BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033389
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 82/100 (82%), Gaps = 4/100 (4%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V+F GP+ + Y+GGVWK+RV+LPD
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ ++
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 72/91 (79%)
Query: 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSI 66
R++ D KL+M+ Y +E+ N Q+F V F+GP ++Y+GG+WK+ V LPD YP+ SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 67 GFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
GF+NK+ HPNVDE SGSVCLDVINQTW+P++
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
++RREMD M+L S KV +D + EF+VEF GP+ + Y+ G W + V+LP YP+KSP
Sbjct: 14 NRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
SIGF N+I HPNVDE SGSVCLDVINQTW+PM+
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +C
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 87
Query: 86 LDVINQTWSPMFGKPSILF 104
LDV+ WSP ++L
Sbjct: 88 LDVLKTNWSPALQIRTVLL 106
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +C
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 89
Query: 86 LDVINQTWSPMFGKPSILF 104
LDV+ WSP ++L
Sbjct: 90 LDVLKTNWSPALQIRTVLL 108
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 91 CLDILRSQWSPALTVSKVL-----LSICSLL 116
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 44 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 103 CLDILRSQWSPALTVSKVL-----LSICSLL 128
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 28 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 87 CLDILRSQWSPALTVSKVL-----LSICSLL 112
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 81 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 140
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 141 TGAICLDILKDQWA 154
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
K E + F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L
Sbjct: 24 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 83
Query: 81 SGSVCLDVINQTWSPMFGKPSILF 104
G +CLD++ WSP ++L
Sbjct: 84 -GRICLDILKDKWSPALQIRTVLL 106
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 30 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 89
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 90 TGAICLDILKDQWA 103
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 29 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 88
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 89 TGAICLDILKDQWA 102
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 32 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 91
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 92 TGAICLDILKDQWA 105
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
K E + F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L
Sbjct: 22 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 81
Query: 81 SGSVCLDVINQTWSPMFGKPSILF 104
G +CLD++ WSP ++L
Sbjct: 82 -GRICLDILKDKWSPALQIRTVLL 104
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 45 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 104
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 105 TGAICLDILKDQWA 118
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
K E + F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L
Sbjct: 26 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85
Query: 81 SGSVCLDVINQTWSPMFGKPSILF 104
G +CLD++ WSP ++L
Sbjct: 86 -GRICLDILKDKWSPALQIRTVLL 108
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
K E + F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L
Sbjct: 27 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 86
Query: 81 SGSVCLDVINQTWSPMFGKPSILF 104
G +CLD++ WSP ++L
Sbjct: 87 -GRICLDILKDKWSPALQIRTVLL 109
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
K E + F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L
Sbjct: 29 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 88
Query: 81 SGSVCLDVINQTWSPMFGKPSILF 104
G +CLD++ WSP ++L
Sbjct: 89 -GRICLDILKDKWSPALQIRTVLL 111
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 95 CLDILRSQWSPALTISKVL-----LSICSLL 120
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 95 CLDILRSQWSPALTISKVL-----LSICSLL 120
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 31 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 90 CLDILRSQWSPALTISKVL-----LSICSLL 115
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 85 CLDILRSQWSPALTISKVL-----LSICSLL 110
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 103 CLDILRSQWSPALTISKVL-----LSICSLL 128
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 87 CLDILRSQWSPALTISKVL-----LSICSLL 112
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 84 CLDILRSQWSPALTISKVL-----LSICSLL 109
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIS 87
Query: 86 LDVINQTWSPMFGKPSILF 104
LDV+ WSP ++L
Sbjct: 88 LDVLKTNWSPALQIRTVLL 106
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 87 CLDILRSQWSPALTISKVL-----LSICSLL 112
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 87 CLDILRSQWSPALTISKVL-----LSICSLL 112
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP ES YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 88 CLDILRSQWSPALTISKVL-----LSICSLL 113
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGGV+ + + P YP+K P + F KIYHPN++ +GS+
Sbjct: 31 VGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 90 CLDILRSQWSPALTVSKVL-----LSICSLL 115
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 34 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 92
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 93 CLDILRSQWSPALTISKVL-----LSICSLL 118
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ WSP +L ++IC +L
Sbjct: 87 CLDILRSQWSPALTISKVL-----LSICSLL 112
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD + WSP +L ++IC +L
Sbjct: 87 CLDALRSQWSPALTISKVL-----LSICSLL 112
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + + F + NGP + Y+GG +K+ + LP+ YP + P + F+ KIYHPN+D+L G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFGKPSILF 104
CLD++ WSP ++L
Sbjct: 85 CLDILKDKWSPALQIRTVLL 104
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + + F + NGP + Y+GG +K+ + LP+ YP + P + F+ KIYHPN+D+L G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFGKPSILF 104
CLD++ WSP ++L
Sbjct: 85 CLDILKDKWSPALQIRTVLL 104
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
CLD++ W P +L ++IC +L
Sbjct: 87 CLDILRSQWGPALTISKVL-----LSICSLL 112
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S Y GGV+ + + P YP+K P I F KIYHPN++ +G++
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA-NGNI 85
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118
CLD++ WSP +L ++IC +L +
Sbjct: 86 CLDILKDQWSPALTLSKVL-----LSICSLLTDA 114
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 3 SPSKRREMDLMKLMMS-DYKVEMINDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAY 59
S SKR + +L L+MS D + DG + ++ +GPK++ Y+ +K+ +E P Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 60 PYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILF 104
PYK P + F +HPNVD+ SG++CLD++ + W+ + +IL
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILL 112
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 11 DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70
DL + + + + D + + GP +S+YQGGV+ + V P YP+K P I F
Sbjct: 18 DLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTT 77
Query: 71 KIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQML 115
KIYHPN++ +GS+ LD++ WSP +L ++IC +L
Sbjct: 78 KIYHPNINS-NGSIKLDILRSQWSPALTVSKVL-----LSICSLL 116
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHP +D L G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRL-GRIS 87
Query: 86 LDVINQTWSPMFGKPSILF 104
LDV+ WSP ++L
Sbjct: 88 LDVLKTNWSPALQIRTVLL 106
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ ++ G +K+ +E
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSIL 103
+ YP K P++ F++K++HPNV GS+CLD++ WSP + +IL
Sbjct: 64 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAIL 109
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ ++ G +K+ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSIL 103
+ YP K P++ F++K++HPNV GS+CLD++ WSP + +IL
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAIL 106
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP 95
F GP + Y+GG + + +E+P YP+K P + F K+YHPN+ ++G++CLD++ WSP
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSP 98
Query: 96 MFGKPSILFPSTHVTICQMLQS 117
+ I S +++ +LQS
Sbjct: 99 V-----ITLKSALISLQALLQS 115
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
LD++ WSP +L ++IC +L
Sbjct: 87 SLDILRSQWSPALTISKVL-----LSICSLL 112
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP 95
F GP + Y+GG + + +E+P YP+K P + F K+YHPN+ ++G++CLD++ WSP
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSP 97
Query: 96 MFGKPSILFPSTHVTICQMLQS 117
+ I S +++ +LQS
Sbjct: 98 V-----ITLKSALISLQALLQS 114
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
LD++ WSP +L ++IC +L
Sbjct: 88 SLDILRSQWSPALTISKVL-----LSICSLL 113
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
LD++ WSP +L ++IC +L
Sbjct: 85 SLDILRSQWSPALTISKVL-----LSICSLL 110
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
LD++ WSP +L ++IC +L
Sbjct: 84 SLDILRSQWSPALKISKVL-----LSICSLL 109
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSIL 103
+ YP K P++ F++K++HPNV GS+CLD++ WSP + SIL
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL 106
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFGKPSILFPSTHVTICQML 115
LD++ WSP +L ++IC +L
Sbjct: 103 XLDILRSQWSPALTISKVL-----LSICSLL 128
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSI 66
R DL K S + D + + GP +S Y GGV+ + + P YP+K P +
Sbjct: 8 RELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 67 GFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILF 104
F +IYHPN++ +GS+CLD++ WSP +L
Sbjct: 68 NFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLL 104
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 11 DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70
DL K ++ + D M + GP++S Y GGV+ + + P YP+K P + F
Sbjct: 32 DLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT 91
Query: 71 KIYHPNVDELSGSVCLDVINQTWSPMFGKPSILF 104
KIYHPN++ G++CLD++ WSP +L
Sbjct: 92 KIYHPNINS-QGAICLDILKDQWSPALTISKVLL 124
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGG++ + V P YP+K+P + F+ K+YHPN+++ +G +
Sbjct: 29 VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVI 87
Query: 85 CLDVINQTWSPMFGKPSILF 104
CLD++ WSP +L
Sbjct: 88 CLDILKDQWSPALTLSRVLL 107
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 11 DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70
DL + + + + D M + GP +S YQGGV+ + + P YP+K P + F
Sbjct: 12 DLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 71
Query: 71 KIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQML 115
+IYHP ++ +GS+ LD++ WSP +L ++IC +L
Sbjct: 72 RIYHPAINS-NGSISLDILRSQWSPALTISKVL-----LSICSLL 110
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
GP+ + Y+GG + + + +P+ YPY P I FV KI+HPN+ +G++CLDV+ WSP
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPAL 120
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFN----GPKESSYQGGVWKIRVELP 56
MS+P+++R M K + D + + +N GP ++ + GG +K+ ++
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSIL 103
+ YP K P++ FV++++HPN+ GS+CLD++ WSP++ +IL
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL 106
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 1 MSSPSKRREMDLMKLMMSD----YKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
MS+P++RR M K M D + D + + GP ++ Y+ G +++ +E
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSIL 103
+ YP K P + F+++++HPNV +G +CLD++ W+P + SIL
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASIL 106
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
GP + Y+GG + + + +P YPY P + FV KI+HPN+ +G++CLD++ WSP
Sbjct: 83 GPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL 142
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 6 KRREMDLMKLMMS-DYKVEMI--NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYK 62
KR + +LM LMMS D + +D + ++ +G + Y+ +K+ +E P YPY
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILF 104
+P++ F+ YHPNVD G++ LD++ + WS ++ +IL
Sbjct: 93 APTVKFLTPCYHPNVD-TQGNISLDILKEKWSALYDVRTILL 133
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86
D M + + G + Y+ GV+K+ V +P+ YP++ P I F+ IYHPN+D +G +CL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICL 89
Query: 87 DVI----NQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120
DV+ W P ++L T Q+L S N
Sbjct: 90 DVLKLPPKGAWRPSLNIATVL------TSIQLLMSEPN 121
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 1 MSSPSKRREMDLMKLMMS---DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
+S+ +KR + +L + + + D + E+ GP S Y+GGV+ + +
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQML 115
YP+K P + F +IYH N++ G +CLD++ WSP +L ++IC +L
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVL-----LSICSLL 157
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 2 SSPSKRREMDLMKLMMS---DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDA 58
S+ +KR + +L ++ + + D + E+ GP S Y+GGV+ + +
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 59 YPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQML 115
YP+K P + F +IYH N++ G +CLD++ WSP +L ++IC +L
Sbjct: 62 YPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVL-----LSICSLL 112
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSP 95
P Y G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ + W P
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKP 97
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSP 95
P Y G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ + W P
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKP 99
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 1 MSSPSKRREM-----DLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVE 54
M SPS ++ + L + + ++V ++++G + + V GP + Y+GG +K R++
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 55 LPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P YPY P+ F+ K++HPN+ E +G VC+ +++
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILH 97
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
+R+ +L K + + +I+D + + V GP ++ Y+GGV+K + P YP + P
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFG 98
+ F+ +I+HPNVD+ +G VC+ ++++ +G
Sbjct: 83 KMKFITEIWHPNVDK-NGDVCISILHEPGEDKYG 115
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI-NQTWSP 95
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I ++ W P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKP 96
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI-NQTWSP 95
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I ++ W P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKP 99
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 2 SSPSKRREM-----DLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVEL 55
SPS ++ + L + + ++V ++++G + + V GP + Y+GG +K R++
Sbjct: 1 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKF 60
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P YPY P+ F+ K++HPN+ E +G VC+ +++
Sbjct: 61 PIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILH 94
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
K++ D+ ++ + + +++D + ++ V GP ++ Y+GG +K ++ P YP K P
Sbjct: 9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 68
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFG 98
+ F+++I+HPN+D+ G+VC+ +++ +G
Sbjct: 69 KMKFISEIWHPNIDK-EGNVCISILHDPGDDKWG 101
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDV 88
+Q++ G + +++ GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 96
Query: 89 IN--QTWSPMF 97
+N Q W P
Sbjct: 97 LNEDQDWRPAI 107
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDV 88
+Q++ G + +++ GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 98
Query: 89 IN--QTWSPMF 97
+N Q W P
Sbjct: 99 LNEDQDWRPAI 109
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86
+ + + V GP+ + Y GG++++++ L +P P F+ KI+HPNV +G +C+
Sbjct: 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICV 98
Query: 87 DVINQTWSPMFGKPSILF 104
+V+ + W+ G +L
Sbjct: 99 NVLKRDWTAELGIRHVLL 116
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 11 DLMKLMMSDYK---VEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67
D L ++YK + +++ M E+ VE G + S +QG V+++ + Y Y P +
Sbjct: 31 DFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
Query: 68 FVNKIYHPNVDELSGSVCLDVIN--QTWSPMFGKPSILF 104
F+ +HPNVD +G C+D ++ + W+ + SIL
Sbjct: 91 FITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILL 129
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFG 98
P E Y G ++ + YP + P + + KI+HPN+D L G+VCL+++ + WSP
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALD 130
Query: 99 KPSIL 103
SI+
Sbjct: 131 LQSII 135
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 18 SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77
SD ++++N + V G ++S++GG++K+ + P+ YP + P F ++HPNV
Sbjct: 38 SDGGLDLMN-----WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV 92
Query: 78 DELSGSVCLDVINQT--WSPMFGKPSILF 104
SG+VCL ++N+ W P IL
Sbjct: 93 YP-SGTVCLSILNEEEGWKPAITIKQILL 120
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFG 98
P E Y+ G + ++ YP+ P + +YHPN+D L G+VCL+++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID-LEGNVCLNILREDWKPVLT 101
Query: 99 KPSILF 104
SI++
Sbjct: 102 INSIIY 107
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEW 113
Query: 94 SPMF 97
+P++
Sbjct: 114 TPVW 117
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQT------ 92
P E YQGG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP 95
W+P
Sbjct: 112 WAP 114
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMF 97
+P++
Sbjct: 114 TPVW 117
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMF 97
+P++
Sbjct: 114 TPVW 117
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ------T 92
P E YQGG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP 95
W+P
Sbjct: 112 WAP 114
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFG 98
P E Y+ G + ++ YP+ P + +YHPN+D L G+V L+++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LEGNVALNILREDWKPVLT 121
Query: 99 KPSILF 104
SI++
Sbjct: 122 INSIIY 127
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRP 108
Query: 96 MFGKPSILF 104
IL
Sbjct: 109 AITIKQILL 117
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MFGKPSILF 104
IL
Sbjct: 108 AITIKQILL 116
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 105
Query: 96 MFGKPSILF 104
IL
Sbjct: 106 AITIKQILL 114
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 106
Query: 96 MFGKPSILF 104
IL
Sbjct: 107 AITIKQILL 115
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFGKPSILF 104
IL
Sbjct: 109 AITIKQILL 117
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFGKPSILF 104
IL
Sbjct: 109 AITIKQILL 117
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFGKPSILF 104
IL
Sbjct: 109 AITIKQILL 117
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MFGKPSILF 104
IL
Sbjct: 108 AITIKQILL 116
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 110
Query: 96 MFGKPSILF 104
IL
Sbjct: 111 AITIKQILL 119
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HP V SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFGKPSILF 104
IL
Sbjct: 109 AITIKQILL 117
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
GP ++ Y GV+ ++E P YP P + F I HPN+ +G VC+ +++
Sbjct: 41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILH 94
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 1 MSSPSKRREMDLMKLMMS-----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
M+S KR + +L+ L + + + + ++ V+ G + Y+G +++ +
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 56 PDAYPYKSPSIGFV--NKIYHPNVDELSGSVCLDVINQTWSPMFGKPSI 102
YP+ SP + F N HP+V +G +CL ++ + WSP S+
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSV 127
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRP 105
Query: 96 MFGKPSILF 104
IL
Sbjct: 106 AITIKQILL 114
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRP 105
Query: 96 MFGKPSILF 104
IL
Sbjct: 106 AITIKQILL 114
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 27 DGMQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
D + + ++ P +S Y G +++ V D YP++ P++ FV +Y P V G +
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGI 105
Query: 85 CLDVINQTWSP 95
C ++N W+P
Sbjct: 106 CDRMVNDFWTP 116
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 34 VEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK-IYHPNVDELSGSVCLDVINQT 92
V++ G + + Y V+KI++ PD YP K P + F+ K H +V +G +CL V+
Sbjct: 54 VQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDD 112
Query: 93 WSPMFGKPSILFPSTHVTICQMLQSS 118
++P ++ +I ML S+
Sbjct: 113 YNPSLSISGLIL-----SIISMLSSA 133
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P + F +++HPN+ G VC+ +++
Sbjct: 68 LSPPKMRFTCEMFHPNIYP-DGRVCISILH 96
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P + F +++HPN+ G VC+ +++
Sbjct: 69 LSPPKMRFTCEMFHPNIYP-DGRVCISILH 97
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P + F +++HPN+ G VC+ +++
Sbjct: 65 LSPPKMRFTCEMFHPNIYP-DGRVCISILH 93
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
P + F +++HPN+ G VC+ +++
Sbjct: 71 LSPPKMRFTCEMFHPNIYP-DGRVCISILH 99
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86
+ ++ + V++ G + + Y V+K+++ PD YP K P + F+ K +G +CL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 87 DVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118
++ ++P ++ ++I ML S+
Sbjct: 93 SLLGDDYNPSLSISGLV-----LSIISMLSSA 119
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 2 SSPSKRREMDLMKLMMSDYK-----------VEMINDGMQEFYVEFNGPKESSYQGGVWK 50
S+ SKR + + DY E + + E++ GP+ + Y+GG +
Sbjct: 5 STSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYH 64
Query: 51 IRVELPDAYPYKSPSIGFVNKIYHPNVD-ELSGSVCLDVIN---QTWSPMFGKPSIL 103
++ P +P+K PSI + PN + + +CL + + TW+P + +IL
Sbjct: 65 GKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTIL 117
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 52 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 46 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 47 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 57 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLD 87
GP S+++ ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 48 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLD 87
GP S+++ ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 47 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 34 VEFNGPKESSYQGGVWKIRVELPDAYPYKSP-----SIGFVNKIYHPNVDELSGSVCLDV 88
V GP ++ Y G ++ V P YP P + G + ++PN+ G VCL +
Sbjct: 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSI 172
Query: 89 INQTWSPMFGKP 100
+N TW G+P
Sbjct: 173 LN-TW---HGRP 180
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 49 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 77 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|3NSW|A Chain A, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|B Chain B, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|C Chain C, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|D Chain D, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|E Chain E, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|F Chain F, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|G Chain G, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
Length = 106
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 16 MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67
M+S+ + E IND YV G SY W++ ++P P + PS G
Sbjct: 10 MLSEIRQEDINDVETVAYVTVTGKTARSYNLQYWRL-YDVPKTAPSQWPSFG 60
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 67 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|1XX1|A Chain A, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|B Chain B, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|C Chain C, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|D Chain D, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|2F9R|A Chain A, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|B Chain B, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|C Chain C, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|D Chain D, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
Length = 285
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 53 VELPDAYPYKSPSIGFVNKIYHPNVDELSGS-VCLDVINQTWSPMFGKPSILFPSTHVTI 111
L +A + + GF+NKIY+ +VD++S + LDV G I+ +V I
Sbjct: 208 ARLKEAIKSRDSANGFINKIYYWSVDKVSTTKAALDV---------GVDGIMTNYPNVLI 258
Query: 112 CQMLQSSYN 120
+ +S YN
Sbjct: 259 GVLKESGYN 267
>pdb|3MXN|A Chain A, Crystal Structure Of The Rmi Core Complex
pdb|4DAY|A Chain A, Crystal Structure Of The Rmi Core Complex With Mm2
Peptide From Fancm
Length = 157
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 13 MKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72
+ ++M+ E+ ++ F V G SS GG+W I ++ D Y + FV++I
Sbjct: 26 LSVLMASKPKEVTTVKVKAFIVTLTGNLSSS--GGIWSITAKVSDGTAY--LDVDFVDEI 81
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 20 YKVEMINDGMQEFYVEF-----NGPKESSYQGGVWKIRVE-------LPDAYPYKSPSIG 67
Y VE+IND + +++V+ + P S Q K +E D +P+ P +
Sbjct: 50 YSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVR 109
Query: 68 FVNKIYHPNVDELSGSVCLDVIN-QTWSPMFGKPSIL 103
V + G++C++++ Q WS + S++
Sbjct: 110 VVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 146
>pdb|2GSR|A Chain A, Structure Of Porcine Class Pi Glutathione S-Transferase
pdb|2GSR|B Chain B, Structure Of Porcine Class Pi Glutathione S-Transferase
Length = 207
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 22 VEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
V+M+NDG+++ ++ ++Y+ G K ELP+
Sbjct: 87 VDMVNDGVEDLRCKYATLIYTNYEAGKEKYVKELPE 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,922,231
Number of Sequences: 62578
Number of extensions: 160176
Number of successful extensions: 482
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 120
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)