02 Score=21.31 Aligned_cols=23 Identities=43% Similarity=0.341 Sum_probs=15.9
Q ss_pred HHHHHHHHH-----hcHHHHHHHHHHcC
Q 033388 56 WDALRAAAE-----ADLSLAQAIVDSAG 78 (120)
Q Consensus 56 W~aLraA~e-----~Dl~tAQ~IldaAg 78 (120)
.++...+++ ..+.+||+||++.-
T Consensus 2 ~~~~~~~~~~~gI~~~~~laQa~lESg~ 29 (136)
T PF01832_consen 2 AKAAIEAAKKYGIPPSLILAQAILESGW 29 (136)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcC
Confidence 344444444 37999999999864
No 47
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.24 E-value=1.2e+02 Score=24.96 Aligned_cols=19 Identities=47% Similarity=0.587 Sum_probs=16.5
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.+..++
T Consensus 139 a~~Yggr~EI~~A~k~~~~ 157 (249)
T PRK14834 139 AFNYGSRDEIARAVRRLAR 157 (249)
T ss_pred EeccCCHHHHHHHHHHHHH
Confidence 4689999999999998874
No 48
>PLN02587 L-galactose dehydrogenase
Probab=22.52 E-value=36 Score=27.36 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=10.8
Q ss_pred hhhccccCCC-ccHH
Q 033388 41 EFWDTAPHYG-GRKE 54 (120)
Q Consensus 41 EFWdTr~~y~-Gr~E 54 (120)
.||||++.|+ |..|
T Consensus 46 n~~DTA~~Yg~g~sE 60 (314)
T PLN02587 46 NFFDTSPYYGGTLSE 60 (314)
T ss_pred CEEECcCccCCCchH
Confidence 5899999997 4444
No 49
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=22.45 E-value=33 Score=27.68 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=11.8
Q ss_pred hhhccccCCC-ccHHH
Q 033388 41 EFWDTAPHYG-GRKEI 55 (120)
Q Consensus 41 EFWdTr~~y~-Gr~EI 55 (120)
-||||+..|+ |..|-
T Consensus 44 ~~~DTA~~Yg~g~sE~ 59 (317)
T TIGR01293 44 NLFDTAEVYAAGKAEV 59 (317)
T ss_pred CeEECccccCCCccHH
Confidence 4899999998 66554
No 50
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=22.16 E-value=21 Score=27.10 Aligned_cols=37 Identities=11% Similarity=0.394 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCceeecCCcc--eeecCCCCccccCce
Q 033388 66 DLSLAQAIVDSAGVIVQSADLT--ICYDERGAKYELPKY 102 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~gdL~--~~YDe~G~~Y~lP~~ 102 (120)
+....+.+++.-.|.||+|++. .-||..=+...+|.|
T Consensus 55 ~~~~q~~L~~~N~I~VPhgSfv~Y~G~d~ie~~~~vP~F 93 (124)
T PF06849_consen 55 SEEVQEKLREMNAIFVPHGSFVAYVGYDRIENEFKVPIF 93 (124)
T ss_dssp SHHHHHHHHHTTEEE--BTTHHHHH-HHHHHHT-SS-EE
T ss_pred hHHHHHHHHHCCeEEecCCCeeEeecHHHHhhcCCCCee
Confidence 3477788889999999999996 678876666777754
No 51
>PF07559 FlaE: Flagellar basal body protein FlaE; InterPro: IPR011491 This domain is found in several bacterial FlaE flagellar proteins. These proteins are part of the flagellar basal body rod complex.; GO: 0030694 bacterial-type flagellum basal body, rod; PDB: 2BGY_A 1WLG_B 2BGZ_A 3A69_A.
Probab=22.14 E-value=35 Score=23.66 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=13.0
Q ss_pred eeecCCCCccccCceecc
Q 033388 88 ICYDERGAKYELPKYVLS 105 (120)
Q Consensus 88 ~~YDe~G~~Y~lP~~v~s 105 (120)
.+||.+|+.+.|-.|...
T Consensus 16 ~vYDSlG~~h~lt~~f~k 33 (130)
T PF07559_consen 16 TVYDSLGNAHTLTVYFTK 33 (130)
T ss_dssp EEE-TT--EEEEEEEEEE
T ss_pred EEECCCCCEEEEEEEEEE
Confidence 699999999999888776
No 52
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=21.65 E-value=98 Score=24.73 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHh--------cHHHHHHHHH
Q 033388 54 EIWDALRAAAEA--------DLSLAQAIVD 75 (120)
Q Consensus 54 EIW~aLraA~e~--------Dl~tAQ~Ild 75 (120)
+==+|+++|+.. |..||+.||.
T Consensus 226 ~K~~aI~aALr~g~i~~LItDe~tA~~lL~ 255 (255)
T PF04198_consen 226 EKAEAILAALRGGYINVLITDESTARALLE 255 (255)
T ss_dssp GGHHHHHHHHHTTSTSEEEEEHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEECHHHHHHHhC
Confidence 335788888874 9999999984
No 53
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=21.54 E-value=1.4e+02 Score=19.85 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=24.9
Q ss_pred hcHHHHHHHHHHcCceeecCC-----------cceeecCCCCccc
Q 033388 65 ADLSLAQAIVDSAGVIVQSAD-----------LTICYDERGAKYE 98 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~gd-----------L~~~YDe~G~~Y~ 98 (120)
.|+.....-|.++||.+..+. ..-++|-.||..+
T Consensus 69 ~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE 113 (120)
T cd07252 69 AALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHE 113 (120)
T ss_pred HHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEE
Confidence 478888889999999875321 2367888888766
No 54
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.18 E-value=1.3e+02 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=22.9
Q ss_pred hcHHHHHHHHHHcCcee---ecCC-----------c-ceeecCCCCccc
Q 033388 65 ADLSLAQAIVDSAGVIV---QSAD-----------L-TICYDERGAKYE 98 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitl---p~gd-----------L-~~~YDe~G~~Y~ 98 (120)
+|+..+..-|.++|+.+ |... - .-++|-.||..+
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iE 117 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLE 117 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEE
Confidence 36888888888899886 2211 1 256777777766
No 55
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=21.15 E-value=38 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHHHhcHHHHHHHHHHcCceeecCCcceeecCCCCccc
Q 033388 58 ALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYE 98 (120)
Q Consensus 58 aLraA~e~Dl~tAQ~IldaAgitlp~gdL~~~YDe~G~~Y~ 98 (120)
.|.+|.++|.+.-+.||.--.=-+-.-++...||+.|+.|-
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~~yI~kls~r~~~d~~g~~~~ 43 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYEPYISKLSTRTLYDEYGNVYG 43 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCcCc
Confidence 56777777777777777655433333445567888887764
No 56
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=20.88 E-value=1.5e+02 Score=24.54 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=25.7
Q ss_pred CccHHHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 033388 50 GGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSA 84 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~g 84 (120)
..-.+||+||.++++-=.++|+.+-...|..-|..
T Consensus 234 ~~~~~iw~aL~~~~~LF~~~A~evA~~~~f~Ype~ 268 (282)
T PF04439_consen 234 SDYEDIWQALFAMCDLFRELAKEVAEKLGFEYPEE 268 (282)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHT----SH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46679999999999877788888888888877743
No 57
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=20.82 E-value=2.7e+02 Score=22.46 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCc--eeecCCc---------c--eeecCCC
Q 033388 28 QPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGV--IVQSADL---------T--ICYDERG 94 (120)
Q Consensus 28 ~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgi--tlp~gdL---------~--~~YDe~G 94 (120)
.|++.+|+....+.+ ++||.-|+.. ||+.|+..|+ +.-.|++ + .+||+.|
T Consensus 37 APl~~~E~~~le~~~----------~~v~~~L~~~-------~~~~I~~qG~~~~d~~Gd~~T~~v~g~eCvf~~~~e~G 99 (183)
T PF11307_consen 37 APLEEEEIAILEEIY----------PKVKPYLSPE-------GIAAIERQGVAYEDEDGDLVTPIVNGKECVFTCYDENG 99 (183)
T ss_pred CCCCHHHHHHHHHHh----------HHHhhhcCHH-------HHHHHHHcCceEEecCCCEEeeeEcCCeeEEEEEccCC
Confidence 488999999888765 6899888865 5667777787 4445544 2 5788888
Q ss_pred Cc--------------cccCceecccCccccc
Q 033388 95 AK--------------YELPKYVLSEPTNLIR 112 (120)
Q Consensus 95 ~~--------------Y~lP~~v~s~P~Nl~~ 112 (120)
.- +.=|..|-=-|+.+.+
T Consensus 100 ~~~CaiE~Ay~~G~~~~~KPISChLYPIRv~~ 131 (183)
T PF11307_consen 100 ICLCAIEKAYREGKIDFKKPISCHLYPIRVKK 131 (183)
T ss_pred EEEEHHHHHHHcCCCCCCCCceEeecceEEEe
Confidence 53 3567777777766554
No 58
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=20.76 E-value=39 Score=27.61 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=14.7
Q ss_pred hhhccccCCC--------ccHHHHHHHHHHH
Q 033388 41 EFWDTAPHYG--------GRKEIWDALRAAA 63 (120)
Q Consensus 41 EFWdTr~~y~--------Gr~EIW~aLraA~ 63 (120)
-||||+..|+ |+.|. .|..|+
T Consensus 45 ~~~DTA~~Yg~~~~~~~~g~sE~--~iG~aL 73 (346)
T PRK10625 45 NLIDVAEMYPVPPRPETQGLTET--YIGNWL 73 (346)
T ss_pred CEEECccccCCCcCCCCCCchHH--HHHHHH
Confidence 4799999997 77764 344444
No 59
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.37 E-value=71 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=24.0
Q ss_pred ceeecCC--------cceeecCCCCcccc------CceecccCcccc
Q 033388 79 VIVQSAD--------LTICYDERGAKYEL------PKYVLSEPTNLI 111 (120)
Q Consensus 79 itlp~gd--------L~~~YDe~G~~Y~l------P~~v~s~P~Nl~ 111 (120)
|.|||-. ++++||+.|.|+.+ |..++-||.=+.
T Consensus 129 i~IPTTagtgSe~t~~avi~~~~~~K~~~~~~~~~P~~ai~Dp~l~~ 175 (376)
T cd08193 129 ILVPTTAGTGSEVTPIAIVTTPETLKVGVVSPHLLPDLAILDPELTL 175 (376)
T ss_pred EEeCCCCcchHhhCCeEEEEcCCCceEEeeCccccCCEEEEChHHHc
Confidence 5678764 67889887877544 888888886544
No 60
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=20.14 E-value=89 Score=21.60 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=37.0
Q ss_pred hcHHHHHHHHHHcCceeecC--------CcceeecCCCCccccCceecccCcccccCC
Q 033388 65 ADLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYELPKYVLSEPTNLIREG 114 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~g--------dL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~ 114 (120)
.|++.+.+-|.++|+++-.+ .-.-+.|-.||..+|=..-++|-.|++.+.
T Consensus 74 ~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~~~~~~~~~~~~ 131 (139)
T PRK04101 74 EDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGTLQDRLNYYKEE 131 (139)
T ss_pred HHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCCHHHHHHHHhcc
Confidence 48899999999999986321 112578999999888777777777766554
Done!