Query 033389
Match_columns 120
No_of_seqs 127 out of 1015
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 6.7E-44 1.5E-48 248.0 11.5 109 4-118 6-118 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 6.2E-44 1.3E-48 244.3 9.2 109 4-118 2-113 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 2.2E-41 4.8E-46 226.9 9.0 112 1-118 1-116 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 8.7E-40 1.9E-44 228.4 13.4 111 1-118 1-114 (152)
5 PLN00172 ubiquitin conjugating 100.0 7E-39 1.5E-43 222.7 13.2 108 5-118 3-113 (147)
6 KOG0421 Ubiquitin-protein liga 100.0 1.2E-38 2.7E-43 216.7 6.0 111 4-120 30-143 (175)
7 KOG0418 Ubiquitin-protein liga 100.0 3.6E-37 7.9E-42 217.3 9.4 113 1-118 1-119 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 1.9E-36 4.1E-41 208.3 10.0 108 5-118 10-131 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-35 4.6E-40 203.1 9.1 106 7-118 1-111 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 8.3E-35 1.8E-39 195.6 8.8 112 1-118 1-130 (165)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.5E-34 7.6E-39 197.3 11.7 107 6-118 2-112 (141)
12 KOG0424 Ubiquitin-protein liga 100.0 2.2E-34 4.8E-39 195.6 10.0 112 1-118 1-123 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 7.5E-33 1.6E-37 191.5 11.5 107 6-118 1-112 (145)
14 KOG0416 Ubiquitin-protein liga 100.0 8E-32 1.7E-36 187.7 5.9 104 1-104 1-104 (189)
15 KOG0427 Ubiquitin conjugating 100.0 5.3E-31 1.1E-35 177.0 9.3 108 4-118 16-127 (161)
16 KOG0422 Ubiquitin-protein liga 100.0 1.5E-30 3.3E-35 176.1 8.4 108 4-118 3-115 (153)
17 KOG0420 Ubiquitin-protein liga 100.0 4.2E-29 9E-34 174.3 6.6 108 4-118 29-141 (184)
18 KOG0894 Ubiquitin-protein liga 100.0 2.3E-28 5.1E-33 176.0 10.7 108 1-118 1-118 (244)
19 KOG0423 Ubiquitin-protein liga 99.9 1.2E-27 2.7E-32 167.4 4.2 108 5-118 12-122 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 5.5E-23 1.2E-27 151.0 8.1 106 4-117 12-122 (314)
21 KOG0896 Ubiquitin-conjugating 99.7 3.9E-16 8.5E-21 105.4 7.0 112 4-120 6-126 (138)
22 KOG0895 Ubiquitin-conjugating 99.6 1.6E-16 3.5E-21 134.8 5.5 97 15-117 866-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 5E-15 1.1E-19 125.9 10.1 109 4-118 283-405 (1101)
24 KOG0429 Ubiquitin-conjugating 99.6 8.6E-15 1.9E-19 106.3 8.7 105 8-118 24-134 (258)
25 KOG0897 Predicted ubiquitin-co 98.7 4.4E-09 9.5E-14 69.5 1.8 62 49-115 13-75 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 4.1E-08 8.9E-13 67.1 5.1 69 45-119 34-108 (133)
27 PF05743 UEV: UEV domain; Int 98.2 3.1E-06 6.7E-11 57.1 4.6 79 29-118 32-118 (121)
28 KOG2391 Vacuolar sorting prote 96.6 0.011 2.4E-07 46.2 7.4 66 37-104 56-129 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.6 0.0005 1.1E-08 47.5 -0.1 54 49-103 77-135 (161)
30 PF14462 Prok-E2_E: Prokaryoti 95.9 0.11 2.4E-06 35.1 8.2 56 16-72 10-67 (122)
31 PF05773 RWD: RWD domain; Int 95.8 0.026 5.6E-07 36.3 5.0 47 26-72 26-74 (113)
32 smart00591 RWD domain in RING 95.1 0.16 3.5E-06 32.2 6.9 27 45-71 39-65 (107)
33 PF14457 Prok-E2_A: Prokaryoti 94.3 0.042 9.1E-07 38.8 2.8 61 50-116 56-125 (162)
34 KOG3357 Uncharacterized conser 93.1 0.084 1.8E-06 36.1 2.4 94 5-102 29-137 (167)
35 KOG0309 Conserved WD40 repeat- 89.3 2.3 5E-05 37.1 7.7 53 18-71 437-491 (1081)
36 PF09765 WD-3: WD-repeat regio 84.4 1.3 2.9E-05 34.1 3.5 85 6-116 102-187 (291)
37 KOG4018 Uncharacterized conser 80.1 7.2 0.00016 28.8 5.8 39 28-68 29-70 (215)
38 PF06113 BRE: Brain and reprod 74.0 5.4 0.00012 31.4 3.9 28 46-74 305-332 (333)
39 PF03366 YEATS: YEATS family; 63.9 28 0.00061 21.7 5.0 43 30-74 2-44 (84)
40 PF06113 BRE: Brain and reprod 62.9 13 0.00028 29.3 4.0 34 43-76 61-95 (333)
41 PF14455 Metal_CEHH: Predicted 56.8 65 0.0014 22.8 6.2 81 33-117 40-122 (177)
42 cd00421 intradiol_dioxygenase 56.3 21 0.00045 24.4 3.8 26 45-70 64-90 (146)
43 cd03457 intradiol_dioxygenase_ 51.4 27 0.00058 25.2 3.8 26 45-70 85-110 (188)
44 cd03459 3,4-PCD Protocatechuat 46.6 37 0.00079 23.8 3.8 25 46-70 72-101 (158)
45 PF14135 DUF4302: Domain of un 46.1 43 0.00092 24.7 4.3 69 3-79 9-101 (235)
46 KOG4445 Uncharacterized conser 41.8 36 0.00079 26.7 3.4 26 46-71 44-69 (368)
47 PF00845 Gemini_BL1: Geminivir 41.8 56 0.0012 24.9 4.3 46 28-74 101-155 (276)
48 smart00340 HALZ homeobox assoc 40.4 20 0.00043 19.7 1.3 13 4-16 20-32 (44)
49 TIGR00628 ung uracil-DNA glyco 36.4 29 0.00062 25.6 2.0 57 7-66 19-86 (212)
50 PF11745 DUF3304: Protein of u 34.8 21 0.00046 23.6 1.0 22 80-101 49-70 (118)
51 COG3866 PelB Pectate lyase [Ca 32.6 82 0.0018 24.9 4.0 39 31-70 198-240 (345)
52 TIGR02423 protocat_alph protoc 32.2 77 0.0017 22.9 3.7 24 46-69 96-124 (193)
53 TIGR03737 PRTRC_B PRTRC system 32.1 56 0.0012 24.4 3.0 19 70-89 131-152 (228)
54 KOG3696 Aspartyl beta-hydroxyl 32.0 39 0.00084 26.6 2.2 35 45-79 286-325 (334)
55 KOG3203 Mitochondrial/chloropl 31.2 26 0.00057 24.7 1.0 14 71-86 50-63 (165)
56 PF04881 Adeno_GP19K: Adenovir 30.2 50 0.0011 22.6 2.2 30 26-55 44-74 (139)
57 cd03463 3,4-PCD_alpha Protocat 29.9 90 0.002 22.4 3.7 24 46-69 92-120 (185)
58 PF14460 Prok-E2_D: Prokaryoti 27.7 69 0.0015 22.6 2.7 19 70-89 90-111 (175)
59 PF09606 Med15: ARC105 or Med1 26.8 21 0.00046 31.4 0.0 25 47-71 714-738 (799)
60 KOG1047 Bifunctional leukotrie 26.6 71 0.0015 27.2 3.0 29 42-71 248-279 (613)
61 cd05845 Ig2_L1-CAM_like Second 26.2 1.8E+02 0.0039 18.4 4.4 26 44-71 16-41 (95)
62 PF09458 H_lectin: H-type lect 24.5 1E+02 0.0022 17.8 2.8 21 49-70 3-23 (72)
63 KOG0177 20S proteasome, regula 23.7 24 0.00052 25.7 -0.2 24 81-104 135-158 (200)
64 COG2819 Predicted hydrolase of 21.4 1.6E+02 0.0035 22.5 3.8 30 41-70 15-46 (264)
65 PF06675 DUF1177: Protein of u 21.4 69 0.0015 24.5 1.8 30 39-68 180-209 (276)
66 PRK05254 uracil-DNA glycosylas 21.4 68 0.0015 23.8 1.8 28 17-46 35-71 (224)
67 PF09943 DUF2175: Uncharacteri 20.8 1E+02 0.0022 20.1 2.3 19 31-51 2-20 (101)
68 PF01107 MP: Viral movement pr 20.6 2.7E+02 0.0058 19.7 4.7 38 18-56 130-168 (189)
69 TIGR02439 catechol_proteo cate 20.5 1.6E+02 0.0035 22.7 3.7 25 46-70 180-222 (285)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-44 Score=248.03 Aligned_cols=109 Identities=36% Similarity=0.778 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~~~---~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+||++|++++ +++++++.+.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.++|||||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~- 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD- 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-
Confidence 789999999744 567999999988 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|+++|+|++++++||+ +|+++|.|+
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILl-----sl~slL~~P 118 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILL-----SLQSLLLSP 118 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHH-----HHHHHHcCC
Confidence 7999999999999999999999999 999999983
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-44 Score=244.26 Aligned_cols=109 Identities=33% Similarity=0.753 Sum_probs=103.5
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||.||++ +.+++|+++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 3579999995 55778999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.|.||+|+|++.|+|+++|++||+ +|+++|.+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vll-----sI~sLL~~P 113 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLL-----SICSLLSDP 113 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHH-----HHHHHhcCC
Confidence 999999999999999999999999 999999875
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=226.93 Aligned_cols=112 Identities=31% Similarity=0.684 Sum_probs=105.2
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||+ |.|||++|++ +.++.|+++.|.++|+++|.+.|.||.+|||+||+|++.|.|+++||++||.|+|++..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 888 5667888775 556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|| .+|.+|+|+|+..|+|.|++.+||+ +||+||.++
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILt-----siQslL~dP 116 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILT-----SIQSLLNDP 116 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHH-----HHHHHhcCC
Confidence 99 6999999999999999999999999 999999865
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.7e-40 Score=228.37 Aligned_cols=111 Identities=34% Similarity=0.685 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHh---CCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcc
Q 033389 1 MSSPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 1 Ms~~~~Rl~~el~~---~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 77 (120)
|| +.|||++|+++ .+.+|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 68999999864 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 78 DELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+ .+|.||+++|.++|+|++|+++||+ +|+++|.+.
T Consensus 80 ~-~~G~iCl~iL~~~W~p~~ti~~iL~-----~i~~ll~~P 114 (152)
T PTZ00390 80 D-KLGRICLDILKDKWSPALQIRTVLL-----SIQALLSAP 114 (152)
T ss_pred C-CCCeEECccCcccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 9 5999999999999999999999999 999999875
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=7e-39 Score=222.75 Aligned_cols=108 Identities=31% Similarity=0.685 Sum_probs=102.0
Q ss_pred HHHHHHHHHh---CCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 5 SKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 5 ~~Rl~~el~~---~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
.+||++|+++ .+++++++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+ .+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CC
Confidence 5899998864 4578999999999999999999999999999999999999999999999999999999999999 59
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 82 GSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|.||+++|.++|+|++|+++||+ +|+++|.++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~-----~i~~ll~~P 113 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLL-----SISSLLTDP 113 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 99999999999999999999999 999999865
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=216.67 Aligned_cols=111 Identities=35% Similarity=0.740 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhCCC---CCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLMKLMM---SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~~~~~---~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
..|||++||+.+.. +||++.|++||++.|..+|.||++|+|+|-.|++.+.||.+||++||.|+|.|+.|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 47999999998764 6899999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~~ 120 (120)
.|.||+|+|++.|+..|.+++||+ +||++|-++-|
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILL-----SiQSLLGEPNn 143 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILL-----SIQSLLGEPNN 143 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHH-----HHHHHhCCCCC
Confidence 999999999999999999999999 99999976543
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=217.31 Aligned_cols=113 Identities=30% Similarity=0.749 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHhCC------CCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCccc
Q 033389 1 MSSPSKRREMDLMKLM------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 1 Ms~~~~Rl~~el~~~~------~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (120)
||-+.+|+++|.++.. ..||.+....+|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7778899999887543 4589999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 75 PNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 75 pnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|||...+|.||+|+|++.|++++|++++|+ +||++|++.
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLi-----slQalL~~p 119 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLI-----SLQALLCAP 119 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHH-----HHHHHHcCC
Confidence 999999999999999999999999999999 999999875
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=208.33 Aligned_cols=108 Identities=30% Similarity=0.678 Sum_probs=99.8
Q ss_pred HHHHHHHHHhCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033389 5 SKRREMDLMKLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 5 ~~Rl~~el~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~ 83 (120)
.+|-++||++.+.+|+++.+.++ |+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|++++|||||| .+|+
T Consensus 10 l~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy-~~G~ 88 (171)
T KOG0425|consen 10 LLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY-EDGD 88 (171)
T ss_pred HHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-CCCC
Confidence 34556677788889999998876 999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 84 VCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 84 icl~~l~-------------~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+++|. +.|+|.+|+++||+ +|.+||.++
T Consensus 89 vCISILH~pgdD~~gyE~~~erW~Pv~tvetIll-----SiIsmL~~P 131 (171)
T KOG0425|consen 89 VCISILHPPGDDPSGYELPSERWLPVQTVETILL-----SIISMLNSP 131 (171)
T ss_pred EEEEeecCCCCCcccCCChhhccCCccchhHhHH-----HHHHHHcCC
Confidence 9999993 57999999999999 999999875
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-35 Score=203.06 Aligned_cols=106 Identities=35% Similarity=0.759 Sum_probs=94.1
Q ss_pred HHHHHHH---hCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCC
Q 033389 7 RREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 7 Rl~~el~---~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G 82 (120)
||++|++ +.++.|+.+.+.++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 7777775 56789999999997 999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCC-CCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 83 SVCLDVINQ-TWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~-~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+||+++|.. .|+|++++.+||. +|+++|.+.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~-----~i~~ll~~p 111 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILL-----SIQSLLSEP 111 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHH-----HHHHHHHST
T ss_pred cchhhhhhcccCCcccccccHHH-----HHHHHHhCC
Confidence 999999985 5999999999999 999999765
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-35 Score=195.59 Aligned_cols=112 Identities=29% Similarity=0.624 Sum_probs=103.1
Q ss_pred CCC-HHHHHHHHHHhC---CCCCcEEEecC-CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccC
Q 033389 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~~---~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
|+. +.|||++|++++ +++||.+.|.+ ||+++|.+.|.||++|+|+||+|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 444 789999999754 67899998875 6899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 76 NVDELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 76 nV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||+ .+|+||+++|. ++|+|..+++.||+ ++.+||++.
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILL-----SV~SMLaEP 130 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILL-----SVVSMLAEP 130 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHH-----HHHHHHcCC
Confidence 999 69999999983 68999999999999 999999875
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.5e-34 Score=197.31 Aligned_cols=107 Identities=35% Similarity=0.787 Sum_probs=99.8
Q ss_pred HHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCC
Q 033389 6 KRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 6 ~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G 82 (120)
|||++|++ +.+..|+++.+.++|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 57777775 55668999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCCC-CCCCCChhhccccCCHHHHHHHHhcc
Q 033389 83 SVCLDVINQT-WSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.||+++|... |+|++++++||. +|+++|.+.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~-----~i~~~l~~p 112 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLL-----SLQSLLNEP 112 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHH-----HHHHHHhCC
Confidence 9999999877 999999999999 999999864
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=195.62 Aligned_cols=112 Identities=29% Similarity=0.566 Sum_probs=101.9
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +..||++|-+ +..+-|+.+.|.. .|+..|.+.|.|++||+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 666 6778888875 5567799998875 379999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCCC--CCCCCChhhccccCCHHHHHHHHhcc
Q 033389 72 IYHPNVDELSGSVCLDVINQT--WSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~~--W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|||||| .+|.||+++|.++ |+|+.||..||. +||+||.+.
T Consensus 81 l~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~-----gIqdLL~~P 123 (158)
T KOG0424|consen 81 LFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILL-----GIQDLLDTP 123 (158)
T ss_pred CcCCCcC-CCCcEehhhhccccCCCchhhHHHHHH-----HHHHHhcCC
Confidence 9999999 5999999999765 999999999999 999999864
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=7.5e-33 Score=191.46 Aligned_cols=107 Identities=35% Similarity=0.729 Sum_probs=98.7
Q ss_pred HHHHHHHH---hCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 6 KRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 6 ~Rl~~el~---~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
+||++|++ +..+.|+++.+.++ |+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+ .+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CC
Confidence 47777775 56677999888876 999999999999999999999999999999999999999999999999999 49
Q ss_pred CeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 82 GSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|.||++.|. ++|+|++++++||. +|+++|.+.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~-----~i~~~l~~p 112 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLL-----SIQSLLSEP 112 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 999999998 89999999999999 999999764
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-32 Score=187.67 Aligned_cols=104 Identities=71% Similarity=1.273 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 1 Ms~~~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
||+..||+..|++|+...+..+...++++.+++|.+.||+++||+||++++++.+|++||++.|+|.|.++|||||||..
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccCCCCCCCCCCChhhccc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILF 104 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~ 104 (120)
+|.||+|.+.+.|+|.|.+..|+.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfe 104 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFE 104 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999998876
No 15
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=176.97 Aligned_cols=108 Identities=30% Similarity=0.652 Sum_probs=100.8
Q ss_pred HHHHHHHHHHh---CCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCc-ccCcccC
Q 033389 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~~---~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~ 79 (120)
+.+||+||+.+ +++.|+... ..||+.+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|.|.|..++ .||+|+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 67999999964 467898877 678999999999999999999999999999999999999999999986 699999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
++|.||+++|.++|+|++++.+|++ +|.+||+|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvCl-----SIlSMLSSs 127 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCL-----SILSMLSSS 127 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHH-----HHHHHHccC
Confidence 7999999999999999999999999 999999874
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=176.08 Aligned_cols=108 Identities=29% Similarity=0.661 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCCc----EEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLMKLMMSDY----KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~~~~~~~~----~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+|+.|||..+...+. .+..++.|++.|++.|. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 67999999876554432 24566789999999999 89999999999999999999999999999999999999995
Q ss_pred CCCeEEccCC-CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVI-NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.|.+|+.++ .|+|+|+++.++||+ ++..++.+.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlq-----aLi~liN~P 115 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQ-----ALIALINDP 115 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHH-----HHHHHhcCC
Confidence 799999998 489999999999999 998887653
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-29 Score=174.28 Aligned_cols=108 Identities=30% Similarity=0.709 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCC-CCCcEEEec--CCCce--eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCccc
Q 033389 4 PSKRREMDLMKLM-MSDYKVEMI--NDGMQ--EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 4 ~~~Rl~~el~~~~-~~~~~~~~~--~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 78 (120)
+.-|+++|+.++. +++++.... .+++. +++++|. |+.+.|+||.|.|.+.+|+.||+.||+|+|.|+|||||||
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 5678888887654 456654333 23444 5999999 9999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|.||+++|+++|+|..++.+|+. +++.++.+.
T Consensus 108 -~~GnVCLnILRedW~P~lnL~sIi~-----GL~~LF~ep 141 (184)
T KOG0420|consen 108 -LDGNVCLNILREDWRPVLNLNSIIY-----GLQFLFLEP 141 (184)
T ss_pred -CcchHHHHHHHhcCccccchHHHHH-----HHHHHhccC
Confidence 5999999999999999999999999 999998653
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=175.96 Aligned_cols=108 Identities=21% Similarity=0.482 Sum_probs=96.7
Q ss_pred CCC--HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC--cc
Q 033389 1 MSS--PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IY 73 (120)
Q Consensus 1 Ms~--~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 73 (120)
|++ +.|||+||++ +++.+.+.+.|.++|+.+||..+.||++|||+||.|+..|.||++||++||.|+.+|| .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 555 7899999986 6677899999999999999999999999999999999999999999999999999994 23
Q ss_pred cCcccCCCCeEEccCC---CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 74 HPNVDELSGSVCLDVI---NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 HpnV~~~~G~icl~~l---~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
- .+-++|+++- .+.|+|.+++.+||. ++.++|.+.
T Consensus 81 k-----tntRLCLSiSDfHPdsWNP~WsVStILt-----GLlSFM~e~ 118 (244)
T KOG0894|consen 81 K-----TNTRLCLSISDFHPDSWNPGWSVSTILT-----GLLSFMTED 118 (244)
T ss_pred e-----cCceEEEeccccCcCcCCCcccHHHHHH-----HHHHHHhcC
Confidence 3 3468999776 489999999999999 999999875
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-27 Score=167.39 Aligned_cols=108 Identities=25% Similarity=0.579 Sum_probs=100.3
Q ss_pred HHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 5 SKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 5 ~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
.|.+.+|++ ..+++||.|.+.++|+...++.|.||.||||++|.|++.+.+..|||.+||+-.|.|+||||||. .+
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-aN 90 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-AN 90 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-cC
Confidence 577788886 45788999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 82 GSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|.||.+.|+.+|+|..+|+.||+ .|..+|..+
T Consensus 91 GEICVNtLKkDW~p~LGirHvLl-----tikCLLI~P 122 (223)
T KOG0423|consen 91 GEICVNTLKKDWNPSLGIRHVLL-----TIKCLLIEP 122 (223)
T ss_pred ceehhhhhhcccCcccchhhHhh-----hhheeeecC
Confidence 99999999999999999999999 888777543
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.5e-23 Score=150.96 Aligned_cols=106 Identities=24% Similarity=0.537 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhC--CCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 4 PSKRREMDLMKL--MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 4 ~~~Rl~~el~~~--~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
+.|||+||.+++ +.+.+.+.+.+||+|+||++|.||.||-|+||+|+.+|.||.+||++||.+..+|+--..- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 689999998755 4557889999999999999999999999999999999999999999999999999432222 35
Q ss_pred CeEEccCC---CCCCCCCCChhhccccCCHHHHHHHHhc
Q 033389 82 GSVCLDVI---NQTWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~~~~~~i~~~l~s 117 (120)
-+||+++- .+.|-|+|+|++.|+ +|+.+|-.
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALl-----AlIgFmPt 122 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALL-----ALIGFMPT 122 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHH-----HHHccccC
Confidence 68999886 589999999999999 99888744
No 21
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.9e-16 Score=105.38 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCC----CCcEEEecCC-C--ceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 4 PSKRREMDLMKLMM----SDYKVEMIND-G--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 4 ~~~Rl~~el~~~~~----~~~~~~~~~~-n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
+..||++|+.+-+. ..++....++ | +..|..+|.||+.|+||+.+|.++|...++||..||.|+|.+++--..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 56799999975542 2244444443 3 678999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCC--CCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033389 77 VDELSGSVCLDVI--NQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 77 V~~~~G~icl~~l--~~~W~p~~~i~~il~~~~~~~i~~~l~s~~~ 120 (120)
|+..+|.+.-..+ ..+|+-.|+++.+|. .++..|.+..|
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~-----~lr~~m~~~eN 126 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLG-----QLRKEMMSKEN 126 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHH-----hhhHHHHHHHh
Confidence 9977888866443 378999999999999 99988777654
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-16 Score=134.81 Aligned_cols=97 Identities=24% Similarity=0.475 Sum_probs=88.3
Q ss_pred CCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC--cccCcccCCCCeEEccCCC--
Q 033389 15 LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPNVDELSGSVCLDVIN-- 90 (120)
Q Consensus 15 ~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV~~~~G~icl~~l~-- 90 (120)
..+.|+.|...++-+.-..+.|.||+||||++|.|.|.+.||++||..||.|...+. .+.||.| .+|+||+++|.
T Consensus 866 ~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly-~~g~vc~s~l~tw 944 (1101)
T KOG0895|consen 866 SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNTW 944 (1101)
T ss_pred cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc-cccceehhhhccc
Confidence 356799999999977777899999999999999999999999999999999999985 5899999 59999999994
Q ss_pred -----CCCCCCCChhhccccCCHHHHHHHHhc
Q 033389 91 -----QTWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 91 -----~~W~p~~~i~~il~~~~~~~i~~~l~s 117 (120)
+-|+|+-++..||. +||.|+..
T Consensus 945 ~g~~~e~w~~~s~~lq~l~-----s~q~l~l~ 971 (1101)
T KOG0895|consen 945 HGRGNEVWNPSSSILQVLV-----SIQGLVLN 971 (1101)
T ss_pred cCCCccccCcchhHHHHHH-----Hhhhhhcc
Confidence 67999999999999 99998754
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5e-15 Score=125.85 Aligned_cols=109 Identities=23% Similarity=0.433 Sum_probs=99.7
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC---cccCcc
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNV 77 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HpnV 77 (120)
-.+|+++|++ +..++|+.+.+.+..+...++.|.||.|+||++|.|.|.|.||..||..||.|.+.+. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 3689999985 6677899999999999999999999999999999999999999999999999999986 689999
Q ss_pred cCCCCeEEccCC-------CCCCCCC-CChhhccccCCHHHHHHHHhcc
Q 033389 78 DELSGSVCLDVI-------NQTWSPM-FGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 78 ~~~~G~icl~~l-------~~~W~p~-~~i~~il~~~~~~~i~~~l~s~ 118 (120)
| .+|+||+++| .+.|+|. -++.++|. +||.++..+
T Consensus 363 Y-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~-----sIQ~Li~~e 405 (1101)
T KOG0895|consen 363 Y-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLE-----SIQGLILNE 405 (1101)
T ss_pred c-cCceEEeeeeeecccccccCCCccccchhhhhh-----hhhhhhccc
Confidence 9 5999999988 2789999 99999999 999998776
No 24
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.6e-15 Score=106.33 Aligned_cols=105 Identities=15% Similarity=0.275 Sum_probs=89.5
Q ss_pred HHHHH---HhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCC--CCCCeEEEecCcccCcccCCCC
Q 033389 8 REMDL---MKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP--YKSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 8 l~~el---~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~HpnV~~~~G 82 (120)
|+.|+ .+.+.+|+.+.|+-.|-+.|.++|++ ..+.|.||+|+|.|.+|++|| .+-|+|.|.+.+|||+|.+.++
T Consensus 24 llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~sk 102 (258)
T KOG0429|consen 24 LLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSK 102 (258)
T ss_pred HHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCcc
Confidence 44454 35678999999999999999999995 677999999999999999999 4479999999999999999999
Q ss_pred eEEccCCCCCC-CCCCChhhccccCCHHHHHHHHhcc
Q 033389 83 SVCLDVINQTW-SPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~~W-~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|++-....| +-...|-.||. -+|..+.+.
T Consensus 103 eLdl~raf~eWRk~ehhiwqvL~-----ylqriF~dp 134 (258)
T KOG0429|consen 103 ELDLNRAFPEWRKEEHHIWQVLV-----YLQRIFYDP 134 (258)
T ss_pred ceeHhhhhhhhhccccHHHHHHH-----HHHHHhcCc
Confidence 99998765559 55678888888 888877653
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.4e-09 Score=69.54 Aligned_cols=62 Identities=18% Similarity=0.417 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHH
Q 033389 49 WKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQML 115 (120)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l 115 (120)
.-+.+.|+++||+.||.++...|+---.--..+|+||+.+|. ++|+.+|+++.+++ +|-.++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~-----qiaatl 75 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIM-----QIAATL 75 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHH-----HHHHHh
Confidence 556888999999999999988754332222258999999995 78999999999999 665544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.67 E-value=4.1e-08 Score=67.06 Aligned_cols=69 Identities=25% Similarity=0.570 Sum_probs=60.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecCc---ccCcccCCCCeEEc---cCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 45 QGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDELSGSVCL---DVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~~G~icl---~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.|+.+.+.|.||++||..||.|....+- +=|||+ .+|.+|+ ....+.|.|.-.+..+|. +.+.+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~-----~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLE-----RAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHH-----HHHHHHHHh
Confidence 6899999999999999999999998654 689999 5999999 777889999999999998 888888754
Q ss_pred C
Q 033389 119 Y 119 (120)
Q Consensus 119 ~ 119 (120)
.
T Consensus 108 ~ 108 (133)
T PF14461_consen 108 L 108 (133)
T ss_pred h
Confidence 3
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.17 E-value=3.1e-06 Score=57.08 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=50.7
Q ss_pred ceeEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEEecCc-----ccCcccCCCCeEEccCCCCCCCC-CCChh
Q 033389 29 MQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNKI-----YHPNVDELSGSVCLDVINQTWSP-MFGKP 100 (120)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~~G~icl~~l~~~W~p-~~~i~ 100 (120)
+....++|. -.|+|..|. +.|-+|.+||..||.+...... -+.+|| .+|+|.+..| ++|++ ..++.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCHH
Confidence 444455543 358888875 6677999999999999886532 244999 6999998887 45877 77877
Q ss_pred hccccCCHHHHHHHHhcc
Q 033389 101 SILFPSTHVTICQMLQSS 118 (120)
Q Consensus 101 ~il~~~~~~~i~~~l~s~ 118 (120)
.++. .+++.+.++
T Consensus 106 ~lv~-----~l~~~F~~~ 118 (121)
T PF05743_consen 106 DLVQ-----ELQAVFSEE 118 (121)
T ss_dssp HHHH-----HHHHCCCHS
T ss_pred HHHH-----HHHHHHhHc
Confidence 7776 666655543
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.011 Score=46.23 Aligned_cols=66 Identities=30% Similarity=0.492 Sum_probs=48.4
Q ss_pred eCCCCCCCCCCEEEEEE--EcCCCCCCCCCeEEEecC-----cccCcccCCCCeEEccCCCCCCC-CCCChhhccc
Q 033389 37 NGPKESSYQGGVWKIRV--ELPDAYPYKSPSIGFVNK-----IYHPNVDELSGSVCLDVINQTWS-PMFGKPSILF 104 (120)
Q Consensus 37 ~gp~~t~y~gg~f~~~i--~fp~~YP~~pP~v~f~t~-----i~HpnV~~~~G~icl~~l~~~W~-p~~~i~~il~ 104 (120)
.|---.+|.|.+|.+-| -+.+.||+.||.+..... -.|-+|| .+|+|.+..|.+ |. |++.+..++.
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh~-W~~pssdLv~Liq 129 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLHN-WDPPSSDLVGLIQ 129 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhcc-CCCccchHHHHHH
Confidence 33344578888887554 478999999999966532 1489999 799999999965 85 5566665555
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.59 E-value=0.0005 Score=47.47 Aligned_cols=54 Identities=24% Similarity=0.531 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCCCCCCeEEEecCc-ccCcccCCCCeEEccCCC-CCC---CCCCChhhcc
Q 033389 49 WKIRVELPDAYPYKSPSIGFVNKI-YHPNVDELSGSVCLDVIN-QTW---SPMFGKPSIL 103 (120)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~~G~icl~~l~-~~W---~p~~~i~~il 103 (120)
|.+++.+|..||..||.|..-.-- --.-.| .+|+||++... .-| .|.++|...+
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 667777899999999999764311 112234 48999998863 235 6777776654
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.86 E-value=0.11 Score=35.09 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=43.3
Q ss_pred CCCCcEEEecCCCceeEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCc
Q 033389 16 MMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (120)
Q Consensus 16 ~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 72 (120)
...|+..+...+.-..|.+ |.| -+.+.|....-.+.|.+|+.||..+|...+..|-
T Consensus 10 ~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~ 67 (122)
T PF14462_consen 10 DGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP 67 (122)
T ss_pred HhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc
Confidence 3457777777776677766 443 4567799999999999999999999988777643
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.82 E-value=0.026 Score=36.28 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCCceeEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCc
Q 033389 26 NDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (120)
Q Consensus 26 ~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 72 (120)
..+...+.+.+.+ ...+.-....+++.+.||++||..+|.|...++.
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred cCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3445566666631 2334445668999999999999999999887643
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.13 E-value=0.16 Score=32.25 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=23.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 45 QGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999998764
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.34 E-value=0.042 Score=38.83 Aligned_cols=61 Identities=21% Similarity=0.474 Sum_probs=47.0
Q ss_pred EEEEEcCCCCCCCCCeEEEecCcc---cCcccCCC-----CeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHh
Q 033389 50 KIRVELPDAYPYKSPSIGFVNKIY---HPNVDELS-----GSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 50 ~~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~~-----G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l~ 116 (120)
.+.|.|+.+||..+|.|.+..+.| +|++.. . ..+|+.--. ..|.+..+++.+|. .|..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~-----rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLD-----RLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHH-----HHHHHHH
Confidence 467899999999999888876543 477762 4 678986543 56999999999998 8876654
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=0.084 Score=36.13 Aligned_cols=94 Identities=17% Similarity=0.373 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEEEecCc-c
Q 033389 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGV----------WKIRVELPDAYPYKSPSIGFVNKI-Y 73 (120)
Q Consensus 5 ~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~v~f~t~i-~ 73 (120)
.+||.+|++.+..- ++-..++-..|.-.=..+.||-|-|.+ |-+++.+|-.||..+|.+..-.-- -
T Consensus 29 vqrlkeey~sli~y---vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY---VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHHH---HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 47888888643210 111112222333222446777776643 556677889999999988653200 0
Q ss_pred cCcccCCCCeEEccCC-CCCC---CCCCChhhc
Q 033389 74 HPNVDELSGSVCLDVI-NQTW---SPMFGKPSI 102 (120)
Q Consensus 74 HpnV~~~~G~icl~~l-~~~W---~p~~~i~~i 102 (120)
---.+ .+|+||+.-. +.-| .|.++|...
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHH
Confidence 11233 4899999643 4456 455555544
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.27 E-value=2.3 Score=37.08 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCcEEEecCCCceeEEEEEeCCCCCCCCC-CEEEEEEEcCCCCCCC-CCeEEEecC
Q 033389 18 SDYKVEMINDGMQEFYVEFNGPKESSYQG-GVWKIRVELPDAYPYK-SPSIGFVNK 71 (120)
Q Consensus 18 ~~~~~~~~~~n~~~w~~~i~gp~~t~y~g-g~f~~~i~fp~~YP~~-pP~v~f~t~ 71 (120)
+.+.++-.+-.-..-.+++.||--.- .| ...++.|.||.+||.+ +|++.|..+
T Consensus 437 ~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 437 RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34444433333345566777653322 23 3357888999999977 689999854
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=84.41 E-value=1.3 Score=34.10 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCeEE
Q 033389 6 KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85 (120)
Q Consensus 6 ~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~ic 85 (120)
+++.+|+.+..-+-..-.-.++++....+++.. + ...-.++|.++.+||..+|.+...-+ ....
T Consensus 102 s~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P-~~~~--------- 165 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLP-IPFS--------- 165 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TT-S-HH---------
T ss_pred HHHHHHHHHhccccceEEecCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCC-cchh---------
Confidence 456666665433333222245677777777762 2 15677899999999999996422211 1112
Q ss_pred ccCCCCCCCC-CCChhhccccCCHHHHHHHHh
Q 033389 86 LDVINQTWSP-MFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 86 l~~l~~~W~p-~~~i~~il~~~~~~~i~~~l~ 116 (120)
..|.+ ..++.+++. ..+..|.
T Consensus 166 -----~~w~~~~ssL~~v~~-----qF~~~le 187 (291)
T PF09765_consen 166 -----LSWSPSQSSLKDVVQ-----QFQEALE 187 (291)
T ss_dssp -----HHHHCHT-SHHHHHH-----HHHHHHH
T ss_pred -----hhhcccccCHHHHHH-----HHHHHHH
Confidence 24888 788888887 6666654
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.07 E-value=7.2 Score=28.83 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=26.8
Q ss_pred CceeEEEEEeCCCCCC---CCCCEEEEEEEcCCCCCCCCCeEEE
Q 033389 28 GMQEFYVEFNGPKESS---YQGGVWKIRVELPDAYPYKSPSIGF 68 (120)
Q Consensus 28 n~~~w~~~i~gp~~t~---y~gg~f~~~i~fp~~YP~~pP~v~f 68 (120)
+...+.++|. ...+- +.| .+.+.+.++.+||..+|-+.+
T Consensus 29 ~~~~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 29 DPPIFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred CCccceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 3333666776 33222 223 788999999999999999943
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=74.01 E-value=5.4 Score=31.42 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=23.4
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecCccc
Q 033389 46 GGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (120)
+-.|-+.|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3448888999999999999999987 444
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=63.89 E-value=28 Score=21.73 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=29.0
Q ss_pred eeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCccc
Q 033389 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 30 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (120)
.+|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 58999999887765555666788888888876 66666666444
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=62.88 E-value=13 Score=29.30 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=29.3
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeEEEec-CcccCc
Q 033389 43 SYQGGVWKIRVELPDAYPYKSPSIGFVN-KIYHPN 76 (120)
Q Consensus 43 ~y~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpn 76 (120)
||.|...+-+|.|...||..||.+.|.. .-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 5888899999999999999999999963 347874
No 41
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=56.85 E-value=65 Score=22.83 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=46.0
Q ss_pred EEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCeEEccCCCCCC--CCCCChhhccccCCHHH
Q 033389 33 YVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTW--SPMFGKPSILFPSTHVT 110 (120)
Q Consensus 33 ~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~icl~~l~~~W--~p~~~i~~il~~~~~~~ 110 (120)
.+.+..|+-.|- --...++|.| .||-..||+|.|+.+.-.--|- --.+-+++|...- ...-.+-+++.|-.+.+
T Consensus 40 ~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp~T~~~~~--~k~l~~~mlr~~~L~~app~~~~~l~qq~~~s 115 (177)
T PF14455_consen 40 DVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDPFTGTPLA--RKDLGLKMLRRPHLPGAPPEMISVLMQQQALS 115 (177)
T ss_pred EEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEeccccCCccc--ccccchhhhhcCCCCCCCchhhhhcccccchh
Confidence 344443444442 2335677788 8999999999999764333332 1234455554332 11233445566556667
Q ss_pred HHHHHhc
Q 033389 111 ICQMLQS 117 (120)
Q Consensus 111 i~~~l~s 117 (120)
++.+|+.
T Consensus 116 ~~~~~~a 122 (177)
T PF14455_consen 116 LQDFLSA 122 (177)
T ss_pred hhhhccC
Confidence 7776654
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=56.29 E-value=21 Score=24.41 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.0
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeEEEec
Q 033389 45 QGGVWKIRVELPDAYP-YKSPSIGFVN 70 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 70 (120)
+.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3588999999999999 9999999973
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=51.44 E-value=27 Score=25.18 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEec
Q 033389 45 QGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
+.|.|.|.=.||--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999999974
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.65 E-value=37 Score=23.76 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEec
Q 033389 46 GGVWKIRVELPDAYP-----YKSPSIGFVN 70 (120)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~t 70 (120)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999873
No 45
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=46.10 E-value=43 Score=24.72 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCC----------------------C
Q 033389 3 SPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAY----------------------P 60 (120)
Q Consensus 3 ~~~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y----------------------P 60 (120)
+++.|+.+.+.+.+.. ..+...-|.+.+....+..| || |.+-+.|.++= .
T Consensus 9 s~~eR~~e~~~~~k~~------L~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~~ 80 (235)
T PF14135_consen 9 SPAERINEALAEYKKI------LTSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLKQ 80 (235)
T ss_pred CHHHHHHHHHHHHHHH------HhcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEec
Confidence 4678887765433211 11223448888883233334 44 77777776443 2
Q ss_pred CCCCeEEEec--CcccCcccC
Q 033389 61 YKSPSIGFVN--KIYHPNVDE 79 (120)
Q Consensus 61 ~~pP~v~f~t--~i~HpnV~~ 79 (120)
..-|.+.|.| ++.|-..++
T Consensus 81 ~~gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 81 DQGPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred CCceEEEEEeCCceEEEccCC
Confidence 2348889987 377877764
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=41.77 E-value=36 Score=26.73 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 46 GGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.-.+.+.+..++.||...|.|+...|
T Consensus 44 yvcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 44 YVCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred eEEEEEEEecCCCCCCcCCceEecCC
Confidence 35688899999999999999998865
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=41.77 E-value=56 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.367 Sum_probs=29.9
Q ss_pred CceeEEEEEeCCCCCCCCC----CEEEEEEEcC-----CCCCCCCCeEEEecCccc
Q 033389 28 GMQEFYVEFNGPKESSYQG----GVWKIRVELP-----DAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 28 n~~~w~~~i~gp~~t~y~g----g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 74 (120)
|..-|.+.+. ..+|--.. ..|+.++.+. -|-||.+|+|+.+++-|-
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 3444766666 33443333 3466666665 588999999999998653
No 48
>smart00340 HALZ homeobox associated leucin zipper.
Probab=40.36 E-value=20 Score=19.71 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhCC
Q 033389 4 PSKRREMDLMKLM 16 (120)
Q Consensus 4 ~~~Rl~~el~~~~ 16 (120)
..+||++|++++.
T Consensus 20 eNrRL~ke~~eLr 32 (44)
T smart00340 20 ENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHH
Confidence 4689999987653
No 49
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.43 E-value=29 Score=25.61 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCcEEEecCCC---------ceeEEEEEeCCCCCCCCC--CEEEEEEEcCCCCCCCCCeE
Q 033389 7 RREMDLMKLMMSDYKVEMINDG---------MQEFYVEFNGPKESSYQG--GVWKIRVELPDAYPYKSPSI 66 (120)
Q Consensus 7 Rl~~el~~~~~~~~~~~~~~~n---------~~~w~~~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~v 66 (120)
+|...+.+....+..+.|..++ +.+..|+|.|-+ ||.+ -.--+.+..+++.+. ||+.
T Consensus 19 ~l~~~l~~~~~~~~~i~P~~~~iF~af~~~p~~~vKVVIlGQD--PYh~~gqA~GLaFSv~~~~~~-PpSL 86 (212)
T TIGR00628 19 ELLAFVKRERATQETVYPPKEDVFAWTRFCPPEDVKVVILGQD--PYHGPGQAHGLAFSVKPGVPI-PPSL 86 (212)
T ss_pred HHHHHHHHHHHcCCeEcCCHHHHHHHHhcCChhheEEEEecCC--CCCCCCCcceeeeECCCCCCC-CchH
Confidence 3434343333344455555544 445799999854 7755 222233334555543 5554
No 50
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=34.79 E-value=21 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=17.3
Q ss_pred CCCeEEccCCCCCCCCCCChhh
Q 033389 80 LSGSVCLDVINQTWSPMFGKPS 101 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~ 101 (120)
..|.+|.-.+...|+|.++++-
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~V 70 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVKV 70 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEEE
Confidence 3456788888899999998764
No 51
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=32.62 E-value=82 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCC-CCCCCEEEEEEE---cCCCCCCCCCeEEEec
Q 033389 31 EFYVEFNGPKES-SYQGGVWKIRVE---LPDAYPYKSPSIGFVN 70 (120)
Q Consensus 31 ~w~~~i~gp~~t-~y~gg~f~~~i~---fp~~YP~~pP~v~f~t 70 (120)
+|+..+.|-.++ -|++|.+++.+. | ++-=...|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeE
Confidence 588889987666 788999988776 3 22234467999975
No 52
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.16 E-value=77 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q 033389 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (120)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88888876
No 53
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=32.10 E-value=56 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=13.4
Q ss_pred cCccc---CcccCCCCeEEccCC
Q 033389 70 NKIYH---PNVDELSGSVCLDVI 89 (120)
Q Consensus 70 t~i~H---pnV~~~~G~icl~~l 89 (120)
|++|| +||+ .+|+||+...
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~ 152 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNA 152 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCC
Confidence 34554 4898 5999999654
No 54
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=32.01 E-value=39 Score=26.57 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCEEEEEEEcC-----CCCCCCCCeEEEecCcccCcccC
Q 033389 45 QGGVWKIRVELP-----DAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 45 ~gg~f~~~i~fp-----~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+|...-++..|= ++=+...|+|.|.--+|||||-+
T Consensus 286 ~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~ 325 (334)
T KOG3696|consen 286 EGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQP 325 (334)
T ss_pred ccceeEeechhhcccccCCCcccCceEEEEEeccCccccc
Confidence 344444555553 34456679999999999999973
No 55
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=31.18 E-value=26 Score=24.71 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=10.7
Q ss_pred CcccCcccCCCCeEEc
Q 033389 71 KIYHPNVDELSGSVCL 86 (120)
Q Consensus 71 ~i~HpnV~~~~G~icl 86 (120)
|+|||+.| .|.+|.
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 69999999 566554
No 56
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=30.22 E-value=50 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=20.0
Q ss_pred CCCceeEEEEEeCCCCCCCC-CCEEEEEEEc
Q 033389 26 NDGMQEFYVEFNGPKESSYQ-GGVWKIRVEL 55 (120)
Q Consensus 26 ~~n~~~w~~~i~gp~~t~y~-gg~f~~~i~f 55 (120)
..|...|.|++.|++|++.. ..+|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 45677788999999988774 3444444443
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.94 E-value=90 Score=22.42 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q 033389 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (120)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 78888776
No 58
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=27.68 E-value=69 Score=22.59 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=13.7
Q ss_pred cCccc---CcccCCCCeEEccCC
Q 033389 70 NKIYH---PNVDELSGSVCLDVI 89 (120)
Q Consensus 70 t~i~H---pnV~~~~G~icl~~l 89 (120)
|++|| +||+ .+|+||+...
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCC
Confidence 44554 4898 5999999763
No 59
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=26.85 E-value=21 Score=31.41 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=0.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.+=-++|.+|.|||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3445789999999999999877654
No 60
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=26.56 E-value=71 Score=27.21 Aligned_cols=29 Identities=28% Similarity=0.739 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEEEcCCCCCCC---CCeEEEecC
Q 033389 42 SSYQGGVWKIRVELPDAYPYK---SPSIGFVNK 71 (120)
Q Consensus 42 t~y~gg~f~~~i~fp~~YP~~---pP~v~f~t~ 71 (120)
+||.=|.|-+ +.+|++||+. -|.++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4666678874 6689999987 599999996
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.15 E-value=1.8e+02 Score=18.42 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 44 YQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 44 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
-+|..+.|.-.-|..|| .|.|.+...
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35777888888889999 589988864
No 62
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=24.52 E-value=1e+02 Score=17.84 Aligned_cols=21 Identities=5% Similarity=0.240 Sum_probs=12.2
Q ss_pred EEEEEEcCCCCCCCCCeEEEec
Q 033389 49 WKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t 70 (120)
+...|.|+..|.. +|+|.+.-
T Consensus 3 ~~~~I~F~~~F~~-~P~V~~~i 23 (72)
T PF09458_consen 3 YSQTITFSKPFSS-PPQVIVSI 23 (72)
T ss_dssp EEEEEE-SS--SS---EEEEEE
T ss_pred eEEEeEcChhcCC-CCEEEEEE
Confidence 5678999998987 88887653
No 63
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=24 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCeEEccCCCCCCCCCCChhhccc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILF 104 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~ 104 (120)
.+.+|.++++.-|+|..|.+.-+-
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHH
Confidence 567999999999999999987664
No 64
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.44 E-value=1.6e+02 Score=22.50 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CeEEEec
Q 033389 41 ESSYQGGVWKIRVELPDAYPYKS--PSIGFVN 70 (120)
Q Consensus 41 ~t~y~gg~f~~~i~fp~~YP~~p--P~v~f~t 70 (120)
.+.+.|..|++.|..|.+||-.. |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 56788999999999999999887 9998885
No 65
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=21.43 E-value=69 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCeEEE
Q 033389 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGF 68 (120)
Q Consensus 39 p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f 68 (120)
-+-|||.+|.||+.=.+.+---..+|.|-.
T Consensus 180 qDITPygNgvyHiNSIlQP~~aT~aPVVGv 209 (276)
T PF06675_consen 180 QDITPYGNGVYHINSILQPAVATDAPVVGV 209 (276)
T ss_pred cccccCCCCceeeeccccchhhcCCCeeEE
Confidence 478999999999999988877777887754
No 66
>PRK05254 uracil-DNA glycosylase; Provisional
Probab=21.42 E-value=68 Score=23.84 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCc---------eeEEEEEeCCCCCCCCC
Q 033389 17 MSDYKVEMINDGM---------QEFYVEFNGPKESSYQG 46 (120)
Q Consensus 17 ~~~~~~~~~~~n~---------~~w~~~i~gp~~t~y~g 46 (120)
..+..+.|..+++ .+.+|+|.|-+ ||.+
T Consensus 35 ~~~~~i~P~~~~iF~a~~~~p~~~vKVVIlGQD--PY~~ 71 (224)
T PRK05254 35 AAGKTIYPPGEDIFRAFNLTPFDDVKVVILGQD--PYHG 71 (224)
T ss_pred HcCCeECCCHHHHHHHHhcCCHhHeEEEEEecC--CCCC
Confidence 3455566665544 45689999854 7755
No 67
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.82 E-value=1e+02 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=16.2
Q ss_pred eEEEEEeCCCCCCCCCCEEEE
Q 033389 31 EFYVEFNGPKESSYQGGVWKI 51 (120)
Q Consensus 31 ~w~~~i~gp~~t~y~gg~f~~ 51 (120)
+|.+.+-| +..|+|..|+|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999986 56899999986
No 68
>PF01107 MP: Viral movement protein (MP); InterPro: IPR001022 The movement protein of tobamoviruses is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and involves the interaction of the movement protein with the plasmodesmata. The movement protein possesses the ability to bind to RNA to achieve its role []. The N terminus contains two particularly well-conserved regions, substitutions in one of these results in temperature-sensitive cell-to-cell movement. The C terminus contains three sub-regions characterised by the distributions of charged amino acid residues [].; GO: 0003676 nucleic acid binding, 0006810 transport
Probab=20.63 E-value=2.7e+02 Score=19.71 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCcEEEecC-CCceeEEEEEeCCCCCCCCCCEEEEEEEcC
Q 033389 18 SDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELP 56 (120)
Q Consensus 18 ~~~~~~~~~-~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp 56 (120)
+++.+...+ +.-..|.+.+. -.|..++.|..-+.|.+.
T Consensus 130 Pn~~vsl~D~~~~~~l~l~~~-~~g~~~~~G~~p~SI~~~ 168 (189)
T PF01107_consen 130 PNYSVSLDDPNLNDSLQLSVK-FEGVDMEDGSHPFSIEYG 168 (189)
T ss_pred CCcEEEecchhcCCcEEEEEE-ccccccCCCcEeEEEEEE
Confidence 455566666 33455777666 566678888888887763
No 69
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.49 E-value=1.6e+02 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033389 46 GGVWKIRVELPDAYP------------------YKSPSIGFVN 70 (120)
Q Consensus 46 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 70 (120)
.|.|.|.=.+|.-|| ..||.|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 488999999999997 5688898863
Done!