RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033394
(120 letters)
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2. Histone
deacetylase 6 is a class IIb Zn-dependent enzyme that
catalyzes hydrolysis of N(6)-acetyl-lysine residue of a
histone to yield a deacetylated histone (EC 3.5.1.98).
Histone acetylation/deacetylation process is important
for mediation of transcriptional regulation of many
genes. HDACs usually act via association with DNA
binding proteins to target specific chromatin regions.
HDAC6 is the only histone deacetylase with internal
duplication of two catalytic domains which appear to
function independently of each other, and also has a
C-terminal ubiquitin-binding domain. It is located in
the cytoplasm and associates with microtubule motor
complex, functioning as the tubulin deacetylase and
regulating microtubule-dependent cell motility. Known
interaction partners of HDAC6 are alpha tubulin and
ubiquitin-like modifier FAT10 (also known as Ubiquitin D
or UBD).
Length = 350
Score = 48.5 bits (116), Expect = 9e-08
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLA 62
YNL SIS S + K LLG+ P P S L ++ VL++ +W SL
Sbjct: 297 YNLTSISESMSMCTKTLLGDPPPVLDLPRPPCSSALKSINNVLQVHQKYWKSLR 350
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar
proteins. Clr3 is a class II Histone deacetylase
Zn-dependent enzyme that catalyzes hydrolysis of an
N(6)-acetyl-lysine residue of a histone to yield a
deacetylated histone (EC 3.5.1.98). Clr3 is the homolog
of the class-II HDAC HdaI in S. cerevisiae, and is
essential for silencing in heterochromatin regions, such
as centromeric regions, ribosomal DNA, the mating-type
region and telomeric loci. Clr3 has also been implicated
in the regulation of stress-related genes; the histone
acetyltransferase, Gcn5, in S. cerevisiae,
preferentially acetylates global histone H3K14 while
Clr3 preferentially deacetylates H3K14ac, and therefore,
interplay between Gcn5 and Clr3 is crucial for the
regulation of many stress-response genes.
Length = 313
Score = 43.5 bits (103), Expect = 4e-06
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 9 YNLRSISSSATSVIKVLLGENPG 31
YNL +IS SA +V KVLLGE P
Sbjct: 288 YNLDAISDSALAVAKVLLGEAPP 310
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1. Histone
deacetylases 6 are class IIb Zn-dependent enzymes that
catalyze hydrolysis of N(6)-acetyl-lysine of a histone
to yield a deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC6 is
the only histone deacetylase with internal duplication
of two catalytic domains which appear to function
independently of each other, and also has a C-terminal
ubiquitin-binding domain. It is located in the cytoplasm
and associates with microtubule motor complex,
functioning as the tubulin deacetylase and regulating
microtubule-dependent cell motility. Known interaction
partners of HDAC6 are alpha tubulin (substrate) and
ubiquitin-like modifier FAT10 (also known as Ubiquitin D
or UBD).
Length = 337
Score = 32.9 bits (75), Expect = 0.022
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDS--APSKSGLVTVLEVLKIQMNFW 58
YNLRS++ + +K LLG+ P C + +S AP +S L +V + FW
Sbjct: 288 YNLRSLAEGVCASLKALLGD-P-CPMLESPGAPCRSALASVSCTISALEPFW 337
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10. Histone deacetylases 10
are class IIb Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC10
has an N-terminal deacetylase domain and a C-terminal
pseudo-repeat that shares significant similarity with
its catalytic domain. It is located in the nucleus and
cytoplasm, and is involved in regulation of
melanogenesis. It transcriptionally down-regulates
thioredoxin-interacting protein (TXNIP), leading to
altered reactive oxygen species (ROS) signaling in human
gastric cancer cells. Known interaction partners of
HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins.
Length = 337
Score = 30.6 bits (69), Expect = 0.13
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFW 58
Y+L S++ S ++ LLG+ G+ P +S L ++ V Q +W
Sbjct: 288 YHLESLAESVCMTVQTLLGDPLPRLSGEMTPCQSALESIQNVRAAQAPYW 337
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and
histone deacetylase 10. Histone deacetylases 6 and 10
are class IIb Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC6 is
the only histone deacetylase with internal duplication
of two catalytic domains which appear to function
independently of each other, and also has a C-terminal
ubiquitin-binding domain. It is located in the cytoplasm
and associates with microtubule motor complex,
functioning as the tubulin deacetylase and regulating
microtubule-dependent cell motility. HDAC10 has an
N-terminal deacetylase domain and a C-terminal
pseudo-repeat that shares significant similarity with
its catalytic domain. It is located in the nucleus and
cytoplasm, and is involved in regulation of
melanogenesis. It transcriptionally down-regulates
thioredoxin-interacting protein (TXNIP), leading to
altered reactive oxygen species (ROS) signaling in human
gastric cancer cells. Known interaction partners of
HDAC6 are alpha tubulin (substrate) and ubiquitin-like
modifier FAT10 (also known as Ubiquitin D or UBD) while
interaction partners of HDAC10 are Pax3, KAP1, hsc70 and
HDAC3 proteins.
Length = 336
Score = 30.4 bits (69), Expect = 0.21
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 9 YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFW 58
Y L S++ S + ++ LLG+ P L P +S L T+L + W
Sbjct: 288 YLLESLAESVSMTLRGLLGD-PLPPLAPPIPIRSVLETILNAIAHLSPRW 336
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa. Class IIa
histone deacetylases are Zn-dependent enzymes that
catalyze hydrolysis of N(6)-acetyl-lysine residues of
histones (EC 3.5.1.98) to yield deacetylated histones.
This subclass includes animal HDAC4, HDAC5, HDAC7, and
HDCA9. Histone acetylation/deacetylation process is
important for mediation of transcriptional regulation of
many genes. Histone deacetylases usually act via
association with DNA binding proteins to target specific
chromatin regions. Class IIa histone deacetylases are
signal-dependent co-repressors, they have N-terminal
regulatory domain with two or three conserved serine
residues, phosphorylation of these residues is important
for ability to shuttle between the nucleus and cytoplasm
and act as transcriptional co-repressors. HDAC9 is
involved in regulation of gene expression and dendritic
growth in developing cortical neurons. It also plays a
role in hematopoiesis. HDAC7 is involved in regulation
of myocyte migration and differentiation. HDAC5 is
involved in integration of chronic drug (cocaine)
addiction and depression with changes in chromatin
structure and gene expression. HDAC4 participates in
regulation of chondrocyte hypertrophy and
skeletogenesis.
Length = 377
Score = 29.6 bits (67), Expect = 0.30
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 9 YNLRSISSSATSVIKVLLGENP---GCELGDSAPSKSGLVTVLEVLKIQMNFW 58
Y+L +I ++ + ++ LLG+ E + P+ + + ++ +V+ IQ +W
Sbjct: 325 YDLTAICDASEACVRALLGDELDPLSEEELERRPNPNAVTSLEKVIAIQSPYW 377
>gnl|CDD|212119 cd10808, YdjC, Escherichia coli YdjC-like family of proteins.
Uncharacterized subfamily of YdjC-like family of
proteins. Included in this subfamily is the
uncharacterized Escherichia coli protein YdjC (also
known as ChbG), encoded by the chb
(N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel
operon, which encodes enzymes involved in growth on an
N,N'-diacetylchitobiose carbon source. The molecular
function of this subfamily is unclear.
Length = 259
Score = 28.4 bits (64), Expect = 0.91
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 68 LQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
L + +I + I +R D P ++ K L + L V +
Sbjct: 134 LPGVLDIVLDLAARYGIPAVRIPDEPPFFARLAKSGLRRRAGVGLSVLAA 183
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like
deacetylases, classII. Class II histone deacetylases
are Zn-dependent enzymes that catalyze hydrolysis of
N(6)-acetyl-lysine residues of histones (EC 3.5.1.98)
and possibly other proteins to yield deacetylated
histones/other proteins. This group includes animal
HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and
HDA15 as well as other eukaryotes, archaeal and
bacterial histone-like deacetylases. Eukaryotic
deacetylases mostly use histones (H2, H3, H4) as
substrates for deacetylation; however, non-histone
substrates are known (for example, tubulin). Substrates
for prokaryotic histone-like deacetylases are not known.
Histone acetylation/deacetylation process is important
for mediation of transcriptional regulation of many
genes. Histone deacetylases usually act via association
with DNA binding proteins to target specific chromatin
regions. Interaction partners of class II deacetylases
include 14-3-3 proteins, MEF2 family of transcriptional
factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6,
HP1alpha and SUMO. Histone deacetylases play a role in
the regulation of cell cycle, cell differentiation and
survival. Class II mammalian HDACs are differentially
inhibited by structurally diverse compounds with known
antitumor activities, thus presenting them as potential
drug targets for human diseases resulting from aberrant
acetylation.
Length = 291
Score = 28.2 bits (64), Expect = 0.94
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 9 YNLRSISSSATSVIKVLL 26
YNL +++ S +V++ LL
Sbjct: 274 YNLEALAESVLAVLEALL 291
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones can
be reversibly acetylated on several lysine residues.
Regulation of transcription is caused in part by this
mechanism. Histone deacetylases catalyze the removal of
the acetyl group. Histone deacetylases are related to
other proteins.
Length = 300
Score = 27.2 bits (61), Expect = 2.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 9 YNLRSISSSATSVIKVLL 26
YNL +++ SA +V+ LL
Sbjct: 283 YNLDALARSAAAVLAGLL 300
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 27.0 bits (60), Expect = 3.0
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 48 LEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKW-----GRKR 102
L L W L +L +W + + KI I + G +
Sbjct: 631 LAALAQDEAEWEFLWENLRQLADIWRFRGVLAMWRALAKITPLHDLIAERLLSTNLGERD 690
Query: 103 LLYQ 106
L
Sbjct: 691 LTNG 694
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid
transport and metabolism].
Length = 338
Score = 26.8 bits (60), Expect = 3.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 35 GDSAPSKSGLVTVLEVLKIQMN 56
S SKSG VLE L + +
Sbjct: 113 NRSVSSKSGSADVLEALGVNLE 134
>gnl|CDD|193500 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica
aminopeptidase. Peptidase family M28; Aeromonas
(Vibrio) proteolytica aminopeptidase (AAP; leucine
aminopeptidase from Vibrio proteolyticus; Bacterial
leucyl aminopeptidase; E.C. 3.4.11.10) subfamily. AAP is
a small (32kDa), heat stable leucine aminopeptidase and
is active as a monomer. Similar forms of the enzyme have
been isolated from Escherichia coli and Staphylococcus
thermophilus. Leucine aminopeptidases, in general, play
important roles in many biological processes such as
protein catabolism, hormone degradation, regulation of
migration and cell proliferation, as well as HIV
infection and proliferation. AAP is a broad-specificity
enzyme, utilizing two zinc(II) ions in its active site
to remove N-terminal amino acids, with preference for
large hydrophobic amino acids in the P1 position of the
substrate, Leu being the most efficiently cleaved. It
can accommodate all residues, except Pro, Asp and Glu in
the P1' position.
Length = 285
Score = 26.4 bits (59), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 42 SGLVTVLEVLK--IQMNFWPSLASRFTELQSLWEIYAAE 78
SG+ T+LE L+ ++ F P ++ W YAAE
Sbjct: 118 SGIATILEALRVLLESGFQPK-----RTIEFHW--YAAE 149
>gnl|CDD|189007 cd09600, M1_APN_1, Peptidase M1 family containing Aminopeptidase N.
This family contains aminopeptidase N (APN; CD13;
Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral
membrane protease belonging to the M1 gluzincin family.
It includes bacterial-type alanyl aminopeptidases as
well as PfA-M1 aminopeptidase (Plasmodium
falciparum-type). APN consists of a small N-terminal
cytoplasmic domain, a single transmembrane domain and a
large extracellular ectodomain that contains the active
site. It preferentially cleaves neutral amino acids from
the N-terminus of oligopeptides and, in higher
eukaryotes, is present in a variety of human tissues and
cell types (leukocyte, fibroblast, endothelial and
epithelial cells). APN expression is dysregulated in
inflammatory diseases such as chronic pain, rheumatoid
arthritis, multiple sclerosis, systemic sclerosis,
systemic lupus erythematosus,
polymyositis/dermatomyosytis and pulmonary sarcoidosis,
and is enhanced in tumor cells such as melanoma, renal,
prostate, pancreas, colon, gastric and thyroid cancers.
It is predominantly expressed on stem cells and on cells
of the granulocytic and monocytic lineages at distinct
stages of differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 861
Score = 26.5 bits (59), Expect = 4.4
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 50 VLKI-QMNFWPSLASRFTELQSLWEIYAAENK---KKQIKKIRRAD 91
++K+ + N P +A+R E S W+ + K +++I A
Sbjct: 804 IIKLDKFN--PQVAARLVEAFSRWKKLDEPRQSLMKAALERILAAP 847
>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1). Arfrp1
(Arf-related protein 1), formerly known as ARP, is a
membrane-associated Arf family member that lacks the
N-terminal myristoylation motif. Arfrp1 is mainly
associated with the trans-Golgi compartment and the
trans-Golgi network, where it regulates the targeting
of Arl1 and the GRIP domain-containing proteins,
golgin-97 and golgin-245, onto Golgi membranes. It is
also involved in the anterograde transport of the
vesicular stomatitis virus G protein from the Golgi to
the plasma membrane, and in the retrograde transport of
TGN38 and Shiga toxin from endosomes to the trans-Golgi
network. Arfrp1 also inhibits Arf/Sec7-dependent
activation of phospholipase D. Deletion of Arfrp1 in
mice causes embryonic lethality at the gastrulation
stage and apoptosis of mesodermal cells, indicating its
importance in development.
Length = 168
Score = 26.2 bits (58), Expect = 4.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 49 EVLKIQMNFWPSLASRFTELQSLWEIYAAE 78
EV K ++ FW L + EL+SLW+ Y AE
Sbjct: 47 EVGKARLMFW-DLGGQ-EELRSLWDKYYAE 74
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 26.2 bits (58), Expect = 4.9
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 31 GCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRA 90
GC L A S L V +Q N L L L Y E + K ++
Sbjct: 211 GCALLGLAGSVPVGEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDK-QKP 269
Query: 91 DAPIW 95
D +W
Sbjct: 270 DLVVW 274
>gnl|CDD|236966 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.
Length = 697
Score = 25.9 bits (58), Expect = 5.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 48 LEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQI 84
LE L +++ R L LW + A E+++
Sbjct: 385 LERLLLELGRA---LGRLEALSKLWRLAAKEDQESGA 418
>gnl|CDD|149775 pfam08822, DUF1804, Protein of unknown function (DUF1804). This
family of bacterial protein is uncharacterized.
Length = 165
Score = 25.4 bits (56), Expect = 7.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 38 APSKSGLVTVLEVLKIQMNF----WPSLASRFTEL 68
P S L T LEVL+ +F +P F E+
Sbjct: 119 LPETSKLATALEVLQRLADFVQERYPQHLPAFAEI 153
>gnl|CDD|240777 cd12331, RRM_NRD1_SEB1_like, RNA recognition motif in
Saccharomyces cerevisiae protein Nrd1,
Schizosaccharomyces pombe Rpb7-binding protein seb1 and
similar proteins. This subfamily corresponds to the
RRM of Nrd1 and Seb1. Nrd1 is a novel heterogeneous
nuclear ribonucleoprotein (hnRNP)-like RNA-binding
protein encoded by gene NRD1 (for nuclear pre-mRNA
down-regulation) from yeast S. cerevisiae. It is
implicated in 3' end formation of small nucleolar and
small nuclear RNAs transcribed by polymerase II, and
plays a critical role in pre-mRNA metabolism. Nrd1
contains an RNA recognition motif (RRM), also termed
RBD (RNA binding domain) or RNP (ribonucleoprotein
domain), a short arginine-, serine-, and glutamate-rich
segment similar to the regions rich in RE and RS
dipeptides (RE/RS domains) in many metazoan splicing
factors, and a proline- and glutamine-rich C-terminal
domain (P+Q domain) similar to domains found in several
yeast hnRNPs. Disruption of NRD1 gene is lethal to
yeast cells. Its N-terminal domain is sufficient for
viability, which may facilitate interactions with RNA
polymerase II where Nrd1 may function as an auxiliary
factor. By contrast, the RRM, RE/RS domains, and P+Q
domain are dispensable. Seb1 is an RNA-binding protein
encoded by gene seb1 (for seven binding) from fission
yeast S. pombe. It is essential for cell viability and
bound directly to Rpb7 subunit of RNA polymerase II.
Seb1 is involved in processing of polymerase II
transcripts. It also contains one RRM motif and a
region rich in arginine-serine dipeptides (RS domain).
Length = 79
Score = 24.8 bits (54), Expect = 7.7
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 76 AAENKKKQIKKIRRADAPIWWKWG 99
AEN ++ +++ + D + +WG
Sbjct: 51 DAENAREAMEQYKSGDMQLRTRWG 74
>gnl|CDD|130696 TIGR01635, tail_comp_S, phage virion morphogenesis (putative tail
completion) protein. This model describes protein S of
phage P2, suggested experimentally to act in tail
completion and stable head joining, and related proteins
from a number of phage [Mobile and extrachromosomal
element functions, Prophage functions].
Length = 144
Score = 25.2 bits (55), Expect = 8.0
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 76 AAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLR 113
AA+ K I P W ++ + KG +
Sbjct: 30 AAQLASSTRKNIEAQQDPDGSAWAARKKKVRSKKGRIG 67
>gnl|CDD|221794 pfam12825, DUF3818, Domain of unknown function in PX-proteins
(DUF3818). This domain is found on proteins carrying a
PX domain. Its function is unknown.
Length = 340
Score = 25.3 bits (56), Expect = 9.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 62 ASRFTELQSLWEIYAAENKKKQIKKI 87
A ++ L+ L ++Y E K +KK+
Sbjct: 204 AELYSNLKQLLQLYLRERDKDLMKKL 229
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,794,025
Number of extensions: 474559
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 27
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)