Query 033395
Match_columns 120
No_of_seqs 103 out of 175
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbq_A Protein TA0487; structu 99.3 7.6E-13 2.6E-17 100.4 3.7 48 1-50 118-169 (172)
2 1uuy_A CNX1, molybdopterin bio 86.8 0.71 2.4E-05 33.3 4.1 39 11-51 115-157 (167)
3 3iwt_A 178AA long hypothetical 82.6 0.87 3E-05 32.8 2.9 24 27-51 147-171 (178)
4 2g2c_A Putative molybdenum cof 72.9 2.2 7.4E-05 30.7 2.6 25 26-51 135-159 (167)
5 2is8_A Molybdopterin biosynthe 70.9 2.6 8.8E-05 30.3 2.6 25 26-51 124-148 (164)
6 1y5e_A Molybdenum cofactor bio 58.2 5.8 0.0002 28.5 2.4 25 26-51 136-161 (169)
7 1mkz_A Molybdenum cofactor bio 55.5 7.3 0.00025 28.2 2.6 25 26-51 132-157 (172)
8 2pbq_A Molybdenum cofactor bio 52.5 10 0.00036 27.5 3.0 29 21-51 124-157 (178)
9 1jlj_A Gephyrin; globular alph 51.9 8.9 0.0003 28.4 2.6 24 27-51 141-164 (189)
10 2qsx_A Putative transcriptiona 38.6 16 0.00054 25.2 2.0 22 69-90 29-50 (218)
11 2wh6_B BCL-2-like protein 11; 36.2 10 0.00034 20.7 0.5 18 70-87 4-21 (26)
12 2bj7_A Nickel responsive regul 35.7 82 0.0028 22.0 5.4 43 68-110 63-108 (138)
13 3mwb_A Prephenate dehydratase; 32.7 67 0.0023 25.9 5.1 32 68-99 254-286 (313)
14 3hhg_A Transcriptional regulat 32.2 74 0.0025 22.5 4.8 23 70-92 104-126 (306)
15 2qmx_A Prephenate dehydratase; 32.0 24 0.00082 28.0 2.3 31 67-97 251-282 (283)
16 2ql3_A Probable transcriptiona 31.7 40 0.0014 22.3 3.1 15 78-92 47-61 (209)
17 3szp_A Transcriptional regulat 31.0 1.3E+02 0.0045 20.8 5.9 26 68-93 100-125 (291)
18 1q5y_A NIKR, nickel responsive 26.0 1.3E+02 0.0044 19.3 4.8 43 68-110 13-58 (85)
19 3jv9_A OXYR, transcriptional r 25.7 51 0.0017 21.6 2.8 28 71-98 39-66 (219)
20 3lab_A Putative KDPG (2-keto-3 25.3 1.7E+02 0.0059 22.3 6.1 54 27-92 16-69 (217)
21 2pmp_A 2-C-methyl-D-erythritol 25.2 88 0.003 23.3 4.2 46 20-72 90-139 (160)
22 1ynf_A Succinylarginine dihydr 25.1 8.5 0.00029 33.3 -1.5 41 60-100 408-455 (458)
23 2wvf_A Hpnikr, putative nickel 24.9 1.9E+02 0.0064 20.5 6.5 47 64-110 69-118 (148)
24 3hz8_A Thiol:disulfide interch 24.7 1.1E+02 0.0036 21.5 4.5 38 14-51 150-187 (193)
25 2r6h_A NADH:ubiquinone oxidore 24.3 1.5E+02 0.0051 21.7 5.4 57 27-90 160-218 (290)
26 2h9b_A HTH-type transcriptiona 24.3 68 0.0023 23.2 3.4 23 69-91 100-122 (312)
27 1wzu_A Quinolinate synthetase 24.0 1.2E+02 0.0041 24.5 5.1 61 26-97 51-113 (300)
28 3rfq_A Pterin-4-alpha-carbinol 23.2 58 0.002 24.1 2.9 24 27-51 153-176 (185)
29 1ixc_A CBNR, LYSR-type regulat 22.9 1.9E+02 0.0066 20.1 5.6 24 69-92 101-124 (294)
30 2rem_A Disulfide oxidoreductas 22.6 1.3E+02 0.0044 20.4 4.5 36 15-50 152-187 (193)
31 3fzv_A Probable transcriptiona 22.3 1.3E+02 0.0046 21.1 4.6 23 69-91 105-127 (306)
32 2h98_A HTH-type transcriptiona 22.3 81 0.0028 23.1 3.6 24 69-92 100-123 (313)
33 3luy_A Probable chorismate mut 22.1 60 0.0021 26.3 3.0 29 69-97 261-290 (329)
34 1qfj_A Protein (flavin reducta 21.8 2.1E+02 0.0073 20.0 7.1 56 27-90 106-163 (232)
35 1iv3_A 2-C-methyl-D-erythritol 21.5 86 0.0029 23.2 3.5 46 20-72 87-136 (152)
36 1pq1_B BCL2-like protein 11; B 21.4 24 0.00082 20.2 0.3 23 69-95 3-25 (33)
37 1t0a_A 2C-methyl-D-erythritol 21.4 1E+02 0.0035 23.0 3.9 46 20-72 89-138 (159)
38 4ab5_A Transcriptional regulat 21.1 70 0.0024 21.0 2.7 27 72-98 44-70 (222)
39 3kos_A HTH-type transcriptiona 21.1 47 0.0016 22.1 1.9 8 86-93 59-66 (219)
40 2kt9_A Probable 30S ribosomal 20.9 38 0.0013 24.3 1.4 45 41-92 47-107 (116)
41 3onm_A Transcriptional regulat 20.9 44 0.0015 22.9 1.7 19 76-94 67-85 (238)
42 3f0d_A 2-C-methyl-D-erythritol 20.7 1.2E+02 0.0041 23.2 4.2 47 19-72 109-159 (183)
43 3hxa_A Pterin-4-alpha-carbinol 20.7 1.6E+02 0.0055 19.7 4.6 67 39-111 10-83 (104)
44 1gx1_A 2-C-methyl-D-erythritol 20.4 97 0.0033 23.1 3.6 46 20-72 88-137 (160)
45 2fts_A Gephyrin; gephyrin, neu 20.1 72 0.0025 26.3 3.1 24 27-51 304-328 (419)
No 1
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.31 E-value=7.6e-13 Score=100.40 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=43.2
Q ss_pred CCCCCCcccccccCCCCCCCeeEEC----cEEEecCCChhHHHHHHHHHHHHHH
Q 033395 1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTELDKEWNCLIELLR 50 (120)
Q Consensus 1 MAriPeGaa~LI~npvs~APGf~i~----NV~VmAGvpvP~i~aMl~~l~p~L~ 50 (120)
||.+|+|| ++|+||+..||||.++ |||+|||||. +|+.||+.+.|+|.
T Consensus 118 ~A~~P~ga-~~l~N~~g~apG~~~~~~~~~v~~lPGvP~-e~~~m~~~~~~~~~ 169 (172)
T 3kbq_A 118 MAKIPPSC-RPIENPVGTAPGLICAVGGKKVIILPGVPK-EMEALLKAMEKDII 169 (172)
T ss_dssp GGEECTTE-EEECCSSSSSCEEEEEETTEEEEEECSSHH-HHHHHHHHTHHHHC
T ss_pred hccCCCCC-EECcCCCCcCCeEEEEECCeEEEEeCCCHH-HHHHHHHHHHhhcC
Confidence 89999995 8999999999999998 8999999555 57899999999974
No 2
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=86.77 E-value=0.71 Score=33.28 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=27.7
Q ss_pred cccCCCC--CCCeeEECc--EEEecCCChhHHHHHHHHHHHHHHh
Q 033395 11 LLHHDKL--LLPLIKCQN--VIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 11 LI~npvs--~APGf~i~N--V~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
..+|... .++|+ ++| ||.|||.|+ ....||+.++|.|+.
T Consensus 115 ~~Pg~~~sr~~~G~-~~~~~v~~LPG~P~-s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 115 ITPFAMLARSAAGI-RGSTLIINMPGNPN-AVAECMEALLPALKH 157 (167)
T ss_dssp HCGGGGGCCCCEEE-ETTEEEEEECSSTT-HHHHHHHHHHHHHHH
T ss_pred cCCCCcccceeEEE-ECCEEEEECCCCHH-HHHHHHHHHHHHHHH
Confidence 3444432 47787 466 899999777 677788888888754
No 3
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=82.60 E-value=0.87 Score=32.76 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=18.3
Q ss_pred EEEecCCChhHHHHHHH-HHHHHHHh
Q 033395 27 VIILTATNVTELDKEWN-CLIELLRS 51 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~-~l~p~L~~ 51 (120)
||.|||+|+ .++.||+ -|.|.|+-
T Consensus 147 i~~LPG~P~-~~~~~~~~~v~P~L~h 171 (178)
T 3iwt_A 147 VYLLPGSPD-AVKLALKELILPEVGH 171 (178)
T ss_dssp EEEECSCHH-HHHHHHHHTHHHHHHH
T ss_pred EEECCCCHH-HHHHHHHHHHHHHHHH
Confidence 788999666 6788886 47888753
No 4
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=72.87 E-value=2.2 Score=30.75 Aligned_cols=25 Identities=4% Similarity=0.280 Sum_probs=19.8
Q ss_pred cEEEecCCChhHHHHHHHHHHHHHHh
Q 033395 26 NVIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 26 NV~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
.||.|||.|+ .++.||+.+.|.|+.
T Consensus 135 ~v~~LPG~P~-~~~~~~~~v~P~L~~ 159 (167)
T 2g2c_A 135 LIVNAPSSSG-GITDTWAVISPVIPN 159 (167)
T ss_dssp EEEEECSSHH-HHHHHHHHHGGGHHH
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHH
Confidence 4999999555 578899988888764
No 5
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=70.91 E-value=2.6 Score=30.27 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=19.6
Q ss_pred cEEEecCCChhHHHHHHHHHHHHHHh
Q 033395 26 NVIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 26 NV~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
.||.|||.|+ ..+.||+.+.|.|+.
T Consensus 124 ~v~~LPG~P~-~~~~~~~~v~p~l~~ 148 (164)
T 2is8_A 124 LILNLPGSPK-GARESLEAVLPVLPH 148 (164)
T ss_dssp EEEEECSSHH-HHHHHHHHHGGGHHH
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHH
Confidence 5999999555 467788889888764
No 6
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=58.25 E-value=5.8 Score=28.49 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=18.4
Q ss_pred cEEEecCCChhHHHHHHH-HHHHHHHh
Q 033395 26 NVIILTATNVTELDKEWN-CLIELLRS 51 (120)
Q Consensus 26 NV~VmAGvpvP~i~aMl~-~l~p~L~~ 51 (120)
.||.|||.|+ ..+.|++ .+.|.|+.
T Consensus 136 ~v~~LPG~P~-~~~~~~~~~v~p~L~~ 161 (169)
T 1y5e_A 136 VVFSMPGSSG-AVRLAMNKLILPELGH 161 (169)
T ss_dssp EEEEECSSHH-HHHHHHHHTHHHHHHH
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHHH
Confidence 5899999555 4677777 67787753
No 7
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=55.54 E-value=7.3 Score=28.17 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=19.0
Q ss_pred cEEEecCCChhHHHHHHHH-HHHHHHh
Q 033395 26 NVIILTATNVTELDKEWNC-LIELLRS 51 (120)
Q Consensus 26 NV~VmAGvpvP~i~aMl~~-l~p~L~~ 51 (120)
.||.|||.|+ .++.||+. +.|.|+.
T Consensus 132 ~v~~LPG~P~-~~~~~~~~~v~p~L~~ 157 (172)
T 1mkz_A 132 LILAMPGSTK-ACRTAWENIIAPQLDA 157 (172)
T ss_dssp EEEEECSSHH-HHHHHHHHTHHHHHCT
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHhh
Confidence 4999999555 56778886 6798864
No 8
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=52.45 E-value=10 Score=27.49 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=20.9
Q ss_pred eeEECc--EEEecCCChhHHHHHHHHH---HHHHHh
Q 033395 21 LIKCQN--VIILTATNVTELDKEWNCL---IELLRS 51 (120)
Q Consensus 21 Gf~i~N--V~VmAGvpvP~i~aMl~~l---~p~L~~ 51 (120)
|+ ++| ||.|||.|+ .++.||+.+ +|.|..
T Consensus 124 g~-~~~~~v~~LPG~P~-~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 124 GI-RGSCLIVNLPGKPQ-SIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp EE-ETTEEEEEECSSHH-HHHHHHHHHGGGHHHHHH
T ss_pred ee-ECCEEEEECCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 55 453 889999555 577799987 677654
No 9
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=51.87 E-value=8.9 Score=28.36 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=18.3
Q ss_pred EEEecCCChhHHHHHHHHHHHHHHh
Q 033395 27 VIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
||.|||.|+ ....||+-+.|.|+.
T Consensus 141 v~~LPG~P~-s~~~~~~~v~P~L~~ 164 (189)
T 1jlj_A 141 IINLPGSKK-GSQECFQFILPALPH 164 (189)
T ss_dssp EEEECSSHH-HHHHHHHHHGGGHHH
T ss_pred EEECCCCHH-HHHHHHHHHHHHHHH
Confidence 677999665 467788888888755
No 10
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=38.58 E-value=16 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCchhhhhhHHHHHHhCCCcee
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHI 90 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~I 90 (120)
+...-+...|.+.+++||++.|
T Consensus 29 ~~~~~L~~~l~~f~~~~P~i~l 50 (218)
T 2qsx_A 29 FASLWLVPNINDFHQRHPNIRV 50 (218)
T ss_dssp HHHHTHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEE
Confidence 4667788899999999999775
No 11
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=36.18 E-value=10 Score=20.74 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.1
Q ss_pred CchhhhhhHHHHHHhCCC
Q 033395 70 SDLEAAQPLSKLCLEFPD 87 (120)
Q Consensus 70 ~Eg~IA~~L~~i~~~~pd 87 (120)
+|--||+.|++|-++|-.
T Consensus 4 PE~~iAqELRRIGDeFN~ 21 (26)
T 2wh6_B 4 PEIWIAQELRRIGDEFNA 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhHHHhh
Confidence 688899999999999876
No 12
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=35.66 E-value=82 Score=21.95 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=33.0
Q ss_pred cCCchhhhhhHHHHHHhCCCceeeecccccCCCeEE---EEeeecc
Q 033395 68 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLII---SFEGKVK 110 (120)
Q Consensus 68 ~~~Eg~IA~~L~~i~~~~pdv~IGSYP~~~~g~~~~---V~rg~D~ 110 (120)
+-.+.++++.|.+||.+|-|+-+++.=..-+....+ ++||.-.
T Consensus 63 dh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~ 108 (138)
T 2bj7_A 63 NHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAK 108 (138)
T ss_dssp ETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHH
T ss_pred cCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHH
Confidence 345678999999999999999999966654444444 8898743
No 13
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=32.68 E-value=67 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.7
Q ss_pred cCCchhhhhhHHHHHHhCCCcee-eecccccCC
Q 033395 68 NLSDLEAAQPLSKLCLEFPDLHI-GCYRKSRQG 99 (120)
Q Consensus 68 ~~~Eg~IA~~L~~i~~~~pdv~I-GSYP~~~~g 99 (120)
...|-.+.+.|.+|+..-..+.| ||||.....
T Consensus 254 ~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~~ 286 (313)
T 3mwb_A 254 HATDSRVADALAGLHRISPATRFLGSYARADKQ 286 (313)
T ss_dssp CTTSHHHHHHHHHHHHHCTTCEEEEEEECTTCC
T ss_pred CCCcHHHHHHHHHHHHhcCcEEEEeeeecCccC
Confidence 34667789999999998888775 999997643
No 14
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=32.15 E-value=74 Score=22.53 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=17.6
Q ss_pred CchhhhhhHHHHHHhCCCceeee
Q 033395 70 SDLEAAQPLSKLCLEFPDLHIGC 92 (120)
Q Consensus 70 ~Eg~IA~~L~~i~~~~pdv~IGS 92 (120)
...-+...|.+++++||++.|=-
T Consensus 104 ~~~~l~~~l~~f~~~~P~v~i~l 126 (306)
T 3hhg_A 104 VLHLLAPLAAKFNERYPHIRLSL 126 (306)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE
Confidence 44567788899999999887644
No 15
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=31.99 E-value=24 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=23.8
Q ss_pred ecCCchhhhhhHHHHHHhCCCcee-eeccccc
Q 033395 67 TNLSDLEAAQPLSKLCLEFPDLHI-GCYRKSR 97 (120)
Q Consensus 67 ~~~~Eg~IA~~L~~i~~~~pdv~I-GSYP~~~ 97 (120)
....|..+.+.|.+|+..-.++.| ||||...
T Consensus 251 g~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 282 (283)
T 2qmx_A 251 GHREDQNVHNALENLREFATMVKVLGSYGVVN 282 (283)
T ss_dssp SCTTSHHHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred cCCCcHHHHHHHHHHHHhcCeEEEeeeeeCCC
Confidence 345667789999999988777664 9999753
No 16
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=31.67 E-value=40 Score=22.31 Aligned_cols=15 Identities=20% Similarity=-0.079 Sum_probs=6.3
Q ss_pred HHHHHHhCCCceeee
Q 033395 78 LSKLCLEFPDLHIGC 92 (120)
Q Consensus 78 L~~i~~~~pdv~IGS 92 (120)
+..+.+.-=|+-|..
T Consensus 47 ~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 47 RTQLEGGELDVAIVY 61 (209)
T ss_dssp HHHHHTTSCSEEEEE
T ss_pred HHHHHcCCccEEEEe
Confidence 334444444444443
No 17
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=31.00 E-value=1.3e+02 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.7
Q ss_pred cCCchhhhhhHHHHHHhCCCceeeec
Q 033395 68 NLSDLEAAQPLSKLCLEFPDLHIGCY 93 (120)
Q Consensus 68 ~~~Eg~IA~~L~~i~~~~pdv~IGSY 93 (120)
.....-+...|.+++++||++.|=-.
T Consensus 100 ~~~~~~l~~~l~~f~~~~P~v~i~~~ 125 (291)
T 3szp_A 100 NLTKRMMMPMFNAFMEKYPDIHIELM 125 (291)
T ss_dssp TTHHHHTHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34667788999999999999987544
No 18
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=25.97 E-value=1.3e+02 Score=19.28 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=31.6
Q ss_pred cCCchhhhhhHHHHHHhCCCceeeecccccCCCeEE---EEeeecc
Q 033395 68 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLII---SFEGKVK 110 (120)
Q Consensus 68 ~~~Eg~IA~~L~~i~~~~pdv~IGSYP~~~~g~~~~---V~rg~D~ 110 (120)
+-...++++.|.+||.+|-|+-+++-=..-+....+ ++||.-.
T Consensus 13 dh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~ 58 (85)
T 1q5y_A 13 EHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMG 58 (85)
T ss_dssp ETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHH
T ss_pred eCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHH
Confidence 344578999999999999999998854443444444 8888754
No 19
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=25.66 E-value=51 Score=21.61 Aligned_cols=28 Identities=11% Similarity=-0.218 Sum_probs=18.4
Q ss_pred chhhhhhHHHHHHhCCCceeeecccccC
Q 033395 71 DLEAAQPLSKLCLEFPDLHIGCYRKSRQ 98 (120)
Q Consensus 71 Eg~IA~~L~~i~~~~pdv~IGSYP~~~~ 98 (120)
++.-.+.+..+.+.-=|+-|+..|...+
T Consensus 39 ~~~~~~~~~~l~~g~~Dl~i~~~~~~~~ 66 (219)
T 3jv9_A 39 ENYTHTLTESLKRGDVDAIIVAEPFQEP 66 (219)
T ss_dssp EECHHHHHHHHHHTSSSEEEEESSCCCT
T ss_pred eCCcHHHHHHHHcCCCCEEEEcCCCCCC
Confidence 3444456777777778888887765443
No 20
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=25.26 E-value=1.7e+02 Score=22.32 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=35.5
Q ss_pred EEEecCCChhHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCchhhhhhHHHHHHhCCCceeee
Q 033395 27 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGC 92 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg~IA~~L~~i~~~~pdv~IGS 92 (120)
|=|+-+........|.+.+.. | |.+.+..|+++.. -.+.++++.++||++-||-
T Consensus 16 i~Vir~~~~~~a~~~a~al~~----g----Gi~~iEvt~~t~~----a~~~I~~l~~~~p~~~IGA 69 (217)
T 3lab_A 16 IPVIVIDDLVHAIPMAKALVA----G----GVHLLEVTLRTEA----GLAAISAIKKAVPEAIVGA 69 (217)
T ss_dssp EEEECCSCGGGHHHHHHHHHH----T----TCCEEEEETTSTT----HHHHHHHHHHHCTTSEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHH----c----CCCEEEEeCCCcc----HHHHHHHHHHHCCCCeEee
Confidence 446666545345556666654 3 5887777665432 3356788999999999986
No 21
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=25.24 E-value=88 Score=23.35 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=30.9
Q ss_pred CeeEECcEE--EecCCCh--hHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCch
Q 033395 20 PLIKCQNVI--ILTATNV--TELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 72 (120)
Q Consensus 20 PGf~i~NV~--VmAGvpv--P~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg 72 (120)
-||+|+||= |.+=-|. |.+.+|-++|...| |.+.-..+|.++..|+
T Consensus 90 ~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L-------~~~~~~V~vKAtT~E~ 139 (160)
T 2pmp_A 90 AGYEIGNLDATLILQRPKISPHKETIRSNLSKLL-------GADPSVVNLKAKTHEK 139 (160)
T ss_dssp HTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHH-------TCCGGGEEEEEECCTT
T ss_pred cCCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHH-------CCCcceEEEEEecCCC
Confidence 489999974 5666443 55688999999887 3554445555555554
No 22
>1ynf_A Succinylarginine dihydrolase; 1.90A {Escherichia coli} SCOP: d.126.1.7 PDB: 1ynh_A* 1yni_A*
Probab=25.07 E-value=8.5 Score=33.29 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=24.9
Q ss_pred eEEEEEEecCCchhhhhh--HHHHHHhCCCc----eeee-cccccCCC
Q 033395 60 YTSKSLTTNLSDLEAAQP--LSKLCLEFPDL----HIGC-YRKSRQGP 100 (120)
Q Consensus 60 ~~S~tv~~~~~Eg~IA~~--L~~i~~~~pdv----~IGS-YP~~~~g~ 100 (120)
++.+..+-.+.+-|+|+| |.+...+..++ .+|| |||+++|+
T Consensus 408 wV~~hYRd~L~~~DLaDP~Ll~E~r~ALdeLTqiL~LGsvY~FQ~~~~ 455 (458)
T 1ynf_A 408 WVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGG 455 (458)
T ss_dssp HHHHHCCSCBCGGGGGCHHHHHHHHHHHHHHHHHTTCCSCSGGGC---
T ss_pred HHHHhccccCChhhccCHHHHHHHHHHHHHHHHHhcccccChhhhccC
Confidence 666777777778888876 44444444433 3665 99999764
No 23
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=24.87 E-value=1.9e+02 Score=20.51 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=34.1
Q ss_pred EEEecCCchhhhhhHHHHHHhCCCceeeecccccCCCeEE---EEeeecc
Q 033395 64 SLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLII---SFEGKVK 110 (120)
Q Consensus 64 tv~~~~~Eg~IA~~L~~i~~~~pdv~IGSYP~~~~g~~~~---V~rg~D~ 110 (120)
++-.+-...+++..|.+||.+|-|+-+++.=..-+....+ ++||.-.
T Consensus 69 ~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~ 118 (148)
T 2wvf_A 69 VVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSF 118 (148)
T ss_dssp EEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHH
T ss_pred EEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHH
Confidence 3333445578999999999999999999966654444444 8898743
No 24
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=24.68 E-value=1.1e+02 Score=21.55 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=28.0
Q ss_pred CCCCCCCeeEECcEEEecCCChhHHHHHHHHHHHHHHh
Q 033395 14 HDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 14 npvs~APGf~i~NV~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
.-+++.|-|.+++-++.-|.|...+.+.++.++...+.
T Consensus 150 ~gv~gtPt~vvng~~~~~~~~~e~l~~~i~~ll~k~r~ 187 (193)
T 3hz8_A 150 FQIDGVPTVIVGGKYKVEFADWESGMNTIDLLADKVRE 187 (193)
T ss_dssp TTCCSSSEEEETTTEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCcCCEEEECCEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999988887776554567777777766443
No 25
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=24.32 E-value=1.5e+02 Score=21.69 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=30.9
Q ss_pred EEEecCCChhHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCchh--hhhhHHHHHHhCCCcee
Q 033395 27 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLE--AAQPLSKLCLEFPDLHI 90 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg~--IA~~L~~i~~~~pdv~I 90 (120)
|+|=.|+=++-+.+|+..++..... +.++.- +.....+.+ ..+.|.++++++|++.+
T Consensus 160 vliagGtGitP~~s~l~~~~~~~~~-----~~~v~l--~~~~r~~~d~~~~~el~~l~~~~~~~~~ 218 (290)
T 2r6h_A 160 LYIGGGAGMAPLRAQILHLFRTLKT-----GRKVSY--WYGARSKNEIFYEEDFREIEREFPNFKF 218 (290)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTSCC-----CSCEEE--EEEESSGGGCCSHHHHHHHHHHCTTEEE
T ss_pred EEEECccCHHHHHHHHHHHHHhcCC-----CCcEEE--EEEcCCHHHHHHHHHHHHHHHhCCCeEE
Confidence 3444443344466677766543211 233321 223333344 45789999999988765
No 26
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=24.27 E-value=68 Score=23.24 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=16.5
Q ss_pred CCchhhhhhHHHHHHhCCCceee
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHIG 91 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~IG 91 (120)
....-+...|.+++++||++.|=
T Consensus 100 ~~~~~l~~~l~~f~~~~P~v~i~ 122 (312)
T 2h9b_A 100 LLFGLLPRIIHLYRQAHPNLRIE 122 (312)
T ss_dssp GGGTTHHHHHHHHHHTCTTCEEE
T ss_pred hhHhhHHHHHHHHHHHCCCcEEE
Confidence 34556777788888888887654
No 27
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=23.96 E-value=1.2e+02 Score=24.49 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred cEEEecCCChhHHHHHHHHHHHHHHhCCCcCCCceEEEE--EEecCCchhhhhhHHHHHHhCCCceeeeccccc
Q 033395 26 NVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKS--LTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSR 97 (120)
Q Consensus 26 NV~VmAGvpvP~i~aMl~~l~p~L~~G~L~~G~p~~S~t--v~~~~~Eg~IA~~L~~i~~~~pdv~IGSYP~~~ 97 (120)
.++|+.| | .+.+....++- + .+.++--. =.|.+-|+-=++.+.++.++|||..+=+||-..
T Consensus 51 ~~IvF~g--v-~FMaetakil~----p----~k~Vl~pd~~a~C~~a~~~~~e~v~~~k~~~Pda~vV~y~n~s 113 (300)
T 1wzu_A 51 DVIVFAG--V-DFMAETAKILN----P----DKVVLIPSREATCAMANMLKVEHILEAKRKYPNAPVVLYVNST 113 (300)
T ss_dssp SEEEEES--C-HHHHHHHHHHC----T----TSEEECCC------------CHHHHHHHHHSTTSCEEEESSSC
T ss_pred CEEEEeC--c-chHHHHHHHhC----C----CCEEECCCCCCCcccccCCCHHHHHHHHHHCCCCeEEEecCCh
Confidence 5789999 8 65554443321 1 13333222 347788888899999999999999999999866
No 28
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.18 E-value=58 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=17.3
Q ss_pred EEEecCCChhHHHHHHHHHHHHHHh
Q 033395 27 VIILTATNVTELDKEWNCLIELLRS 51 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~~l~p~L~~ 51 (120)
||-|||-|+ ....+|+-+.|.|+.
T Consensus 153 V~~LPGnP~-aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 153 VVNLAGSRY-AVRDGMATLNPLAAH 176 (185)
T ss_dssp EEEECSSHH-HHHHHHHHHHHHHHH
T ss_pred EEECCCCHH-HHHHHHHHHHHHHHH
Confidence 788999555 456677778887653
No 29
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=22.88 E-value=1.9e+02 Score=20.13 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=17.5
Q ss_pred CCchhhhhhHHHHHHhCCCceeee
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHIGC 92 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~IGS 92 (120)
....-+...|.+++++||++.|=-
T Consensus 101 ~~~~~l~~~l~~f~~~~P~i~l~~ 124 (294)
T 1ixc_A 101 PIYRSLPLLLRAFLTSTPTATVSL 124 (294)
T ss_dssp GGGTHHHHHHHHHHHHCTTEEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCcEEEE
Confidence 455667788888888888876643
No 30
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=22.60 E-value=1.3e+02 Score=20.37 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCCCCCeeEECcEEEecCCChhHHHHHHHHHHHHHH
Q 033395 15 DKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLR 50 (120)
Q Consensus 15 pvs~APGf~i~NV~VmAGvpvP~i~aMl~~l~p~L~ 50 (120)
-+++.|-|.|++.++..|.+...+.+.++.++...+
T Consensus 152 gv~gtPt~ving~~~~~g~~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 152 RPVGTPTIVVNGRYMVTGHDFEDTLRITDYLVSRER 187 (193)
T ss_dssp CCSSSSEEEETTTEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEECCEEEecCCCHHHHHHHHHHHHHHHH
Confidence 578999999988877788644446777777765543
No 31
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=22.28 E-value=1.3e+02 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCchhhhhhHHHHHHhCCCceee
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHIG 91 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~IG 91 (120)
....-+...|.+++++||++.|=
T Consensus 105 ~~~~~l~~~l~~f~~~~P~i~i~ 127 (306)
T 3fzv_A 105 VAPLYLPGLIAGFRQAYPGVEIR 127 (306)
T ss_dssp GHHHHHHHHHHHHHHHCTTEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCeEEE
Confidence 45556777888888899988764
No 32
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=22.26 E-value=81 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=17.8
Q ss_pred CCchhhhhhHHHHHHhCCCceeee
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHIGC 92 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~IGS 92 (120)
+...-+...|.+++++||++.|=-
T Consensus 100 ~~~~~l~~~l~~f~~~~P~v~l~l 123 (313)
T 2h98_A 100 LLYGLLPEIIYLFRQQNPEIHIEL 123 (313)
T ss_dssp GGGTTHHHHHHHHHHHCTTSEEEE
T ss_pred hHHhHHHHHHHHHHHHCCCeEEEE
Confidence 455667888888888898877643
No 33
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=22.05 E-value=60 Score=26.31 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=23.3
Q ss_pred CCchhhhhhHHHHHHhCCCcee-eeccccc
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHI-GCYRKSR 97 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~I-GSYP~~~ 97 (120)
..|..+.+.|.+|+..-..+.| ||||...
T Consensus 261 ~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~ 290 (329)
T 3luy_A 261 PWEERFRDALVEIAEHGDWAKTLAVYPRRE 290 (329)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEEEEECCC
T ss_pred cCCHHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence 3556788999999988777764 9999865
No 34
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=21.80 E-value=2.1e+02 Score=20.05 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=32.4
Q ss_pred EEEecCCChhHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCchhh--hhhHHHHHHhCCCcee
Q 033395 27 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEA--AQPLSKLCLEFPDLHI 90 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg~I--A~~L~~i~~~~pdv~I 90 (120)
|+|=.|+=++-+.+|++.+... + ...++.- +.....+.++ .+.|.++++++|++.+
T Consensus 106 vliagG~GitP~~~~l~~l~~~---~---~~~~v~l--~~~~r~~~~~~~~~el~~l~~~~~~~~~ 163 (232)
T 1qfj_A 106 ILIAGGTGFSYARSILLTALAR---N---PNRDITI--YWGGREEQHLYDLCELEALSLKHPGLQV 163 (232)
T ss_dssp EEEEETTCHHHHHHHHHHHHHH---C---TTCCEEE--EEEESSGGGCTTHHHHHHHHHHCTTEEE
T ss_pred EEEEecccHhHHHHHHHHHHhc---C---CCCcEEE--EEeeCCHHHhhhHHHHHHHHHHCCCeEE
Confidence 4444555566677788887653 1 0122321 2233334444 5789999999998765
No 35
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=21.53 E-value=86 Score=23.21 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=29.9
Q ss_pred CeeEECcE--EEecCCCh--hHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCch
Q 033395 20 PLIKCQNV--IILTATNV--TELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 72 (120)
Q Consensus 20 PGf~i~NV--~VmAGvpv--P~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg 72 (120)
-||+|+|| -|.+=-|. |.+.+|-++|...| |.+.-..+|.++..|+
T Consensus 87 ~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L-------~~~~~~V~vKAtT~E~ 136 (152)
T 1iv3_A 87 RGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLM-------RLPQDRIGLTFKTSEG 136 (152)
T ss_dssp TTCCEEEEEEEEECSSSCCGGGHHHHHHHHHHHH-------TCCGGGEEEEEECCTT
T ss_pred cCCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHh-------CCCCceEEEEEecCCC
Confidence 48999997 45666443 55688999999887 3554344555544443
No 36
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=21.40 E-value=24 Score=20.20 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.4
Q ss_pred CCchhhhhhHHHHHHhCCCceeeeccc
Q 033395 69 LSDLEAAQPLSKLCLEFPDLHIGCYRK 95 (120)
Q Consensus 69 ~~Eg~IA~~L~~i~~~~pdv~IGSYP~ 95 (120)
.+|--||+.|++|-++|-. .||.
T Consensus 3 rPEiwIAQELRRIGDeFNa----~ypR 25 (33)
T 1pq1_B 3 RPEIRIAQELRRIGDEFNE----TYTR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred ChHHHHHHHHHHHhHHhhc----ccch
Confidence 4788899999999999854 5554
No 37
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=21.40 E-value=1e+02 Score=22.97 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=30.6
Q ss_pred CeeEECcE--EEecCCCh--hHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCch
Q 033395 20 PLIKCQNV--IILTATNV--TELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 72 (120)
Q Consensus 20 PGf~i~NV--~VmAGvpv--P~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg 72 (120)
-||+|+|| -|.+=-|. |.+.+|-++|...| |.+.-..+|.++..|+
T Consensus 89 ~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L-------~~~~~~V~vKAtT~E~ 138 (159)
T 1t0a_A 89 KGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADL-------NADVADINVKATTTEK 138 (159)
T ss_dssp TTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHT-------TCCGGGEEEEEECCTT
T ss_pred cCCEEEEEEEEEEcCCCcChHHHHHHHHHHHHHh-------CCCCceEEEEEecCCC
Confidence 48999997 45666443 55688999999886 3554445555555553
No 38
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=21.14 E-value=70 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHHhCCCceeeecccccC
Q 033395 72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ 98 (120)
Q Consensus 72 g~IA~~L~~i~~~~pdv~IGSYP~~~~ 98 (120)
+.-.+.+..+.+.-=|+-|...|...+
T Consensus 44 ~~~~~~~~~l~~g~~Di~i~~~~~~~~ 70 (222)
T 4ab5_A 44 GFQADPVGLLLQHRADLAIVSEAEKQN 70 (222)
T ss_dssp CCCSCTHHHHHTTSCSEEEESCCCCCT
T ss_pred CCHHHHHHHHHcCCcCEEEecCCCCcC
Confidence 333455677777777888877665443
No 39
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=21.10 E-value=47 Score=22.12 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=3.4
Q ss_pred CCceeeec
Q 033395 86 PDLHIGCY 93 (120)
Q Consensus 86 pdv~IGSY 93 (120)
=|+-|...
T Consensus 59 ~Dl~i~~~ 66 (219)
T 3kos_A 59 LDYTIRYG 66 (219)
T ss_dssp CSEEEEEE
T ss_pred ccEEEEeC
Confidence 44444433
No 40
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=20.89 E-value=38 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCcCCCceEEEEEEecC-----------C----chhhhhhHHHHHHhCCCce-eee
Q 033395 41 EWNCLIELLRSGGLSLMEPYTSKSLTTNL-----------S----DLEAAQPLSKLCLEFPDLH-IGC 92 (120)
Q Consensus 41 Ml~~l~p~L~~G~L~~G~p~~S~tv~~~~-----------~----Eg~IA~~L~~i~~~~pdv~-IGS 92 (120)
-|+.|...|++ +|.+|+.=+..+ - |+. -.++.++|.+||||. .||
T Consensus 47 AWe~LK~eLEs------K~WIse~e~i~lLN~~TeiIN~WQe~~~~~k-~~~~~eaq~kFPdv~F~G~ 107 (116)
T 2kt9_A 47 AWQQLKDELEA------KHWIAEADRINVLNQATEVINFWQDLKNQNK-QISMAEAQGKFPEVVFSGS 107 (116)
T ss_dssp HHHHHHHHHHH------STTSCHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCHHHHHTTCTTCEEEET
T ss_pred HHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHhhhhccc-cCCHHHHHhhCCCeEEecc
Confidence 57777777776 777776422211 1 344 466999999999998 455
No 41
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=20.87 E-value=44 Score=22.90 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=8.8
Q ss_pred hhHHHHHHhCCCceeeecc
Q 033395 76 QPLSKLCLEFPDLHIGCYR 94 (120)
Q Consensus 76 ~~L~~i~~~~pdv~IGSYP 94 (120)
+.+..+.+.-=|+-|...|
T Consensus 67 ~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 67 FIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp HHHHHHHHTSCSEEEECSC
T ss_pred HHHHHHHCCCccEEEEecC
Confidence 3344444444455554443
No 42
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=20.71 E-value=1.2e+02 Score=23.16 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=30.5
Q ss_pred CCeeEECcE--EEecCCCh--hHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCch
Q 033395 19 LPLIKCQNV--IILTATNV--TELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 72 (120)
Q Consensus 19 APGf~i~NV--~VmAGvpv--P~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg 72 (120)
.-||+|+|| -|.+=-|. |.+.+|-++|...| |.+.-..+|.++..|+
T Consensus 109 ~~G~~I~NvD~tIiaq~PKl~p~~~~mr~~la~~L-------~i~~~~VnVKATT~E~ 159 (183)
T 3f0d_A 109 QAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADL-------DLPLDRVNVKAKTNEK 159 (183)
T ss_dssp HTTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHH-------TCCGGGEEEEEECCTT
T ss_pred HcCCEEEEEEEEEEcCCCcchhHHHHHHHHHHHHH-------CCCcceEEEEEecCCC
Confidence 359999997 45666443 55688999999887 3454344555554443
No 43
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=20.68 E-value=1.6e+02 Score=19.71 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCC--CcCCCceEEEEEEec-CCchh-hh---hhHHHHHHhCCCceeeecccccCCCeEEEEeeeccc
Q 033395 39 DKEWNCLIELLRSGG--LSLMEPYTSKSLTTN-LSDLE-AA---QPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKVKD 111 (120)
Q Consensus 39 ~aMl~~l~p~L~~G~--L~~G~p~~S~tv~~~-~~Eg~-IA---~~L~~i~~~~pdv~IGSYP~~~~g~~~~V~rg~D~~ 111 (120)
+...+..+..|..-| +..+..-+.|+.... +.+.- +. +.+.+-...|||++++ | +++.+.+...|..
T Consensus 10 ~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~-y-----~~V~v~l~THd~g 83 (104)
T 3hxa_A 10 AEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNV-Y-----NKVHITLSTHECA 83 (104)
T ss_dssp HHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE-T-----TEEEEEECBTTTT
T ss_pred HHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEe-C-----CEEEEEEEeCCCC
Confidence 445555665653112 222344678888875 44431 22 2344555678999986 4 4455555554443
No 44
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=20.40 E-value=97 Score=23.10 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=29.9
Q ss_pred CeeEECcE--EEecCCCh--hHHHHHHHHHHHHHHhCCCcCCCceEEEEEEecCCch
Q 033395 20 PLIKCQNV--IILTATNV--TELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL 72 (120)
Q Consensus 20 PGf~i~NV--~VmAGvpv--P~i~aMl~~l~p~L~~G~L~~G~p~~S~tv~~~~~Eg 72 (120)
-||+|+|| -|.+=-|. |.+.+|-++|...| |.+.-..+|.++..|+
T Consensus 88 ~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L-------~~~~~~V~vKAtT~E~ 137 (160)
T 1gx1_A 88 KGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL-------GCHMDDVNVKATTTEK 137 (160)
T ss_dssp TTCEEEEEEEEEECSSSCCGGGHHHHHHHHHHHT-------TCCGGGEEEEEECCTT
T ss_pred cCCEEEEEEEEEEcCCCcchHHHHHHHHHHHHHh-------CCCCceEEEEEccCCC
Confidence 48999997 45666443 55688999999886 3544344555554444
No 45
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=20.07 E-value=72 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=17.6
Q ss_pred EEEecCCChhHHHHHHH-HHHHHHHh
Q 033395 27 VIILTATNVTELDKEWN-CLIELLRS 51 (120)
Q Consensus 27 V~VmAGvpvP~i~aMl~-~l~p~L~~ 51 (120)
||-|||-|+ ....+++ -+.|.|+.
T Consensus 304 v~~LPG~P~-sa~~~~~~~v~P~L~~ 328 (419)
T 2fts_A 304 IFALPGNPV-SAVVTCNLFVVPALRK 328 (419)
T ss_dssp EEEECSSHH-HHHHHHHHHHHHHHHH
T ss_pred EEECCCCHH-HHHHHHHHHHHHHHHH
Confidence 899999666 4555555 68888875
Done!