Query 033389
Match_columns 120
No_of_seqs 127 out of 1015
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 22:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 9.1E-43 3.1E-47 235.4 11.8 113 1-119 4-120 (125)
2 2h2y_A Ubiquitin-conjugating e 100.0 8.3E-42 2.8E-46 233.7 13.7 114 1-120 18-135 (136)
3 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.9E-41 1.3E-45 237.8 13.1 112 1-118 1-116 (169)
4 2a7l_A Hypothetical ubiquitin- 100.0 1.4E-41 4.9E-46 232.5 10.5 110 1-116 20-136 (136)
5 2aak_A UBC1, ubiquitin conjuga 100.0 1E-40 3.5E-45 231.9 13.1 112 1-118 1-116 (152)
6 2bep_A Ubiquitin-conjugating e 100.0 1.1E-40 3.6E-45 233.3 11.8 113 1-118 5-124 (159)
7 2ucz_A UBC7, ubiquitin conjuga 100.0 2.1E-40 7.1E-45 233.0 12.8 112 1-118 1-130 (165)
8 2ayv_A Ubiquitin-conjugating e 100.0 3.4E-40 1.2E-44 232.3 13.4 109 4-118 22-133 (166)
9 2c2v_B Ubiquitin-conjugating e 100.0 1.1E-40 3.6E-45 232.3 10.5 112 1-118 2-117 (154)
10 2r0j_A Ubiquitin carrier prote 100.0 2.1E-40 7.3E-45 229.6 11.9 108 5-118 3-113 (149)
11 2e2c_A Ubiquitin conjugating e 100.0 3.9E-40 1.3E-44 229.9 13.0 109 4-118 10-121 (156)
12 4gpr_A Ubiquitin-conjugating e 100.0 4E-40 1.4E-44 228.7 13.0 109 4-118 5-116 (151)
13 1jat_A Ubiquitin-conjugating e 100.0 2.8E-40 9.5E-45 230.4 11.7 111 2-118 4-117 (155)
14 3k9o_A Ubiquitin-conjugating e 100.0 2.5E-40 8.5E-45 239.1 11.8 113 1-118 2-121 (201)
15 1zdn_A Ubiquitin-conjugating e 100.0 2.5E-40 8.6E-45 231.3 11.4 109 4-118 14-125 (158)
16 1z2u_A Ubiquitin-conjugating e 100.0 5.3E-40 1.8E-44 227.8 12.7 109 4-118 5-116 (150)
17 2c4o_A Ubiquitin-conjugating e 100.0 5.8E-40 2E-44 231.0 12.8 109 4-118 20-131 (165)
18 3h8k_A Ubiquitin-conjugating e 100.0 7.2E-40 2.5E-44 230.0 12.8 110 3-118 3-129 (164)
19 1fxt_A Ubiquitin-conjugating e 100.0 2.4E-40 8.2E-45 229.3 10.0 110 4-118 2-115 (149)
20 1i7k_A Ubiquitin-conjugating e 100.0 6E-40 2.1E-44 233.5 12.2 109 4-118 31-142 (179)
21 1yrv_A Ubiquitin-conjugating l 100.0 3.2E-40 1.1E-44 233.1 10.0 113 1-118 20-138 (169)
22 3rz3_A Ubiquitin-conjugating e 100.0 1.9E-39 6.6E-44 231.6 13.1 109 4-118 8-133 (183)
23 3bzh_A Ubiquitin-conjugating e 100.0 9.4E-40 3.2E-44 235.1 11.4 110 3-118 48-160 (194)
24 2onu_A Ubiquitin-conjugating e 100.0 3.7E-41 1.3E-45 234.3 3.8 112 2-118 1-113 (152)
25 1yh2_A HSPC150 protein similar 100.0 2.3E-39 7.9E-44 228.6 13.1 110 3-118 4-120 (169)
26 2gjd_A Ubiquitin-conjugating e 100.0 1.8E-39 6.1E-44 226.8 12.1 113 1-119 1-124 (157)
27 1y8x_A Ubiquitin-conjugating e 100.0 2E-39 6.8E-44 227.2 11.8 112 1-119 4-117 (160)
28 2pwq_A Ubiquitin conjugating e 100.0 7.8E-40 2.7E-44 238.8 9.9 110 4-118 24-136 (216)
29 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.5E-39 1.2E-43 231.9 12.6 110 4-118 33-158 (193)
30 3rcz_B SUMO-conjugating enzyme 100.0 4.7E-39 1.6E-43 226.0 12.7 110 4-119 11-130 (163)
31 2awf_A Ubiquitin-conjugating e 100.0 5.4E-39 1.9E-43 227.3 13.0 109 4-118 18-143 (172)
32 3e46_A Ubiquitin-conjugating e 100.0 4.1E-39 1.4E-43 239.6 11.8 113 1-118 54-173 (253)
33 2grr_A Ubiquitin-conjugating e 100.0 7E-39 2.4E-43 224.6 12.0 113 1-119 4-127 (161)
34 2a4d_A Ubiquitin-conjugating e 100.0 8E-39 2.7E-43 224.1 12.2 112 4-120 26-146 (160)
35 2z5d_A Ubiquitin-conjugating e 100.0 6.7E-40 2.3E-44 233.2 6.2 109 4-118 26-135 (179)
36 2nvu_C NEDD8-conjugating enzym 100.0 1.1E-38 3.8E-43 227.2 11.2 110 3-119 26-137 (180)
37 2y9m_A Ubiquitin-conjugating e 100.0 7.8E-39 2.7E-43 226.5 10.1 113 1-118 3-133 (172)
38 1jat_B Ubiquitin-conjugating e 100.0 1.2E-38 4.2E-43 218.4 10.3 112 1-118 2-124 (138)
39 1tte_A Ubiquitin-conjugating e 100.0 2.5E-39 8.4E-44 236.0 6.7 112 2-118 1-116 (215)
40 1wzv_A Ubiquitin-conjugating e 100.0 2.4E-38 8.2E-43 220.5 10.8 108 4-118 5-117 (155)
41 2hlw_A Ubiquitin-conjugating e 100.0 2E-38 6.8E-43 224.1 10.3 113 3-120 35-156 (170)
42 1yf9_A Ubiquitin carrier prote 100.0 7.6E-39 2.6E-43 226.4 6.6 109 4-118 13-122 (171)
43 2q0v_A Ubiquitin-conjugating e 100.0 1E-37 3.5E-42 217.8 11.1 110 3-119 21-140 (156)
44 3fn1_B NEDD8-conjugating enzym 100.0 1E-37 3.4E-42 219.7 10.9 109 2-117 13-131 (167)
45 3o2u_A NEDD8-conjugating enzym 100.0 3.1E-37 1E-41 221.4 11.5 110 2-118 28-145 (190)
46 1c4z_D UBCH7, ubiquitin conjug 100.0 2.8E-37 9.7E-42 214.9 10.2 108 4-118 3-115 (154)
47 4ds2_A Ubiquitin-conjugating e 100.0 1.3E-37 4.6E-42 219.2 8.3 103 1-104 5-125 (167)
48 4ddg_A Ubiquitin-conjugating e 100.0 2E-36 6.9E-41 237.5 11.8 110 3-118 3-115 (399)
49 1zuo_A Hypothetical protein LO 100.0 4.5E-37 1.5E-41 219.8 6.8 109 4-118 28-156 (186)
50 2f4w_A Ubiquitin-conjugating e 100.0 8.8E-36 3E-40 213.3 12.3 107 4-118 15-127 (187)
51 3ceg_A Baculoviral IAP repeat- 100.0 1.9E-34 6.6E-39 220.3 11.7 107 4-116 77-203 (323)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.2E-29 7.5E-34 175.7 -2.5 96 5-104 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 5.6E-19 1.9E-23 123.4 6.3 91 21-118 52-157 (162)
54 3kpa_A Probable ubiquitin fold 99.7 3E-19 1E-23 122.4 -2.9 85 5-96 36-131 (168)
55 3obq_A Tumor susceptibility ge 99.6 1.8E-15 6.1E-20 104.0 6.1 80 27-118 51-139 (146)
56 2ebm_A RWD domain-containing p 96.6 0.0099 3.4E-07 38.7 7.1 68 1-70 8-78 (128)
57 2yz0_A Serine/threonine-protei 95.2 0.077 2.6E-06 34.9 6.9 41 29-70 45-85 (138)
58 2day_A Ring finger protein 25; 94.8 0.12 4.2E-06 33.4 6.8 42 29-70 39-82 (128)
59 3zqs_A E3 ubiquitin-protein li 94.3 0.31 1.1E-05 34.2 8.2 83 7-116 5-87 (186)
60 2ebk_A RWD domain-containing p 93.9 0.1 3.5E-06 33.8 5.0 41 29-70 39-79 (128)
61 2daw_A RWD domain containing p 92.8 0.22 7.6E-06 33.5 5.4 24 48-71 76-99 (154)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 92.2 0.082 2.8E-06 34.6 2.4 24 47-70 63-86 (137)
63 2dax_A Protein C21ORF6; RWD do 91.0 0.17 5.7E-06 33.9 3.0 24 48-71 74-97 (152)
64 3rls_A YAF9, protein AF-9 homo 53.3 46 0.0016 22.9 6.2 45 27-73 30-74 (175)
65 3qrl_A Transcription initiatio 43.4 69 0.0024 21.2 6.1 43 29-73 32-77 (140)
66 2bum_A Protocatechuate 3,4-dio 31.9 49 0.0017 23.2 3.7 25 45-69 109-138 (209)
67 3u3c_B Paxillin LD2 peptide; 4 24.8 47 0.0016 15.1 1.7 16 4-19 6-24 (26)
68 2lta_A De novo designed protei 27.8 19 0.00064 21.9 0.0 33 5-37 39-73 (110)
69 2ccv_A Helix pomatia agglutini 21.1 1.1E+02 0.0037 18.7 3.4 23 47-70 29-51 (101)
70 1vpk_A DNA polymerase III, bet 20.7 1.5E+02 0.005 22.1 4.7 47 7-64 85-132 (378)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=9.1e-43 Score=235.38 Aligned_cols=113 Identities=23% Similarity=0.505 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCc-ccCc
Q 033389 1 MSSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (120)
Q Consensus 1 Ms~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 76 (120)
|+++.+||++|++ +.++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 7888999999986 45678999999999999999999999999999999999999999999999999999997 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
|+ .+|+||+++|.++|+|++|+++||+ +|+++|.+.-
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i~~vl~-----si~~ll~~p~ 120 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSISGLVL-----SIISMLSSAK 120 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHC---
T ss_pred CC-CCCEEEchhcCCCCCCCCcHHHHHH-----HHHHHHhCcc
Confidence 99 5999999999999999999999999 9999998864
No 2
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=8.3e-42 Score=233.70 Aligned_cols=114 Identities=25% Similarity=0.514 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCc-ccCc
Q 033389 1 MSSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (120)
Q Consensus 1 Ms~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 76 (120)
|+++.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 5668899999986 45778999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~~ 120 (120)
|+ .+|+||+++|.++|+|++++++||+ +|+++|.+..|
T Consensus 98 v~-~~G~ICl~iL~~~WsP~~ti~~vL~-----si~sll~~p~~ 135 (136)
T 2h2y_A 98 VY-SNGDICLSVLGDDYNPSLSISGLIL-----SIISMLSSAKE 135 (136)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCHHHHHH-----HHHHHHSSSCC
T ss_pred CC-CCCEEECccccCCCCCCCcHHHHHH-----HHHHHHhCcCc
Confidence 99 5999999999999999999999999 99999998754
No 3
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-41 Score=237.76 Aligned_cols=112 Identities=26% Similarity=0.614 Sum_probs=105.3
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||+ +.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 886 7899999986 457789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+ .+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 81 I~-~~G~ICl~iL~~~WsP~~~i~~vL~-----si~~ll~~P 116 (169)
T 1ayz_A 81 VY-ANGEICLDILQNRWTPTYDVASILT-----SIQSLFNDP 116 (169)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHTCC
T ss_pred CC-CCCeEeehhhccCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 99 5999999999999999999999999 999999875
No 4
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-41 Score=232.55 Aligned_cols=110 Identities=25% Similarity=0.578 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHH---hCCCCCcEEE--ecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc--
Q 033389 1 MSSPSKRREMDLM---KLMMSDYKVE--MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY-- 73 (120)
Q Consensus 1 Ms~~~~Rl~~el~---~~~~~~~~~~--~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 73 (120)
||++++||++|++ +.+++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 7776799999986 4577899865 78899999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHh
Q 033389 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~ 116 (120)
||||+ .+|+||+++|.++|+|+++|++||+ +|+++|+
T Consensus 100 HPNV~-~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~slL~ 136 (136)
T 2a7l_A 100 HPHVY-SNGHICLSILTEDWSPALSVQSVCL-----SIISMLS 136 (136)
T ss_dssp BTTBC-TTCBBCCGGGTTTCCTTSCHHHHHH-----HHHHHTC
T ss_pred CccCC-CCCeEEchhcCCCCCCCCcHHHHHH-----HHHHHhC
Confidence 99999 5999999999999999999999999 9999984
No 5
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1e-40 Score=231.89 Aligned_cols=112 Identities=28% Similarity=0.627 Sum_probs=106.0
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||+ +.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 886 7899999986 457789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+ .+|+||+++|.++|+|+++|++||. +|+++|.++
T Consensus 81 v~-~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 116 (152)
T 2aak_A 81 IY-ADGSICLDILQNQWSPIYDVAAILT-----SIQSLLCDP 116 (152)
T ss_dssp BC-TTSBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHTSC
T ss_pred CC-CCCEEechhhcCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 99 5999999999999999999999999 999999875
No 6
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.1e-40 Score=233.35 Aligned_cols=113 Identities=25% Similarity=0.755 Sum_probs=105.4
Q ss_pred CCC-HHHHHHHHHHhC------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~~------~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
||+ +.+||++|++++ +..|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 664 789999999754 3679999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||||+..+|+||+++|.++|+|++++++||+ +|+++|.++
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 124 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAA 124 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 9999955899999999999999999999999 999999875
No 7
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-40 Score=233.04 Aligned_cols=112 Identities=28% Similarity=0.565 Sum_probs=103.6
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecC-CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccC
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
||+ +.+||++|++ +.+++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 776 7899999986 5577899999876 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCC-------------CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 76 NVDELSGSVCLDVI-------------NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 76 nV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||+ .+|+||+++| .++|+|+++|++||+ +|+++|.+.
T Consensus 81 Nv~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~-----si~~ll~~P 130 (165)
T 2ucz_A 81 NIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL-----SVMSMLSEP 130 (165)
T ss_dssp TBC-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCC-CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 999 5999999999 688999999999999 999999875
No 8
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-40 Score=232.34 Aligned_cols=109 Identities=32% Similarity=0.727 Sum_probs=103.9
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 22 ~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~-~ 100 (166)
T 2ayv_A 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN-S 100 (166)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-C
Confidence 6899999986 45778999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~p 133 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLL-----SISSLLTDP 133 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEEcccccccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999875
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-40 Score=232.32 Aligned_cols=112 Identities=32% Similarity=0.648 Sum_probs=104.7
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||. +.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 344 5799999986 567789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+ .+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 117 (154)
T 2c2v_B 82 VD-KLGRICLDILKDKWSPALQIRTVLL-----SIQALLSAP 117 (154)
T ss_dssp BC-TTCBBCCHHHHTSCCTTCCHHHHHH-----HHHHHTTSC
T ss_pred Cc-cCCeEEchhccCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 99 5899999999999999999999999 999999864
No 10
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.1e-40 Score=229.63 Aligned_cols=108 Identities=31% Similarity=0.692 Sum_probs=102.4
Q ss_pred HHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 5 SKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 5 ~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID-KL 81 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-TT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCC-CC
Confidence 589999886 46778999999999999999999999999999999999999999999999999999999999999 58
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 82 GSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 113 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLL-----SIQALLSSP 113 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHH-----HHHHHHHSC
T ss_pred CEEechhcCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 99999999999999999999999 999999875
No 11
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-40 Score=229.87 Aligned_cols=109 Identities=29% Similarity=0.622 Sum_probs=103.6
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD-Q 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc-c
Confidence 7899999986 45678999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~-----si~~ll~~p 121 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILL-----SLQSLLGEP 121 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHTTSC
T ss_pred CceEECccccccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999875
No 12
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=4e-40 Score=228.72 Aligned_cols=109 Identities=29% Similarity=0.707 Sum_probs=103.9
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.|||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~-~ 83 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-K 83 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC-C
Confidence 6899999985 55778999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 116 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLL-----SISSLLTDP 116 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHH-----HHHHHhcCC
Confidence 999999999999999999999999 999999874
No 13
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.8e-40 Score=230.38 Aligned_cols=111 Identities=34% Similarity=0.696 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCccc
Q 033389 2 SSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 2 s~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 78 (120)
+++.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 346799999986 45788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 117 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLL-----SIQALLASP 117 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHH-----HHHHHHhCC
Confidence 7999999999999999999999999 999999875
No 14
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.5e-40 Score=239.14 Aligned_cols=113 Identities=25% Similarity=0.768 Sum_probs=104.5
Q ss_pred CCC-HHHHHHHHHHhCC------CCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 1 MSS-PSKRREMDLMKLM------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~~~------~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
||+ +.+||++|++++. +.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 775 7899999997542 469999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||||+..+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p 121 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAA 121 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHH-----HHHHHhcCC
Confidence 9999955999999999999999999999999 999999875
No 15
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-40 Score=231.28 Aligned_cols=109 Identities=25% Similarity=0.521 Sum_probs=103.3
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-A 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC-C
Confidence 5789999986 56788999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p 125 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLL-----TIKCLLIHP 125 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCEEehhhcCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 899999999999999999999999 999999764
No 16
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=5.3e-40 Score=227.84 Aligned_cols=109 Identities=33% Similarity=0.752 Sum_probs=103.6
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC-C
Confidence 6799999986 46778999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 116 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLL-----SICSLLCDP 116 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeeccccCCCCCCCCHHHHHH-----HHHHHhhCC
Confidence 999999999999999999999999 999999764
No 17
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5.8e-40 Score=230.96 Aligned_cols=109 Identities=33% Similarity=0.750 Sum_probs=103.5
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~-~ 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC-C
Confidence 6899999996 45678999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~-----si~~ll~~p 131 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLL-----SICSLLCDP 131 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999864
No 18
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=7.2e-40 Score=230.02 Aligned_cols=110 Identities=24% Similarity=0.514 Sum_probs=103.1
Q ss_pred CHHHHHHHHHH---hCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCccc
Q 033389 3 SPSKRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 3 ~~~~Rl~~el~---~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 78 (120)
++.|||++|++ +.++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~ 82 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC
Confidence 47899999985 56778999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 79 ELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 79 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|. ++|+|++||++||+ +|+++|.+.
T Consensus 83 -~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~-----~i~~ll~~p 129 (164)
T 3h8k_A 83 -PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL-----SVVSMLAEP 129 (164)
T ss_dssp -TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred -CCCcEeeecccCcccccccccccccCCCCCCcHHHHHH-----HHHHHHcCC
Confidence 69999999997 78999999999999 999999874
No 19
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.4e-40 Score=229.32 Aligned_cols=110 Identities=30% Similarity=0.702 Sum_probs=103.1
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+||++|++ +.+++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 4689999986 45678999999987 9999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|.++|+|++++++||+ +|+++|.++
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 115 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALI-----SLQALLQSP 115 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 4999999999999999999999999 999999875
No 20
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6e-40 Score=233.52 Aligned_cols=109 Identities=28% Similarity=0.575 Sum_probs=103.5
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~-~ 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-T 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc-c
Confidence 6799999986 45678999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~P 142 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILL-----SIQSLLGEP 142 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEEcccCcCcCCCCCCHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999875
No 21
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-40 Score=233.06 Aligned_cols=113 Identities=26% Similarity=0.530 Sum_probs=105.1
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
|++ +.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 665 6799999986 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 77 VDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+..+|+||+++|. ++|+|+++|++||+ +|+++|.+.
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~-----sI~sll~~P 138 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILL-----ALQVMLSNP 138 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHH-----HHHHHHTSC
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHH-----HHHHHHhCC
Confidence 94379999999998 89999999999999 999999875
No 22
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.9e-39 Score=231.59 Aligned_cols=109 Identities=27% Similarity=0.660 Sum_probs=101.6
Q ss_pred HHHHHHHHHH---hCCCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLM---KLMMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~-~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.|||++|++ +.++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 8 a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~- 86 (183)
T 3rz3_A 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY- 86 (183)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC-
Confidence 7899999985 5677899999 6678999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|. ++|+|+++|++||+ +|+++|.+.
T Consensus 87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~-----si~~ll~~P 133 (183)
T 3rz3_A 87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-----SVISLLNEP 133 (183)
T ss_dssp TTSBBCCTTC--------------CCCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 59999999996 88999999999999 999999874
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=9.4e-40 Score=235.07 Aligned_cols=110 Identities=29% Similarity=0.649 Sum_probs=104.1
Q ss_pred CHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
.+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~- 126 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN- 126 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC-
Confidence 36799999986 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|.||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~~ll~~p 160 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLL-----SICSLLTDC 160 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCceechhhhccCCCcCcHHHHHH-----HHHHHHhCC
Confidence 5999999999999999999999999 999999874
No 24
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-41 Score=234.27 Aligned_cols=112 Identities=49% Similarity=0.972 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCC
Q 033389 2 SSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 2 s~~~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~ 81 (120)
+++.+||++|++++...|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+
T Consensus 1 ~sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~ 80 (152)
T 2onu_A 1 GTSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80 (152)
T ss_dssp --CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTT
T ss_pred ChHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcC
Confidence 45679999999988778999999999999999999999999999999999999999999999999999999999999558
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHH-HHHHHhcc
Q 033389 82 GSVCLDVINQTWSPMFGKPSILFPSTHVT-ICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~~~~-i~~~l~s~ 118 (120)
|+||+++|.++|+|++++++||+ + |++||.+.
T Consensus 81 G~iCl~il~~~W~p~~~i~~vl~-----~ii~~Ll~~P 113 (152)
T 2onu_A 81 GSVCLDVINQTWTPLYSLVNVFE-----VFLPQLLTYP 113 (152)
T ss_dssp CBBCHHHHHHHCCTTCCHHHHHH-----THHHHHHHSC
T ss_pred CeEecccccccCCCCCCHHHHHH-----HHHHHHHhCC
Confidence 99999999999999999999999 8 57888754
No 25
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-39 Score=228.61 Aligned_cols=110 Identities=28% Similarity=0.611 Sum_probs=104.0
Q ss_pred CHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
++.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~- 82 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID- 82 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-
Confidence 36899999986 45778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC----CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVIN----QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~----~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|. ++|+|+++|++||+ +|+++|.+.
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~-----si~~ll~~p 120 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLT-----SIQLLMSEP 120 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHH-----HHHHHHHSC
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 69999999998 89999999999999 999999875
No 26
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.8e-39 Score=226.77 Aligned_cols=113 Identities=30% Similarity=0.572 Sum_probs=103.0
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +.+||++|++ +.++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 776 7899999985 5678899998875 389999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 72 IYHPNVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~--~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
+|||||+ .+|+||+++|.+ +|+|+++|++||+ +|+++|.+..
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 124 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVL-----GVQDLLDSPN 124 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 9999999 699999999987 7999999999999 9999998753
No 27
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2e-39 Score=227.19 Aligned_cols=112 Identities=24% Similarity=0.535 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHhCC-CCCcEEE-ecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCccc
Q 033389 1 MSSPSKRREMDLMKLM-MSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 1 Ms~~~~Rl~~el~~~~-~~~~~~~-~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 78 (120)
|+.+.+||++|++++. ++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 4568899999999864 4689998 7788999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
.+|+||+++|.++|+|+++|++||+ +|+++|.+..
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~Pn 117 (160)
T 1y8x_A 83 -LEGNVCLNILREDWKPVLTINSIIY-----GLQYLFLEPN 117 (160)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred -CCCeEEcccchhhccCCCCHHHHHH-----HHHHHHhCCC
Confidence 5899999999999999999999999 9999998753
No 28
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=7.8e-40 Score=238.81 Aligned_cols=110 Identities=29% Similarity=0.671 Sum_probs=104.2
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 6899999986 5567899999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~-----sI~sLL~~P 136 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALL-----SIQALLSDP 136 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCEEEchhhcccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 899999999999999999999999 999999875
No 29
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-39 Score=231.94 Aligned_cols=110 Identities=28% Similarity=0.660 Sum_probs=101.3
Q ss_pred HHHHHHHHHHh---CCC-------------CCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q 033389 4 PSKRREMDLMK---LMM-------------SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67 (120)
Q Consensus 4 ~~~Rl~~el~~---~~~-------------~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 67 (120)
+.+||++|+++ .++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 67899999863 343 69999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 68 FVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 68 f~t~i~HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|.|+||||||+..+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~p 158 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALL-----SIQAMLADP 158 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHH-----HHHHHHHSC
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHH-----HHHHHHhCC
Confidence 9999999999955899999999999999999999999 999999874
No 30
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-39 Score=225.96 Aligned_cols=110 Identities=25% Similarity=0.556 Sum_probs=102.8
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCC-----CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMIND-----GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~-----n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
+.+||+||++ +.+++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 7899999985 56788999999876 999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 76 NVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nV~~~~G~icl~~l~~--~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
||+ .+|+||+++|.+ +|+|+++|++||+ +|+++|.+..
T Consensus 91 nV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~-----~i~~ll~~P~ 130 (163)
T 3rcz_B 91 NVY-PSGTVCLSILNEEEGWKPAITIKQILL-----GIQDLLDDPN 130 (163)
T ss_dssp TBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred CCC-CCCcEeccccCCCCCcCCcCcHHHHHH-----HHHHHHhCCC
Confidence 999 699999999975 4999999999999 9999998753
No 31
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=5.4e-39 Score=227.33 Aligned_cols=109 Identities=28% Similarity=0.673 Sum_probs=101.7
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecC-CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+||++|++ +.++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~- 96 (172)
T 2awf_A 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD- 96 (172)
T ss_dssp THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC-
Confidence 6889998885 4678899999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|. ++|+|+++|++||+ +|+++|.+.
T Consensus 97 ~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~-----sI~sll~~P 143 (172)
T 2awf_A 97 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI-----SVISMLADP 143 (172)
T ss_dssp TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHH-----HHHHHHSCC
T ss_pred CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHH-----HHHHHHHCc
Confidence 58999999996 68999999999999 999999865
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=4.1e-39 Score=239.64 Aligned_cols=113 Identities=25% Similarity=0.755 Sum_probs=105.2
Q ss_pred CCC-HHHHHHHHHHhC------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~~------~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
||+ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 444 689999999754 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||||+..+|+||+++|.++|+|+++|++||+ +|+++|.++
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~~ll~~p 173 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAA 173 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHH-----HHHHHhcCC
Confidence 9999955899999999999999999999999 999999875
No 33
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=7e-39 Score=224.56 Aligned_cols=113 Identities=27% Similarity=0.506 Sum_probs=103.8
Q ss_pred CCC-HHHHHHHHHH---hCCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~~Rl~~el~---~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +.+||++|++ +.++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 665 6799999986 5677899998864 589999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 72 IYHPNVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~--~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
+|||||+ .+|+||+++|.+ +|+|+++|++||+ +|+++|.+..
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 127 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILL-----GIQELLNEPN 127 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHH-----HHHHHHhCCC
Confidence 9999999 699999999975 8999999999999 9999998753
No 34
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=8e-39 Score=224.12 Aligned_cols=112 Identities=19% Similarity=0.319 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhC---CCCC-cEEEec-CCC--ceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCc
Q 033389 4 PSKRREMDLMKL---MMSD-YKVEMI-NDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 4 ~~~Rl~~el~~~---~~~~-~~~~~~-~~n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
+.+||++|++++ +++| +++.+. ++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 678999999753 4567 788874 454 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033389 77 VDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~il~~~~~~~i~~~l~s~~~ 120 (120)
|+..+|+||+++|. ++|+|+++|++||+ +|+++|.++-|
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~-----sI~~ll~~~pn 146 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQ-----ELRRLMMSKEN 146 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHH-----HHHHHHTSTTT
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHH-----HHHHHHccCCC
Confidence 99559999999998 89999999999999 99999976543
No 35
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=233.21 Aligned_cols=109 Identities=51% Similarity=1.027 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033389 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 4 ~~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~ 83 (120)
+.+||++|++++.++|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+..+|+
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999888889999987 578999999999999999999999999999999999999999999999999954999
Q ss_pred EEccCCCCCCCCCCChhhccccCCHHH-HHHHHhcc
Q 033389 84 VCLDVINQTWSPMFGKPSILFPSTHVT-ICQMLQSS 118 (120)
Q Consensus 84 icl~~l~~~W~p~~~i~~il~~~~~~~-i~~~l~s~ 118 (120)
||+++|.++|+|+++|++||+ + |+++|.+.
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~-----s~I~~Ll~~P 135 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFE-----SFLPQLLAYP 135 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHH-----THHHHHHHSC
T ss_pred EeccccccCCCCCCCHHHHHH-----HHHHHHHhCC
Confidence 999999999999999999999 9 99999865
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-38 Score=227.17 Aligned_cols=110 Identities=23% Similarity=0.507 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHhCC-CCCcEEE-ecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 3 SPSKRREMDLMKLM-MSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 3 ~~~~Rl~~el~~~~-~~~~~~~-~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
.+.+||++|++++. ++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 26 ~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~-~ 103 (180)
T 2nvu_C 26 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-L 103 (180)
T ss_dssp HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC-C
Confidence 47899999999864 4689998 7789999999998 99999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
+|.||+++|.++|+|+++|++||+ +|+++|.+..
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~-----si~~ll~~Pn 137 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIY-----GLQYLFLEPN 137 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCcEEcccccccCCCCCCHHHHHH-----HHHHHHhCCC
Confidence 999999999999999999999999 9999998753
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=7.8e-39 Score=226.50 Aligned_cols=113 Identities=21% Similarity=0.511 Sum_probs=100.6
Q ss_pred CCC-HHHHHHHHHHh----C-C------CC---CcEEEe-cCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 033389 1 MSS-PSKRREMDLMK----L-M------MS---DYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~----~-~------~~---~~~~~~-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP 64 (120)
||+ +.+||++|+++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 665 78999999863 3 2 22 356777 7789999999999999999999999999999999999999
Q ss_pred eEEEec-CcccCcccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 65 SIGFVN-KIYHPNVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 65 ~v~f~t-~i~HpnV~~~~G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+|.| +||||||+..+|+||+++|. ++|+|+++|++||+ +|+++|.+.
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~-----si~~ll~~p 133 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVH-----AVWRLLREP 133 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 999999 99999996468999999998 89999999999999 999999864
No 38
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.2e-38 Score=218.35 Aligned_cols=112 Identities=20% Similarity=0.375 Sum_probs=98.9
Q ss_pred CCC--HHHHHHHHHHhC----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q 033389 1 MSS--PSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~--~~~Rl~~el~~~----~~~~~~~~~~~-~--n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +.+||++|++++ +..|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 665 678999999753 46789998854 3 59999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeE--EccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 72 IYHPNVDELSGSV--CLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 72 i~HpnV~~~~G~i--cl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||||||+..+|+| |+++|. +|+|++++++||+ +|+++|.++
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~-----~i~~ll~~p 124 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLL-----DLRKEMATP 124 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHH-----HHHHHHTSH
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHH-----HHHHHHcCC
Confidence 9999999545999 899886 7999999999999 999999874
No 39
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2.5e-39 Score=236.02 Aligned_cols=112 Identities=31% Similarity=0.701 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHH---hCCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcc
Q 033389 2 SSPSKRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 2 s~~~~Rl~~el~---~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 77 (120)
|++.+||++|++ +.+++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp CTTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 567899999986 45778999999876 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 78 DELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+..+|+||+++|.++|+|++||++||+ +|+++|.++
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~-----sI~sLL~~P 116 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALI-----SLQALLQSP 116 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHH-----HHHHHHTSC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 944999999999999999999999999 999999875
No 40
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.4e-38 Score=220.53 Aligned_cols=108 Identities=27% Similarity=0.522 Sum_probs=101.7
Q ss_pred HHHHHHHHHH---hCCCCCcEE-EecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLM---KLMMSDYKV-EMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~-~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+||++|++ +.++.|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~- 82 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD- 82 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC-
Confidence 6799999985 557789999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCC-CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVI-NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++| .++|+|+++|++||+ +|+++|.+.
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~-----~i~~ll~~p 117 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLE-----ALNVLVNRP 117 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 5999999999 899999999999999 999999875
No 41
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=224.07 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHh---CCCCC-cEEEe-cCCC--ceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccC
Q 033389 3 SPSKRREMDLMK---LMMSD-YKVEM-INDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 3 ~~~~Rl~~el~~---~~~~~-~~~~~-~~~n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
.+.+||++|+++ .+++| +++.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP 114 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 114 (170)
T ss_dssp CHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccC
Confidence 378999999974 45567 67887 4554 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033389 76 NVDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 76 nV~~~~G~icl~~l~--~~W~p~~~i~~il~~~~~~~i~~~l~s~~~ 120 (120)
||+..+|+||+++|. ++|+|++||++||+ +|+++|.++-|
T Consensus 115 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~-----sI~~ll~~~pn 156 (170)
T 2hlw_A 115 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQ-----ELRRLMMSKEN 156 (170)
T ss_dssp SBCSSSCBBCTTTCHHHHTCCSSCCHHHHHH-----HHHHHHHSTTT
T ss_pred CEeCCCCEEEhhhcCCCCCCCccCcHHHHHH-----HHHHHHccCCC
Confidence 999559999999998 89999999999999 99999987543
No 42
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-39 Score=226.42 Aligned_cols=109 Identities=54% Similarity=0.977 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033389 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 4 ~~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~ 83 (120)
+.+||++|++++....+.+ ..++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+..+|+
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 4799999998765544556 457899999999999999999999999999999999999999999999999999955999
Q ss_pred EEccCCCCCCCCCCChhhccccCCHHHH-HHHHhcc
Q 033389 84 VCLDVINQTWSPMFGKPSILFPSTHVTI-CQMLQSS 118 (120)
Q Consensus 84 icl~~l~~~W~p~~~i~~il~~~~~~~i-~~~l~s~ 118 (120)
||+++|.++|+|+++|++||+ +| ++||.+.
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~-----sil~~ll~~P 122 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFD-----VFLPQLLRYP 122 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHH-----THHHHHHHSC
T ss_pred EeccccccCCCCCCcHHHHHH-----HHHHHHHhCC
Confidence 999999999999999999999 97 6888754
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1e-37 Score=217.75 Aligned_cols=110 Identities=21% Similarity=0.345 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHhC----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccC
Q 033389 3 SPSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 3 ~~~~Rl~~el~~~----~~~~~~~~~~~-~--n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
.+.+||++|++++ +.+|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 21 ~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 100 (156)
T 2q0v_A 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100 (156)
T ss_dssp CHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccC
Confidence 4789999999753 45689998854 3 599999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeE---EccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033389 76 NVDELSGSV---CLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nV~~~~G~i---cl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~~ 119 (120)
||+ .+|+| |+++|. +|+|+++|++||+ +|+++|.+.-
T Consensus 101 NV~-~~G~icisCL~iL~-~WsP~~ti~~vL~-----sI~~ll~~Pn 140 (156)
T 2q0v_A 101 CVD-NCGRVIKNNLHILK-NWNRNYTIETILI-----SLRQEMLSSA 140 (156)
T ss_dssp TBC-TTSBBCGGGSHHHH-TCCTTCCHHHHHH-----HHHHHTTSTT
T ss_pred CCc-cCCeEehhhccccc-CCCCcCcHHHHHH-----HHHHHHhCCC
Confidence 999 58999 888887 5999999999999 9999998763
No 44
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1e-37 Score=219.70 Aligned_cols=109 Identities=25% Similarity=0.546 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHh---CCCCCcEEEec-CCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcc
Q 033389 2 SSPSKRREMDLMK---LMMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 2 s~~~~Rl~~el~~---~~~~~~~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 77 (120)
+.+.+||++|+++ .++.|+++.+. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 4478999999864 46789999865 57899999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCC------CCCCCCChhhccccCCHHHHHHHHhc
Q 033389 78 DELSGSVCLDVINQ------TWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 78 ~~~~G~icl~~l~~------~W~p~~~i~~il~~~~~~~i~~~l~s 117 (120)
+ .+|+||+++|.. +|+|+++|++||+ +|+++|.+
T Consensus 92 ~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~-----~i~~ll~~ 131 (167)
T 3fn1_B 92 T-ETGEICLSLLREHSIDGTGWAPTRTLKDVVW-----GLNSLFTD 131 (167)
T ss_dssp C-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHH-----HHHHTTTT
T ss_pred C-CCCEEechhhccCCCCCCCCCCcCcHHHHHH-----HHHHHHcC
Confidence 9 699999999975 7999999999999 99999987
No 45
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.1e-37 Score=221.37 Aligned_cols=110 Identities=26% Similarity=0.511 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHhCC-CCCcEEE----ecCCCce---eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 2 SSPSKRREMDLMKLM-MSDYKVE----MINDGMQ---EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 2 s~~~~Rl~~el~~~~-~~~~~~~----~~~~n~~---~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
+++.+||++|++++. ++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 28 s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 457899999998875 5689998 7889999 9999997 78899999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
||||+ .+|+||+++|.++|+|+++|++||+ +|+++|.+.
T Consensus 107 HPnV~-~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p 145 (190)
T 3o2u_A 107 HPNID-LKGNVCLNILREDWSPALDLQSIIT-----GLLFLFLEP 145 (190)
T ss_dssp CTTBC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred cCCCC-CCCeEechhccCCCCCCCCHHHHHH-----HHHHHHhCC
Confidence 99999 5999999999999999999999999 999999864
No 46
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2.8e-37 Score=214.90 Aligned_cols=108 Identities=28% Similarity=0.625 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhC---CCCCcEEEe-cCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 4 PSKRREMDLMKL---MMSDYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~~Rl~~el~~~---~~~~~~~~~-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
+.+||++|++++ +++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID- 80 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC-
Confidence 568999999755 456887554 6789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|. ++|+|++++++||+ +|+++|.+.
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~-----~i~~ll~~p 115 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQ-----SLIALVNDP 115 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHH-----HHHHHHcCC
Confidence 59999999996 89999999999999 999999875
No 47
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.3e-37 Score=219.17 Aligned_cols=103 Identities=25% Similarity=0.502 Sum_probs=95.5
Q ss_pred CCC-HHHHHHHHHHh---CC------------CCCcEEEecCCCceeEEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCC
Q 033389 1 MSS-PSKRREMDLMK---LM------------MSDYKVEMINDGMQEFYVEFNGPKESSYQ--GGVWKIRVELPDAYPYK 62 (120)
Q Consensus 1 Ms~-~~~Rl~~el~~---~~------------~~~~~~~~~~~n~~~w~~~i~gp~~t~y~--gg~f~~~i~fp~~YP~~ 62 (120)
||+ +.|||++|+++ .+ ..++.+.+.++|+++|+++|.||++|+|+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 666 68999999863 33 56889999999999999999999999999 99999999999999999
Q ss_pred CCeEEEecCcccCcccCCCCeEEccCCCCCCCCCCChhhccc
Q 033389 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILF 104 (120)
Q Consensus 63 pP~v~f~t~i~HpnV~~~~G~icl~~l~~~W~p~~~i~~il~ 104 (120)
||+|+|.|++|||||+ .+|+||+++|.++|+|+++++++|+
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll 125 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIK 125 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHH
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHH
Confidence 9999999999999999 6999999999999999999999866
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2e-36 Score=237.52 Aligned_cols=110 Identities=32% Similarity=0.705 Sum_probs=104.6
Q ss_pred CHHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccC
Q 033389 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 79 (120)
.+.|||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~- 81 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN- 81 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC-
Confidence 47899999985 56788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
.+|+||+++|.++|+|++|+++||+ +|+++|.++
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~-----~i~~ll~~p 115 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLL-----SICSLLCDP 115 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCeEeCcccccCCCccccHHHHHH-----HHHHHHcCC
Confidence 5999999999999999999999999 999999875
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.5e-37 Score=219.84 Aligned_cols=109 Identities=22% Similarity=0.437 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhC---C---CCCcEEEecCCCceeEEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCCCCCe
Q 033389 4 PSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGP-KESSYQG-----------GVWKIRVELPDAYPYKSPS 65 (120)
Q Consensus 4 ~~~Rl~~el~~~---~---~~~~~~~~~~~n~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~fp~~YP~~pP~ 65 (120)
+.+||++|++++ + ..++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 679999999754 3 46799999999999999999998 8999998 8999999999999999999
Q ss_pred EEEecCcccC-cccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 66 IGFVNKIYHP-NVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 66 v~f~t~i~Hp-nV~~~~G~icl~~l~-~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
|+|.+++||| ||+ .+|+||+++|. ++|+|+++|++||+ +|+++|.++
T Consensus 108 V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~-----sI~slL~~p 156 (186)
T 1zuo_A 108 VRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIM-----QINATLVKG 156 (186)
T ss_dssp EEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHH-----HHHHHHHHT
T ss_pred EEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHH-----HHHHHHcCC
Confidence 9999999999 699 69999999997 78999999999999 999999864
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.8e-36 Score=213.31 Aligned_cols=107 Identities=21% Similarity=0.482 Sum_probs=94.4
Q ss_pred HHHHHHHHHH---hCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCC
Q 033389 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ ||||+ .
T Consensus 15 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~-~ 91 (187)
T 2f4w_A 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK-C 91 (187)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec-c
Confidence 6799999986 5677899999999999999999999999999999999999999999999999999999 99999 5
Q ss_pred CCeEEccCC---CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033389 81 SGSVCLDVI---NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l---~~~W~p~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+|+||+++| .++|+|+++|++||+ +|+++|.++
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~-----si~sll~~p 127 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILT-----GLLSFMVEK 127 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHH-----HHHHHhcCC
Confidence 999999999 689999999999999 999999764
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=220.33 Aligned_cols=107 Identities=21% Similarity=0.483 Sum_probs=98.2
Q ss_pred HHHHHHHHHHh---CCCC----CcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC-----
Q 033389 4 PSKRREMDLMK---LMMS----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK----- 71 (120)
Q Consensus 4 ~~~Rl~~el~~---~~~~----~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~----- 71 (120)
+.+||++|+++ .++. ++.+.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 68999999864 3444 45677889999999999999999999999999999999999999999999998
Q ss_pred cccCcccCCCCeEEccCCC-------CCCCCCC-ChhhccccCCHHHHHHHHh
Q 033389 72 IYHPNVDELSGSVCLDVIN-------QTWSPMF-GKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 72 i~HpnV~~~~G~icl~~l~-------~~W~p~~-~i~~il~~~~~~~i~~~l~ 116 (120)
+|||||+ .+|+||+++|. ++|+|++ +|++||+ +|++||.
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLl-----sIqsLL~ 203 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLV-----SVQSLIL 203 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHH-----HHHHHTS
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHH-----HHHHHHc
Confidence 9999999 69999999997 6899999 8999999 9999995
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=2.2e-29 Score=175.69 Aligned_cols=96 Identities=18% Similarity=0.317 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEecC-cc
Q 033389 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (120)
Q Consensus 5 ~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (120)
.+||++|++++.. ++.+.++|+..|.+.+.||+||+|+|| .|.++|.||.+||++||+|+|.++ +|
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 6899999986655 366777899999999999999999999 999999999999999999999998 99
Q ss_pred cCcccCCCCeEEccCC-CC---CCCCCCChhhccc
Q 033389 74 HPNVDELSGSVCLDVI-NQ---TWSPMFGKPSILF 104 (120)
Q Consensus 74 HpnV~~~~G~icl~~l-~~---~W~p~~~i~~il~ 104 (120)
||||| .+|+||+|+| +. .|+|.++|..+|.
T Consensus 111 hpnmY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 111 TAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp CSSBC-TTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCC-CCCcEechhhccccccccCCccCHHHHHh
Confidence 99999 5999999999 43 4569999999985
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.76 E-value=5.6e-19 Score=123.42 Aligned_cols=91 Identities=19% Similarity=0.391 Sum_probs=77.8
Q ss_pred EEEecCCCceeEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeEEEec-------C---cc-cCcccCCCCeEEc
Q 033389 21 KVEMINDGMQEFYVEFNGPKESSYQGGV---WKIRVELPDAYPYKSPSIGFVN-------K---IY-HPNVDELSGSVCL 86 (120)
Q Consensus 21 ~~~~~~~n~~~w~~~i~gp~~t~y~gg~---f~~~i~fp~~YP~~pP~v~f~t-------~---i~-HpnV~~~~G~icl 86 (120)
.+...+|...++-+.+.|.-..+|+|+. |.+.|-||.+||++||.|.|.+ + |+ ||||| .+|+||+
T Consensus 52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD-~~G~I~l 130 (162)
T 3r3q_A 52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID-SNGWIAL 130 (162)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBC-TTSBBCC
T ss_pred eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCC-CCCcEeC
Confidence 3445566677777788887779999998 8899999999999999998865 1 77 99999 6999999
Q ss_pred cCCCCCCCC-CCChhhccccCCHHHHHHHHhcc
Q 033389 87 DVINQTWSP-MFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 87 ~~l~~~W~p-~~~i~~il~~~~~~~i~~~l~s~ 118 (120)
+.|. +|+| ..++.++|. +|+++|.+.
T Consensus 131 pyL~-~W~p~~s~L~~ll~-----~l~~lf~ep 157 (162)
T 3r3q_A 131 PILH-AWDPAAMNLIMVVQ-----ELMSLLHEP 157 (162)
T ss_dssp GGGG-SCCGGGCCHHHHHH-----HHHHTTSCC
T ss_pred cccc-cCCCCcCcHHHHHH-----HHHHHhcCC
Confidence 9995 6999 689999999 999998875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.70 E-value=3e-19 Score=122.41 Aligned_cols=85 Identities=16% Similarity=0.365 Sum_probs=69.2
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEecC-cc
Q 033389 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (120)
Q Consensus 5 ~~Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (120)
.+||.+|++.+.. .++..+++-..|...+.||.||+|+|+ .|.+++.||.+||..||.|+|.+. .+
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4688888864321 122223344679999999999999999 999999999999999999999995 89
Q ss_pred cCcccCCCCeEEccCCCCCCCCC
Q 033389 74 HPNVDELSGSVCLDVINQTWSPM 96 (120)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~ 96 (120)
|||++ .+|+||++++ |+|.
T Consensus 113 t~kmY-r~GkICLdIh---wkPl 131 (168)
T 3kpa_A 113 TVKMY-RGGKICMTTH---FFPL 131 (168)
T ss_dssp CSSEE-TTTEECCCTT---HHHH
T ss_pred Ccccc-CCCcEEeccc---cchh
Confidence 99999 6999999997 6654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.59 E-value=1.8e-15 Score=104.04 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=70.9
Q ss_pred CCceeEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecC------cccCcccCCCCeEEccCCCCCCCC-CC
Q 033389 27 DGMQEFYVEFNGPKESSYQGGVWKI--RVELPDAYPYKSPSIGFVNK------IYHPNVDELSGSVCLDVINQTWSP-MF 97 (120)
Q Consensus 27 ~n~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HpnV~~~~G~icl~~l~~~W~p-~~ 97 (120)
.++..|.++|. .+|+|+.|.+ .|-||.+||++||.| |.++ ..|+||| .+|+||++.|.+ |++ ..
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTTTC
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCCCC
Confidence 57999999997 5799999995 999999999999999 7666 5899999 699999999966 987 89
Q ss_pred ChhhccccCCHHHHHHHHhcc
Q 033389 98 GKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 98 ~i~~il~~~~~~~i~~~l~s~ 118 (120)
++.+++. .+++.+.++
T Consensus 124 nL~~ll~-----~l~~~F~~e 139 (146)
T 3obq_A 124 DLLGLIQ-----VMIVVFGDE 139 (146)
T ss_dssp CHHHHHH-----HHHHHHHHS
T ss_pred CHHHHHH-----HHHHHHhhC
Confidence 9999999 999988765
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.0099 Score=38.75 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHhCC---CCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 033389 1 MSSPSKRREMDLMKLM---MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 1 Ms~~~~Rl~~el~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
|+....+...|+.-+. ...+.+ ..+....+.+.+..-.+..-+.-.+.+.+.||++||..||.|...+
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3334455566664332 333332 3333456666665222222234478999999999999999998765
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.077 Score=34.86 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=29.9
Q ss_pred ceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 033389 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+.+..+ .-..-.+.+.+.+|++||..+|.|.+.+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4567777763222 2123478899999999999999999875
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.81 E-value=0.12 Score=33.38 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=29.1
Q ss_pred ceeEEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCeEEEec
Q 033389 29 MQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~t~y--~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+..+.+..- ..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 4556666653222111 12478899999999999999998876
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.27 E-value=0.31 Score=34.21 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCCCcEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcccCcccCCCCeEEc
Q 033389 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86 (120)
Q Consensus 7 Rl~~el~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~icl 86 (120)
||.+|+.+.-=.. +.-.+.++....+++.... |....+.|.++.+||.++|.+...-|. |.
T Consensus 5 ~li~Ei~~iGW~~--l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---------- 65 (186)
T 3zqs_A 5 SLIEEIGTLGWDK--LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF---------- 65 (186)
T ss_dssp SHHHHHHHHCGGG--EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC----------
T ss_pred HHHHHHHHhCCce--eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc----------
Confidence 5666665432111 2333567888888887443 678899999999999999977655433 11
Q ss_pred cCCCCCCCCCCChhhccccCCHHHHHHHHh
Q 033389 87 DVINQTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 87 ~~l~~~W~p~~~i~~il~~~~~~~i~~~l~ 116 (120)
.-.|+|..++.+++. ..+..|.
T Consensus 66 ---~~~w~~~ssL~~v~~-----qF~~~Le 87 (186)
T 3zqs_A 66 ---CASWTPQSSLISIYS-----QFLAAIE 87 (186)
T ss_dssp ---CCCCCTTCCHHHHHH-----HHHHHHH
T ss_pred ---ccccCCCccHHHHHH-----HHHHHHH
Confidence 135999999999988 7776664
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.93 E-value=0.1 Score=33.83 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=28.9
Q ss_pred ceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 033389 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+.. .+..=..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4577777763 2211113478999999999999999987653
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.83 E-value=0.22 Score=33.53 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecC
Q 033389 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.+.+.+.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=92.17 E-value=0.082 Score=34.59 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEec
Q 033389 47 GVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
-.+.+.+.||++||..+|.|....
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEec
Confidence 468999999999999999998743
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.99 E-value=0.17 Score=33.93 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecC
Q 033389 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.+.+.+.+|++||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999988764
No 64
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=53.35 E-value=46 Score=22.87 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 27 ~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
+.-++|.|-+.|+.+.-...-+=++...+.+.||. |.-.+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 45789999999887654445567788889999975 6665655533
No 65
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=43.40 E-value=69 Score=21.17 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=31.8
Q ss_pred ceeEE--EEEeCCCCCCCC-CCEEEEEEEcCCCCCCCCCeEEEecCcc
Q 033389 29 MQEFY--VEFNGPKESSYQ-GGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 29 ~~~w~--~~i~gp~~t~y~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
..+|. +.+.|+.|.... .-+=++...+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 47998 888998887654 4566678888898874 7777776644
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=31.95 E-value=49 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=21.9
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q 033389 45 QGGVWKIRVELPDAYPY-----KSPSIGFV 69 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (120)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 36889999999999998 78999886
No 67
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=24.79 E-value=47 Score=15.12 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=10.2
Q ss_pred HHHHHHHHHH---hCCCCC
Q 033389 4 PSKRREMDLM---KLMMSD 19 (120)
Q Consensus 4 ~~~Rl~~el~---~~~~~~ 19 (120)
...|++.|+. .+++.|
T Consensus 6 eldrlllelnavqhnppsg 24 (26)
T 3u3c_B 6 ELDRLLLELNAVQHNPPSG 24 (26)
T ss_pred HHHHHHHHHhhhccCCCCC
Confidence 4678888884 344444
No 68
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.76 E-value=19 Score=21.92 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCcEEEec--CCCceeEEEEEe
Q 033389 5 SKRREMDLMKLMMSDYKVEMI--NDGMQEFYVEFN 37 (120)
Q Consensus 5 ~~Rl~~el~~~~~~~~~~~~~--~~n~~~w~~~i~ 37 (120)
.+||...++++...|+.+.-. ++|+.+|.-.|.
T Consensus 39 ekrleekiqklksqgfevrkvkddddidkwidkik 73 (110)
T 2lta_A 39 EKRLEEKIQKLKSQGFEVRKVKDDDDIDKWIDKIK 73 (110)
Confidence 467777777888888887655 457999987776
No 69
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=21.10 E-value=1.1e+02 Score=18.71 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.8
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEec
Q 033389 47 GVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
..+...|.|+..|+. +|+|.+.-
T Consensus 29 R~~~~~V~F~~~F~~-~P~V~v~l 51 (101)
T 2ccv_A 29 RELAKNITFASPYCR-PPVVLLSI 51 (101)
T ss_dssp EEEEEEEECSSCCSS-CCEEEEEE
T ss_pred eEEEEEeEeCcccCC-CCEEEEEe
Confidence 467888999999985 89998764
No 70
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=20.69 E-value=1.5e+02 Score=22.15 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCC-cEEEecCCCceeEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 033389 7 RREMDLMKLMMSD-YKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 7 Rl~~el~~~~~~~-~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP 64 (120)
|...|+.+..+.+ +++...++ ++.|.. .+..|.+...-+++||.-++
T Consensus 85 k~l~ei~r~Lp~~~V~i~~~~~-----~l~i~~------g~~~f~l~~l~~~~fP~~~~ 132 (378)
T 1vpk_A 85 DVIQKMVKVLPDEITELSLEGD-----ALVISS------GSTVFRITTMPADEFPEITP 132 (378)
T ss_dssp -CHHHHHTTCCSSEEEEEEETT-----EEEEEE------TTEEEEEECBCCTTSCCCCC
T ss_pred HHHHHHHHhCCCCcEEEEEeCC-----EEEEEE------CCEEEEEcccChHHCCCCCC
Confidence 5566776655554 55555443 355552 24567777766789997764
Done!