Query 033390
Match_columns 120
No_of_seqs 102 out of 405
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4680 Uncharacterized conser 100.0 1.2E-28 2.7E-33 165.9 11.0 103 17-119 21-123 (153)
2 cd00917 PG-PI_TP The phosphati 100.0 7E-28 1.5E-32 162.0 12.8 98 23-120 1-104 (122)
3 smart00737 ML Domain involved 99.9 2.4E-23 5.1E-28 138.6 12.0 95 23-120 1-100 (118)
4 PF02221 E1_DerP2_DerF2: ML do 99.9 6.3E-22 1.4E-26 133.7 8.8 101 20-120 1-114 (134)
5 cd00912 ML The ML (MD-2-relate 99.9 3.7E-21 8E-26 129.8 11.6 94 23-119 1-108 (127)
6 cd00918 Der-p2_like Several gr 99.9 5E-21 1.1E-25 128.4 9.0 97 23-119 1-100 (120)
7 cd00916 Npc2_like Niemann-Pick 99.8 8.5E-21 1.8E-25 127.8 9.1 97 23-119 1-104 (123)
8 cd00258 GM2-AP GM2 activator p 99.8 1.4E-18 3E-23 120.8 9.9 100 20-120 2-140 (162)
9 KOG4063 Major epididymal secre 99.7 5.7E-17 1.2E-21 111.0 9.9 119 1-119 1-135 (158)
10 cd00915 MD-1_MD-2 MD-1 and MD- 99.6 3.2E-15 7E-20 101.2 9.5 92 21-119 11-111 (130)
11 PF14558 TRP_N: ML-like domain 98.8 4.6E-08 9.9E-13 67.2 8.5 96 20-119 4-107 (141)
12 smart00675 DM11 Domains in hyp 97.0 0.0081 1.7E-07 42.4 8.7 96 20-119 10-150 (164)
13 PF14524 Wzt_C: Wzt C-terminal 96.3 0.014 3E-07 38.7 5.7 85 33-120 12-104 (142)
14 PF15418 DUF4625: Domain of un 96.3 0.056 1.2E-06 36.8 8.4 74 45-119 31-111 (132)
15 smart00697 DM8 Repeats found i 96.2 0.0072 1.6E-07 37.8 3.5 29 92-120 41-73 (93)
16 PF06477 DUF1091: Protein of u 96.1 0.0095 2.1E-07 36.5 3.5 28 92-119 50-81 (81)
17 PLN00044 multi-copper oxidase- 95.4 0.18 4E-06 42.2 9.5 83 30-117 28-126 (596)
18 PLN02168 copper ion binding / 95.0 0.2 4.3E-06 41.6 8.7 72 31-105 28-115 (545)
19 PF07705 CARDB: CARDB; InterP 94.4 0.35 7.6E-06 29.9 7.0 76 33-119 3-79 (101)
20 PLN02991 oxidoreductase 94.3 0.33 7.2E-06 40.3 8.4 72 31-105 30-117 (543)
21 PLN02354 copper ion binding / 93.7 0.42 9E-06 39.7 7.8 72 31-105 29-116 (552)
22 PLN02835 oxidoreductase 93.5 0.72 1.6E-05 38.2 9.0 80 31-117 31-126 (539)
23 PLN02792 oxidoreductase 92.0 0.79 1.7E-05 38.0 7.2 71 32-105 19-105 (536)
24 PF10633 NPCBM_assoc: NPCBM-as 91.5 0.26 5.7E-06 29.9 3.0 68 47-120 2-72 (78)
25 PF00868 Transglut_N: Transglu 90.7 0.67 1.5E-05 30.7 4.7 74 45-120 28-113 (118)
26 PF05404 TRAP-delta: Transloco 89.9 5.4 0.00012 28.3 9.2 79 24-119 18-98 (167)
27 PLN02604 oxidoreductase 89.4 9.3 0.0002 31.9 11.3 79 31-117 26-122 (566)
28 PF07732 Cu-oxidase_3: Multico 89.1 0.68 1.5E-05 30.5 3.7 25 90-117 69-93 (117)
29 PF04729 ASF1_hist_chap: ASF1 88.4 1.2 2.7E-05 31.1 4.7 81 33-114 3-86 (154)
30 TIGR03390 ascorbOXfungal L-asc 87.3 3.7 8E-05 34.0 7.6 73 30-105 9-99 (538)
31 KOG1263 Multicopper oxidases [ 86.4 4.3 9.2E-05 34.0 7.5 20 85-105 96-117 (563)
32 TIGR03389 laccase laccase, pla 85.6 5.4 0.00012 33.0 7.8 13 32-44 6-18 (539)
33 PF02221 E1_DerP2_DerF2: ML do 84.9 2.3 5E-05 27.9 4.5 34 42-75 84-117 (134)
34 cd00912 ML The ML (MD-2-relate 82.9 2.8 6.1E-05 27.7 4.2 36 84-119 15-51 (127)
35 PLN02191 L-ascorbate oxidase 82.6 10 0.00023 31.7 8.3 78 32-117 26-121 (574)
36 smart00737 ML Domain involved 81.2 3.9 8.5E-05 26.5 4.4 34 42-75 70-103 (118)
37 TIGR01480 copper_res_A copper- 80.1 3.2 7E-05 34.9 4.5 79 31-117 47-140 (587)
38 cd00918 Der-p2_like Several gr 79.9 4.4 9.5E-05 27.0 4.3 34 43-76 72-105 (120)
39 PF02402 Lysis_col: Lysis prot 78.6 3.9 8.4E-05 22.6 3.0 29 1-29 1-30 (46)
40 PF12984 DUF3868: Domain of un 78.2 9.3 0.0002 25.2 5.5 36 33-72 29-66 (115)
41 PF00339 Arrestin_N: Arrestin 77.7 1.4 3.1E-05 29.1 1.5 23 92-114 87-109 (149)
42 cd00916 Npc2_like Niemann-Pick 77.3 6 0.00013 26.2 4.4 34 42-75 75-108 (123)
43 KOG3265 Histone chaperone invo 76.7 18 0.0004 27.0 7.0 78 33-113 3-85 (250)
44 PRK10965 multicopper oxidase; 72.1 10 0.00022 31.4 5.3 23 91-117 116-139 (523)
45 COG5137 Histone chaperone invo 72.1 24 0.00052 26.3 6.7 76 33-109 3-79 (279)
46 TIGR03388 ascorbase L-ascorbat 65.7 41 0.0009 27.9 7.7 22 91-117 77-99 (541)
47 PF01835 A2M_N: MG2 domain; I 64.8 7.2 0.00016 24.3 2.5 66 47-120 12-82 (99)
48 PF09608 Alph_Pro_TM: Putative 63.0 7.2 0.00016 29.1 2.5 20 101-120 156-175 (236)
49 PF08139 LPAM_1: Prokaryotic m 58.5 7.7 0.00017 18.8 1.3 8 2-9 8-15 (25)
50 PRK13792 lysozyme inhibitor; P 57.7 24 0.00051 23.9 4.1 12 1-12 1-12 (127)
51 PF10633 NPCBM_assoc: NPCBM-as 57.6 32 0.00069 20.5 4.4 28 45-72 45-72 (78)
52 COG1952 SecB Preprotein transl 57.5 15 0.00032 25.8 3.1 26 69-94 76-105 (157)
53 PRK03757 hypothetical protein; 56.2 70 0.0015 22.7 6.6 75 1-78 1-80 (191)
54 PRK09810 entericidin A; Provis 55.5 11 0.00024 20.4 1.8 16 1-16 2-17 (41)
55 PRK10449 heat-inducible protei 54.1 32 0.00069 23.3 4.4 16 1-16 1-16 (140)
56 COG1470 Predicted membrane pro 53.0 16 0.00034 30.2 3.0 27 94-120 437-464 (513)
57 PF03443 Glyco_hydro_61: Glyco 51.5 14 0.0003 27.1 2.4 17 103-119 137-153 (218)
58 COG2353 Uncharacterized conser 51.4 71 0.0015 22.9 6.0 67 17-86 19-86 (192)
59 TIGR02186 alph_Pro_TM conserve 50.8 17 0.00036 27.6 2.7 18 102-119 182-199 (261)
60 PF12690 BsuPI: Intracellular 50.2 19 0.00041 22.2 2.5 26 93-119 54-80 (82)
61 PRK02710 plastocyanin; Provisi 49.7 53 0.0011 21.4 4.8 16 39-54 42-59 (119)
62 cd00917 PG-PI_TP The phosphati 48.2 44 0.00094 21.9 4.2 32 43-75 76-107 (122)
63 PRK15209 long polar fimbrial p 47.0 64 0.0014 22.3 5.1 14 1-14 1-14 (174)
64 KOG4063 Major epididymal secre 44.1 58 0.0012 22.8 4.3 32 44-75 108-139 (158)
65 PRK15098 beta-D-glucoside gluc 44.0 75 0.0016 27.7 6.0 87 32-119 649-748 (765)
66 cd00915 MD-1_MD-2 MD-1 and MD- 43.1 40 0.00088 22.8 3.4 33 42-75 81-115 (130)
67 PF11912 DUF3430: Protein of u 43.0 20 0.00042 25.5 2.0 25 93-117 110-134 (212)
68 PF04234 CopC: CopC domain; I 41.4 30 0.00066 21.7 2.5 14 92-105 66-79 (97)
69 PRK15220 fimbrial chaperone pr 41.2 77 0.0017 22.1 4.8 12 1-12 1-12 (178)
70 PRK13031 preprotein translocas 40.0 50 0.0011 23.0 3.6 44 51-94 54-102 (149)
71 PRK10883 FtsI repressor; Provi 39.6 97 0.0021 25.3 5.7 24 90-117 115-139 (471)
72 COG5567 Predicted small peripl 39.4 39 0.00084 19.6 2.5 25 1-31 1-25 (58)
73 PRK09733 putative fimbrial pro 38.8 78 0.0017 22.0 4.6 16 33-48 27-43 (181)
74 PF13473 Cupredoxin_1: Cupredo 38.6 27 0.00058 22.0 2.0 27 32-58 23-51 (104)
75 PF02115 Rho_GDI: RHO protein 38.5 67 0.0015 23.4 4.2 71 46-119 103-176 (200)
76 PF11771 DUF3314: Protein of u 38.5 89 0.0019 21.9 4.5 82 19-101 32-141 (164)
77 PF11153 DUF2931: Protein of u 38.1 75 0.0016 22.9 4.5 41 1-42 1-50 (216)
78 TIGR01655 yxeA_fam conserved h 37.9 52 0.0011 21.5 3.3 38 1-38 1-39 (114)
79 PRK13159 cytochrome c-type bio 37.6 9.4 0.0002 26.7 -0.3 15 64-78 78-92 (155)
80 KOG3780 Thioredoxin binding pr 37.5 28 0.00062 27.4 2.3 20 95-114 102-121 (427)
81 PF08138 Sex_peptide: Sex pept 37.5 11 0.00024 21.7 -0.0 22 1-23 1-22 (56)
82 PF11777 DUF3316: Protein of u 37.4 32 0.00069 22.4 2.2 9 1-9 1-9 (114)
83 KOG1903 Cell cycle-associated 37.4 21 0.00045 25.5 1.4 31 75-105 69-102 (217)
84 TIGR02052 MerP mercuric transp 37.3 26 0.00056 20.3 1.7 15 1-15 1-15 (92)
85 PF15240 Pro-rich: Proline-ric 36.2 31 0.00066 24.8 2.1 10 11-20 9-18 (179)
86 PF07495 Y_Y_Y: Y_Y_Y domain; 35.9 33 0.00071 19.4 1.9 15 94-108 35-49 (66)
87 PLN03161 Probable xyloglucan e 35.4 2.1E+02 0.0045 22.1 7.2 16 1-16 1-16 (291)
88 PRK09934 fimbrial-like adhesin 33.3 1.1E+02 0.0024 21.1 4.6 9 1-9 1-9 (171)
89 COG5294 Uncharacterized protei 33.1 88 0.0019 20.7 3.7 14 1-14 1-14 (113)
90 KOG3205 Rho GDP-dissociation i 33.0 1.2E+02 0.0025 22.1 4.6 38 46-83 101-139 (200)
91 PRK15187 fimbrial protein BcfA 32.0 1.3E+02 0.0029 21.0 4.9 15 1-15 1-15 (180)
92 PF07437 YfaZ: YfaZ precursor; 31.5 41 0.00089 23.9 2.1 23 1-23 1-24 (180)
93 PF10913 DUF2706: Protein of u 31.3 56 0.0012 18.7 2.2 12 37-49 41-52 (60)
94 PRK10386 curli assembly protei 31.2 1.4E+02 0.0031 20.2 4.6 70 1-78 1-81 (130)
95 PRK10301 hypothetical protein; 30.6 54 0.0012 21.8 2.5 15 105-119 89-103 (124)
96 PRK09619 flgD flagellar basal 30.1 2E+02 0.0044 21.1 5.6 14 93-106 158-171 (218)
97 cd00239 PapG_CBD PapG carbohyd 28.8 52 0.0011 23.5 2.2 18 102-119 132-149 (194)
98 PF14734 DUF4469: Domain of un 28.7 70 0.0015 20.7 2.7 16 104-119 66-81 (102)
99 PRK15300 fimbrial protein StiA 28.2 1.3E+02 0.0027 20.9 4.2 8 111-118 162-169 (179)
100 COG4588 AcfC Accessory coloniz 27.9 78 0.0017 23.6 3.1 29 1-29 1-29 (252)
101 PF07070 Spo0M: SpoOM protein; 27.9 2.5E+02 0.0054 20.7 6.4 71 42-114 20-102 (218)
102 PF11797 DUF3324: Protein of u 27.9 56 0.0012 22.0 2.2 14 94-107 102-115 (140)
103 PRK13733 conjugal transfer pro 27.6 83 0.0018 22.4 3.1 29 1-29 1-31 (171)
104 PF10989 DUF2808: Protein of u 27.5 2E+02 0.0043 19.4 5.2 24 94-117 115-138 (146)
105 TIGR03769 P_ac_wall_RPT actino 27.0 67 0.0015 17.1 2.0 13 96-108 11-23 (41)
106 PF03627 PapG_N: PapG carbohyd 26.9 76 0.0017 23.2 2.8 18 102-119 154-171 (226)
107 PF13956 Ibs_toxin: Toxin Ibs, 26.7 38 0.00082 15.1 0.8 6 11-16 10-15 (19)
108 PF04563 RNA_pol_Rpb2_1: RNA p 26.4 2.3E+02 0.005 20.1 5.3 71 30-101 35-135 (203)
109 PF07127 Nodulin_late: Late no 26.4 86 0.0019 17.5 2.5 8 22-29 26-33 (54)
110 PLN03160 uncharacterized prote 26.4 2.6E+02 0.0056 20.4 7.8 11 33-43 68-78 (219)
111 PRK15289 lpfA fimbrial protein 25.9 1.7E+02 0.0036 20.5 4.5 23 96-118 154-179 (190)
112 PF11033 ComJ: Competence prot 25.6 2E+02 0.0043 19.4 4.5 16 91-106 90-105 (125)
113 TIGR03516 ppisom_GldI peptidyl 25.3 55 0.0012 23.1 1.9 16 45-60 85-100 (177)
114 TIGR02738 TrbB type-F conjugat 25.0 57 0.0012 22.4 1.9 23 1-23 1-23 (153)
115 TIGR01653 lactococcin_972 bact 25.0 65 0.0014 20.5 2.0 16 1-16 1-16 (92)
116 CHL00132 psaF photosystem I su 24.6 86 0.0019 22.6 2.7 29 1-29 1-35 (185)
117 PF11106 YjbE: Exopolysacchari 24.2 75 0.0016 19.7 2.0 14 1-14 1-14 (80)
118 PRK10081 entericidin B membran 24.0 64 0.0014 18.1 1.6 7 1-7 2-8 (48)
119 PF03896 TRAP_alpha: Transloco 23.9 3.4E+02 0.0073 20.9 6.9 28 92-119 143-171 (285)
120 PF00630 Filamin: Filamin/ABP2 23.8 1.8E+02 0.0039 17.6 4.4 27 53-82 71-97 (101)
121 PF09099 Qn_am_d_aIII: Quinohe 23.2 1E+02 0.0022 19.1 2.6 21 39-59 5-25 (81)
122 smart00557 IG_FLMN Filamin-typ 23.0 1.7E+02 0.0038 17.8 3.7 8 94-101 64-71 (93)
123 TIGR03786 strep_pil_rpt strept 23.0 1.4E+02 0.0031 17.4 3.1 22 96-118 8-29 (64)
124 PRK15287 putative minor fimbri 22.8 2.6E+02 0.0056 19.1 4.9 13 44-56 34-46 (158)
125 TIGR01165 cbiN cobalt transpor 22.5 74 0.0016 20.3 1.9 14 1-14 3-16 (91)
126 PRK11627 hypothetical protein; 22.5 3E+02 0.0065 19.8 7.0 24 92-115 111-138 (192)
127 COG4808 Uncharacterized protei 22.5 88 0.0019 21.6 2.3 6 24-29 21-26 (152)
128 COG3656 Predicted periplasmic 22.5 84 0.0018 21.9 2.3 24 96-119 102-127 (172)
129 PF12988 DUF3872: Domain of un 21.7 2.2E+02 0.0047 19.6 4.1 45 23-70 18-68 (137)
130 PF13115 YtkA: YtkA-like 21.6 99 0.0021 18.4 2.3 65 45-120 16-84 (86)
131 PRK12450 foldase protein PrsA; 21.5 1E+02 0.0022 23.6 2.8 10 33-42 32-41 (309)
132 KOG4824 Apolipoprotein D/Lipoc 21.1 3.5E+02 0.0076 20.0 6.6 43 6-48 12-63 (224)
133 PF10614 CsgF: Type VIII secre 21.0 73 0.0016 22.0 1.7 14 1-14 1-14 (142)
134 PRK13254 cytochrome c-type bio 20.9 73 0.0016 22.0 1.8 12 67-78 80-91 (148)
135 PRK13861 type IV secretion sys 20.8 2.7E+02 0.0059 21.4 5.0 14 32-45 30-43 (292)
136 COG3470 Tpd Uncharacterized pr 20.8 3.2E+02 0.0069 19.4 6.5 35 33-67 40-82 (179)
137 PRK15190 fimbrial protein BcfE 20.1 2.2E+02 0.0048 19.8 4.2 25 94-118 144-171 (181)
No 1
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=165.87 Aligned_cols=103 Identities=44% Similarity=0.853 Sum_probs=99.4
Q ss_pred hccccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCCCCCCCC
Q 033390 17 STQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIA 96 (120)
Q Consensus 17 ~~~~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~ 96 (120)
...+..+.+|++...+.++|++|+++|+|+.||++++|++++...++|..|+..++++|+|+++.+++.|+||.++||++
T Consensus 21 i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVe 100 (153)
T KOG4680|consen 21 INGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSCPVE 100 (153)
T ss_pred ccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccCCcC
Confidence 66788999999988889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCcEEEEEEEecCCCCCCeeEEe
Q 033390 97 AGDFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 97 ~G~~~~~~s~~iP~~~P~g~y~~ 119 (120)
||.|....++.+|..+|||+|.+
T Consensus 101 pG~f~~~hsq~LPg~tPPG~Y~l 123 (153)
T KOG4680|consen 101 PGDFLVAHSQVLPGYTPPGSYVL 123 (153)
T ss_pred cCceeeeeeEeccCcCCCceEEE
Confidence 99999999999999999999986
No 2
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=99.96 E-value=7e-28 Score=161.98 Aligned_cols=98 Identities=35% Similarity=0.604 Sum_probs=92.4
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCC-----CCCCC
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEV-----SCPIA 96 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~-----~CPl~ 96 (120)
|++|+++.++.++|++|+++|||++||++++|+++|++++++++| ++++.+++++++++..+.|+|+.+ .||++
T Consensus 1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~ 80 (122)
T cd00917 1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE 80 (122)
T ss_pred CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence 899998876899999999999999999999999999999999998 899999999999998899999964 89999
Q ss_pred CCcEEEEEEEecCCCCCCeeEEeC
Q 033390 97 AGDFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 97 ~G~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
+|++.++.++.||+++|+|+|+++
T Consensus 81 ~G~~~~~~~~~ip~~~P~g~y~v~ 104 (122)
T cd00917 81 PGDKFLTKLVDLPGEIPPGKYTVS 104 (122)
T ss_pred CCcEEEEEEeeCCCCCCCceEEEE
Confidence 998889999999999999999974
No 3
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=99.91 E-value=2.4e-23 Score=138.63 Aligned_cols=95 Identities=34% Similarity=0.533 Sum_probs=87.2
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECe--EEecCCCCCCCCCC--CCCCCCC
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFG--VPVHQETRDVCEEV--SCPIAAG 98 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~g--i~~~~~~~dlC~~~--~CPl~~G 98 (120)
|++|+++ ..++.+|+++||+++||++++++++|+++++++++++++.++++| ++++..+.|+|+.. .||+++|
T Consensus 1 ~~~C~~~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G 77 (118)
T smart00737 1 FKDCGSN---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKG 77 (118)
T ss_pred CccCCCC---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCCCC
Confidence 7899974 679999999999999999999999999999999999999999998 56778889999975 8999999
Q ss_pred -cEEEEEEEecCCCCCCeeEEeC
Q 033390 99 -DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 99 -~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.|.++.++.||+.+|+|+|+++
T Consensus 78 ~~~~~~~~~~v~~~~P~~~~~v~ 100 (118)
T smart00737 78 ETVNYTNSLTVPGIFPPGKYTVK 100 (118)
T ss_pred eeEEEEEeeEccccCCCeEEEEE
Confidence 5789999999999999999873
No 4
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=99.87 E-value=6.3e-22 Score=133.69 Aligned_cols=101 Identities=30% Similarity=0.525 Sum_probs=86.7
Q ss_pred ccceeecCCCCCccEEEEEEEEe-CCCCCCCCceEEEEEE-EecceecCcEEEEEEEECe-EEecCC----CCCCCCC--
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKII-PDPVVTGKPATFNISA-VTGQAVYGGKVVINVAYFG-VPVHQE----TRDVCEE-- 90 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~-P~p~~~G~~~~i~~~~-~~~~~v~~g~~~v~~~~~g-i~~~~~----~~dlC~~-- 90 (120)
++.|++|+++.+..++|++++++ ||+++||++++++++| +..++.+.+++++.+.++| ++++.. ..|+|+.
T Consensus 1 ~v~~~~C~~~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~ 80 (134)
T PF02221_consen 1 AVNFKDCGDGKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLF 80 (134)
T ss_dssp EEEEEESSSCTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSC
T ss_pred CcEEEECCCcccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcc
Confidence 46899999766668999999999 8999999999999999 6666666668999999998 766544 3499994
Q ss_pred ---CCCCCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 91 ---VSCPIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 91 ---~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.+||+++| .|+|++++.||+.+|+|+|+++
T Consensus 81 ~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~ 114 (134)
T PF02221_consen 81 GNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQ 114 (134)
T ss_dssp CSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEE
T ss_pred cccccCccCCCcEEEEEEEEEcccceeeEEEEEE
Confidence 49999999 4699999999999999999874
No 5
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=99.86 E-value=3.7e-21 Score=129.82 Aligned_cols=94 Identities=19% Similarity=0.383 Sum_probs=83.9
Q ss_pred eeecCCCCCccEEEEEEEEeCC-----CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC--CCCCCCCC----
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPD-----PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCEEV---- 91 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~-----p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~--~~dlC~~~---- 91 (120)
|++|+++ ..++.+|+++|| +++||++++++++|++++++.++++++.++++|++++.. +.|+|+..
T Consensus 1 ~~~C~~~---~~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~ 77 (127)
T cd00912 1 LVDCSDN---SANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKP 77 (127)
T ss_pred CcccCCC---CCceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCccc
Confidence 7899976 346777888887 999999999999999999999999999999999887765 78999863
Q ss_pred -CCCCCCC-cEEEEEEEecCC-CCCCeeEEe
Q 033390 92 -SCPIAAG-DFVLSHTQTLPS-FTPPVRLLH 119 (120)
Q Consensus 92 -~CPl~~G-~~~~~~s~~iP~-~~P~g~y~~ 119 (120)
.||+++| +|+|+.++.||+ .+|++.|++
T Consensus 78 ~~CPl~~G~~~~~~~~~~v~~~~~P~~~~~v 108 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVNVPEFTIPTIEYQV 108 (127)
T ss_pred ccCCcCCCCEEEEEEEEecCcccCCCeeEEE
Confidence 8999999 899999999998 999999876
No 6
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=99.85 E-value=5e-21 Score=128.41 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=85.9
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEe--cCCCCCCCCCCCCCCCCC-c
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPV--HQETRDVCEEVSCPIAAG-D 99 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~--~~~~~dlC~~~~CPl~~G-~ 99 (120)
|++|+++....++|+.|+-.||.++||++++++++|+++++.++.++.+++.++|+++ +..+.|+|+.+.||+++| +
T Consensus 1 f~~Cg~~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~ 80 (120)
T cd00918 1 FKDCGKGEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQH 80 (120)
T ss_pred CeeCCCCCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcE
Confidence 6899987656777788888888999999999999999999999999999999999654 444789999899999999 7
Q ss_pred EEEEEEEecCCCCCCeeEEe
Q 033390 100 FVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 100 ~~~~~s~~iP~~~P~g~y~~ 119 (120)
|+|++++.|++.+|..++++
T Consensus 81 ~~y~~~~~V~~~~P~v~~~V 100 (120)
T cd00918 81 YDIKYTWNVPAILPKIKAVV 100 (120)
T ss_pred EEEEEeeeccccCCCeEEEE
Confidence 99999999999999988876
No 7
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=99.85 E-value=8.5e-21 Score=127.76 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=85.6
Q ss_pred eeecCCCC--CccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC--CCCCCCC--CCCCCC
Q 033390 23 VKYCDKKK--NYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCEE--VSCPIA 96 (120)
Q Consensus 23 ~~~C~~~~--~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~--~~dlC~~--~~CPl~ 96 (120)
|++|+++. ...++|++|+-.||+++||++++++++|++++++++.++.+.+.++|+++|.. +.|+|+. ..||++
T Consensus 1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~ 80 (123)
T cd00916 1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS 80 (123)
T ss_pred CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence 68999863 35667777777888999999999999999999999999999999999766654 7899987 899999
Q ss_pred CC-cEEEEEEEecCCCCCCeeEEe
Q 033390 97 AG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 97 ~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
+| .|+|++++.|++.+|.++|++
T Consensus 81 ~G~~~~y~~~~~v~~~~P~i~~~v 104 (123)
T cd00916 81 AGEDVTYTLSLPVLAPYPGISVTV 104 (123)
T ss_pred CCcEEEEEEeeeccccCCCeEEEE
Confidence 99 799999999999999999886
No 8
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=99.78 E-value=1.4e-18 Score=120.78 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=82.3
Q ss_pred ccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEEC--e--EEec------CC-CCCC
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYF--G--VPVH------QE-TRDV 87 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~--g--i~~~------~~-~~dl 87 (120)
+..|++|+++.+ .++|++++++|+|+++++++++++++++++++.++ ++.+.+... | +++| +. ..|+
T Consensus 2 ~fsW~nCg~~~d-p~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~d~ 80 (162)
T cd00258 2 GFSWSNCDGESL-PAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYDNA 80 (162)
T ss_pred CcccccCCCCCC-ceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCcccccch
Confidence 457999998755 99999999999999999999999999999999998 777777653 3 2443 22 5589
Q ss_pred CCCC---------------------CCCCCCCcEEEEEE-Eec-----CCCCCCeeEEeC
Q 033390 88 CEEV---------------------SCPIAAGDFVLSHT-QTL-----PSFTPPVRLLHT 120 (120)
Q Consensus 88 C~~~---------------------~CPl~~G~~~~~~s-~~i-----P~~~P~g~y~~~ 120 (120)
|+.+ +||+++|+|++..+ +.| |++++.|+|+++
T Consensus 81 C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~ 140 (162)
T cd00258 81 CDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRIT 140 (162)
T ss_pred hhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEE
Confidence 9853 69999999998665 355 899999999974
No 9
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=99.72 E-value=5.7e-17 Score=111.01 Aligned_cols=119 Identities=24% Similarity=0.384 Sum_probs=92.4
Q ss_pred CchhhHHHHHHHHHHhh----ccccceeecCCC--CCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEE
Q 033390 1 MDRQLMLFACFLLLVSS----TQAIGVKYCDKK--KNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVA 74 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~----~~~~~~~~C~~~--~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~ 74 (120)
|.-.+..+++++++++. +.+..+++|++. ....++|++|.-+||.++||+...|+++|..+++.++.+..++..
T Consensus 1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~ 80 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGI 80 (158)
T ss_pred CchHHHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeee
Confidence 44333444444444443 347899999875 335678888888889999999999999999999999998877777
Q ss_pred ECe-E--EecCCCCCCCCC------CCCCCCCC-cEEEEEEEecCCCCCCeeEEe
Q 033390 75 YFG-V--PVHQETRDVCEE------VSCPIAAG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 75 ~~g-i--~~~~~~~dlC~~------~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
.+| + |++....|+|-. ..||+++| .|+|..+++|-...|.+...+
T Consensus 81 ~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~i 135 (158)
T KOG4063|consen 81 TLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVII 135 (158)
T ss_pred ecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccCCceeEEE
Confidence 766 5 556667788874 48999999 699999999999999886543
No 10
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=99.63 E-value=3.2e-15 Score=101.17 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=80.6
Q ss_pred cceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC-CCCCCCC-----CCCC
Q 033390 21 IGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE-TRDVCEE-----VSCP 94 (120)
Q Consensus 21 ~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~-~~dlC~~-----~~CP 94 (120)
+.++.|+.- +..++++.||.++||++++++++|++++++.+..+.+.+..+|+++|.. +. +|+. +.||
T Consensus 11 ~~y~~cd~~-----~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~-~C~~g~~~~s~CP 84 (130)
T cd00915 11 FSYSSCDPM-----QDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEI-ICHGYLDKYSFCG 84 (130)
T ss_pred EEeeeCCch-----heeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcc-cccCCCcccccCC
Confidence 568889853 4479999999999999999999999999999999999999999777732 44 9995 6999
Q ss_pred CCCC-cEEEE--EEEecCCCCCCeeEEe
Q 033390 95 IAAG-DFVLS--HTQTLPSFTPPVRLLH 119 (120)
Q Consensus 95 l~~G-~~~~~--~s~~iP~~~P~g~y~~ 119 (120)
+++| +|+|+ +++.+.+ +|.|+|++
T Consensus 85 ~~kGet~~Y~~p~slpi~~-yP~~~y~V 111 (130)
T cd00915 85 ALKGETVYYVGPFSFKGIL-IPQGQYRC 111 (130)
T ss_pred ccCCceEEEeeeecccccc-cCCccEEE
Confidence 9999 79999 8888888 99999987
No 11
>PF14558 TRP_N: ML-like domain
Probab=98.79 E-value=4.6e-08 Score=67.24 Aligned_cols=96 Identities=21% Similarity=0.376 Sum_probs=72.1
Q ss_pred ccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCC---CCCCCC
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE---VSCPIA 96 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~---~~CPl~ 96 (120)
...|.+|.+++....+..++...|. .+++.+++.|..+..-..-++++.+.+.|.....+..|+|+. ..||+.
T Consensus 4 t~~f~~Cl~~s~~~~~~Fdv~~~~~----n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCPl~ 79 (141)
T PF14558_consen 4 TSSFSNCLDNSYFTASRFDVTYDPD----NRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCPLP 79 (141)
T ss_pred eCChhHcCCccccceEEEeEEEcCC----CCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccccc
Confidence 4679999987544445555555664 568999999996654332356788888999888999999995 489999
Q ss_pred CCcEEEEEEEec-C----CCCCCeeEEe
Q 033390 97 AGDFVLSHTQTL-P----SFTPPVRLLH 119 (120)
Q Consensus 97 ~G~~~~~~s~~i-P----~~~P~g~y~~ 119 (120)
||.+....++.+ | ..+|...|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ip~iay~~ 107 (141)
T PF14558_consen 80 PGFFAIASSQIIVPPSFTSQIPSIAYAF 107 (141)
T ss_pred ccccccccccccCCHHHhhcCCceeEEc
Confidence 998887777666 5 5788888875
No 12
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=97.02 E-value=0.0081 Score=42.38 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred ccceeecCCCCC------ccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEE--EEEEEC--e--EE--ecCCC
Q 033390 20 AIGVKYCDKKKN------YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVV--INVAYF--G--VP--VHQET 84 (120)
Q Consensus 20 ~~~~~~C~~~~~------~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~--v~~~~~--g--i~--~~~~~ 84 (120)
...|++|.++.+ ..+.+++++++.+ ++.++++.+.+..-+++-+ .+. +.+... | .| +-...
T Consensus 10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~d----~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~ 85 (164)
T smart00675 10 PDLYSPCTDAPPGNIGLREAFDISNLVVDMD----PDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT 85 (164)
T ss_pred ccccccCCCCCCCccchhhccchhheEEEEc----CCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence 346899998743 5578888888864 6678899988888898555 444 444332 2 23 33457
Q ss_pred CCCCCCC-----------------------CCCCCCCc-EEE-----EEEE-ecCCCCCCeeEEe
Q 033390 85 RDVCEEV-----------------------SCPIAAGD-FVL-----SHTQ-TLPSFTPPVRLLH 119 (120)
Q Consensus 85 ~dlC~~~-----------------------~CPl~~G~-~~~-----~~s~-~iP~~~P~g~y~~ 119 (120)
.|+|..+ .||-.||+ +.+ ...+ .++.....|+|++
T Consensus 86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~ 150 (164)
T smart00675 86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKA 150 (164)
T ss_pred cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEE
Confidence 7999942 69999993 332 2333 2455556688876
No 13
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=96.33 E-value=0.014 Score=38.69 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=50.4
Q ss_pred cEEEEEEEEeCC------CCCCCCceEEEEEEEecceecCcEEEEEEEE-CeEEecCCCCCCCCCCCCCCC-CCcEEEEE
Q 033390 33 AVTIQQVKIIPD------PVVTGKPATFNISAVTGQAVYGGKVVINVAY-FGVPVHQETRDVCEEVSCPIA-AGDFVLSH 104 (120)
Q Consensus 33 ~~~v~~v~i~P~------p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~-~gi~~~~~~~dlC~~~~CPl~-~G~~~~~~ 104 (120)
.++|.++++... .+..|+++.+.+++..++++....+.+.++- .|..+..... ......-+.. +|.++++.
T Consensus 12 ~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~ 90 (142)
T PF14524_consen 12 EARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTF 90 (142)
T ss_dssp SEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEE
T ss_pred CEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEE
Confidence 789999998873 4788999999999999999998776665543 3444332111 1111111222 56777666
Q ss_pred EEecCCCCCCeeEEeC
Q 033390 105 TQTLPSFTPPVRLLHT 120 (120)
Q Consensus 105 s~~iP~~~P~g~y~~~ 120 (120)
+++.+ +.+|.|.++
T Consensus 91 ~i~~~--L~~G~Y~i~ 104 (142)
T PF14524_consen 91 TIPKP--LNPGEYSIS 104 (142)
T ss_dssp EEE----B-SEEEEEE
T ss_pred EEcCc--cCCCeEEEE
Confidence 65555 777888763
No 14
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=96.27 E-value=0.056 Score=36.80 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=49.9
Q ss_pred CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCC-----CCCCCCCC--cEEEEEEEecCCCCCCeeE
Q 033390 45 PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAG--DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~-----~~CPl~~G--~~~~~~s~~iP~~~P~g~y 117 (120)
..+||++++|++..+.+..+.+-++++.-.+.+-. ......-|.. ..=.+.-| .|.+...+.||..+|+|.|
T Consensus 31 ~~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~Y 109 (132)
T PF15418_consen 31 VATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDY 109 (132)
T ss_pred EEecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcce
Confidence 48999999999999999988877777744433321 0011111221 01134444 7899999999999999999
Q ss_pred Ee
Q 033390 118 LH 119 (120)
Q Consensus 118 ~~ 119 (120)
.+
T Consensus 110 H~ 111 (132)
T PF15418_consen 110 HF 111 (132)
T ss_pred EE
Confidence 86
No 15
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=96.18 E-value=0.0072 Score=37.76 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=23.1
Q ss_pred CCCCCCCcEEEEE-E---EecCCCCCCeeEEeC
Q 033390 92 SCPIAAGDFVLSH-T---QTLPSFTPPVRLLHT 120 (120)
Q Consensus 92 ~CPl~~G~~~~~~-s---~~iP~~~P~g~y~~~ 120 (120)
.||+++|.|.+.. + ..+|..+|.|.|.++
T Consensus 41 ~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~ 73 (93)
T smart00697 41 TCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLN 73 (93)
T ss_pred CCCCcCCeEEEEeeEeCcccCCccCCCeeEEEE
Confidence 7999999877543 2 357999999999863
No 16
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects. Their function is unknown.
Probab=96.06 E-value=0.0095 Score=36.53 Aligned_cols=28 Identities=36% Similarity=0.702 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEEE-E---EecCCCCCCeeEEe
Q 033390 92 SCPIAAGDFVLSH-T---QTLPSFTPPVRLLH 119 (120)
Q Consensus 92 ~CPl~~G~~~~~~-s---~~iP~~~P~g~y~~ 119 (120)
.||+++|.|.+.- . -.+|+.+|.|.|.+
T Consensus 50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i 81 (81)
T PF06477_consen 50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI 81 (81)
T ss_pred CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence 7999999887652 3 45899999999975
No 17
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=95.38 E-value=0.18 Score=42.25 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEECe---EEecC--------CCCCCCCCCCCC
Q 033390 30 KNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAYFG---VPVHQ--------ETRDVCEEVSCP 94 (120)
Q Consensus 30 ~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~~g---i~~~~--------~~~dlC~~~~CP 94 (120)
..+.++|+..+++|+-.... .-.+.+.|.... ++..| ++.|.+.... ..+.+ ...|+=..+.||
T Consensus 28 ~~y~~~v~~~~~~pdg~~~~-~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcP 106 (596)
T PLN00044 28 AYYDWEVSYVSAAPLGGVKK-QEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCA 106 (596)
T ss_pred EEEEEEEEEEEEccCCCcee-eEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCC
Confidence 34788999999999731111 123444454332 34455 4566554321 11221 123432337899
Q ss_pred CCCC-cEEEEEEEecCCCCCCeeE
Q 033390 95 IAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 95 l~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|+|| +|+|++. ++. ..|.|
T Consensus 107 I~PG~sftY~F~--~~d--q~GT~ 126 (596)
T PLN00044 107 IPAGWNWTYQFQ--VKD--QVGSF 126 (596)
T ss_pred cCCCCcEEEEEE--eCC--CCcee
Confidence 9999 4555554 443 34544
No 18
>PLN02168 copper ion binding / pectinesterase
Probab=95.02 E-value=0.2 Score=41.57 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=36.4
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEE----------ECeEEecCC-CCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVA----------YFGVPVHQE-TRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~----------~~gi~~~~~-~~dlC~~~~CPl 95 (120)
.+.++|+..++.|+-..| -.+.+.|... -++..| ++.|.+. .-|+..+.. ..|+=-.+.|||
T Consensus 28 ~~~~~vt~~~~~pdG~~~---~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI 104 (545)
T PLN02168 28 SYQWVVSYSQRFILGGNK---QVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI 104 (545)
T ss_pred EEEEEEEEEEecCCCeEE---EEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC
Confidence 367889999999973211 1123333321 123334 3444443 233333222 124322278999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| .|+|+++
T Consensus 105 ~PG~sftY~F~ 115 (545)
T PLN02168 105 LPGTNWTYRFQ 115 (545)
T ss_pred CCCCcEEEEEE
Confidence 999 4665554
No 19
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.43 E-value=0.35 Score=29.92 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=47.2
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCCCCCCCCCC-cEEEEEEEecCCC
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAG-DFVLSHTQTLPSF 111 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP~~ 111 (120)
.+.| .+...|..+..|+++++.+...-........+.+.++.+|..+-.. .. =.|.+| ..+++++...+
T Consensus 3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~--~i-----~~L~~g~~~~v~~~~~~~-- 72 (101)
T PF07705_consen 3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTV--TI-----PSLAPGESETVTFTWTPP-- 72 (101)
T ss_dssp -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEE--EE-----SEB-TTEEEEEEEEEE-S--
T ss_pred CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccE--EE-----CCcCCCcEEEEEEEEEeC--
Confidence 4566 7888999999999999999887666666666777777777544111 11 356778 45666666666
Q ss_pred CCCeeEEe
Q 033390 112 TPPVRLLH 119 (120)
Q Consensus 112 ~P~g~y~~ 119 (120)
-+|.|++
T Consensus 73 -~~G~~~i 79 (101)
T PF07705_consen 73 -SPGSYTI 79 (101)
T ss_dssp -S-CEEEE
T ss_pred -CCCeEEE
Confidence 5577765
No 20
>PLN02991 oxidoreductase
Probab=94.35 E-value=0.33 Score=40.27 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEE----------CeEEec-CCCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAY----------FGVPVH-QETRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~----------~gi~~~-~~~~dlC~~~~CPl 95 (120)
.+.++|+...++|+-..| -.+.+.|.... ++..| ++.+.+.. -|+... ....|+=-.+.|||
T Consensus 30 ~~~~~vt~~~~~pdG~~r---~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI 106 (543)
T PLN02991 30 FFEWHVTYGNISPLGVAQ---QGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI 106 (543)
T ss_pred EEEEEEEEEEeCCCCEEE---EEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc
Confidence 367899999999973211 12333333221 23344 34444432 333322 22234433468999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| .|+|++.
T Consensus 107 ~PG~sftY~F~ 117 (543)
T PLN02991 107 PPGKNYTYALQ 117 (543)
T ss_pred CCCCcEEEEEE
Confidence 999 4665554
No 21
>PLN02354 copper ion binding / oxidoreductase
Probab=93.68 E-value=0.42 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=36.8
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----------eEEecC-CCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----------GVPVHQ-ETRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----------gi~~~~-~~~dlC~~~~CPl 95 (120)
.+.++|+..+++|+-..| -.+.+.|... -++..| ++.|.+... |+.... ...|+=-.+.|||
T Consensus 29 ~y~~~v~~~~~~pdG~~r---~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI 105 (552)
T PLN02354 29 FFTWNVTYGTASPLGVPQ---QVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPI 105 (552)
T ss_pred EEEEEEEEEEecCCCeEE---EEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCC
Confidence 367789999999974221 1222333221 223344 344444432 222211 1234322378999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| +|+|+++
T Consensus 106 ~PG~sf~Y~F~ 116 (552)
T PLN02354 106 PPGTNFTYHFQ 116 (552)
T ss_pred CCCCcEEEEEE
Confidence 999 5666655
No 22
>PLN02835 oxidoreductase
Probab=93.53 E-value=0.72 Score=38.24 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=40.7
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEE----------CeEEecCC-CCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAY----------FGVPVHQE-TRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~----------~gi~~~~~-~~dlC~~~~CPl 95 (120)
.+.++|+...++|+-..| -.+.+.|... -.+..| ++.+.+.. -|+..+.. ..|+=-.+.||+
T Consensus 31 ~y~~~v~~~~~~~dg~~~---~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI 107 (539)
T PLN02835 31 YYTWTVTYGTISPLGVPQ---QVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI 107 (539)
T ss_pred EEEEEEEEEEeccCCeEE---EEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC
Confidence 367889999999863111 1233333322 223344 34444443 33333321 234322368999
Q ss_pred CCC-cEEEEEEEecCCCCCCeeE
Q 033390 96 AAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 96 ~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
+|| +|+|++. ++. ++|.|
T Consensus 108 ~PG~sf~Y~F~--~~~--q~GT~ 126 (539)
T PLN02835 108 PPNSNYTYKFQ--TKD--QIGTF 126 (539)
T ss_pred CCCCcEEEEEE--ECC--CCEeE
Confidence 999 4555554 443 35665
No 23
>PLN02792 oxidoreductase
Probab=91.95 E-value=0.79 Score=37.99 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred ccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEE----------CeEEecCC-CCCCCCCCCCCCC
Q 033390 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAY----------FGVPVHQE-TRDVCEEVSCPIA 96 (120)
Q Consensus 32 ~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~----------~gi~~~~~-~~dlC~~~~CPl~ 96 (120)
+.++|+...++|+-..| -.+.+.|.... ++..| ++.|.+.. -|+..+.. ..|+=-.+.|||+
T Consensus 19 ~~~~vt~~~~~pdg~~~---~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~ 95 (536)
T PLN02792 19 YNWRVTYGNISLLTLPR---RGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIP 95 (536)
T ss_pred EEEEEEEEEeCCCCeEE---EEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccC
Confidence 57788999999862111 12233333221 23334 34444443 24333322 2344333689999
Q ss_pred CC-cEEEEEE
Q 033390 97 AG-DFVLSHT 105 (120)
Q Consensus 97 ~G-~~~~~~s 105 (120)
|| +|+|+++
T Consensus 96 PG~sftY~F~ 105 (536)
T PLN02792 96 PGKNYTYDFQ 105 (536)
T ss_pred CCCcEEEEEE
Confidence 99 4555554
No 24
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=91.45 E-value=0.26 Score=29.90 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCCCceEEEEEEEecce--ecCcEEEEEEEECeEEecCCCCCCCCCCCCCCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 47 VTGKPATFNISAVTGQA--VYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 47 ~~G~~~~i~~~~~~~~~--v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.+|+.+++.+..+-+.. +.+.++.+.+= .|..+. .+. .... .|++| .-++++++.+|..+++|.|.++
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P-~GW~~~---~~~-~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLP-EGWTVS---ASP-ASVP-SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE------EE-EEE---B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCC-CCcccc---CCc-cccc-cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 46888888887765543 22333333220 121100 000 0123 78999 6789999999999999999874
No 25
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=90.75 E-value=0.67 Score=30.72 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEec---------C-CCCCCCCCCCCCCC--CCcEEEEEEEecCCCC
Q 033390 45 PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVH---------Q-ETRDVCEEVSCPIA--AGDFVLSHTQTLPSFT 112 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~---------~-~~~dlC~~~~CPl~--~G~~~~~~s~~iP~~~ 112 (120)
.++|||.+.+.+.+.-..+-....+.+....|-.|-. . ...+.=.+ ..=+. .|. .++.++..|..+
T Consensus 28 VVRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~~-~~tv~V~spa~A 105 (118)
T PF00868_consen 28 VVRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDGN-SVTVSVTSPANA 105 (118)
T ss_dssp EEETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEETT-EEEEEEE--TTS
T ss_pred EEECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCCC-EEEEEEECCCCC
Confidence 3789999999988875522223357777777732211 1 11111111 00000 111 467778899999
Q ss_pred CCeeEEeC
Q 033390 113 PPVRLLHT 120 (120)
Q Consensus 113 P~g~y~~~ 120 (120)
|-|+|.++
T Consensus 106 ~VG~y~l~ 113 (118)
T PF00868_consen 106 PVGRYKLS 113 (118)
T ss_dssp --EEEEEE
T ss_pred ceEEEEEE
Confidence 99999863
No 26
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.87 E-value=5.4 Score=28.26 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=42.9
Q ss_pred eecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeE--EecCCCCCCCCCCCCCCCCCcEE
Q 033390 24 KYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGV--PVHQETRDVCEEVSCPIAAGDFV 101 (120)
Q Consensus 24 ~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi--~~~~~~~dlC~~~~CPl~~G~~~ 101 (120)
+.|.++ . ++.-..+--......+..+-++|+++=+=....+.+.+.++|. |+-..... |+|+
T Consensus 18 ~~C~~P---~--v~~ssytT~Da~i~t~~afi~EFsl~C~n~~~~~~LyAeV~Gk~~PVar~~~~-----------nkYQ 81 (167)
T PF05404_consen 18 ETCENP---E--VTSSSYTTTDATISTQTAFIAEFSLKCSNGAKNISLYAEVNGKILPVARSGDT-----------NKYQ 81 (167)
T ss_pred cccCCC---c--eeeeeeecCCceeEeeeEEEEEEEEEeCCCCcCccEEEEECCEEEEEEEcCCC-----------CceE
Confidence 569876 2 3333343333444556777777777654211235677777774 43332111 4565
Q ss_pred EEEEEecCCCCCCeeEEe
Q 033390 102 LSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 102 ~~~s~~iP~~~P~g~y~~ 119 (120)
.+-+.+ -+.+++|.|.|
T Consensus 82 VSW~~e-~k~a~sG~y~V 98 (167)
T PF05404_consen 82 VSWTEE-HKKASSGTYEV 98 (167)
T ss_pred EEEEec-hhhccCCceEE
Confidence 544433 35678888876
No 27
>PLN02604 oxidoreductase
Probab=89.39 E-value=9.3 Score=31.90 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=42.1
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEECe----EEecCC--C------CCCCC-CCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYFG----VPVHQE--T------RDVCE-EVSC 93 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~g----i~~~~~--~------~dlC~-~~~C 93 (120)
.+.++|+...++|+-..| -.+.+.|... -.+..| .+.+.+.... ..+..+ . .|+=. .+.|
T Consensus 26 ~y~~~vt~~~~~pdG~~r---~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~ 102 (566)
T PLN02604 26 RYKWEVKYEYKSPDCFKK---LVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQC 102 (566)
T ss_pred EEEEEEEEEEECCCCcee---eEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccC
Confidence 368899999999984222 1234444332 234555 4555555431 122221 1 13211 1589
Q ss_pred CCCCC-cEEEEEEEecCCCCCCeeE
Q 033390 94 PIAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 94 Pl~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|++|| +|+|.+. ++ ++|.|
T Consensus 103 ~i~pg~s~~y~f~--~~---~~Gt~ 122 (566)
T PLN02604 103 PILPGETFTYEFV--VD---RPGTY 122 (566)
T ss_pred ccCCCCeEEEEEE--cC---CCEEE
Confidence 99999 4555554 43 56765
No 28
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=89.08 E-value=0.68 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=16.6
Q ss_pred CCCCCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 90 EVSCPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 90 ~~~CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
...||+.||. ++++.+.++. ++|.|
T Consensus 69 ~~~~~i~pG~-~~~Y~~~~~~--~~Gt~ 93 (117)
T PF07732_consen 69 VTQCPIAPGE-SFTYEFTANQ--QAGTY 93 (117)
T ss_dssp TSGSSBSTTE-EEEEEEEESS--CSEEE
T ss_pred ccceeEEeec-ceeeeEeeec--cccce
Confidence 3689999995 4444455555 67765
No 29
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=88.37 E-value=1.2 Score=31.06 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=48.4
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCCCCCCCCCcEEEEEEEecCC-
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPS- 110 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~- 110 (120)
.+++++|++..+|-.--.++.++++|...+.+.+. .+++ ++.|...--..+.-|-...--|++.|...|.++..-|.
T Consensus 3 ~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWki-iYVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd~ 81 (154)
T PF04729_consen 3 RVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKI-IYVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPDP 81 (154)
T ss_dssp SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEE-EEESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----G
T ss_pred eEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEE-EEEecccccCCcEEEeeEEECCCcceeEEEEEEccCCCh
Confidence 57899999999988888999999999999998876 4544 23333211111112222235799999777777665553
Q ss_pred -CCCC
Q 033390 111 -FTPP 114 (120)
Q Consensus 111 -~~P~ 114 (120)
.+|.
T Consensus 82 ~~Ip~ 86 (154)
T PF04729_consen 82 SKIPP 86 (154)
T ss_dssp GGSSC
T ss_pred hhCCh
Confidence 4554
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=87.28 E-value=3.7 Score=34.03 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=37.6
Q ss_pred CCccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----eEEecCC--------CCCC-CCCCC
Q 033390 30 KNYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----GVPVHQE--------TRDV-CEEVS 92 (120)
Q Consensus 30 ~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----gi~~~~~--------~~dl-C~~~~ 92 (120)
.++.++|+...++|+-..| -.+.+.|... -.+..| .+.|.+... ...+..+ ..|+ -..+.
T Consensus 9 ~~~~l~v~~~~~~~~g~~r---~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQ 85 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSR---YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQ 85 (538)
T ss_pred ccEEEEEEEeEeccCCeEE---EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccccc
Confidence 4578899999999873222 1233333322 223444 345554432 1122221 1222 22368
Q ss_pred CCCCCC-cEEEEEE
Q 033390 93 CPIAAG-DFVLSHT 105 (120)
Q Consensus 93 CPl~~G-~~~~~~s 105 (120)
||++|| +|+|.+.
T Consensus 86 cpI~PG~sf~Y~f~ 99 (538)
T TIGR03390 86 WPIPPGHFFDYEIK 99 (538)
T ss_pred CCCCCCCcEEEEEE
Confidence 999999 5665554
No 31
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.36 E-value=4.3 Score=34.04 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=13.9
Q ss_pred CCCCCC-CCCCCCCCc-EEEEEE
Q 033390 85 RDVCEE-VSCPIAAGD-FVLSHT 105 (120)
Q Consensus 85 ~dlC~~-~~CPl~~G~-~~~~~s 105 (120)
.|+ .. +.|||+||+ |+|.++
T Consensus 96 ~DG-~~~TqCPI~Pg~~~tY~F~ 117 (563)
T KOG1263|consen 96 QDG-VYITQCPIQPGENFTYRFT 117 (563)
T ss_pred ccC-CccccCCcCCCCeEEEEEE
Confidence 377 43 799999994 555444
No 32
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=85.61 E-value=5.4 Score=32.99 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.5
Q ss_pred ccEEEEEEEEeCC
Q 033390 32 YAVTIQQVKIIPD 44 (120)
Q Consensus 32 ~~~~v~~v~i~P~ 44 (120)
+.++|+..+++|+
T Consensus 6 y~~~it~~~~~pd 18 (539)
T TIGR03389 6 YTFDVQEKNVTRL 18 (539)
T ss_pred EEEEEEEEEeccC
Confidence 5678888888887
No 33
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=84.93 E-value=2.3 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.9
Q ss_pred eCCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
.+||+++|+.++.+.+..+......|+.++++++
T Consensus 84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l 117 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKL 117 (134)
T ss_dssp TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEEcccceeeEEEEEEEEE
Confidence 4899999999999999999998888977666554
No 34
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=82.89 E-value=2.8 Score=27.68 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCC-cEEEEEEEecCCCCCCeeEEe
Q 033390 84 TRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 84 ~~dlC~~~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
+...|+..+||+..| +++++.++.....+..++.++
T Consensus 15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v 51 (127)
T cd00912 15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDL 51 (127)
T ss_pred EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEE
Confidence 347898889999999 788888888887777665443
No 35
>PLN02191 L-ascorbate oxidase
Probab=82.63 E-value=10 Score=31.71 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred ccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----eEEecCC--------CCCCCC-CCCCC
Q 033390 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----GVPVHQE--------TRDVCE-EVSCP 94 (120)
Q Consensus 32 ~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----gi~~~~~--------~~dlC~-~~~CP 94 (120)
+.++|+...++|+-..| + .+.+.+... -.+..| .+.+.+... +..+..+ ..|+=. .+.||
T Consensus 26 ~~~~vt~~~~~pdG~~~-~--v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~p 102 (574)
T PLN02191 26 YTWEVEYKYWWPDCKEG-A--VMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCA 102 (574)
T ss_pred EEEEEEEEEeccCCcee-e--EEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCC
Confidence 57889999999985332 2 233333322 234445 345554432 1122221 123222 25799
Q ss_pred CCCC-cEEEEEEEecCCCCCCeeE
Q 033390 95 IAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 95 l~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
++|| +|+|.+. ++ .+|.|
T Consensus 103 I~PG~s~~Y~f~--~~---~~GT~ 121 (574)
T PLN02191 103 INPGETFTYKFT--VE---KPGTH 121 (574)
T ss_pred cCCCCeEEEEEE--CC---CCeEE
Confidence 9999 4555554 44 35665
No 36
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=81.19 E-value=3.9 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.0
Q ss_pred eCCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
..||+++|+.++.+.++.+......|+.++.+.+
T Consensus 70 ~~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l 103 (118)
T smart00737 70 SKCPIEKGETVNYTNSLTVPGIFPPGKYTVKWEL 103 (118)
T ss_pred CCCCCCCCeeEEEEEeeEccccCCCeEEEEEEEE
Confidence 3799999999999999888888888877665554
No 37
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=80.05 E-value=3.2 Score=34.87 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=37.8
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEE----------ECeEEecCCCCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVA----------YFGVPVHQETRDVCEEVSCPIA 96 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~----------~~gi~~~~~~~dlC~~~~CPl~ 96 (120)
.+.+++...++.+.... .-.+.+++... -.+..| .+.+.+. .-|+.++.........+.||++
T Consensus 47 ~~~L~v~~~~~~~~G~~---~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 47 EFDLTIGETMVNFTGRA---RPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSFAGIA 123 (587)
T ss_pred eEEEEEEEEEEecCCeE---EEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCccccCCCcccccccC
Confidence 45677888777775211 11223333321 123334 2344332 2233333322223334579999
Q ss_pred CC-cEEEEEEEecCCCCCCeeE
Q 033390 97 AG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 97 ~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|| +|+|+++. + ++|.|
T Consensus 124 PG~s~~Y~f~~--~---~~GTy 140 (587)
T TIGR01480 124 PGETFTYRFPV--R---QSGTY 140 (587)
T ss_pred CCCeEEEEEEC--C---CCeeE
Confidence 99 56665553 3 45665
No 38
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=79.92 E-value=4.4 Score=26.96 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCCCCCCCceEEEEEEEecceecCcEEEEEEEEC
Q 033390 43 PDPVVTGKPATFNISAVTGQAVYGGKVVINVAYF 76 (120)
Q Consensus 43 P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~ 76 (120)
-||++.|++++.+.+..........+++++..+.
T Consensus 72 ~CPl~~G~~~~y~~~~~V~~~~P~v~~~V~~~L~ 105 (120)
T cd00918 72 KCPIKKGQHYDIKYTWNVPAILPKIKAVVKAVLI 105 (120)
T ss_pred eCCCcCCcEEEEEEeeeccccCCCeEEEEEEEEE
Confidence 4999999999999998887766666666655543
No 39
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=78.56 E-value=3.9 Score=22.60 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=16.6
Q ss_pred CchhhHH-HHHHHHHHhhccccceeecCCC
Q 033390 1 MDRQLML-FACFLLLVSSTQAIGVKYCDKK 29 (120)
Q Consensus 1 m~~~~~l-~~~~~l~~~~~~~~~~~~C~~~ 29 (120)
||+++.+ ++++.++++..++...+|=+.+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~iRDvqGG 30 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYIRDVQGG 30 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcceecCCCc
Confidence 7744333 3333355566777777777655
No 40
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=78.18 E-value=9.3 Score=25.16 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=25.5
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecc-eecCc-EEEEE
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQ-AVYGG-KVVIN 72 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~-~v~~g-~~~v~ 72 (120)
.++|++.+++ +.|+.+.++++..++. ++.+. .+.++
T Consensus 29 ~i~v~~~~~~----~~gd~L~V~m~idl~~l~v~s~~~l~lt 66 (115)
T PF12984_consen 29 QIKVTNVSVE----KQGDSLHVDMDIDLSGLKVKSNRSLILT 66 (115)
T ss_pred cEEEEeeEEE----EECCEEEEEEEEEecccccCCCCEEEEE
Confidence 6778888877 5699999999888764 45555 34443
No 41
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=77.66 E-value=1.4 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=11.5
Q ss_pred CCCCCCCcEEEEEEEecCCCCCC
Q 033390 92 SCPIAAGDFVLSHTQTLPSFTPP 114 (120)
Q Consensus 92 ~CPl~~G~~~~~~s~~iP~~~P~ 114 (120)
..-+++|+|+|.+++.+|..+|+
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~ 109 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPS 109 (149)
T ss_dssp -----C-TTEEEEEE---TTS--
T ss_pred eecccCCCEEEEEEEECCCCCCc
Confidence 46688999999999999999886
No 42
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=77.26 E-value=6 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=26.7
Q ss_pred eCCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
..||++.|+.++.+.++...+.....+++++..+
T Consensus 75 ~~CPl~~G~~~~y~~~~~v~~~~P~i~~~v~~~L 108 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLPVLAPYPGISVTVEWEL 108 (123)
T ss_pred CCCCCcCCcEEEEEEeeeccccCCCeEEEEEEEE
Confidence 5799999999999998888776666666665554
No 43
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=76.67 E-value=18 Score=27.01 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCC-C-CCCCCCCCCcEEEEEEEecC
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVC-E-EVSCPIAAGDFVLSHTQTLP 109 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC-~-~~~CPl~~G~~~~~~s~~iP 109 (120)
.++|.+|.+--+|-+=+.++.|.++|.--+.+..+ .+.+. +.|... +..+|-= + .+--|+..|.+.|.+...-|
T Consensus 3 ~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkli-YVGSa~--See~DQvLdsilVGPVP~G~~~FVf~AD~P 79 (250)
T KOG3265|consen 3 KVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKLI-YVGSAE--SEEYDQVLDSILVGPVPVGRHKFVFQADAP 79 (250)
T ss_pred eeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEEE-Eeeccc--cchhhhhhhheeeccccccceEEEEecCCC
Confidence 57899999999998889999999999988877776 55542 223222 1222211 1 24689999977776665544
Q ss_pred --CCCC
Q 033390 110 --SFTP 113 (120)
Q Consensus 110 --~~~P 113 (120)
..+|
T Consensus 80 d~~kIP 85 (250)
T KOG3265|consen 80 DPSKIP 85 (250)
T ss_pred CcccCc
Confidence 3455
No 44
>PRK10965 multicopper oxidase; Provisional
Probab=72.11 E-value=10 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=14.2
Q ss_pred CCCCCCCC-cEEEEEEEecCCCCCCeeE
Q 033390 91 VSCPIAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 91 ~~CPl~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
..||++|| +|+|.+ +++. ++|.|
T Consensus 116 pq~~I~PG~s~~Y~f--~~~q--~aGT~ 139 (523)
T PRK10965 116 PQGIIAPGGKRTVTF--TVDQ--PAATC 139 (523)
T ss_pred CCCCCCCCCEEEEEe--ccCC--CCceE
Confidence 37999999 455444 3432 45654
No 45
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=72.09 E-value=24 Score=26.33 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCCCCCCCCCcEEEEEEEecC
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLP 109 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP 109 (120)
.+++.++.+..+|-|-|.++.|.++|.--+.+..+ .+.+. +.|...--..+.-+=.-+--|++.|...|.++..-|
T Consensus 3 iv~llsi~VlnnpaKf~DPykFeitFeClE~lK~dlEwklt-Yvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP 79 (279)
T COG5137 3 IVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCDLEWKLT-YVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPP 79 (279)
T ss_pred eeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCCceEEEE-EeeccccccchhhhhheeeccccccceeEEeecCCC
Confidence 67899999999999999999999999987777666 34432 222233222222222224678888965555554444
No 46
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=65.71 E-value=41 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=14.8
Q ss_pred CCCCCCCC-cEEEEEEEecCCCCCCeeE
Q 033390 91 VSCPIAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 91 ~~CPl~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
+.||+.|| +|+|.+. ++ .+|.|
T Consensus 77 tq~~I~PG~s~~y~f~--~~---~~Gt~ 99 (541)
T TIGR03388 77 TQCAINPGETFIYNFV--VD---RPGTY 99 (541)
T ss_pred ccCCcCCCCEEEEEEE--cC---CCEEE
Confidence 58999999 4555554 43 35765
No 47
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=64.78 E-value=7.2 Score=24.26 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=30.2
Q ss_pred CCCCceEEEEEEEecc----eecCcEEEEEEEEC-eEEecCCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCCeeEEeC
Q 033390 47 VTGKPATFNISAVTGQ----AVYGGKVVINVAYF-GVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 47 ~~G~~~~i~~~~~~~~----~v~~g~~~v~~~~~-gi~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
++|+.+.+.+-..... ...+..+.+.+.-. |..+..... . =.-..|.++ .++.||+.++.|.|++.
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~---~---~~~~~G~~~--~~~~lp~~~~~G~y~i~ 82 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV---N---TTNENGIFS--GSFQLPDDAPLGTYTIR 82 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE---E---ETTCTTEEE--EEEE--SS---EEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe---e---eeCCCCEEE--EEEECCCCCCCEeEEEE
Confidence 4688888877543222 12233455555442 333322211 0 011345555 44779999999999873
No 48
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=63.01 E-value=7.2 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.2
Q ss_pred EEEEEEecCCCCCCeeEEeC
Q 033390 101 VLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 101 ~~~~s~~iP~~~P~g~y~~~ 120 (120)
-|..++.+|..+|.|.|+++
T Consensus 156 lFra~i~LPanvp~G~Y~v~ 175 (236)
T PF09608_consen 156 LFRARIPLPANVPPGDYTVR 175 (236)
T ss_pred eEEEEeEcCCCCCcceEEEE
Confidence 36688999999999999874
No 49
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=58.52 E-value=7.7 Score=18.78 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=4.2
Q ss_pred chhhHHHH
Q 033390 2 DRQLMLFA 9 (120)
Q Consensus 2 ~~~~~l~~ 9 (120)
|+++..++
T Consensus 8 Kkil~~l~ 15 (25)
T PF08139_consen 8 KKILFPLL 15 (25)
T ss_pred HHHHHHHH
Confidence 66644444
No 50
>PRK13792 lysozyme inhibitor; Provisional
Probab=57.67 E-value=24 Score=23.88 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=6.4
Q ss_pred CchhhHHHHHHH
Q 033390 1 MDRQLMLFACFL 12 (120)
Q Consensus 1 m~~~~~l~~~~~ 12 (120)
||+.+.++++.+
T Consensus 1 mk~~l~~ll~~~ 12 (127)
T PRK13792 1 MKKALWLLLAAV 12 (127)
T ss_pred ChhHHHHHHHHH
Confidence 886644444333
No 51
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=57.65 E-value=32 Score=20.47 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=19.4
Q ss_pred CCCCCCceEEEEEEEecceecCcEEEEE
Q 033390 45 PVVTGKPATFNISAVTGQAVYGGKVVIN 72 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g~~~v~ 72 (120)
.+.+|+..++++..+...+...|...+.
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 5788999999999999999999974433
No 52
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=57.52 E-value=15 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEEECeE----EecCCCCCCCCCCCCC
Q 033390 69 VVINVAYFGV----PVHQETRDVCEEVSCP 94 (120)
Q Consensus 69 ~~v~~~~~gi----~~~~~~~dlC~~~~CP 94 (120)
..+.+.++|+ .++.++.+.|-...||
T Consensus 76 F~~Ev~qaGvF~i~~i~~e~m~~~L~i~CP 105 (157)
T COG1952 76 FLCEVQQAGIFRIAGIPEEQMAHLLGIECP 105 (157)
T ss_pred EEEEEEEeeEEEEcCCCHHHhhhhhhccCc
Confidence 4778889884 5667778889888998
No 53
>PRK03757 hypothetical protein; Provisional
Probab=56.23 E-value=70 Score=22.71 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=34.1
Q ss_pred CchhhHHHHHHHHHH-h-hccccceeecCC--CCCccEEEEEEEEeCCCCCCCCceEEEEEEEecce-ecCcEEEEEEEE
Q 033390 1 MDRQLMLFACFLLLV-S-STQAIGVKYCDK--KKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQA-VYGGKVVINVAY 75 (120)
Q Consensus 1 m~~~~~l~~~~~l~~-~-~~~~~~~~~C~~--~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~-v~~g~~~v~~~~ 75 (120)
||+.++.+++.+.++ + .+.+..|.-=.+ .+.-.+++...-+++ .+|.==.++.+...+.+ ..++++++.+..
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~y~iD~~~~hS~v~F~v~h~g~s~---v~G~F~~~~G~i~~d~~~~~~~~v~v~i~~ 77 (191)
T PRK03757 1 MKKTLLGLALGSLLFSAGSAVAADYKIDTEGQHAFINFKISHLGYSW---LYGRFNDFDGTFSFDEKNPAASKVNVTINT 77 (191)
T ss_pred CchHHHHHHHHHHHhccccccCcceEECCCCCceEEEEEEEeeeeee---EEEEEeeeEEEEEECCCCcccCEEEEEEEc
Confidence 886544444333332 3 444556764221 222344555443332 23443334444444333 345566666665
Q ss_pred CeE
Q 033390 76 FGV 78 (120)
Q Consensus 76 ~gi 78 (120)
..+
T Consensus 78 ~Sv 80 (191)
T PRK03757 78 TSV 80 (191)
T ss_pred CeE
Confidence 554
No 54
>PRK09810 entericidin A; Provisional
Probab=55.51 E-value=11 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=8.6
Q ss_pred CchhhHHHHHHHHHHh
Q 033390 1 MDRQLMLFACFLLLVS 16 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~ 16 (120)
||+.+.++++.+++++
T Consensus 2 Mkk~~~l~~~~~~~L~ 17 (41)
T PRK09810 2 MKRLIVLVLLASTLLT 17 (41)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7766665554444433
No 55
>PRK10449 heat-inducible protein; Provisional
Probab=54.07 E-value=32 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=9.7
Q ss_pred CchhhHHHHHHHHHHh
Q 033390 1 MDRQLMLFACFLLLVS 16 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~ 16 (120)
||+.+.++++..++.+
T Consensus 1 mk~~~~~~~~~~~l~~ 16 (140)
T PRK10449 1 MKKVVALVALSLLMAG 16 (140)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 8977666554444444
No 56
>COG1470 Predicted membrane protein [Function unknown]
Probab=53.02 E-value=16 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCCCCc-EEEEEEEecCCCCCCeeEEeC
Q 033390 94 PIAAGD-FVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 94 Pl~~G~-~~~~~s~~iP~~~P~g~y~~~ 120 (120)
-++||. -+.+.+.++|+.+++|.|.++
T Consensus 437 sL~pge~~tV~ltI~vP~~a~aGdY~i~ 464 (513)
T COG1470 437 SLEPGESKTVSLTITVPEDAGAGDYRIT 464 (513)
T ss_pred ccCCCCcceEEEEEEcCCCCCCCcEEEE
Confidence 378884 568899999999999999875
No 57
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=51.49 E-value=14 Score=27.13 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=12.5
Q ss_pred EEEEecCCCCCCeeEEe
Q 033390 103 SHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 103 ~~s~~iP~~~P~g~y~~ 119 (120)
+.+++||+.+|+|.|-+
T Consensus 137 ~~~~~IP~~l~~G~YLl 153 (218)
T PF03443_consen 137 SWTFTIPKNLPPGQYLL 153 (218)
T ss_dssp EEEEE--TTBBSEEEEE
T ss_pred ceEEEeCCCCCCCCceE
Confidence 46677999999999975
No 58
>COG2353 Uncharacterized conserved protein [Function unknown]
Probab=51.42 E-value=71 Score=22.91 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=43.9
Q ss_pred hccccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecc-eecCcEEEEEEEECeEEecCCCCC
Q 033390 17 STQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQ-AVYGGKVVINVAYFGVPVHQETRD 86 (120)
Q Consensus 17 ~~~~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~-~v~~g~~~v~~~~~gi~~~~~~~d 86 (120)
.+.+..|.-+...+.-.|++..+.++- .+|.=-.++..+..+. +...+++++.+....+..-...+|
T Consensus 19 ~a~a~~y~lD~~hs~i~F~i~h~~~s~---v~G~F~~~~g~v~~d~~~~~~~~v~vtI~~~si~tg~~~rD 86 (192)
T COG2353 19 AAAAATYTLDPAHSSIVFEIDHLGVSK---VRGSFTKFDGTVDFDPADPEASKVDVTIDVASVDTGNAGRD 86 (192)
T ss_pred hhhcCCccccccccEEEEEEEEeeeee---EEEEEeccEEEEEeCcccccccEEEEEEcceeEeCCchhhh
Confidence 455678888887766678888888875 4576666666666665 445566676666555554444444
No 59
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=50.75 E-value=17 Score=27.62 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=16.2
Q ss_pred EEEEEecCCCCCCeeEEe
Q 033390 102 LSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 102 ~~~s~~iP~~~P~g~y~~ 119 (120)
|..++.+|..+|.|.|++
T Consensus 182 Fra~i~LPAnvp~G~Y~v 199 (261)
T TIGR02186 182 FRATLRLPANVPNGTHEV 199 (261)
T ss_pred EEEeeecCCCCCCceEEE
Confidence 667899999999999986
No 60
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=50.16 E-value=19 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCCCCc-EEEEEEEecCCCCCCeeEEe
Q 033390 93 CPIAAGD-FVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 93 CPl~~G~-~~~~~s~~iP~~~P~g~y~~ 119 (120)
=-++||+ .+|..+...+... +|.|++
T Consensus 54 ~~l~pGe~~~~~~~~~~~~~~-~G~Y~~ 80 (82)
T PF12690_consen 54 ETLEPGESLTYEETWDLKDLS-PGEYTL 80 (82)
T ss_dssp EEE-TT-EEEEEEEESS-----SEEEEE
T ss_pred EEECCCCEEEEEEEECCCCCC-CceEEE
Confidence 3578894 5566555544444 799986
No 61
>PRK02710 plastocyanin; Provisional
Probab=49.71 E-value=53 Score=21.42 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=8.3
Q ss_pred EEEeCC--CCCCCCceEE
Q 033390 39 VKIIPD--PVVTGKPATF 54 (120)
Q Consensus 39 v~i~P~--p~~~G~~~~i 54 (120)
...+|. .+++|+.+++
T Consensus 42 ~~F~P~~i~v~~Gd~V~~ 59 (119)
T PRK02710 42 LAFEPSTLTIKAGDTVKW 59 (119)
T ss_pred eEEeCCEEEEcCCCEEEE
Confidence 445554 2555776544
No 62
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=48.20 E-value=44 Score=21.89 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.8
Q ss_pred CCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 43 PDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 43 P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
.||+++|+.. +..+..+.+.+..|+.+++..+
T Consensus 76 ~CPi~~G~~~-~~~~~~ip~~~P~g~y~v~~~l 107 (122)
T cd00917 76 SCPIEPGDKF-LTKLVDLPGEIPPGKYTVSARA 107 (122)
T ss_pred cCCcCCCcEE-EEEEeeCCCCCCCceEEEEEEE
Confidence 6999999876 6667777777788876665544
No 63
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=46.96 E-value=64 Score=22.25 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=7.7
Q ss_pred CchhhHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLL 14 (120)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (120)
||+.++.++++++.
T Consensus 1 Mkk~~~~~~~~~~~ 14 (174)
T PRK15209 1 MKKVVFALSALALT 14 (174)
T ss_pred CchHHHHHHHHHHH
Confidence 88765544444433
No 64
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=44.14 E-value=58 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=24.3
Q ss_pred CCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 44 DPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 44 ~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
||+.+|++++...++-..+.-.+..+.+...+
T Consensus 108 CPl~age~ytY~~slpI~~~yP~v~v~iew~L 139 (158)
T KOG4063|consen 108 CPLSAGEDYTYLNSLPITENYPEVSVIIEWQL 139 (158)
T ss_pred CcccCCCceEEEEEeeccccCCceeEEEEEEE
Confidence 78999999999988888876666665555433
No 65
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=43.99 E-value=75 Score=27.67 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=46.5
Q ss_pred ccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeE--EecCCCCCCCCCCCCCCCCCc-EEEEEEEec
Q 033390 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGV--PVHQETRDVCEEVSCPIAAGD-FVLSHTQTL 108 (120)
Q Consensus 32 ~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi--~~~~~~~dlC~~~~CPl~~G~-~~~~~s~~i 108 (120)
+.|+.+++++++.....++.++++++-+-..+. .|+-.+++++..- .+......|+...+--++||+ -+.++++..
T Consensus 649 T~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~-~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~ 727 (765)
T PRK15098 649 TTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKR-EGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI 727 (765)
T ss_pred ccEEeeccEeccccccCCCeEEEEEEEEECCCC-CccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH
Confidence 566777777776544456667777766655553 3433334443321 122223356666556799994 333333221
Q ss_pred ----------CCCCCCeeEEe
Q 033390 109 ----------PSFTPPVRLLH 119 (120)
Q Consensus 109 ----------P~~~P~g~y~~ 119 (120)
...+++|.|.+
T Consensus 728 ~~L~~~d~~~~~~~e~G~y~v 748 (765)
T PRK15098 728 EALKFWNQQMKYVAEPGKFNV 748 (765)
T ss_pred HHhceECCCCcEEEeCceEEE
Confidence 12456777765
No 66
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=43.14 E-value=40 Score=22.83 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=24.9
Q ss_pred eCCCCCCCCceEEE--EEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFN--ISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~--~~~~~~~~v~~g~~~v~~~~ 75 (120)
+-||+++|++++.. .++-..+ ...++.++...+
T Consensus 81 s~CP~~kGet~~Y~~p~slpi~~-yP~~~y~V~weL 115 (130)
T cd00915 81 SFCGALKGETVYYVGPFSFKGIL-IPQGQYRCVAEL 115 (130)
T ss_pred ccCCccCCceEEEeeeecccccc-cCCccEEEEEEE
Confidence 67999999999999 6666666 777766555444
No 67
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=42.96 E-value=20 Score=25.47 Aligned_cols=25 Identities=4% Similarity=0.162 Sum_probs=15.0
Q ss_pred CCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 93 CPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 93 CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
+...+-.|.+..+..-+..+|+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~p~ip~ns~ 134 (212)
T PF11912_consen 110 SSYSPSNYYYISSCSDNPYIPSNSY 134 (212)
T ss_pred cccCCCCeEEEEEEecCCcCCCccE
Confidence 4455545666666555666777655
No 68
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=41.39 E-value=30 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=6.1
Q ss_pred CCCCCCCcEEEEEE
Q 033390 92 SCPIAAGDFVLSHT 105 (120)
Q Consensus 92 ~CPl~~G~~~~~~s 105 (120)
+-|+.+|.|+....
T Consensus 66 ~~~l~~G~YtV~wr 79 (97)
T PF04234_consen 66 PPPLPPGTYTVSWR 79 (97)
T ss_dssp SS---SEEEEEEEE
T ss_pred CCCCCCceEEEEEE
Confidence 44556666665554
No 69
>PRK15220 fimbrial chaperone protein; Provisional
Probab=41.24 E-value=77 Score=22.11 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=5.9
Q ss_pred CchhhHHHHHHH
Q 033390 1 MDRQLMLFACFL 12 (120)
Q Consensus 1 m~~~~~l~~~~~ 12 (120)
||+.++..++++
T Consensus 1 m~~~~~~~~~~~ 12 (178)
T PRK15220 1 MKRSLIAASVLS 12 (178)
T ss_pred CchHHHHHHHHH
Confidence 775544333333
No 70
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=40.04 E-value=50 Score=22.97 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=26.6
Q ss_pred ceEEEEEEEecceecCcEE-EEEEEECeE----EecCCCCCCCCCCCCC
Q 033390 51 PATFNISAVTGQAVYGGKV-VINVAYFGV----PVHQETRDVCEEVSCP 94 (120)
Q Consensus 51 ~~~i~~~~~~~~~v~~g~~-~v~~~~~gi----~~~~~~~dlC~~~~CP 94 (120)
...+..+.++.....+.++ .+.+.++|+ .++.+..+.+-...||
T Consensus 54 ~yEV~L~vtvta~~~~~t~FlvEv~qaGIF~i~nipee~~~~~L~i~CP 102 (149)
T PRK13031 54 TYETVLTLEVKVENDGMVAFEAEVKQAGIFTVANMQEAQIEHAKKAFCP 102 (149)
T ss_pred cEEEEEEEEEEEEeCCceEEEEEEeEeeEEEEcCCCHHHHHHHHhcCCc
Confidence 3455544444444445554 778899985 3555555556566887
No 71
>PRK10883 FtsI repressor; Provisional
Probab=39.60 E-value=97 Score=25.32 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=14.4
Q ss_pred CCCCCCCCC-cEEEEEEEecCCCCCCeeE
Q 033390 90 EVSCPIAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 90 ~~~CPl~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
...||+.|| +|+|.+ |..-++|.|
T Consensus 115 g~~~~I~PG~~~~y~f----~~~~~aGT~ 139 (471)
T PRK10883 115 GPARMMSPNADWAPVL----PIRQNAATC 139 (471)
T ss_pred CccccCCCCCeEEEEE----ecCCCceee
Confidence 357999999 555443 223356665
No 72
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=39.44 E-value=39 Score=19.59 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=15.6
Q ss_pred CchhhHHHHHHHHHHhhccccceeecCCCCC
Q 033390 1 MDRQLMLFACFLLLVSSTQAIGVKYCDKKKN 31 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~~~~ 31 (120)
||+.|.-++++..+++.+. ||-..+
T Consensus 1 mk~~~~s~~ala~l~sLA~------CG~KGP 25 (58)
T COG5567 1 MKNVFKSLLALATLFSLAG------CGLKGP 25 (58)
T ss_pred ChhHHHHHHHHHHHHHHHh------cccCCC
Confidence 7877777776666655333 665533
No 73
>PRK09733 putative fimbrial protein; Provisional
Probab=38.82 E-value=78 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=7.1
Q ss_pred cEEEEE-EEEeCCCCCC
Q 033390 33 AVTIQQ-VKIIPDPVVT 48 (120)
Q Consensus 33 ~~~v~~-v~i~P~p~~~ 48 (120)
.+++++ |.-.||.+..
T Consensus 27 ~i~f~G~I~~~tC~i~~ 43 (181)
T PRK09733 27 IVKFKGEVISAPCSIKP 43 (181)
T ss_pred EEEEEEEEEecceeecC
Confidence 444443 3344555443
No 74
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.59 E-value=27 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=14.5
Q ss_pred ccEEEEEEEEeCCC--CCCCCceEEEEEE
Q 033390 32 YAVTIQQVKIIPDP--VVTGKPATFNISA 58 (120)
Q Consensus 32 ~~~~v~~v~i~P~p--~~~G~~~~i~~~~ 58 (120)
..+++++-..+|.. +++|+++++.+.-
T Consensus 23 v~I~~~~~~f~P~~i~v~~G~~v~l~~~N 51 (104)
T PF13473_consen 23 VTITVTDFGFSPSTITVKAGQPVTLTFTN 51 (104)
T ss_dssp -------EEEES-EEEEETTCEEEEEEEE
T ss_pred ccccccCCeEecCEEEEcCCCeEEEEEEE
Confidence 35577778888864 7889988877643
No 75
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=38.53 E-value=67 Score=23.39 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=39.3
Q ss_pred CCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCCCCCCCCCcEEEEEE-EecCC-CCCCeeEEe
Q 033390 46 VVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHT-QTLPS-FTPPVRLLH 119 (120)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G~~~~~~s-~~iP~-~~P~g~y~~ 119 (120)
++.|....+.+.|.+++++-+| +..=.++-.|+++-....-+= .-.|= ...|++++. -+.|+ ++--|.|++
T Consensus 103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miG--sy~P~-~e~y~~~~p~eeaPsG~laRG~Y~a 176 (200)
T PF02115_consen 103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIG--SYAPQ-TEPYEKTFPEEEAPSGMLARGSYTA 176 (200)
T ss_dssp EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEE--EE--E-SSEEEEEEEEEE--BSTTT-EEEEE
T ss_pred ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeee--ccCCC-CcceEEeCcCccCCCceeEeeeeeE
Confidence 7789999999999999997676 666667888887644321111 12332 234665543 34454 444477765
No 76
>PF11771 DUF3314: Protein of unknown function (DUF3314) ; InterPro: IPR021748 This small family contains human, mouse and fish members but the function is not known.
Probab=38.49 E-value=89 Score=21.86 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=48.6
Q ss_pred cccceeecCCCCCccEEE---------EEEEEeCCCCCCCCc---eEEEEEEEecceecC--------c-E--EEE-EEE
Q 033390 19 QAIGVKYCDKKKNYAVTI---------QQVKIIPDPVVTGKP---ATFNISAVTGQAVYG--------G-K--VVI-NVA 74 (120)
Q Consensus 19 ~~~~~~~C~~~~~~~~~v---------~~v~i~P~p~~~G~~---~~i~~~~~~~~~v~~--------g-~--~~v-~~~ 74 (120)
....|+.|... ++...- =+|+..|.+-.+|+. -+.+.-|---+|+.+ + . ..+ .+.
T Consensus 32 ~vsiFRYC~pa-pYtA~~~p~LYKkMRWNve~~~~~~g~gq~~~~~~~eyYFLCy~Dt~~~a~~~~~~~a~s~~~~~rlW 110 (164)
T PF11771_consen 32 EVSIFRYCKPA-PYTASRFPRLYKKMRWNVERTPEPSGDGQDWDSSHTEYYFLCYRDTWEPADDTGQSPANSCPQIQRLW 110 (164)
T ss_pred EEEEEEecCCc-ccccccCcchhhheeeeeecCCCcccCCcccccccceEEEEEEccccccccccccCCcccCcceeEEE
Confidence 34578899653 322211 258888988889998 555665554454443 0 0 111 111
Q ss_pred -ECe-EEecC--CCCCCCCCCCCCCCCCcEE
Q 033390 75 -YFG-VPVHQ--ETRDVCEEVSCPIAAGDFV 101 (120)
Q Consensus 75 -~~g-i~~~~--~~~dlC~~~~CPl~~G~~~ 101 (120)
.|. +++-. .+.|+=+..-||.++|.|.
T Consensus 111 SIGrWv~~~Pd~~~dDl~sWiLC~~P~gdyq 141 (164)
T PF11771_consen 111 SIGRWVQLGPDPATDDLYSWILCPQPPGDYQ 141 (164)
T ss_pred EecceEEcCCCcCcccceeEEEcCCCccchh
Confidence 233 44443 4667777789999999876
No 77
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=38.08 E-value=75 Score=22.87 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHHHhhcc--------ccceeecCC-CCCccEEEEEEEEe
Q 033390 1 MDRQLMLFACFLLLVSSTQ--------AIGVKYCDK-KKNYAVTIQQVKII 42 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~--------~~~~~~C~~-~~~~~~~v~~v~i~ 42 (120)
||++++|++ ++++.+++. ...|+---. +..+.+.|+.+.+.
T Consensus 1 mk~i~~l~l-~lll~~C~~~~~~~~~~~~~W~~~~~~P~~ypv~V~~~~~~ 50 (216)
T PF11153_consen 1 MKKILLLLL-LLLLTGCSTNPNEPLQPYFEWRFGVAAPKHYPVWVTYAYFV 50 (216)
T ss_pred ChHHHHHHH-HHHHHhhcCCCccCCCCCCccEEEEecCCCCEEEEEEEEEE
Confidence 887755553 323334211 124444422 34578888888775
No 78
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=37.91 E-value=52 Score=21.54 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHHh-hccccceeecCCCCCccEEEEE
Q 033390 1 MDRQLMLFACFLLLVS-STQAIGVKYCDKKKNYAVTIQQ 38 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~-~~~~~~~~~C~~~~~~~~~v~~ 38 (120)
||+.++.++++++++. ......+..=++..++.++++.
T Consensus 1 mKK~li~li~~ivv~~~~~~~~~~~~~~~~~nyyvki~~ 39 (114)
T TIGR01655 1 MKKGLAILLALIVVITIVGIEISHPVYSDRFNYYIKIKN 39 (114)
T ss_pred CceehHHHHHHHHhHHHhhheeeccccCCccccEEEEee
Confidence 8866555444443332 2222223222332344666665
No 79
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.59 E-value=9.4 Score=26.73 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=9.6
Q ss_pred ecCcEEEEEEEECeE
Q 033390 64 VYGGKVVINVAYFGV 78 (120)
Q Consensus 64 v~~g~~~v~~~~~gi 78 (120)
++++...+.+.|.|+
T Consensus 78 vtD~~~~v~V~Y~Gi 92 (155)
T PRK13159 78 VIDKNAATQVEYTGI 92 (155)
T ss_pred EEcCCcEEEEEEccC
Confidence 345555667788774
No 80
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=37.52 E-value=28 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=18.7
Q ss_pred CCCCcEEEEEEEecCCCCCC
Q 033390 95 IAAGDFVLSHTQTLPSFTPP 114 (120)
Q Consensus 95 l~~G~~~~~~s~~iP~~~P~ 114 (120)
+.+|.|+|.+++.||..+|+
T Consensus 102 l~~G~~~~pF~~~LP~~~P~ 121 (427)
T KOG3780|consen 102 LPPGNYEFPFSFTLPLNLPP 121 (427)
T ss_pred cCCCceEEeEeccCCCCCCC
Confidence 88999999999999998887
No 81
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=37.52 E-value=11 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=0.4
Q ss_pred CchhhHHHHHHHHHHhhccccce
Q 033390 1 MDRQLMLFACFLLLVSSTQAIGV 23 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~ 23 (120)
||..++|+++++ ++..+....|
T Consensus 1 Mk~p~~llllvl-llGla~s~~w 22 (56)
T PF08138_consen 1 MKTPIFLLLLVL-LLGLAQSWEW 22 (56)
T ss_dssp ----------------------S
T ss_pred CcchHHHHHHHH-HHHHHhcccc
Confidence 776655555444 4444444333
No 82
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.44 E-value=32 Score=22.43 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.2
Q ss_pred CchhhHHHH
Q 033390 1 MDRQLMLFA 9 (120)
Q Consensus 1 m~~~~~l~~ 9 (120)
||+.+++++
T Consensus 1 MKk~~ll~~ 9 (114)
T PF11777_consen 1 MKKIILLAS 9 (114)
T ss_pred CchHHHHHH
Confidence 887766664
No 83
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.42 E-value=21 Score=25.49 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=21.1
Q ss_pred ECeEEe-cCCCCCCCCCCCCCCCCC--cEEEEEE
Q 033390 75 YFGVPV-HQETRDVCEEVSCPIAAG--DFVLSHT 105 (120)
Q Consensus 75 ~~gi~~-~~~~~dlC~~~~CPl~~G--~~~~~~s 105 (120)
++.+.+ +.-..+.|...+||+-.| .|+|.-.
T Consensus 69 FNRiNLiYGTise~Cte~sCP~MsGG~rYEY~Wq 102 (217)
T KOG1903|consen 69 FNRINLIYGTISEFCTETSCPVMSGGPRYEYRWQ 102 (217)
T ss_pred hhhhHhhhhhHhhhccccCCCcccCCCcceeEec
Confidence 344443 334569999999999988 5776544
No 84
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=37.34 E-value=26 Score=20.32 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.0
Q ss_pred CchhhHHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLLV 15 (120)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (120)
||.+..||+++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 887766666554443
No 85
>PF15240 Pro-rich: Proline-rich
Probab=36.25 E-value=31 Score=24.76 Aligned_cols=10 Identities=50% Similarity=0.504 Sum_probs=4.9
Q ss_pred HHHHHhhccc
Q 033390 11 FLLLVSSTQA 20 (120)
Q Consensus 11 ~~l~~~~~~~ 20 (120)
++|.|++|..
T Consensus 9 ALLALSSAQ~ 18 (179)
T PF15240_consen 9 ALLALSSAQS 18 (179)
T ss_pred HHHHhhhccc
Confidence 3444455554
No 86
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.87 E-value=33 Score=19.36 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=9.4
Q ss_pred CCCCCcEEEEEEEec
Q 033390 94 PIAAGDFVLSHTQTL 108 (120)
Q Consensus 94 Pl~~G~~~~~~s~~i 108 (120)
+++||+|++.....-
T Consensus 35 ~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 35 NLPPGKYTLEVRAKD 49 (66)
T ss_dssp S--SEEEEEEEEEEE
T ss_pred eCCCEEEEEEEEEEC
Confidence 678898888776543
No 87
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=35.37 E-value=2.1e+02 Score=22.11 Aligned_cols=16 Identities=13% Similarity=0.222 Sum_probs=9.7
Q ss_pred CchhhHHHHHHHHHHh
Q 033390 1 MDRQLMLFACFLLLVS 16 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~ 16 (120)
|+....|+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (291)
T PLN03161 1 MASLKTLLVALFAALA 16 (291)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 6766666665555554
No 88
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=33.32 E-value=1.1e+02 Score=21.15 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=5.0
Q ss_pred CchhhHHHH
Q 033390 1 MDRQLMLFA 9 (120)
Q Consensus 1 m~~~~~l~~ 9 (120)
|++.++..+
T Consensus 1 m~~~~~~~~ 9 (171)
T PRK09934 1 MRRVFFACF 9 (171)
T ss_pred ChhHHHHHH
Confidence 886644433
No 89
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.12 E-value=88 Score=20.73 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=8.9
Q ss_pred CchhhHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLL 14 (120)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (120)
||+++.+++++.+.
T Consensus 1 MKkil~~ilall~~ 14 (113)
T COG5294 1 MKKILIGILALLLI 14 (113)
T ss_pred CcchHHHHHHHHHH
Confidence 89876655555444
No 90
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=33.02 E-value=1.2e+02 Score=22.12 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCC
Q 033390 46 VVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQE 83 (120)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~ 83 (120)
++-|....+.+.|.+.++|-+| ...=+++-.|+.+-..
T Consensus 101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~ 139 (200)
T KOG3205|consen 101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKT 139 (200)
T ss_pred eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeeh
Confidence 7789999999999999999999 5544566677765443
No 91
>PRK15187 fimbrial protein BcfA; Provisional
Probab=32.04 E-value=1.3e+02 Score=20.97 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=8.2
Q ss_pred CchhhHHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLLV 15 (120)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (120)
||+.++++++..|++
T Consensus 1 mk~~~~~~~~~~~~~ 15 (180)
T PRK15187 1 MKKPVLALMVSAIAF 15 (180)
T ss_pred CchhhHHHHHHHHHH
Confidence 887755544444443
No 92
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=31.53 E-value=41 Score=23.94 Aligned_cols=23 Identities=48% Similarity=0.551 Sum_probs=12.5
Q ss_pred CchhhHHHHHHHHHHh-hccccce
Q 033390 1 MDRQLMLFACFLLLVS-STQAIGV 23 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~-~~~~~~~ 23 (120)
||+..+..++.+++++ .+.+..+
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~~~ 24 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAISL 24 (180)
T ss_pred CchHHHHHHHHHHHHhhhhheeec
Confidence 8877555544444444 4555544
No 93
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=31.32 E-value=56 Score=18.73 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=7.3
Q ss_pred EEEEEeCCCCCCC
Q 033390 37 QQVKIIPDPVVTG 49 (120)
Q Consensus 37 ~~v~i~P~p~~~G 49 (120)
.++++.|| ++|.
T Consensus 41 s~ls~npc-irrp 52 (60)
T PF10913_consen 41 SSLSVNPC-IRRP 52 (60)
T ss_pred cccccccc-cccc
Confidence 46777787 3443
No 94
>PRK10386 curli assembly protein CsgE; Provisional
Probab=31.20 E-value=1.4e+02 Score=20.23 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHHhhccccceeecCCCCCccEEEEEEEEeCCCCCCCCce----------EEEEEEEecceecCcE-E
Q 033390 1 MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPA----------TFNISAVTGQAVYGGK-V 69 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~----------~i~~~~~~~~~v~~g~-~ 69 (120)
|||.....++..|++++.... ..+..+|.++-+.-..=+.|+++ +....-+.++....+. .
T Consensus 1 ~~r~~~~~l~~~~l~~~~~~~--------a~~eiEi~GLIiD~T~Tr~G~DFY~~Fs~~~~~~~~~nltI~E~p~a~~GS 72 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGNLH--------AAVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESDYDGNLTINERPSARWGS 72 (130)
T ss_pred ChhHHHHHHHHHHHHhCcccc--------ccccccccceEeccccccccHhHHHHHHHHHhhhCCCcEEEEEEEcCCCCc
Confidence 887755555444444322110 01244555655554333334432 2233334445444442 3
Q ss_pred EEEEEECeE
Q 033390 70 VINVAYFGV 78 (120)
Q Consensus 70 ~v~~~~~gi 78 (120)
.+++.+++-
T Consensus 73 ~ItV~~n~~ 81 (130)
T PRK10386 73 WITITVNQD 81 (130)
T ss_pred EEEEEECCE
Confidence 555666653
No 95
>PRK10301 hypothetical protein; Provisional
Probab=30.58 E-value=54 Score=21.78 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=7.3
Q ss_pred EEecCCCCCCeeEEe
Q 033390 105 TQTLPSFTPPVRLLH 119 (120)
Q Consensus 105 s~~iP~~~P~g~y~~ 119 (120)
++.+|..+++|.|++
T Consensus 89 ~v~l~~~L~~G~YtV 103 (124)
T PRK10301 89 IVPLADSLKPGTYTV 103 (124)
T ss_pred EEECCCCCCCccEEE
Confidence 334444455555554
No 96
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=30.07 E-value=2e+02 Score=21.06 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.4
Q ss_pred CCCCCCcEEEEEEE
Q 033390 93 CPIAAGDFVLSHTQ 106 (120)
Q Consensus 93 CPl~~G~~~~~~s~ 106 (120)
-++++|.|+++.+.
T Consensus 158 ~~lp~G~Y~~~V~a 171 (218)
T PRK09619 158 LGLQPGQYQLSVVS 171 (218)
T ss_pred CCCCCceeEEEEEE
Confidence 35888988887763
No 97
>cd00239 PapG_CBD PapG carbohydrate / receptor binding domain (CBD); PapG, the adhesin of the P-pili, is situated at the tip, mediating the attachment of uropathogenic Escherichia coli to the uroepithelium of the human kidney; PapG has a two-domain architecture: a carbohydrate binding N-terminus (this domain) and chaperone binding C-terminus (C-terminal pilin region). The carbohydrate-binding domain interacts with the receptor glycan. There are 3 PapG alleles, class I-III, which bind to different receptor isotypes, GbO3, GbO4, and GbO5, respectively.
Probab=28.75 E-value=52 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.5
Q ss_pred EEEEEecCCCCCCeeEEe
Q 033390 102 LSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 102 ~~~s~~iP~~~P~g~y~~ 119 (120)
+++.+.+|.-+|.|+|++
T Consensus 132 l~f~~~lPvDLPkG~Y~f 149 (194)
T cd00239 132 LTFNVLLPVDLPKGDYTF 149 (194)
T ss_pred EEEEEEccccCCCCceee
Confidence 567788999999999986
No 98
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=28.71 E-value=70 Score=20.65 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=12.1
Q ss_pred EEEecCCCCCCeeEEe
Q 033390 104 HTQTLPSFTPPVRLLH 119 (120)
Q Consensus 104 ~s~~iP~~~P~g~y~~ 119 (120)
..+.||..++.|.|++
T Consensus 66 l~~~lPa~L~~G~Y~l 81 (102)
T PF14734_consen 66 LIFILPADLAAGEYTL 81 (102)
T ss_pred EEEECcCccCceEEEE
Confidence 4466888888888876
No 99
>PRK15300 fimbrial protein StiA; Provisional
Probab=28.25 E-value=1.3e+02 Score=20.92 Aligned_cols=8 Identities=0% Similarity=-0.400 Sum_probs=4.0
Q ss_pred CCCCeeEE
Q 033390 111 FTPPVRLL 118 (120)
Q Consensus 111 ~~P~g~y~ 118 (120)
.+.+|.++
T Consensus 162 ~vt~G~~~ 169 (179)
T PRK15300 162 PVKSGTVD 169 (179)
T ss_pred CCCceeee
Confidence 35555543
No 100
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=27.94 E-value=78 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=16.9
Q ss_pred CchhhHHHHHHHHHHhhccccceeecCCC
Q 033390 1 MDRQLMLFACFLLLVSSTQAIGVKYCDKK 29 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~~ 29 (120)
|++..+++++.+|.++++.....+--|-+
T Consensus 1 Mk~~~~i~~~~~La~s~~~~adinlYGpG 29 (252)
T COG4588 1 MKKAVLILLIFLLAFSSAANADINLYGPG 29 (252)
T ss_pred CchhHHHHHHHHHHhhhhhcceEEEecCC
Confidence 88777777666677663333334444443
No 101
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=27.93 E-value=2.5e+02 Score=20.68 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=38.8
Q ss_pred eCCCCCCCCceEEEEE---EEecceecCcEEEEEEEE----CeE----EecCCCCCCCCCCCCCCCCC-cEEEEEEEecC
Q 033390 42 IPDPVVTGKPATFNIS---AVTGQAVYGGKVVINVAY----FGV----PVHQETRDVCEEVSCPIAAG-DFVLSHTQTLP 109 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~---~~~~~~v~~g~~~v~~~~----~gi----~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP 109 (120)
......+|+.++-.+. |...++|+.-.+.+...+ ++- ...-....+++ +.-++|| +.++.+++.||
T Consensus 20 ~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~--~f~I~~ge~~~iPF~~~lP 97 (218)
T PF07070_consen 20 EKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSG--PFTIEPGEEKEIPFSFPLP 97 (218)
T ss_pred CCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCC--CEEECCCCEEEEeEEEECC
Confidence 3345677887665543 345666666554443332 110 00011111222 4678899 57788888899
Q ss_pred CCCCC
Q 033390 110 SFTPP 114 (120)
Q Consensus 110 ~~~P~ 114 (120)
..+|.
T Consensus 98 ~etPi 102 (218)
T PF07070_consen 98 WETPI 102 (218)
T ss_pred CCCCc
Confidence 88875
No 102
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=27.87 E-value=56 Score=22.02 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.8
Q ss_pred CCCCCcEEEEEEEe
Q 033390 94 PIAAGDFVLSHTQT 107 (120)
Q Consensus 94 Pl~~G~~~~~~s~~ 107 (120)
+++||+|++..++.
T Consensus 102 ~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 102 KLKPGKYTLKITAK 115 (140)
T ss_pred CccCCEEEEEEEEE
Confidence 89999999887755
No 103
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=27.63 E-value=83 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=15.7
Q ss_pred CchhhHHHHHHH-HHHh-hccccceeecCCC
Q 033390 1 MDRQLMLFACFL-LLVS-STQAIGVKYCDKK 29 (120)
Q Consensus 1 m~~~~~l~~~~~-l~~~-~~~~~~~~~C~~~ 29 (120)
||++..|+++.. |++. .|+...-.+|+..
T Consensus 1 MK~~~~li~l~~~LlL~GCAg~~s~f~C~~t 31 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAGTNSEFECNAT 31 (171)
T ss_pred CchhhHHHHHHHHHHhccccCCCCCCCCCCC
Confidence 887655555444 5555 5543332349754
No 104
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.53 E-value=2e+02 Score=19.42 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=11.0
Q ss_pred CCCCCcEEEEEEEecCCCCCCeeE
Q 033390 94 PIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 94 Pl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
|-..|.|.|..+..-+-.-|.+.|
T Consensus 115 P~~~G~Y~f~v~a~p~G~~p~~~y 138 (146)
T PF10989_consen 115 PRSGGTYQFNVTAFPPGDNPIGQY 138 (146)
T ss_pred CCCCCeEEEEEEEECCCCCcccce
Confidence 334455555555444444444433
No 105
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=26.95 E-value=67 Score=17.14 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=9.5
Q ss_pred CCCcEEEEEEEec
Q 033390 96 AAGDFVLSHTQTL 108 (120)
Q Consensus 96 ~~G~~~~~~s~~i 108 (120)
+||.|++++....
T Consensus 11 ~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 11 KPGTYTLTVQATA 23 (41)
T ss_pred CCeEEEEEEEEEE
Confidence 6898888776543
No 106
>PF03627 PapG_N: PapG carbohydrate binding domain; InterPro: IPR005310 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus (this domain) and chaperone binding C terminus. The carbohydrate-binding domain interacts with the receptor glycan [, ].; GO: 0030246 carbohydrate binding, 0007155 cell adhesion; PDB: 2WMP_B 3ME0_B 1J8S_A 1J8R_A.
Probab=26.92 E-value=76 Score=23.16 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=11.4
Q ss_pred EEEEEecCCCCCCeeEEe
Q 033390 102 LSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 102 ~~~s~~iP~~~P~g~y~~ 119 (120)
+.+.+.+|.-+|.|+|++
T Consensus 154 l~f~~~LP~DLPkG~Y~~ 171 (226)
T PF03627_consen 154 LIFRVFLPVDLPKGDYSF 171 (226)
T ss_dssp EEEEEE--TT--SEEEEE
T ss_pred EEEEEEccccCCCCceee
Confidence 456688999999999986
No 107
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=26.65 E-value=38 Score=15.09 Aligned_cols=6 Identities=67% Similarity=0.966 Sum_probs=2.3
Q ss_pred HHHHHh
Q 033390 11 FLLLVS 16 (120)
Q Consensus 11 ~~l~~~ 16 (120)
+.|+++
T Consensus 10 vLLliS 15 (19)
T PF13956_consen 10 VLLLIS 15 (19)
T ss_pred HHHhcc
Confidence 334433
No 108
>PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain []. The other lobe, RNA polymerase Rpb2, domain 2, is nested within this domain.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H ....
Probab=26.41 E-value=2.3e+02 Score=20.10 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCccEEEEEEEEeCCCC----------------CCCCceEEEEEEEecceecCc-E-EEEEEEECeEEecCCCCCCCCC-
Q 033390 30 KNYAVTIQQVKIIPDPV----------------VTGKPATFNISAVTGQAVYGG-K-VVINVAYFGVPVHQETRDVCEE- 90 (120)
Q Consensus 30 ~~~~~~v~~v~i~P~p~----------------~~G~~~~i~~~~~~~~~v~~g-~-~~v~~~~~gi~~~~~~~dlC~~- 90 (120)
....+++.++.+.+-.. .||.+....+...+.-...+. . ....+.+|.+|++.. .+.|..
T Consensus 35 ~~~~l~~~~~~i~~P~~~~~~~~~~~l~P~ecR~r~~TYs~~l~v~i~~~~~~~~~~~~~~v~iG~iPiMv~-S~~C~L~ 113 (203)
T PF04563_consen 35 NRISLKFENIRIGKPTYSESDGRERPLYPRECRLRGLTYSAPLYVDIELTVNNKKEIKEQEVFIGKIPIMVR-SKRCNLN 113 (203)
T ss_dssp TTEEEEEEEEEEESESSEHTTSCEEE--HHHHHHTT-B-EEEEEEEEEEEESSTTEEEESEEEEEEEE-BTT-TTTSGGG
T ss_pred ceEEEEeeEEEEeeeeeccccccccCCCHHHHHhcCCCCCCccceEEEEEeeccceEEeeEEEEeeCCeEee-cceeeCC
Confidence 34677889999875221 245555555555555555555 3 355677888998876 577873
Q ss_pred ----------CCCCCCCC-cEE
Q 033390 91 ----------VSCPIAAG-DFV 101 (120)
Q Consensus 91 ----------~~CPl~~G-~~~ 101 (120)
-.||..+| .|-
T Consensus 114 ~~~~~~l~~~~E~~~d~GGYFI 135 (203)
T PF04563_consen 114 GLSPKELVQLGECPNDPGGYFI 135 (203)
T ss_dssp T--HHHHHHTTS-TT---SSEE
T ss_pred CCCHHHHHHcCCCCcCCCCEEE
Confidence 28999999 553
No 109
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=26.40 E-value=86 Score=17.52 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=4.4
Q ss_pred ceeecCCC
Q 033390 22 GVKYCDKK 29 (120)
Q Consensus 22 ~~~~C~~~ 29 (120)
....|...
T Consensus 26 ~~~~C~~d 33 (54)
T PF07127_consen 26 AIIPCKTD 33 (54)
T ss_pred CCcccCcc
Confidence 45666543
No 110
>PLN03160 uncharacterized protein; Provisional
Probab=26.39 E-value=2.6e+02 Score=20.37 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=6.8
Q ss_pred cEEEEEEEEeC
Q 033390 33 AVTIQQVKIIP 43 (120)
Q Consensus 33 ~~~v~~v~i~P 43 (120)
.+++.+++++-
T Consensus 68 ~~~v~~v~l~~ 78 (219)
T PLN03160 68 VIKMNGVTVTK 78 (219)
T ss_pred eEEEEEEEEee
Confidence 66666666654
No 111
>PRK15289 lpfA fimbrial protein; Provisional
Probab=25.90 E-value=1.7e+02 Score=20.52 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=10.3
Q ss_pred CCCcEEEEEEEec---CCCCCCeeEE
Q 033390 96 AAGDFVLSHTQTL---PSFTPPVRLL 118 (120)
Q Consensus 96 ~~G~~~~~~s~~i---P~~~P~g~y~ 118 (120)
..|+.++.+.... ...+-+|.+.
T Consensus 154 ~~g~~~l~f~A~y~~t~~~vt~G~~~ 179 (190)
T PRK15289 154 AEGKAEMKFIARYVATNATVTAGTAN 179 (190)
T ss_pred CCCcEEEEEEEEEEEcCCccccceEE
Confidence 4565444444321 2344556554
No 112
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=25.57 E-value=2e+02 Score=19.44 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCCCCCCcEEEEEEE
Q 033390 91 VSCPIAAGDFVLSHTQ 106 (120)
Q Consensus 91 ~~CPl~~G~~~~~~s~ 106 (120)
..+|+++|.|.+....
T Consensus 90 ~~~~ip~G~Y~Lv~~~ 105 (125)
T PF11033_consen 90 LSFDIPKGDYQLVFQT 105 (125)
T ss_pred EEEecCCCcEEEEEEE
Confidence 5899999999988653
No 113
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=25.32 E-value=55 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=11.6
Q ss_pred CCCCCCceEEEEEEEe
Q 033390 45 PVVTGKPATFNISAVT 60 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~ 60 (120)
.++.|+.++++..+.+
T Consensus 85 ~p~~gd~V~v~Y~~~~ 100 (177)
T TIGR03516 85 TPEFGDLVTFEYDIRA 100 (177)
T ss_pred cCCCCCEEEEEEEEEe
Confidence 3577888888877764
No 114
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=25.04 E-value=57 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=12.7
Q ss_pred CchhhHHHHHHHHHHhhccccce
Q 033390 1 MDRQLMLFACFLLLVSSTQAIGV 23 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~ 23 (120)
|.|+++.+++....++.|+...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (153)
T TIGR02738 1 MLRKLLIVLLLLAGLAQASTLDE 23 (153)
T ss_pred CchHHHHHHHHHHHHHhcccHHH
Confidence 67776666655544454544433
No 115
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=24.98 E-value=65 Score=20.55 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=11.1
Q ss_pred CchhhHHHHHHHHHHh
Q 033390 1 MDRQLMLFACFLLLVS 16 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~ 16 (120)
||+..+.+++++++++
T Consensus 1 mkkk~~~~~~~~~il~ 16 (92)
T TIGR01653 1 MKKKVVASLVSTTILA 16 (92)
T ss_pred CchhhHHHHHHHHHHh
Confidence 8877766666666664
No 116
>CHL00132 psaF photosystem I subunit III; Validated
Probab=24.58 E-value=86 Score=22.56 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=16.9
Q ss_pred CchhhHHHHHHHHHHh------hccccceeecCCC
Q 033390 1 MDRQLMLFACFLLLVS------STQAIGVKYCDKK 29 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~------~~~~~~~~~C~~~ 29 (120)
|++.+.+++++++++. .++......|.+.
T Consensus 1 mrrl~~l~l~~~l~~~~~p~~a~ad~agLtpCses 35 (185)
T CHL00132 1 MKKFNLLFLLLAALLLFNPIAAFADVAGLTPCSES 35 (185)
T ss_pred ChhHHHHHHHHHHHHhcCCccccccccCCccCccC
Confidence 8877666666665553 1233456667654
No 117
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=24.19 E-value=75 Score=19.66 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=8.3
Q ss_pred CchhhHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLL 14 (120)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (120)
||+++.++++++.+
T Consensus 1 MKK~~~~~~~i~~l 14 (80)
T PF11106_consen 1 MKKIIYGLFAILAL 14 (80)
T ss_pred ChhHHHHHHHHHHH
Confidence 89886655544433
No 118
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=24.00 E-value=64 Score=18.10 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=3.6
Q ss_pred CchhhHH
Q 033390 1 MDRQLML 7 (120)
Q Consensus 1 m~~~~~l 7 (120)
||+.+.+
T Consensus 2 mKk~i~~ 8 (48)
T PRK10081 2 VKKTIAA 8 (48)
T ss_pred hHHHHHH
Confidence 5655444
No 119
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=23.91 E-value=3.4e+02 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=21.0
Q ss_pred CCCCCCC-cEEEEEEEecCCCCCCeeEEe
Q 033390 92 SCPIAAG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 92 ~CPl~~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
.=.++|| +-++.|++...+...++.|.+
T Consensus 143 ~~~V~pg~~aT~~YsF~~~~~l~pr~f~L 171 (285)
T PF03896_consen 143 NREVPPGEEATFPYSFTPSEELAPRPFGL 171 (285)
T ss_pred CcccCCCCeEEEEEEEecchhcCCcceEE
Confidence 4478889 678888887777777777764
No 120
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=23.77 E-value=1.8e+02 Score=17.58 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=16.3
Q ss_pred EEEEEEEecceecCcEEEEEEEECeEEecC
Q 033390 53 TFNISAVTGQAVYGGKVVINVAYFGVPVHQ 82 (120)
Q Consensus 53 ~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~ 82 (120)
+..++++..+ .|...+.++++|.+++.
T Consensus 71 ~y~v~y~p~~---~G~y~i~V~~~g~~I~g 97 (101)
T PF00630_consen 71 TYTVSYTPTE---PGKYKISVKINGQPIPG 97 (101)
T ss_dssp EEEEEEEESS---SEEEEEEEEESSEB-TT
T ss_pred EEEEEEEeCc---cEeEEEEEEECCEECcC
Confidence 4555555555 56677777777766554
No 121
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=23.22 E-value=1e+02 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEeCCCCCCCCceEEEEEEE
Q 033390 39 VKIIPDPVVTGKPATFNISAV 59 (120)
Q Consensus 39 v~i~P~p~~~G~~~~i~~~~~ 59 (120)
+.++|--+++|...++++.|+
T Consensus 5 ~aV~P~~lkaG~~t~vti~Gt 25 (81)
T PF09099_consen 5 LAVSPAGLKAGEETTVTIVGT 25 (81)
T ss_dssp EEEESSEEETTCEEEEEEEEE
T ss_pred EEECchhccCCCeEEEEEEec
Confidence 357888899999988888887
No 122
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=23.05 E-value=1.7e+02 Score=17.82 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=3.5
Q ss_pred CCCCCcEE
Q 033390 94 PIAAGDFV 101 (120)
Q Consensus 94 Pl~~G~~~ 101 (120)
|-++|.|+
T Consensus 64 P~~~G~~~ 71 (93)
T smart00557 64 PTEPGDYT 71 (93)
T ss_pred eCCCEeEE
Confidence 44444443
No 123
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=22.99 E-value=1.4e+02 Score=17.43 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=13.1
Q ss_pred CCCcEEEEEEEecCCCCCCeeEE
Q 033390 96 AAGDFVLSHTQTLPSFTPPVRLL 118 (120)
Q Consensus 96 ~~G~~~~~~s~~iP~~~P~g~y~ 118 (120)
++|.|+|+.+.. +...+...|+
T Consensus 8 ~~G~Y~YtV~E~-~g~~~gvtYD 29 (64)
T TIGR03786 8 KVGTYTYTITEV-KGKEPGVTYD 29 (64)
T ss_pred CCeEEEEEEEEe-CCCCCCeEec
Confidence 478888877743 3445544553
No 124
>PRK15287 putative minor fimbrial subunit StfF; Provisional
Probab=22.79 E-value=2.6e+02 Score=19.12 Aligned_cols=13 Identities=0% Similarity=0.031 Sum_probs=7.0
Q ss_pred CCCCCCCceEEEE
Q 033390 44 DPVVTGKPATFNI 56 (120)
Q Consensus 44 ~p~~~G~~~~i~~ 56 (120)
|.+..|+++.+++
T Consensus 34 C~i~~~~~i~V~f 46 (158)
T PRK15287 34 CTINNDQTIDVKF 46 (158)
T ss_pred CEEcCCccEEEEc
Confidence 5555555555554
No 125
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.51 E-value=74 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=7.3
Q ss_pred CchhhHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLL 14 (120)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (120)
||+.+.|++++.++
T Consensus 3 ~~~~~~ll~~v~~l 16 (91)
T TIGR01165 3 MKKTIWLLAAVAAL 16 (91)
T ss_pred cchhHHHHHHHHHH
Confidence 56655555544433
No 126
>PRK11627 hypothetical protein; Provisional
Probab=22.51 E-value=3e+02 Score=19.76 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=12.4
Q ss_pred CCCCCCCcEEEE----EEEecCCCCCCe
Q 033390 92 SCPIAAGDFVLS----HTQTLPSFTPPV 115 (120)
Q Consensus 92 ~CPl~~G~~~~~----~s~~iP~~~P~g 115 (120)
.=.++.|.++|+ .++.|=.+.+.|
T Consensus 111 ~a~V~~g~~~~~i~~~~~i~i~v~~~ng 138 (192)
T PRK11627 111 YADVSEGNVRYNIATKADISIIATAQNG 138 (192)
T ss_pred ccccccceeeecccceEEEEEEEEecCC
Confidence 456777766544 223333455555
No 127
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.48 E-value=88 Score=21.63 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=3.4
Q ss_pred eecCCC
Q 033390 24 KYCDKK 29 (120)
Q Consensus 24 ~~C~~~ 29 (120)
.-||+.
T Consensus 21 ~gCgdk 26 (152)
T COG4808 21 AGCGDK 26 (152)
T ss_pred hhcCch
Confidence 348754
No 128
>COG3656 Predicted periplasmic protein [Function unknown]
Probab=22.46 E-value=84 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEe--cCCCCCCeeEEe
Q 033390 96 AAGDFVLSHTQT--LPSFTPPVRLLH 119 (120)
Q Consensus 96 ~~G~~~~~~s~~--iP~~~P~g~y~~ 119 (120)
.||+|.+..+-. --+.+|+|.|++
T Consensus 102 ~pG~y~l~~dg~k~~lk~lppG~Y~l 127 (172)
T COG3656 102 NPGTYALAWDGKKDKLKLLPPGDYYL 127 (172)
T ss_pred CCCceEEEecCccchhccCCCCcEEE
Confidence 478888777644 345789999986
No 129
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=21.69 E-value=2.2e+02 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=17.4
Q ss_pred eeecCCC----CCccEEEEEEEEeC--CCCCCCCceEEEEEEEecceecCcEEE
Q 033390 23 VKYCDKK----KNYAVTIQQVKIIP--DPVVTGKPATFNISAVTGQAVYGGKVV 70 (120)
Q Consensus 23 ~~~C~~~----~~~~~~v~~v~i~P--~p~~~G~~~~i~~~~~~~~~v~~g~~~ 70 (120)
+..|++. ..+.++| +..| ..+++|+++.|...-.-..+.++....
T Consensus 18 l~sC~deLDIQQ~YpF~v---~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~ 68 (137)
T PF12988_consen 18 LSSCDDELDIQQAYPFTV---ETMPVPKKIKKGETVEIRCELKREGNYADTRYT 68 (137)
T ss_dssp -----TTS------SEEE---EE----SS--TTEEEEEEEEEEESS--SS---E
T ss_pred HhhcCCccceeecCCcEE---EEeccccccCCCCEEEEEEEEecCceecccEEE
Confidence 4457654 2245544 4444 458889888877766655555444333
No 130
>PF13115 YtkA: YtkA-like
Probab=21.61 E-value=99 Score=18.43 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=32.9
Q ss_pred CCCCCCceEEEEEEE-ecceecCcEEEEEEEECeEEecCCCCCCCCC---CCCCCCCCcEEEEEEEecCCCCCCeeEEeC
Q 033390 45 PVVTGKPATFNISAV-TGQAVYGGKVVINVAYFGVPVHQETRDVCEE---VSCPIAAGDFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 45 p~~~G~~~~i~~~~~-~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~---~~CPl~~G~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
+++.|++ ++.+.-. -.+.+++..+.+.+..-. .....+.. ..=+..+|.|..+..+.. +|.|.++
T Consensus 16 ~~~~g~~-~i~v~~~~~g~pv~~a~V~~~~~m~~-----~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m-----~G~W~i~ 84 (86)
T PF13115_consen 16 PPKVGEN-TITVTVDQGGKPVTDADVQFEIWMPD-----MEGMEPMTSKVELEETGPGVYEAEVTFSM-----AGTWQIT 84 (86)
T ss_pred CCcCCce-EEEEEECCCCCCCCCCEEEEEEEeCC-----CCCCCCCceeeeeecCCCCeEEEEeecCC-----CeeEEEE
Confidence 6788888 6766511 123344444444333221 11122211 011267899988866554 6777763
No 131
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.53 E-value=1e+02 Score=23.62 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.9
Q ss_pred cEEEEEEEEe
Q 033390 33 AVTIQQVKII 42 (120)
Q Consensus 33 ~~~v~~v~i~ 42 (120)
.++|++-.|+
T Consensus 32 VAtvng~~IT 41 (309)
T PRK12450 32 LVSMKGDTIT 41 (309)
T ss_pred EEEECCeeec
Confidence 5566665555
No 132
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=21.08 E-value=3.5e+02 Score=19.98 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHh-hccccceeecCCCCC--------ccEEEEEEEEeCCCCCC
Q 033390 6 MLFACFLLLVS-STQAIGVKYCDKKKN--------YAVTIQQVKIIPDPVVT 48 (120)
Q Consensus 6 ~l~~~~~l~~~-~~~~~~~~~C~~~~~--------~~~~v~~v~i~P~p~~~ 48 (120)
.|..++.|+++ ..++..+..|.+-.. +..+.-+|.-.|.-+..
T Consensus 12 ~l~~~a~L~~~a~gqa~~lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~ 63 (224)
T KOG4824|consen 12 VLGFAAILLLSAAGQAIALGECPNYPVAKNFNVERYLGRWYEVASFPRGFEG 63 (224)
T ss_pred HHHHHHHHHhhcccceEeeccCCCCccccCCChhhhcceeeeeecccccccc
Confidence 34444445554 667889999987522 33355566666754443
No 133
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=21.01 E-value=73 Score=21.99 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=8.2
Q ss_pred CchhhHHHHHHHHH
Q 033390 1 MDRQLMLFACFLLL 14 (120)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (120)
||++.++.++++++
T Consensus 1 mk~~~l~a~l~~~~ 14 (142)
T PF10614_consen 1 MKYRGLLALLLLLL 14 (142)
T ss_pred CcEeHHHHHHHHHH
Confidence 88776655544444
No 134
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.92 E-value=73 Score=21.99 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=6.6
Q ss_pred cEEEEEEEECeE
Q 033390 67 GKVVINVAYFGV 78 (120)
Q Consensus 67 g~~~v~~~~~gi 78 (120)
+...+.+.|.|.
T Consensus 80 ~~~~i~V~Y~G~ 91 (148)
T PRK13254 80 GNATVPVVYTGI 91 (148)
T ss_pred CCeEEEEEECCC
Confidence 334456666663
No 135
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=20.78 E-value=2.7e+02 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=9.4
Q ss_pred ccEEEEEEEEeCCC
Q 033390 32 YAVTIQQVKIIPDP 45 (120)
Q Consensus 32 ~~~~v~~v~i~P~p 45 (120)
..-+|..+.-+|+.
T Consensus 30 ~D~RIr~v~Y~p~~ 43 (292)
T PRK13861 30 LDPRMRYLAYNPDQ 43 (292)
T ss_pred CCCceEEEEeCCCC
Confidence 35577777777764
No 136
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=20.76 E-value=3.2e+02 Score=19.39 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=21.0
Q ss_pred cEEEEEEEEeCC--------CCCCCCceEEEEEEEecceecCc
Q 033390 33 AVTIQQVKIIPD--------PVVTGKPATFNISAVTGQAVYGG 67 (120)
Q Consensus 33 ~~~v~~v~i~P~--------p~~~G~~~~i~~~~~~~~~v~~g 67 (120)
..+|-.|-+.|- ++..-.++++.++.-+.++-.+|
T Consensus 40 ~meiaaVYlQpveMeP~G~~~~a~~aDiHlEADIha~~~n~nG 82 (179)
T COG3470 40 GMEIAAVYLQPVEMEPRGMQLPAAEADIHLEADIHALKGNKNG 82 (179)
T ss_pred CeEEEEEEeeeeecccccCCCChhhccceeeeehhccccCCCC
Confidence 346666666662 34445567777777776665555
No 137
>PRK15190 fimbrial protein BcfE; Provisional
Probab=20.11 E-value=2.2e+02 Score=19.76 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=12.3
Q ss_pred CCCCCcEEEEEEEec---CCCCCCeeEE
Q 033390 94 PIAAGDFVLSHTQTL---PSFTPPVRLL 118 (120)
Q Consensus 94 Pl~~G~~~~~~s~~i---P~~~P~g~y~ 118 (120)
++.+|+.++.+.... ....-+|+++
T Consensus 144 ~~~~g~~~l~f~A~y~~t~~~vtaG~~~ 171 (181)
T PRK15190 144 PLKAGRNTLSFYIRYKSTRPTVTSGNAT 171 (181)
T ss_pred EccCCceEEEEEEEEEEcCCCccceeee
Confidence 455675444444332 2245567664
Done!