Query 033388
Match_columns 120
No_of_seqs 106 out of 115
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 22:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksn_A Ubiquitin domain-contai 100.0 2E-54 6.7E-59 324.8 12.8 107 11-117 13-124 (137)
2 2lvv_A Flagellar calcium-bindi 71.8 8.3 0.00028 27.7 5.5 20 28-47 43-64 (226)
3 3cs1_A Flagellar calcium-bindi 61.4 12 0.00042 26.4 4.6 33 28-62 40-77 (219)
4 3kol_A Oxidoreductase, glyoxal 50.2 13 0.00044 23.8 2.9 34 65-98 107-147 (156)
5 1f75_A Undecaprenyl pyrophosph 47.0 7.9 0.00027 30.5 1.7 18 47-64 146-163 (249)
6 4g6x_A Glyoxalase/bleomycin re 45.2 16 0.00055 24.3 2.8 34 66-99 108-148 (155)
7 3qas_B Undecaprenyl pyrophosph 44.0 10 0.00036 30.0 2.0 18 47-64 143-160 (253)
8 3jz0_A Lincosamide nucleotidyl 43.3 16 0.00055 29.1 3.0 36 49-84 241-276 (287)
9 3sgv_B Undecaprenyl pyrophosph 40.8 13 0.00043 29.7 2.0 19 46-64 142-160 (253)
10 2pbe_A AAD6, aminoglycoside 6- 38.2 35 0.0012 26.8 4.2 50 29-83 220-269 (294)
11 1sk7_A Hypothetical protein PA 38.0 43 0.0015 24.6 4.4 30 50-79 152-184 (198)
12 3l7t_A SMU.1112C, putative unc 38.0 28 0.00097 21.2 3.0 33 66-98 91-131 (134)
13 3f6q_A Integrin-linked protein 36.6 15 0.0005 24.5 1.5 29 51-79 1-30 (179)
14 3r6a_A Uncharacterized protein 36.1 22 0.00076 23.8 2.4 34 66-99 75-115 (144)
15 3kj0_B BCL-2-like protein 11; 35.9 15 0.0005 20.5 1.1 9 50-58 3-11 (27)
16 4h8e_A Undecaprenyl pyrophosph 35.1 13 0.00043 29.8 1.1 19 46-64 149-167 (256)
17 2vg3_A Undecaprenyl pyrophosph 34.0 17 0.00059 29.3 1.8 18 47-64 181-198 (284)
18 2dmt_A Homeobox protein BARH-l 34.0 80 0.0027 19.7 4.7 27 27-55 21-47 (80)
19 3nze_A Putative transcriptiona 33.9 18 0.00062 27.8 1.8 23 56-78 236-266 (267)
20 1j77_A HEMO, heme oxygenase; p 33.6 55 0.0019 24.3 4.4 31 50-80 147-180 (209)
21 3u5c_S 40S ribosomal protein S 33.1 10 0.00034 28.1 0.2 61 50-110 23-92 (146)
22 1vdl_A Ubiquitin carboxyl-term 31.8 49 0.0017 22.5 3.5 36 50-86 35-73 (80)
23 2vg0_A Short-chain Z-isoprenyl 31.6 21 0.00071 27.6 1.8 18 47-64 127-144 (227)
24 3lvu_A ABC transporter, peripl 31.5 54 0.0019 23.6 4.0 38 64-104 98-135 (258)
25 3pvt_A Phenylacetic acid degra 29.7 34 0.0012 27.7 2.9 31 67-99 228-258 (311)
26 1nki_A Probable fosfomycin res 29.3 51 0.0017 20.9 3.2 35 65-99 72-111 (135)
27 3r4q_A Lactoylglutathione lyas 29.2 37 0.0013 22.6 2.6 35 65-99 88-129 (160)
28 2ehb_A Calcineurin B-like prot 27.9 8.3 0.00028 26.5 -0.9 59 1-61 1-67 (207)
29 3bqx_A Glyoxalase-related enzy 27.6 72 0.0025 20.7 3.8 46 65-110 81-137 (150)
30 1pq1_B BCL2-like protein 11; B 26.9 23 0.0008 20.5 1.0 7 52-58 3-9 (33)
31 3pam_A Transmembrane protein; 26.9 59 0.002 23.5 3.5 33 64-99 99-131 (259)
32 2y8d_A Erythrocyte membrane pr 26.9 21 0.00073 28.7 1.2 22 37-63 134-155 (306)
33 2wau_A VAR2CSA, erythrocyte me 26.6 22 0.00075 28.6 1.2 22 37-63 129-150 (302)
34 3kv1_A Transcriptional repress 25.3 49 0.0017 25.3 2.9 44 29-77 212-263 (267)
35 3v0s_A Perakine reductase; AKR 24.7 20 0.00068 28.0 0.6 14 41-54 49-64 (337)
36 3iz6_M 40S ribosomal protein S 24.6 10 0.00034 28.2 -1.1 61 50-110 21-90 (152)
37 2xu0_A Erythrocyte membrane pr 23.5 30 0.001 29.9 1.5 25 35-64 249-273 (487)
38 4hc5_A Glyoxalase/bleomycin re 23.3 64 0.0022 19.7 2.7 34 65-98 88-129 (133)
39 3rmu_A Methylmalonyl-COA epime 23.1 71 0.0024 19.3 2.9 18 66-83 87-104 (134)
40 2con_A RUH-035 protein, NIN on 22.2 28 0.00097 23.3 0.9 14 89-102 64-77 (79)
41 3ugs_B Undecaprenyl pyrophosph 22.0 28 0.00094 27.3 0.9 19 46-64 131-149 (225)
42 1pyf_A IOLS protein; beta-alph 22.0 24 0.00081 27.0 0.6 14 41-54 50-64 (312)
43 1wzd_A Heme oxygenase; electro 21.8 1.3E+02 0.0044 22.0 4.6 29 51-79 168-199 (215)
44 1p2x_A RNG2 protein, RAS GTPas 21.6 48 0.0016 23.9 2.1 18 66-83 138-155 (159)
45 3ouv_A Serine/threonine protei 21.4 52 0.0018 19.9 2.0 17 66-82 17-33 (71)
46 1wh5_A ZF-HD homeobox family p 21.4 1.6E+02 0.0056 18.5 4.7 17 28-44 22-38 (80)
47 3huh_A Virulence protein STM31 21.3 69 0.0023 20.6 2.7 35 65-99 95-140 (152)
48 3bqk_A Pfemp1 protein, erythro 21.0 42 0.0014 27.7 1.9 25 35-64 180-204 (360)
49 3bh7_B Protein XRP2; protein-p 21.0 20 0.0007 29.5 0.0 10 1-10 3-12 (352)
50 2d2r_A Undecaprenyl pyrophosph 20.9 44 0.0015 26.2 1.9 18 47-64 141-158 (245)
51 3ldg_A Putative uncharacterize 20.9 1.7E+02 0.0057 23.6 5.4 52 52-108 236-309 (384)
52 2p25_A Glyoxalase family prote 20.6 78 0.0027 19.0 2.7 17 66-82 83-99 (126)
53 3rhe_A NAD-dependent benzaldeh 20.5 61 0.0021 21.5 2.3 34 66-99 80-120 (148)
54 3qqz_A Putative uncharacterize 20.4 38 0.0013 25.9 1.4 18 88-111 229-246 (255)
55 3ey7_A Biphenyl-2,3-DIOL 1,2-d 20.4 57 0.002 20.0 2.1 34 66-99 83-127 (133)
56 3k0b_A Predicted N6-adenine-sp 20.4 1.8E+02 0.0062 23.3 5.5 52 52-108 243-316 (393)
57 3eau_A Voltage-gated potassium 20.4 19 0.00066 27.7 -0.3 14 41-54 48-62 (327)
58 2pjs_A AGR_C_3564P, uncharacte 20.3 70 0.0024 19.4 2.4 33 66-98 74-114 (119)
No 1
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2e-54 Score=324.76 Aligned_cols=107 Identities=53% Similarity=0.900 Sum_probs=101.7
Q ss_pred CCCCCCCccCCCC-CCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHh----cHHHHHHHHHHcCceeecCC
Q 033388 11 ADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSAD 85 (120)
Q Consensus 11 ~~~~~~~lrrp~~-W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~----Dl~tAQ~IldaAgitlp~gd 85 (120)
.++..+|||++++ |+|+.+||++||++||+|||||||||+||+|||+|||+|+++ |++|||+|||+||||||+||
T Consensus 13 ~~~~n~pl~~~~~~W~s~~~~Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~Dl~tAQ~IldaAgItvp~gd 92 (137)
T 2ksn_A 13 ALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGA 92 (137)
T ss_dssp SSCSSCCCCCCCCCSSCSSCCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCC
T ss_pred ccCCCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccCCc
Confidence 6677899999888 999999999999999999999999999999999999999963 99999999999999999999
Q ss_pred cceeecCCCCccccCceecccCcccccCCCCC
Q 033388 86 LTICYDERGAKYELPKYVLSEPTNLIREGLGS 117 (120)
Q Consensus 86 L~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~~~~ 117 (120)
|+.||||+|++|+||+||+|+|+||+++.+++
T Consensus 93 L~~cYDe~G~~Y~LP~yvls~P~Nl~~~~~~~ 124 (137)
T 2ksn_A 93 LTECYDELGNRYQLPVYCLAPPINMIEEKSDI 124 (137)
T ss_dssp SSEEEETTTEEEECCGGGTCCSTTTCCCTTTC
T ss_pred HHHHHhccCCccCCCeeEeeCCcccccccccc
Confidence 99999999999999999999999999887654
No 2
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=71.80 E-value=8.3 Score=27.66 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHhhh--hcccc
Q 033388 28 QPITKSQLMQLRDEF--WDTAP 47 (120)
Q Consensus 28 ~~~T~~qL~~~R~EF--WdTr~ 47 (120)
..+|..++.+.|.-| +|+.-
T Consensus 43 ~~ls~~~~~~l~~~F~~~D~d~ 64 (226)
T 2lvv_A 43 RDKDAESKSRRIELFKQFDTNG 64 (226)
T ss_dssp SSCCHHHHHHHHHHHHHHGGGS
T ss_pred hhCCHHHHHHHHHHHHHHCCCC
Confidence 357778887777766 56543
No 3
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=61.37 E-value=12 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHhhh--hccccCCCc---cHHHHHHHHHH
Q 033388 28 QPITKSQLMQLRDEF--WDTAPHYGG---RKEIWDALRAA 62 (120)
Q Consensus 28 ~~~T~~qL~~~R~EF--WdTr~~y~G---r~EIW~aLraA 62 (120)
..+|..++++.|.-| +|+.- .| ..|+-.+|+.+
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d~--dG~I~~~El~~~l~~~ 77 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKNE--TGKLCYDEVYSGCLEV 77 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTTC--SSCBCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHH
Confidence 368999999999998 77764 55 35666666653
No 4
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=50.24 E-value=13 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=25.4
Q ss_pred hcHHHHHHHHHHcCceee-------cCCcceeecCCCCccc
Q 033388 65 ADLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYE 98 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp-------~gdL~~~YDe~G~~Y~ 98 (120)
.|++.+..-|.++|+.+- .|...-+.|-.||..+
T Consensus 107 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdG~~ie 147 (156)
T 3kol_A 107 QLFDRAVTVIGENKIAIAHGPVTRPTGRGVYFYDPDGFMIE 147 (156)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEC-CCEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHCCCccccCceecCCccEEEEECCCCCEEE
Confidence 389999999999999873 3443467777787776
No 5
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=46.97 E-value=7.9 Score=30.52 Aligned_cols=18 Identities=56% Similarity=0.811 Sum_probs=15.7
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 146 ~~YggR~eIv~A~r~l~~ 163 (249)
T 1f75_A 146 LNYGGRKEIISAVQLIAE 163 (249)
T ss_dssp CSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 489999999999998775
No 6
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=45.23 E-value=16 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHcCceee-------cCCcceeecCCCCcccc
Q 033388 66 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 99 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp-------~gdL~~~YDe~G~~Y~l 99 (120)
|++.+.+-|.++|+++. .|....+.|-.||..+|
T Consensus 108 Dvda~~~~l~~~Gv~~~~~p~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 108 DIAAEYERLSALGVRFTQEPTDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECSSCEEEEEECSSSCEEEE
T ss_pred hhhhhhhHHhcCCcEEeeCCEEcCCeEEEEEECCCCCEEEE
Confidence 88888899999999873 24344566777776554
No 7
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=43.99 E-value=10 Score=29.98 Aligned_cols=18 Identities=44% Similarity=0.747 Sum_probs=16.0
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 143 ~~YgGR~EIv~A~r~l~~ 160 (253)
T 3qas_B 143 ANYGGRWDIVQGVRQLAE 160 (253)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 589999999999998775
No 8
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=43.27 E-value=16 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCccHHHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 033388 49 YGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSA 84 (120)
Q Consensus 49 y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~g 84 (120)
.....+||+||.++++-=.++|+.+-+..|.+.|..
T Consensus 241 ~~~~~~iw~Al~~~~~LF~~la~~va~~~g~~yp~~ 276 (287)
T 3jz0_A 241 RLDKVELFEAYKNSLLLVMDLQSHLIEQYNLKVTHD 276 (287)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 456789999999999988899999988888887754
No 9
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=40.76 E-value=13 Score=29.73 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=16.3
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.|..++
T Consensus 142 a~~YggR~EI~~Avr~ia~ 160 (253)
T 3sgv_B 142 AANYGGRWDIVQGVRQLAE 160 (253)
T ss_dssp ESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 4589999999999998765
No 10
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=38.24 E-value=35 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCceeec
Q 033388 29 PITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQS 83 (120)
Q Consensus 29 ~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgitlp~ 83 (120)
-++...+++.-.-| +.....+||+||.++++-=..+|+.+-...|+..|.
T Consensus 220 ~L~~e~~~~l~~t~-----~~~~~~~i~~al~~~~~LF~~~a~~va~~~~~~y~~ 269 (294)
T 2pbe_A 220 YLSNKEWEELMSTY-----SVNGYQEMWKSLFTCYALFRKYSKAVSEGLAYKYPD 269 (294)
T ss_dssp TSCHHHHHHHHTTC-----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HCCHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 45666666555554 346778999999999998888899888888887774
No 11
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=38.03 E-value=43 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=25.8
Q ss_pred CccHHHHHHHHHHHHh---cHHHHHHHHHHcCc
Q 033388 50 GGRKEIWDALRAAAEA---DLSLAQAIVDSAGV 79 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~---Dl~tAQ~IldaAgi 79 (120)
.|+++-|...++++++ |-+..+.||++|..
T Consensus 152 ~~~~~~wk~f~~~Ld~l~~d~~~~~~ii~~A~~ 184 (198)
T 1sk7_A 152 GGRAQGWKSFVAILDGIELNEEEERLAAKGASD 184 (198)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4678999999999986 78889999999864
No 12
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}
Probab=37.95 E-value=28 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHcCceeec-------CCc-ceeecCCCCccc
Q 033388 66 DLSLAQAIVDSAGVIVQS-------ADL-TICYDERGAKYE 98 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~-------gdL-~~~YDe~G~~Y~ 98 (120)
|++.+..-|.++|+++-. |.- ..+.|-.|+..+
T Consensus 91 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 131 (134)
T 3l7t_A 91 DVEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLE 131 (134)
T ss_dssp CHHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEE
Confidence 788888888889988732 211 245566666554
No 13
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=36.56 E-value=15 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHHH-hcHHHHHHHHHHcCc
Q 033388 51 GRKEIWDALRAAAE-ADLSLAQAIVDSAGV 79 (120)
Q Consensus 51 Gr~EIW~aLraA~e-~Dl~tAQ~IldaAgi 79 (120)
|.++.+.+|..|+. .+++..+.+|+..+.
T Consensus 1 G~~~~~~~l~~A~~~g~~~~v~~ll~~~~~ 30 (179)
T 3f6q_A 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTEN 30 (179)
T ss_dssp ------CCHHHHHHHTCHHHHHHHHHCTTS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHhcCcc
Confidence 67788888888876 488888888886554
No 14
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=36.10 E-value=22 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCceeec-------CCcceeecCCCCcccc
Q 033388 66 DLSLAQAIVDSAGVIVQS-------ADLTICYDERGAKYEL 99 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~-------gdL~~~YDe~G~~Y~l 99 (120)
|++.+.+-|.++|+++-. |....+.|-.||..+|
T Consensus 75 d~d~~~~~l~~~G~~v~~~p~~~~~G~~~~~~DPdG~~iel 115 (144)
T 3r6a_A 75 SLDKFKTFLEENGAEIIRGPSKVPTGRNMTVRHSDGSVIEY 115 (144)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHcCCEEecCCccCCCceEEEEECCCCCEEEE
Confidence 888899999999998732 3223677888887774
No 15
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=35.86 E-value=15 Score=20.50 Aligned_cols=9 Identities=78% Similarity=1.431 Sum_probs=7.0
Q ss_pred CccHHHHHH
Q 033388 50 GGRKEIWDA 58 (120)
Q Consensus 50 ~Gr~EIW~a 58 (120)
++++|||-|
T Consensus 3 ~~~PE~wiA 11 (27)
T 3kj0_B 3 GGRPEIWYA 11 (27)
T ss_dssp -CCHHHHHH
T ss_pred CCCchhHHH
Confidence 689999976
No 16
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=35.06 E-value=13 Score=29.77 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.0
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.|..++
T Consensus 149 a~~YggR~EI~~Avr~i~~ 167 (256)
T 4h8e_A 149 AINYGGRAELVHSIKNMFD 167 (256)
T ss_dssp EEEECHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 3479999999999998765
No 17
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=33.98 E-value=17 Score=29.33 Aligned_cols=18 Identities=50% Similarity=0.737 Sum_probs=15.8
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 181 ~~YgGR~EIv~A~r~la~ 198 (284)
T 2vg3_A 181 VNYGGRTEITEATREIAR 198 (284)
T ss_dssp EEECHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 479999999999998775
No 18
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.95 E-value=80 Score=19.67 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHhhhhccccCCCccHHH
Q 033388 27 PQPITKSQLMQLRDEFWDTAPHYGGRKEI 55 (120)
Q Consensus 27 ~~~~T~~qL~~~R~EFWdTr~~y~Gr~EI 55 (120)
...+|..||...-..|-.+. |-...++
T Consensus 21 Rt~ft~~Q~~~Le~~F~~~~--yp~~~~r 47 (80)
T 2dmt_A 21 RTVFTELQLMGLEKRFEKQK--YLSTPDR 47 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHCS--SCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 34799999999999997665 4555443
No 19
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=33.89 E-value=18 Score=27.79 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.0
Q ss_pred HHHHHHHHHh--------cHHHHHHHHHHcC
Q 033388 56 WDALRAAAEA--------DLSLAQAIVDSAG 78 (120)
Q Consensus 56 W~aLraA~e~--------Dl~tAQ~IldaAg 78 (120)
=+||++|++. |..||+.||+..|
T Consensus 236 a~Ai~aal~g~~~~~LITDe~tA~~lL~~~~ 266 (267)
T 3nze_A 236 INGLQGALAAGLATDLILDEASARRLVSFNG 266 (267)
T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHHHHTC---
T ss_pred HHHHHHHHhcCCCCEEEeCHHHHHHHHhhcC
Confidence 3688888884 9999999997654
No 20
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=33.55 E-value=55 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.1
Q ss_pred CccHHHHHHHHHHHHh---cHHHHHHHHHHcCce
Q 033388 50 GGRKEIWDALRAAAEA---DLSLAQAIVDSAGVI 80 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~---Dl~tAQ~IldaAgit 80 (120)
.++++-|...+++++. |-+..+.||++|..+
T Consensus 147 ~~~~~~w~~fr~~Ld~l~~d~~~~~~ii~~A~~a 180 (209)
T 1j77_A 147 DGRGKHWRAFVEHLNALNLTPEAEAEAIQGAREA 180 (209)
T ss_dssp TCHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678889999999986 788899999998654
No 21
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=33.08 E-value=10 Score=28.07 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=40.6
Q ss_pred CccHHHHHHHHHHHHhcHHHHHHHHHHcCc--eeecCCcc-----eeecCCCC--ccccCceecccCccc
Q 033388 50 GGRKEIWDALRAAAEADLSLAQAIVDSAGV--IVQSADLT-----ICYDERGA--KYELPKYVLSEPTNL 110 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgi--tlp~gdL~-----~~YDe~G~--~Y~lP~~v~s~P~Nl 110 (120)
-|.+.|--||...----..+|+.|+..||| ..--|+|+ -.-+...+ .|.||.|.++-.-.+
T Consensus 23 ~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD~ 92 (146)
T 3u5c_S 23 DGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDI 92 (146)
T ss_dssp CSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSCS
T ss_pred CCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHHhhhhhcc
Confidence 555555555533222268899999999999 46778886 23344444 699999998765443
No 22
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.82 E-value=49 Score=22.53 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.1
Q ss_pred CccHHHHHHHHHHHHh---cHHHHHHHHHHcCceeecCCc
Q 033388 50 GGRKEIWDALRAAAEA---DLSLAQAIVDSAGVIVQSADL 86 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~---Dl~tAQ~IldaAgitlp~gdL 86 (120)
+|-..+ +.|+.|+++ ||..|-++|-.-++..|.-+=
T Consensus 35 TGiqD~-~~L~~ALkas~Gdl~~AV~~LT~~~~~~P~q~~ 73 (80)
T 1vdl_A 35 TGINDA-QILQQALKDSNGNLELAVAFLTAKNAKTPPQEE 73 (80)
T ss_dssp SCCCCH-HHHHHHHHHHTSCHHHHHHHHHTTSCCCCSCSS
T ss_pred hCCCcH-HHHHHHHHhccCCHHHHHHHHhcccccCCCCcc
Confidence 554443 566777664 999999999999999987653
No 23
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=31.62 E-value=21 Score=27.57 Aligned_cols=18 Identities=56% Similarity=0.815 Sum_probs=16.0
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 127 ~~YggR~eI~~A~r~l~~ 144 (227)
T 2vg0_A 127 VGYGGRREIVDAVRALLS 144 (227)
T ss_dssp EEECHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 479999999999998775
No 24
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=31.49 E-value=54 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=27.3
Q ss_pred HhcHHHHHHHHHHcCceeecCCcceeecCCCCccccCceec
Q 033388 64 EADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVL 104 (120)
Q Consensus 64 e~Dl~tAQ~IldaAgitlp~gdL~~~YDe~G~~Y~lP~~v~ 104 (120)
+-|++.|+.+|+.||.+.- ++ +.++..|....|-..+-
T Consensus 98 ~~d~~kAk~LL~eaG~~~~-~~--g~~~~~G~~l~l~l~~~ 135 (258)
T 3lvu_A 98 RTNLRRAAQFLEQAGFRIE-QG--QLLGPDGAPLALRFLLR 135 (258)
T ss_dssp HHHHHHHHHHHHHTTCEEE-TT--EEECTTSSBCCCEEEEE
T ss_pred cCCHHHHHHHHHHcCCEeC-CC--cEECCCCcEEEEEEEec
Confidence 4599999999999999863 22 56677776666554443
No 25
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=29.66 E-value=34 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCceeecCCcceeecCCCCcccc
Q 033388 67 LSLAQAIVDSAGVIVQSADLTICYDERGAKYEL 99 (120)
Q Consensus 67 l~tAQ~IldaAgitlp~gdL~~~YDe~G~~Y~l 99 (120)
++....+|..+|+++|..+|. ||+-..+|+.
T Consensus 228 ~~~v~~~l~~~gL~~P~~~~~--~~~~~g~~~~ 258 (311)
T 3pvt_A 228 VDNTVPQVEMLGMTVPDPDLH--FDTESGHYRF 258 (311)
T ss_dssp HHHHHHHHHHTTCCCSCTTCE--EETTTTEEEC
T ss_pred HHHHHHHHHHcCCCCCCCCcC--ccCCCCceee
Confidence 566778899999999977664 8887666754
No 26
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=29.26 E-value=51 Score=20.91 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=24.9
Q ss_pred hcHHHHHHHHHHcCceeec-----CCcceeecCCCCcccc
Q 033388 65 ADLSLAQAIVDSAGVIVQS-----ADLTICYDERGAKYEL 99 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~-----gdL~~~YDe~G~~Y~l 99 (120)
.|++.+..-|.++|+++-. +....+.|-.||..+|
T Consensus 72 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~DPdG~~iel 111 (135)
T 1nki_A 72 ADFARFAAQLRAHGVREWKQNRSEGDSFYFLDPDGHRLEA 111 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCSSSCEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCceecCCCCCeEEEEEECCCCCEEEE
Confidence 4788888888899998754 2333567878877764
No 27
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=29.18 E-value=37 Score=22.64 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.9
Q ss_pred hcHHHHHHHHHHcCceee------cCCc-ceeecCCCCcccc
Q 033388 65 ADLSLAQAIVDSAGVIVQ------SADL-TICYDERGAKYEL 99 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp------~gdL-~~~YDe~G~~Y~l 99 (120)
.|++.+.+-|.++|+++- .|.- .-+.|-.||..+|
T Consensus 88 ~dld~~~~~l~~~G~~~~~~~~~~~g~~~~~~~DPdG~~iel 129 (160)
T 3r4q_A 88 AEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDPAGNSVEV 129 (160)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEECTTSCEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEeccccccCCcEEEEEECCCCCEEEE
Confidence 478888888999999872 2332 3688999987764
No 28
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=27.91 E-value=8.3 Score=26.50 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCCCCCccCC-CCCCCCCCCCHHHHHHHHhhhh--ccc--cCCCc---cHHHHHHHHH
Q 033388 1 MGCAGSSQSKADGTVKKIRKP-KPWKHPQPITKSQLMQLRDEFW--DTA--PHYGG---RKEIWDALRA 61 (120)
Q Consensus 1 mgc~~s~~~~~~~~~~~lrrp-~~W~s~~~~T~~qL~~~R~EFW--dTr--~~y~G---r~EIW~aLra 61 (120)
|||..|+.++.++.++.-... ..-.....+|..++.+.+.-|= |+. - .| ..|+-.+|+.
T Consensus 1 MG~~~s~~~~~~~~g~l~~~el~~l~~~~~~s~~~~~~l~~~F~~~D~d~~~--~G~i~~~e~~~~l~~ 67 (207)
T 2ehb_A 1 MGCSVSKKKKKNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIID--DGLIHKEEFQLALFR 67 (207)
T ss_dssp --------------------CHHHHHHHSSCCHHHHHHHHHHHHHHTTSSSC--SSCEEHHHHHHHHHS
T ss_pred CCcchhhHHhhccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccCC--CCccCHHHHHHHHhc
Confidence 999988854322221111000 0011123689999999998884 543 2 44 4576666653
No 29
>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}
Probab=27.57 E-value=72 Score=20.70 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=30.0
Q ss_pred hcHHHHHHHHHHcCceeec-------CCc-ceeecCCCCcccc---CceecccCccc
Q 033388 65 ADLSLAQAIVDSAGVIVQS-------ADL-TICYDERGAKYEL---PKYVLSEPTNL 110 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~-------gdL-~~~YDe~G~~Y~l---P~~v~s~P~Nl 110 (120)
.|++.+.+-|.++|+++-. |.. .-+.|-.||..+| |.+-+.++-++
T Consensus 81 ~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~~~~~~~~g~~ 137 (150)
T 3bqx_A 81 TEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSV 137 (150)
T ss_dssp GGHHHHHHHHHHTTCEEEEEEECCTTSSEEEEEECTTCCEEEEEECTTSCEETTEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCcccCCCCEEEEEECCCCCEEEEEeCCCceECCCCcE
Confidence 4888888888999987632 222 2577999998875 33434444343
No 30
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=26.92 E-value=23 Score=20.50 Aligned_cols=7 Identities=57% Similarity=0.416 Sum_probs=5.6
Q ss_pred cHHHHHH
Q 033388 52 RKEIWDA 58 (120)
Q Consensus 52 r~EIW~a 58 (120)
|+|||-|
T Consensus 3 rPEiwIA 9 (33)
T 1pq1_B 3 RPEIRIA 9 (33)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 6799976
No 31
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=26.89 E-value=59 Score=23.45 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=24.0
Q ss_pred HhcHHHHHHHHHHcCceeecCCcceeecCCCCcccc
Q 033388 64 EADLSLAQAIVDSAGVIVQSADLTICYDERGAKYEL 99 (120)
Q Consensus 64 e~Dl~tAQ~IldaAgitlp~gdL~~~YDe~G~~Y~l 99 (120)
+-|++.|+.+|+.||.+.-.+ +.++..|....|
T Consensus 99 ~~d~~kAk~LL~eaG~~~~~~---g~~~~~G~~l~l 131 (259)
T 3pam_A 99 RLNAQKAWKLLQEAGFTKKNN---RLIAPNGLPFQF 131 (259)
T ss_dssp HHHHHHHHHHHHHTTCEEETT---EEECTTSCBCEE
T ss_pred ccCHHHHHHHHHHcCCccCCC---cEECCCCcEEEE
Confidence 359999999999999987322 556666765444
No 32
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A {Plasmodium falciparum}
Probab=26.85 E-value=21 Score=28.70 Aligned_cols=22 Identities=23% Similarity=0.758 Sum_probs=18.6
Q ss_pred HHHhhhhccccCCCccHHHHHHHHHHH
Q 033388 37 QLRDEFWDTAPHYGGRKEIWDALRAAA 63 (120)
Q Consensus 37 ~~R~EFWdTr~~y~Gr~EIW~aLraA~ 63 (120)
+.|+++|+.- |++||.|+-=+.
T Consensus 134 ~~Re~WW~~N-----r~~VWkam~C~~ 155 (306)
T 2y8d_A 134 EKRKKWWDMN-----KYHIWESMLCGY 155 (306)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ccHHHHHHHh-----HHHHHHHhhhcc
Confidence 5799999854 799999998874
No 33
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin sulphate A, membrane protein DBL, malaria; 3.00A {Plasmodium falciparum}
Probab=26.64 E-value=22 Score=28.56 Aligned_cols=22 Identities=23% Similarity=0.767 Sum_probs=18.6
Q ss_pred HHHhhhhccccCCCccHHHHHHHHHHH
Q 033388 37 QLRDEFWDTAPHYGGRKEIWDALRAAA 63 (120)
Q Consensus 37 ~~R~EFWdTr~~y~Gr~EIW~aLraA~ 63 (120)
+.|+++|+.- |++||.|+-=++
T Consensus 129 ~~Re~WW~~n-----r~~IWkam~C~~ 150 (302)
T 2wau_A 129 EKRKKWWDMN-----KYHIWESMLSGY 150 (302)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ccHHHHHHHh-----hHhhhhhhcccc
Confidence 5799999854 799999998875
No 34
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=25.32 E-value=49 Score=25.33 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHh--------cHHHHHHHHHHc
Q 033388 29 PITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA--------DLSLAQAIVDSA 77 (120)
Q Consensus 29 ~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~--------Dl~tAQ~IldaA 77 (120)
.++-++|.+.+.-. .++ +|. +==+||++|++. |..||+.||+..
T Consensus 212 ~~~l~~l~~~~~~i---~va-~G~-~K~~ai~~al~~~~~~~LITDe~tA~~lL~~~ 263 (267)
T 3kv1_A 212 GLEMEDLRQIPNVV---AMA-SES-RKALSIMGALRTGVIDVLATSVSCAMALLNLA 263 (267)
T ss_dssp BCCHHHHHTSSEEE---EEC-CCG-GGHHHHHHHHHTSCCSEEEEEHHHHHHHHHHH
T ss_pred ecCHHHHcCCCcEE---EEe-cCh-HHHHHHHHHHhcCCCCEEEeCHHHHHHHHhcc
Confidence 45666666554222 222 333 334789999984 999999999864
No 35
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=24.70 E-value=20 Score=27.99 Aligned_cols=14 Identities=50% Similarity=0.978 Sum_probs=11.5
Q ss_pred hhhccccCCC--ccHH
Q 033388 41 EFWDTAPHYG--GRKE 54 (120)
Q Consensus 41 EFWdTr~~y~--Gr~E 54 (120)
-||||+..|+ |+.|
T Consensus 49 ~~~DTA~~Yg~~G~sE 64 (337)
T 3v0s_A 49 TFFDTSDIYGENGSNE 64 (337)
T ss_dssp CEEECCTTSSSTTHHH
T ss_pred CEEEChhhhCCCCcHH
Confidence 4999999999 5555
No 36
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.63 E-value=10 Score=28.25 Aligned_cols=61 Identities=13% Similarity=0.291 Sum_probs=42.2
Q ss_pred CccHHHHHHHHHHHHhcHHHHHHHHHHcCc--eeecCCcce-----eecCCC--CccccCceecccCccc
Q 033388 50 GGRKEIWDALRAAAEADLSLAQAIVDSAGV--IVQSADLTI-----CYDERG--AKYELPKYVLSEPTNL 110 (120)
Q Consensus 50 ~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgi--tlp~gdL~~-----~YDe~G--~~Y~lP~~v~s~P~Nl 110 (120)
-|.+.|.-||...----..+|+.|+..||| ..--|+|+. .=+... ..|.||.|.++-.-.+
T Consensus 21 ~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~ 90 (152)
T 3iz6_M 21 DGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDY 90 (152)
T ss_dssp CCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSC
T ss_pred CCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhccc
Confidence 677788777744322378999999999999 467788861 112222 4689999988765433
No 37
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence, duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo alto}
Probab=23.47 E-value=30 Score=29.91 Aligned_cols=25 Identities=36% Similarity=0.904 Sum_probs=19.4
Q ss_pred HHHHHhhhhccccCCCccHHHHHHHHHHHH
Q 033388 35 LMQLRDEFWDTAPHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 35 L~~~R~EFWdTr~~y~Gr~EIW~aLraA~e 64 (120)
..+.|+++|+.= |++||.|+-=++.
T Consensus 249 ~~~lREdWW~~N-----r~~VWkAMtC~~~ 273 (487)
T 2xu0_A 249 YAKLREDWWTIN-----REQIWKALTCSAP 273 (487)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHTTTCC
T ss_pred ccccHHHHHHHh-----HHHHHHHHhccCc
Confidence 457899999854 7899999876543
No 38
>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}
Probab=23.28 E-value=64 Score=19.74 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=22.5
Q ss_pred hcHHHHHHHHHHcCceeec-------C-CcceeecCCCCccc
Q 033388 65 ADLSLAQAIVDSAGVIVQS-------A-DLTICYDERGAKYE 98 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~-------g-dL~~~YDe~G~~Y~ 98 (120)
.|++.+..-|.++|+++-. | ....+.|-.|+...
T Consensus 88 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~e 129 (133)
T 4hc5_A 88 RDIDEAYKTLTERGVTFTKPPEMMPWGQRATWFSDPDGNQFF 129 (133)
T ss_dssp SCHHHHHHHHHHTTCEESSSCEECTTSCEEEEEECTTCEEEE
T ss_pred CCHHHHHHHHHHCCCEeecCCCcCCCCCEEEEEECCCCCEEE
Confidence 3888888889999998753 2 11245566666544
No 39
>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0
Probab=23.13 E-value=71 Score=19.31 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHcCceeec
Q 033388 66 DLSLAQAIVDSAGVIVQS 83 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~ 83 (120)
|++.+..-|.++|+.+..
T Consensus 87 d~~~~~~~l~~~G~~~~~ 104 (134)
T 3rmu_A 87 NINAAVMDLKKKKIRSLS 104 (134)
T ss_dssp CHHHHHHHHHHTTCTTBC
T ss_pred CHHHHHHHHHHcCCcccC
Confidence 788899999999998743
No 40
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.24 E-value=28 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.7
Q ss_pred eecCCCCccccCce
Q 033388 89 CYDERGAKYELPKY 102 (120)
Q Consensus 89 ~YDe~G~~Y~lP~~ 102 (120)
|+..+|++|.||+-
T Consensus 64 ~~n~RG~~ySlPkp 77 (79)
T 2con_A 64 VLNPRGLRYSSGPS 77 (79)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred ccccCCCCccCCCC
Confidence 47889999999974
No 41
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=21.99 E-value=28 Score=27.30 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=15.1
Q ss_pred ccCCCccHHHHHHHHHHHH
Q 033388 46 APHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 46 r~~y~Gr~EIW~aLraA~e 64 (120)
++.|+||.||=+|.|..++
T Consensus 131 a~~YggR~EI~~A~~~iv~ 149 (225)
T 3ugs_B 131 AISYGARDEIIRAAKRVIE 149 (225)
T ss_dssp EEEECHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 3579999999998888743
No 42
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=21.99 E-value=24 Score=27.02 Aligned_cols=14 Identities=57% Similarity=0.821 Sum_probs=10.9
Q ss_pred hhhccccCCC-ccHH
Q 033388 41 EFWDTAPHYG-GRKE 54 (120)
Q Consensus 41 EFWdTr~~y~-Gr~E 54 (120)
-||||+..|+ |+.|
T Consensus 50 ~~~DTA~~Yg~G~sE 64 (312)
T 1pyf_A 50 TMLDTAYIYGIGRSE 64 (312)
T ss_dssp CEEECCTTTTTTHHH
T ss_pred CEEECccccCCCchH
Confidence 5899999998 4444
No 43
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=21.83 E-value=1.3e+02 Score=22.05 Aligned_cols=29 Identities=14% Similarity=0.018 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHHHh---cHHHHHHHHHHcCc
Q 033388 51 GRKEIWDALRAAAEA---DLSLAQAIVDSAGV 79 (120)
Q Consensus 51 Gr~EIW~aLraA~e~---Dl~tAQ~IldaAgi 79 (120)
+.++.|+..|++++. |-+..+.||++|..
T Consensus 168 ~~~~~~~~fr~~Ld~~~~~~~~~~~ii~eA~~ 199 (215)
T 1wzd_A 168 KLKVYKDEYREKLNNLELSDEQREHLLKEATD 199 (215)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 458999999999985 78888999998854
No 44
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=21.57 E-value=48 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHcCceeec
Q 033388 66 DLSLAQAIVDSAGVIVQS 83 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~ 83 (120)
+|..++..|+.+|+.+|+
T Consensus 138 ql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 138 DVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp HHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 588999999999999886
No 45
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=21.39 E-value=52 Score=19.87 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHcCceee
Q 033388 66 DLSLAQAIVDSAGVIVQ 82 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp 82 (120)
.++.|+.+|.++|+.+-
T Consensus 17 ~~~~A~~~L~~~Gl~~~ 33 (71)
T 3ouv_A 17 TVDVAQKNMNVYGFTKF 33 (71)
T ss_dssp BHHHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHHHCCCeEE
Confidence 57889999999999763
No 46
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.37 E-value=1.6e+02 Score=18.55 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHhhhhc
Q 033388 28 QPITKSQLMQLRDEFWD 44 (120)
Q Consensus 28 ~~~T~~qL~~~R~EFWd 44 (120)
..+|..||..+-..|=.
T Consensus 22 t~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 22 TKFTAEQKERMLALAER 38 (80)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 47999999999986544
No 47
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=21.33 E-value=69 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=25.1
Q ss_pred hcHHHHHHHHHHcCceeec-------C----CcceeecCCCCcccc
Q 033388 65 ADLSLAQAIVDSAGVIVQS-------A----DLTICYDERGAKYEL 99 (120)
Q Consensus 65 ~Dl~tAQ~IldaAgitlp~-------g----dL~~~YDe~G~~Y~l 99 (120)
.|++.+.+-|.++|+++-. + ...-+.|-.||..+|
T Consensus 95 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl 140 (152)
T 3huh_A 95 TPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEI 140 (152)
T ss_dssp SCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEE
T ss_pred CCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEE
Confidence 4889999999999998632 1 122467888887775
No 48
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy, VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A 3bql_A 3cml_A 3cpz_A
Probab=21.05 E-value=42 Score=27.68 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=20.1
Q ss_pred HHHHHhhhhccccCCCccHHHHHHHHHHHH
Q 033388 35 LMQLRDEFWDTAPHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 35 L~~~R~EFWdTr~~y~Gr~EIW~aLraA~e 64 (120)
..+.|+++|+.- |++||.||-=++.
T Consensus 180 ~~~lREdWW~~N-----r~~VWkAmtC~~~ 204 (360)
T 3bqk_A 180 STENVNAWWKGI-----EREMWDAVRCAIT 204 (360)
T ss_dssp CHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHH-----HHHHHhhhccccc
Confidence 457899999854 7899999987764
No 49
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=20.96 E-value=20 Score=29.51 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 033388 1 MGCAGSSQSK 10 (120)
Q Consensus 1 mgc~~s~~~~ 10 (120)
|||..|+..+
T Consensus 3 mgc~~sk~~~ 12 (352)
T 3bh7_B 3 MGCFFSKRRK 12 (352)
T ss_dssp ----------
T ss_pred ccceeecccc
Confidence 9999999664
No 50
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=20.93 E-value=44 Score=26.17 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=16.1
Q ss_pred cCCCccHHHHHHHHHHHH
Q 033388 47 PHYGGRKEIWDALRAAAE 64 (120)
Q Consensus 47 ~~y~Gr~EIW~aLraA~e 64 (120)
+.|+||.||=+|.|..++
T Consensus 141 ~~YggR~EIv~A~r~i~~ 158 (245)
T 2d2r_A 141 LNYGSKNELSRAFKSLLE 158 (245)
T ss_dssp CSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 489999999999999876
No 51
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=20.89 E-value=1.7e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHh------------------cHHHHHHHHHHcC----ceeecCCcceeecCCCCccccCceecccCc
Q 033388 52 RKEIWDALRAAAEA------------------DLSLAQAIVDSAG----VIVQSADLTICYDERGAKYELPKYVLSEPT 108 (120)
Q Consensus 52 r~EIW~aLraA~e~------------------Dl~tAQ~IldaAg----itlp~gdL~~~YDe~G~~Y~lP~~v~s~P~ 108 (120)
.+++|+.++..++. -++.|+.-+..+| |.+-.+|+...-- . ..|+ .|++||-
T Consensus 236 ~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-~-~~fD---~Iv~NPP 309 (384)
T 3ldg_A 236 DEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-N-KING---VLISNPP 309 (384)
T ss_dssp CHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-C-CCSC---EEEECCC
T ss_pred CHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-c-CCcC---EEEECCc
Confidence 67999999987652 3888898888888 5677787753211 1 1333 4777775
No 52
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=20.59 E-value=78 Score=19.04 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHcCceee
Q 033388 66 DLSLAQAIVDSAGVIVQ 82 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp 82 (120)
|++.+..-|.++|+.+-
T Consensus 83 d~~~~~~~l~~~G~~~~ 99 (126)
T 2p25_A 83 HIEEVIAFLNEQGIETE 99 (126)
T ss_dssp CHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHcCCccc
Confidence 78888888999998764
No 53
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=20.53 E-value=61 Score=21.53 Aligned_cols=34 Identities=3% Similarity=-0.059 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHcCceee-------cCCcceeecCCCCcccc
Q 033388 66 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 99 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp-------~gdL~~~YDe~G~~Y~l 99 (120)
|++.+.+-|.++|+++. .|....+.|-.||..+|
T Consensus 80 dvd~~~~~l~~~G~~i~~~p~~~~~G~~~~~~DPdG~~iel 120 (148)
T 3rhe_A 80 MVDEIHRQWSDKEISIIQPPTQMDFGYTFVGVDPDEHRLRI 120 (148)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHhCCCEEEeCCeecCCCcEEEEECCCCCEEEE
Confidence 58888888888998873 23223677888887774
No 54
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=20.44 E-value=38 Score=25.93 Aligned_cols=18 Identities=39% Similarity=0.755 Sum_probs=13.1
Q ss_pred eeecCCCCccccCceecccCcccc
Q 033388 88 ICYDERGAKYELPKYVLSEPTNLI 111 (120)
Q Consensus 88 ~~YDe~G~~Y~lP~~v~s~P~Nl~ 111 (120)
+++|..|+.| |+|+| |+.
T Consensus 229 ia~d~~G~ly-----IvsE~-n~~ 246 (255)
T 3qqz_A 229 VAMDASGNIY-----IVSEP-NRF 246 (255)
T ss_dssp EEECTTCCEE-----EEETT-TEE
T ss_pred eEECCCCCEE-----EEcCC-ceE
Confidence 6788888755 77888 654
No 55
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=20.44 E-value=57 Score=19.98 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHcCceeecC-----------CcceeecCCCCcccc
Q 033388 66 DLSLAQAIVDSAGVIVQSA-----------DLTICYDERGAKYEL 99 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~g-----------dL~~~YDe~G~~Y~l 99 (120)
|++.+..-|.++|+++-.+ ...-+.|-.||..+|
T Consensus 83 d~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 127 (133)
T 3ey7_A 83 VLSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPDGNLIEV 127 (133)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCCCCEEEE
Confidence 4888888999999987432 122467777777664
No 56
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=20.38 E-value=1.8e+02 Score=23.34 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHh------------------cHHHHHHHHHHcC----ceeecCCcceeecCCCCccccCceecccCc
Q 033388 52 RKEIWDALRAAAEA------------------DLSLAQAIVDSAG----VIVQSADLTICYDERGAKYELPKYVLSEPT 108 (120)
Q Consensus 52 r~EIW~aLraA~e~------------------Dl~tAQ~IldaAg----itlp~gdL~~~YDe~G~~Y~lP~~v~s~P~ 108 (120)
.+++|+.++..++. -++.|+.-+..+| |.+-.+|+...- ....|+ .|+++|-
T Consensus 243 ~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~--~~~~fD---~Iv~NPP 316 (393)
T 3k0b_A 243 PKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ--TEDEYG---VVVANPP 316 (393)
T ss_dssp CHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCC--CCCCSC---EEEECCC
T ss_pred CHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCC--CCCCCC---EEEECCC
Confidence 57999999987652 3788888888887 567777775211 112343 4777775
No 57
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=20.37 E-value=19 Score=27.66 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=11.2
Q ss_pred hhhccccCCC-ccHH
Q 033388 41 EFWDTAPHYG-GRKE 54 (120)
Q Consensus 41 EFWdTr~~y~-Gr~E 54 (120)
-||||+..|+ |+.|
T Consensus 48 ~~~DTA~~Yg~G~sE 62 (327)
T 3eau_A 48 NLFDTAEVYAAGKAE 62 (327)
T ss_dssp CEEEEETTGGGGHHH
T ss_pred CEEECccccCCCChH
Confidence 4999999998 5555
No 58
>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2
Probab=20.34 E-value=70 Score=19.45 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHcCceeec-------C-CcceeecCCCCccc
Q 033388 66 DLSLAQAIVDSAGVIVQS-------A-DLTICYDERGAKYE 98 (120)
Q Consensus 66 Dl~tAQ~IldaAgitlp~-------g-dL~~~YDe~G~~Y~ 98 (120)
|++.+..-|.++|+++-. | ....+.|-.||..+
T Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 114 (119)
T 2pjs_A 74 NFDEVHARILKAGLPIEYGPVTEAWGVQRLFLRDPFGKLIN 114 (119)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHCCCccccCCccCCCccEEEEEECCCCCEEE
Confidence 788888889999987632 2 11245566666554
Done!