Query 033394
Match_columns 120
No_of_seqs 138 out of 550
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1343 Histone deacetylase co 99.0 7.4E-10 1.6E-14 99.6 6.3 63 1-63 731-796 (797)
2 KOG1343 Histone deacetylase co 98.3 8.8E-07 1.9E-11 80.1 4.7 63 1-64 329-391 (797)
3 PTZ00346 histone deacetylase; 97.1 0.00058 1.3E-08 58.4 3.8 31 1-31 310-340 (429)
4 COG0123 AcuC Deacetylases, inc 96.6 0.0024 5.3E-08 52.9 4.1 31 1-31 285-315 (340)
5 PTZ00063 histone deacetylase; 95.9 0.0072 1.6E-07 51.8 3.4 28 1-28 292-319 (436)
6 PF09757 Arb2: Arb2 domain; I 93.5 0.066 1.4E-06 40.1 2.7 26 38-63 9-34 (178)
7 PF09846 DUF2073: Uncharacteri 52.1 18 0.00039 25.6 2.9 41 2-42 22-62 (104)
8 COG3365 Uncharacterized protei 46.6 18 0.00039 26.0 2.2 28 2-29 35-62 (118)
9 KOG3208 SNARE protein GS28 [In 37.2 42 0.0009 26.9 3.2 36 38-73 82-117 (231)
10 cd07047 BMC_PduB_repeat1 1,2-p 30.5 72 0.0016 23.4 3.3 26 2-27 80-105 (134)
11 KOG1342 Histone deacetylase co 27.3 77 0.0017 27.5 3.4 29 2-30 295-323 (425)
12 COG5105 MIH1 Mitotic inducer, 25.0 32 0.00069 29.4 0.7 8 2-9 345-352 (427)
13 cd00949 FBP_aldolase_I_bact Fr 22.7 44 0.00096 27.6 1.1 12 2-13 233-244 (292)
14 PRK05377 fructose-1,6-bisphosp 21.8 48 0.001 27.5 1.1 12 2-13 236-247 (296)
15 KOG0860 Synaptobrevin/VAMP-lik 21.4 2.2E+02 0.0048 20.4 4.4 51 44-97 35-90 (116)
No 1
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=98.98 E-value=7.4e-10 Score=99.64 Aligned_cols=63 Identities=24% Similarity=0.462 Sum_probs=55.6
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCccccc
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLAS 63 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~---~~~ps~~~~~tI~~Vi~~q~~yW~~L~~ 63 (120)
++++||||||+.++++|+.+|+++|+|++.++++. +..|+..+..++++++.+|++||+|++.
T Consensus 731 vv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~~ 796 (797)
T KOG1343|consen 731 VVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQG 796 (797)
T ss_pred EEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhcccccccC
Confidence 47899999999999999999999999998776543 2467788999999999999999999963
No 2
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=98.27 E-value=8.8e-07 Score=80.10 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=56.1
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcccccc
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASR 64 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~~~ps~~~~~tI~~Vi~~q~~yW~~L~~~ 64 (120)
++++||||||+++++++ ..++..|+|++++.+..+..|.+++.+++..+.++|..||+|+...
T Consensus 329 l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~~ 391 (797)
T KOG1343|consen 329 LVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGGS 391 (797)
T ss_pred cceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccCC
Confidence 46789999999999999 8999999999987776656688999999999999999999999644
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=97.06 E-value=0.00058 Score=58.35 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=28.1
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG 31 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~ 31 (120)
++++||||||+.++++|.+.++.+|+|.+.+
T Consensus 310 lv~vleGGY~~~~lar~w~~~t~~l~g~~i~ 340 (429)
T PTZ00346 310 MLALGGGGYTIRNVAKLWAYETSILTGHPLP 340 (429)
T ss_pred EEEEeCCcCCccHHHHHHHHHHHHHcCCCCC
Confidence 5789999999999999999999999998643
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.62 E-value=0.0024 Score=52.91 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.9
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG 31 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~ 31 (120)
++++|||||++++++.++.+.+..|.|.+..
T Consensus 285 ~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~ 315 (340)
T COG0123 285 VVAVLEGGYNLDALARSLVAFLAGLAGLVEE 315 (340)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHcCCCcc
Confidence 4789999999999999999999999997543
No 5
>PTZ00063 histone deacetylase; Provisional
Probab=95.93 E-value=0.0072 Score=51.83 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=26.2
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGE 28 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~ 28 (120)
+++++|||||+.++++|.+..+.+++|.
T Consensus 292 il~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 292 LLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred EEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999995
No 6
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=93.53 E-value=0.066 Score=40.08 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHHHHHhccCccccc
Q 033394 38 APSKSGLVTVLEVLKIQMNFWPSLAS 63 (120)
Q Consensus 38 ~ps~~~~~tI~~Vi~~q~~yW~~L~~ 63 (120)
.+++.|.+++++|+.+|++||+||.+
T Consensus 9 ~~~~~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 9 VASPSAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp ---HHHHHHHHHHHHHHTTT-GGGTS
T ss_pred CCCHHHeeeHHHHHHHHHHHHHHhcC
Confidence 56889999999999999999999966
No 7
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.14 E-value=18 Score=25.60 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=29.8
Q ss_pred eeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCCCCCChh
Q 033394 2 SYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKS 42 (120)
Q Consensus 2 vvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~~~ps~~ 42 (120)
++|||+|-.++--+.=..+++....-|..+..+..+.|...
T Consensus 22 IvVLE~GLtPeEe~~LIE~TM~eI~~d~F~GIEiesyp~~~ 62 (104)
T PF09846_consen 22 IVVLEEGLTPEEESKLIEMTMTEIDPDEFSGIEIESYPSKE 62 (104)
T ss_pred EEEEcCCCChHHHHHHHHHHHHhcCccccCceEEEecCccc
Confidence 68999999999988888888887765555444434455544
No 8
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.58 E-value=18 Score=25.96 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=22.9
Q ss_pred eeeecCCCChhhHHHHHHHHHHHHcCCC
Q 033394 2 SYIFVCSYNLRSISSSATSVIKVLLGEN 29 (120)
Q Consensus 2 vvvLEGGYNL~sla~sa~avlr~LlG~~ 29 (120)
++|||||-+++..+.-..+++...--+.
T Consensus 35 IlVLE~gL~P~eeaklIe~TM~eId~e~ 62 (118)
T COG3365 35 ILVLEGGLTPEEEAKLIEMTMSEIDPEN 62 (118)
T ss_pred EEEEeCCCChHHHHHHHHHHHHhcCccc
Confidence 6899999999999988888887664443
No 9
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.17 E-value=42 Score=26.86 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHHHHHhccCcccccchhhhHHHHH
Q 033394 38 APSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWE 73 (120)
Q Consensus 38 ~ps~~~~~tI~~Vi~~q~~yW~~L~~~~~~~~~~~~ 73 (120)
+++.....++..-.++++.||.-+...-....+.++
T Consensus 82 a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e 117 (231)
T KOG3208|consen 82 ANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRE 117 (231)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999777666665443
No 10
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=30.45 E-value=72 Score=23.36 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=20.5
Q ss_pred eeeecCCCChhhHHHHHHHHHHHHcC
Q 033394 2 SYIFVCSYNLRSISSSATSVIKVLLG 27 (120)
Q Consensus 2 vvvLEGGYNL~sla~sa~avlr~LlG 27 (120)
.+++-||||..++.+++.+.++.+..
T Consensus 80 ~vvitGg~dVs~V~~aVeaa~~~v~~ 105 (134)
T cd07047 80 SLILFGAEDVSDVRRAVEVALSETEK 105 (134)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 36889999999988888777776543
No 11
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=27.32 E-value=77 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=23.4
Q ss_pred eeeecCCCChhhHHHHHHHHHHHHcCCCC
Q 033394 2 SYIFVCSYNLRSISSSATSVIKVLLGENP 30 (120)
Q Consensus 2 vvvLEGGYNL~sla~sa~avlr~LlG~~p 30 (120)
.++=.|||++..+|+|=+--.-+++|...
T Consensus 295 lvlGGGGYT~rNVARcWtYeT~v~~~~~~ 323 (425)
T KOG1342|consen 295 LVLGGGGYTLRNVARCWTYETGVLLDQEL 323 (425)
T ss_pred EEecCCccchhhhHHHHHHHhhhhcCccc
Confidence 45667999999999998777777888653
No 12
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=24.95 E-value=32 Score=29.38 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=7.3
Q ss_pred eeeecCCC
Q 033394 2 SYIFVCSY 9 (120)
Q Consensus 2 vvvLEGGY 9 (120)
|.+|||||
T Consensus 345 vyIl~GGY 352 (427)
T COG5105 345 VYILEGGY 352 (427)
T ss_pred EEEecCcH
Confidence 68999999
No 13
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=22.70 E-value=44 Score=27.60 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=10.4
Q ss_pred eeeecCCCChhh
Q 033394 2 SYIFVCSYNLRS 13 (120)
Q Consensus 2 vvvLEGGYNL~s 13 (120)
||+|.|||+-+-
T Consensus 233 vvalsggysr~~ 244 (292)
T cd00949 233 VVALSGGYSREE 244 (292)
T ss_pred EEEcCCCcCHHH
Confidence 789999998874
No 14
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.81 E-value=48 Score=27.47 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=10.4
Q ss_pred eeeecCCCChhh
Q 033394 2 SYIFVCSYNLRS 13 (120)
Q Consensus 2 vvvLEGGYNL~s 13 (120)
||+|.|||+-+-
T Consensus 236 vVaLSGGysr~e 247 (296)
T PRK05377 236 VVALSGGYSRDE 247 (296)
T ss_pred EEEccCCcCHHH
Confidence 789999998874
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.37 E-value=2.2e+02 Score=20.43 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcc-Cccc--ccchhhhH--HHHHHHhhhhhhHHHHhhhhcCCchhhh
Q 033394 44 LVTVLEVLKIQMNF-WPSL--ASRFTELQ--SLWEIYAAENKKKQIKKIRRADAPIWWK 97 (120)
Q Consensus 44 ~~tI~~Vi~~q~~y-W~~L--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (120)
..-|++|+.+.+.- =+.| ++.+..|+ +++=+-+-+.|.....|.|| .+|||
T Consensus 35 q~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr---k~wWk 90 (116)
T KOG0860|consen 35 QAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR---KMWWK 90 (116)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34577777766533 3444 45566666 33333444677777777776 57865
Done!