BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033394
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
           Fluorogeranyl Diphosphate (Fgpp).
 pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
           Fluorogeranyl Diphosphate (Fgpp).
 pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
           Fluorolinalyl Diphosphate(flpp)
 pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
           Fluorolinalyl Diphosphate(flpp)
          Length = 543

 Score = 28.9 bits (63), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 86  KIRRADAPIWWKWGRKR 102
           +I+R +AP+W +W RKR
Sbjct: 197 RIKRPNAPVWIEWYRKR 213


>pdb|1P94|A Chain A, Nmr Structure Of Parg Symmetric Dimer
 pdb|1P94|B Chain B, Nmr Structure Of Parg Symmetric Dimer
          Length = 76

 Score = 28.5 bits (62), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 13 SISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRF 65
          S+  + TSV K+  GEN   E   +AP  SG     ++ ++ +NF     +RF
Sbjct: 2  SLEKAHTSVKKMTFGENRDLERVVTAPVSSG-----KIKRVNVNFDEEKHTRF 49


>pdb|2ZZV|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Calcium And Lactate
 pdb|2ZZV|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Calcium And Lactate
 pdb|2ZZW|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Zinc And Lactate
 pdb|2ZZW|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Zinc And Lactate
 pdb|2ZZX|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|C Chain C, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|D Chain D, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
          Length = 361

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 50  VLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGR 100
           + K  +  WP       E+  L          + ++K RR   PIW+KW +
Sbjct: 287 IQKANLEAWPKYRQAGVEVIRL--------SNEDVRKFRRLAIPIWFKWAK 329


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 41   KSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGR 100
            ++G + +LE++  ++       SRF   +++W I    ++K  I     A+  + W W  
Sbjct: 987  ENGAIEILELVNNRI-----FQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQV-WNWQL 1040

Query: 101  KRLLYQIIKGH 111
             + ++  ++GH
Sbjct: 1041 DKCIF--LRGH 1049


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,151,134
Number of Sequences: 62578
Number of extensions: 102959
Number of successful extensions: 238
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 6
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)