BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033395
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FKK|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
pdb|3FKK|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase
Length = 309
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 43 NCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPD 87
N L EL+R GG ++ P+ + T L+DL A + FPD
Sbjct: 179 NKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATGAMTGGGFPD 223
>pdb|3FKR|A Chain A, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
With Pyruvate
pdb|3FKR|B Chain B, Structure Of L-2-Keto-3-Deoxyarabonate Dehydratase Complex
With Pyruvate
Length = 309
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 43 NCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPD 87
N L EL+R GG ++ P+ + T L+DL A + FPD
Sbjct: 179 NKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATGAMTGGGFPD 223
>pdb|2UZH|A Chain A, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|B Chain B, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|C Chain C, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
Length = 165
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 64 SLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKS 96
L T++ +EA +P LCLEF D GC S
Sbjct: 9 GLGTDVHPIEAGRPCRLLCLEFDDAD-GCAGHS 40
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 38 LDKEWNCLIELLRSGGLSLMEP-YTSKSLTTNL 69
+ +E CLIE LR +LM+P + +S+T N+
Sbjct: 127 IQEEAQCLIEELRKSKGALMDPTFLFQSITANI 159
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
Length = 149
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 33 TNVTELDKEWNCLIELLRSGGLSLME 58
T + EL ++W L+E +R G+ L++
Sbjct: 124 TRLMELHRQWELLLEKMREKGIKLLQ 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,984,945
Number of Sequences: 62578
Number of extensions: 89517
Number of successful extensions: 237
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)