Query 033394
Match_columns 120
No_of_seqs 138 out of 550
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 99.5 2.1E-14 7.3E-19 119.9 6.9 64 1-64 353-419 (421)
2 2vqm_A HD4, histone deacetylas 99.4 6.8E-13 2.3E-17 110.2 6.4 64 1-64 324-390 (413)
3 1zz1_A Histone deacetylase-lik 98.1 2.3E-06 8E-11 70.1 4.4 58 1-58 304-365 (369)
4 1c3p_A Protein (HDLP (histone 97.8 3.2E-05 1.1E-09 63.5 6.6 53 1-64 289-341 (375)
5 4a69_A Histone deacetylase 3,; 97.0 0.00044 1.5E-08 56.8 4.1 31 1-31 290-320 (376)
6 3ew8_A HD8, histone deacetylas 97.0 0.0005 1.7E-08 56.8 4.0 31 1-31 298-328 (388)
7 3max_A HD2, histone deacetylas 96.7 0.0013 4.5E-08 53.9 4.1 31 1-31 289-319 (367)
8 2jui_A PLNE; ampiphilic alpha 18.4 1.1E+02 0.0037 16.2 2.5 16 6-24 3-18 (33)
9 2f2l_A Peptidoglycan-recogniti 17.6 45 0.0015 23.6 1.2 16 38-53 110-125 (167)
10 1v54_J Cytochrome C oxidase po 16.8 96 0.0033 18.6 2.4 17 92-108 18-35 (59)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.50 E-value=2.1e-14 Score=119.90 Aligned_cols=64 Identities=13% Similarity=0.309 Sum_probs=56.5
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCcccccc
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLASR 64 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~---~~~ps~~~~~tI~~Vi~~q~~yW~~L~~~ 64 (120)
++++||||||+++|++|+.+|+++|+|+++++++. ...|+.++.++|++|+++|++||+||+..
T Consensus 353 vv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~~a~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 353 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC-
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 57899999999999999999999999998766543 24789999999999999999999999753
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.36 E-value=6.8e-13 Score=110.24 Aligned_cols=64 Identities=16% Similarity=0.341 Sum_probs=56.7
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCC---CCCChhHHHHHHHHHHHHhccCcccccc
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGD---SAPSKSGLVTVLEVLKIQMNFWPSLASR 64 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~---~~ps~~~~~tI~~Vi~~q~~yW~~L~~~ 64 (120)
++++||||||++++++|+.+++++|+|++.++++.. ..|+..+.++|++|+++|++||+||+..
T Consensus 324 ~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~~~~W~~l~~~ 390 (413)
T 2vqm_A 324 IVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRT 390 (413)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHTTCGGGTSC
T ss_pred EEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 478999999999999999999999999987665532 3688999999999999999999999764
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=98.09 E-value=2.3e-06 Score=70.08 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=43.1
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCC----CCCChhHHHHHHHHHHHHhccC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGD----SAPSKSGLVTVLEVLKIQMNFW 58 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~----~~ps~~~~~tI~~Vi~~q~~yW 58 (120)
++++||||||++++++|+.+++++|+|.++.+.+.. ..|+.+..+.+.++++..+.+|
T Consensus 304 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 304 IVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLL 365 (369)
T ss_dssp EEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGG
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999876111110 1334455667777777777777
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=97.83 E-value=3.2e-05 Score=63.47 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=39.1
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcccccc
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASR 64 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~~~ps~~~~~tI~~Vi~~q~~yW~~L~~~ 64 (120)
++++||||||+.++++|+++++++|+|.+.++. -| .... + ..+..+|++..+.
T Consensus 289 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~----lp-~~~~----~--~~~~~~~~~~~~~ 341 (375)
T 1c3p_A 289 GVYLGGGGYHPYALARAWTLIWCELSGREVPEK----LN-NKAK----E--LLKSIDFEEFDDE 341 (375)
T ss_dssp CEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS----CC-HHHH----H--HHHHSCCCCSSTT
T ss_pred eEEEECCCCChHHHHHHHHHHHHHHcCCCCCcc----CC-HHHH----H--HHHhcCcccccCC
Confidence 589999999999999999999999999874322 12 1111 2 2366899988644
No 5
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=97.04 E-value=0.00044 Score=56.81 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=28.0
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG 31 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~ 31 (120)
+++++|||||++++++|.+.+..+|+|.+.+
T Consensus 290 ~v~v~eGGY~~~~var~w~~~~a~l~g~~~~ 320 (376)
T 4a69_A 290 LLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320 (376)
T ss_dssp EEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence 4789999999999999999999999998643
No 6
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=96.99 E-value=0.0005 Score=56.82 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=27.8
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG 31 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~ 31 (120)
+++++|||||+.++++|.+.+..+|+|.+.+
T Consensus 298 ~l~~~gGGY~~~~var~w~~~~~~l~g~~l~ 328 (388)
T 3ew8_A 298 TLILGGGGYNLANTARCWTYLTGVILGKTLS 328 (388)
T ss_dssp EEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence 3678999999999999999999999998743
No 7
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=96.68 E-value=0.0013 Score=53.90 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=28.0
Q ss_pred CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394 1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG 31 (120)
Q Consensus 1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~ 31 (120)
+++++|||||+.++++|.+.+..+++|.+.+
T Consensus 289 ~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 289 LLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp EEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 4789999999999999999999999998644
No 8
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=18.39 E-value=1.1e+02 Score=16.17 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=9.9
Q ss_pred cCCCChhhHHHHHHHHHHH
Q 033394 6 VCSYNLRSISSSATSVIKV 24 (120)
Q Consensus 6 EGGYNL~sla~sa~avlr~ 24 (120)
-||||..- |+..++..
T Consensus 3 rggynfgk---svrhvid~ 18 (33)
T 2jui_A 3 RGGYNFGK---SVRHVVDA 18 (33)
T ss_dssp SCSCCSSH---HHHHHHHH
T ss_pred ccccccch---hHHHHHHH
Confidence 48999874 44444443
No 9
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Probab=17.62 E-value=45 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=9.8
Q ss_pred CCChhHHHHHHHHHHH
Q 033394 38 APSKSGLVTVLEVLKI 53 (120)
Q Consensus 38 ~ps~~~~~tI~~Vi~~ 53 (120)
.|++..++++..++..
T Consensus 110 ~Pt~aq~~al~~Li~~ 125 (167)
T 2f2l_A 110 QPSAKQLSVTRLLLER 125 (167)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4456666777766653
No 10
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=16.82 E-value=96 Score=18.59 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=13.6
Q ss_pred Cchhhhhchh-hHhHHHH
Q 033394 92 APIWWKWGRK-RLLYQII 108 (120)
Q Consensus 92 ~~~~~~~g~k-r~~~~~~ 108 (120)
.|+|+|=|+. .+||-..
T Consensus 18 ~pv~lKgg~sd~~Ly~~t 35 (59)
T 1v54_J 18 LPVHLKGGATDNILYRVT 35 (59)
T ss_dssp CCTTTTTCHHHHHHHHHH
T ss_pred ceeEeecCcCceeHHHHH
Confidence 4999999988 7788653
Done!