BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033394
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Query: 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
M I YNLRSIS+SAT+VIKVLLGENP EL + PS +GL TVL+VL IQ+ FWP
Sbjct: 436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495
Query: 60 SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
SLA +++L S E ENKK Q+K+ + P WWKWGRK+LLY + + RS+
Sbjct: 496 SLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNFLSARMISRSK 552
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 9 YNLRSISSSATSVIKVLLGE--NPGCELGDSA---PSKSGLVTVLEVLKIQMNFWPSL-- 61
YNL SIS++A ++ L+GE + G DS P++S L T+ +V+ I FWP+L
Sbjct: 800 YNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQSALETLQKVIAIHKGFWPALHG 859
Query: 62 ---ASRFTELQ 69
A TE+Q
Sbjct: 860 QEAAINTTEMQ 870
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGD--SAPSKSGLVTVLEVLKIQMNFWPSLASR 64
YNL +I+ SA SV KVL+GE P EL D S P + + +V+++Q +W R
Sbjct: 378 YNLDAIARSALSVAKVLIGEPPD-ELPDPLSDPKPEVIEMIDKVIRLQSKYWNCFRRR 434
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSG-LVTVLEVLKIQMNFWPSLASRFTE 67
YNL SIS S + LLG+ P +L P +SG LV++ EV+++ +W SL R +
Sbjct: 781 YNLASISESMAACTHSLLGDPPP-QLTLLRPPQSGALVSISEVIQVHRKYWRSL--RLMK 837
Query: 68 LQSLWEIYAAENKKKQIKKIRRADAPI 94
++ E + + IKK+ +P+
Sbjct: 838 MEDKEE---CSSSRLVIKKLPPTASPV 861
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFW 58
YNL SIS+SA +V + LLG PG L + + T+ V KIQ +W
Sbjct: 367 YNLDSISTSALAVAQSLLGIPPG-RLHTTYACPQAVATINHVTKIQSQYW 415
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 14/73 (19%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELG-------DSAPSKSGLVTVLEVLKIQMNFWPSL 61
Y+L+SIS +A ++ L+GE+ + G +S P+ S + T+ +V+ I ++WP+L
Sbjct: 780 YDLKSISEAAQQCVQALIGESD--DAGRLSSVALESLPNPSAVETLQKVIAIHKSYWPAL 837
Query: 62 -----ASRFTELQ 69
A TE+Q
Sbjct: 838 HGQEAAINTTEMQ 850
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 61
Y+L S++ S +++ LLG+ LG P +S L ++ V Q +W SL
Sbjct: 305 YHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQSVQTAQTPYWTSL 357
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFT 66
YNL SI+ S+ + ++VLL + ++ P +S + V K +WPSLA +
Sbjct: 331 YNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQAVRKRLCTYWPSLADELS 388
>sp|Q9UKZ1|CB029_HUMAN UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1
Length = 510
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 44 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 78
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 104 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 138
>sp|B0BNA9|CB029_RAT UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 504
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 44 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 78
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 98 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 132
>sp|Q9CWN7|CB029_MOUSE UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2
SV=1
Length = 505
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 44 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 78
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 99 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 133
>sp|A8ALA6|LPXB_CITK8 Lipid-A-disaccharide synthase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=lpxB PE=3 SV=1
Length = 382
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 43 GLVTVLEVLKIQMNFWPSLASRFTELQ---------SLWEIYAAENKKKQIKKIRRADAP 93
G+V VL L+ ++ L RFTELQ + I N KKQ K +P
Sbjct: 64 GIVEVLGRLRRLLHIRADLTRRFTELQPDVFVGIDAPDFNITLEGNLKKQGIKTIHYVSP 123
Query: 94 IWWKWGRKRLL 104
W W +KR+
Sbjct: 124 SVWAWRQKRVF 134
>sp|B8M3A8|PURA_TALSN Adenylosuccinate synthetase OS=Talaromyces stipitatus (strain ATCC
10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=TSTA_095260
PE=3 SV=1
Length = 422
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 31 GCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRA 90
G L DS P+ L+ LEV I + W + T+ + L EN +K ++ I R
Sbjct: 347 GTRLEDSYPADPNLIEKLEVEYITLPGWKTNTMGLTKYEDL-----PENAQKYVEYIERG 401
Query: 91 --DAPIWW 96
PI W
Sbjct: 402 LDGVPIKW 409
>sp|Q5P2G2|TRPD_AROAE Anthranilate phosphoribosyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=trpD PE=3 SV=1
Length = 343
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 35 GDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKK--KQIKKIRR 89
G S SKSG VLE L +++ P + E + +YA + K + +RR
Sbjct: 116 GRSVSSKSGAADVLEALGVKLGLAPEQVAESIEATGIGFMYAPAHHSAMKNVAAVRR 172
>sp|Q2KHV9|K2013_BOVIN Uncharacterized protein KIAA2013 homolog OS=Bos taurus PE=2 SV=1
Length = 634
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 56 NFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAP 93
N WP S ++ LW+++ +K+ K + RA AP
Sbjct: 411 NLWPGRLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAP 448
>sp|A4QP78|CB029_DANRE UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2
SV=1
Length = 445
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 43 GLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 78
G+ +VL +L Q + PS R T L LWE+Y E
Sbjct: 42 GVGSVLVMLLQQPDLLPSAPQRLTALYLLWEMYRTE 77
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 69 QSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGH 111
+ +W AE ++K ++ +R D P W+ ++ Y K H
Sbjct: 1423 KGMWNKIPAEEREKYVEAMREHDVPEWYIESCSKIKYMFPKAH 1465
>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7
PE=1 SV=1
Length = 725
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 7 CSYNLRSISSSATSVIKVLLGE-NPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRF 65
CS + +S S S ++K + GE PG L PS SG T+L VL Q++ P L
Sbjct: 77 CSLSDKS-SKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRL---- 131
Query: 66 TELQSLWEIYAAENKKKQIK 85
L L E+ + K K
Sbjct: 132 -HLSGLLEVNGKPSSSKAYK 150
>sp|Q8N431|RGF1C_HUMAN Ras-GEF domain-containing family member 1C OS=Homo sapiens
GN=RASGEF1C PE=2 SV=2
Length = 466
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 27 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 70
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|Q95KH6|RGF1C_MACFA Ras-GEF domain-containing family member 1C OS=Macaca fascicularis
GN=RASGEF1C PE=2 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 27 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 70
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|A4IH88|K2013_XENTR Uncharacterized protein KIAA2013 homolog OS=Xenopus tropicalis PE=2
SV=1
Length = 608
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 56 NFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADA 92
N WPS S T+L LW+++ +K+ K + A A
Sbjct: 385 NLWPSSLSGITQLLQLWDLWKLTLQKRGCKSLVSAGA 421
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASR 64
Y+L S++ S ++ LLG+ G AP +S L ++ Q W SL +
Sbjct: 305 YHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQSARAAQAPHWKSLQQQ 360
>sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C OS=Mus musculus
GN=Rasgef1c PE=2 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 27 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 70
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLDTLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 41 KSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRAD 91
+ G+ TVL+ K+++N + RF +L + + +KQ K+RR D
Sbjct: 421 EPGIETVLDFSKLRINDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQD 471
>sp|A7TMC5|ATG23_VANPO Autophagy-related protein 23 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG23 PE=3 SV=1
Length = 491
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 50 VLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQ 83
VL ++N W + ++ +L++ +IY ++NKKK+
Sbjct: 314 VLNQKINLWEQVINQLNDLENSLKIYLSKNKKKK 347
>sp|Q6ZYA7|GPD2_CYBJA Glycerol-3-phosphate dehydrogenase [NAD(+)] 2 OS=Cyberlindnera
jadinii GN=gpd2 PE=3 SV=2
Length = 394
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 13 SISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPS-LASRFTE 67
S + + ++I + +G G E GD+A + +LE++K F+P L S FTE
Sbjct: 237 SCAGALKNIIAISVGFVEGLEWGDNAKAAMLRRGLLEMIKFGRKFFPGCLVSSFTE 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,267,624
Number of Sequences: 539616
Number of extensions: 1300824
Number of successful extensions: 3666
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3639
Number of HSP's gapped (non-prelim): 41
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)