Your job contains 1 sequence.
>033397
MRPPRGGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHAC
EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDGRYCCNFIFTG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033397
(120 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079349 - symbol:AT3G03920 "AT3G03920" species... 277 3.3e-24 1
TAIR|locus:2172329 - symbol:AT5G18180 "AT5G18180" species... 274 6.8e-24 1
SGD|S000001131 - symbol:GAR1 "Protein component of the H/... 227 6.5e-19 1
CGD|CAL0002072 - symbol:GAR1 species:5476 "Candida albica... 222 2.2e-18 1
UNIPROTKB|Q59TT0 - symbol:GAR1 "Putative uncharacterized ... 222 2.2e-18 1
POMBASE|SPBC20F10.01 - symbol:gar1 "snoRNP pseudouridylas... 218 5.8e-18 1
ASPGD|ASPL0000026673 - symbol:AN10712 species:162425 "Eme... 216 9.5e-18 1
UNIPROTKB|F1MRF7 - symbol:GAR1 "Uncharacterized protein" ... 192 3.3e-15 1
UNIPROTKB|I3LVQ6 - symbol:LOC100516629 "Uncharacterized p... 192 3.3e-15 1
RGD|1563995 - symbol:Gar1 "GAR1 ribonucleoprotein homolog... 191 4.2e-15 1
UNIPROTKB|Q6AYA1 - symbol:Gar1 "H/ACA ribonucleoprotein c... 191 4.2e-15 1
UNIPROTKB|E2R6F2 - symbol:GAR1 "Uncharacterized protein" ... 190 5.4e-15 1
UNIPROTKB|F6XGZ6 - symbol:GAR1 "Uncharacterized protein" ... 190 5.4e-15 1
UNIPROTKB|Q9NY12 - symbol:GAR1 "H/ACA ribonucleoprotein c... 190 5.4e-15 1
MGI|MGI:1930948 - symbol:Gar1 "GAR1 ribonucleoprotein hom... 190 5.4e-15 1
UNIPROTKB|E1C818 - symbol:GAR1 "Uncharacterized protein" ... 183 3.0e-14 1
UNIPROTKB|F1S134 - symbol:F1S134 "Uncharacterized protein... 182 3.8e-14 1
WB|WBGene00022046 - symbol:Y66H1A.4 species:6239 "Caenorh... 182 3.8e-14 1
FB|FBgn0011824 - symbol:CG4038 species:7227 "Drosophila m... 180 6.2e-14 1
ZFIN|ZDB-GENE-040426-893 - symbol:gar1 "GAR1 ribonucleopr... 180 6.2e-14 1
DICTYBASE|DDB_G0279013 - symbol:nola1 "Gar1 family protei... 135 5.1e-09 1
GENEDB_PFALCIPARUM|PF13_0051 - symbol:PF13_0051 "snornp p... 130 1.2e-08 1
UNIPROTKB|Q8I700 - symbol:PF13_0051 "Snornp protein gar1 ... 130 1.2e-08 1
>TAIR|locus:2079349 [details] [associations]
symbol:AT3G03920 "AT3G03920" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0030515 GO:GO:0009535
EMBL:AC009540 GO:GO:0006364 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AC011698
UniGene:At.27423 eggNOG:COG3277 KO:K11128 OMA:NVKIPYF
PANTHER:PTHR23237 EMBL:AY063874 EMBL:AY091234 EMBL:AY084502
IPI:IPI00548450 RefSeq:NP_566217.1 ProteinModelPortal:Q8VZT0
SMR:Q8VZT0 STRING:Q8VZT0 PaxDb:Q8VZT0 PRIDE:Q8VZT0
EnsemblPlants:AT3G03920.1 GeneID:821062 KEGG:ath:AT3G03920
TAIR:At3g03920 HOGENOM:HOG000113795 InParanoid:Q8VZT0
PhylomeDB:Q8VZT0 ProtClustDB:CLSN2686541 Genevestigator:Q8VZT0
GermOnline:AT3G03920 Uniprot:Q8VZT0
Length = 202
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 51/67 (76%), Positives = 60/67 (89%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
EGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES+
Sbjct: 52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLF 111
Query: 104 FFGQNDG 110
+G
Sbjct: 112 SIKMMEG 118
>TAIR|locus:2172329 [details] [associations]
symbol:AT5G18180 "AT5G18180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410
ProDom:PD020235 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0030515 EMBL:AB012246 GO:GO:0009535 GO:GO:0006364
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG3277 KO:K11128 PANTHER:PTHR23237
ProtClustDB:CLSN2686541 IPI:IPI00527150 RefSeq:NP_197319.1
UniGene:At.54895 ProteinModelPortal:Q9FK53 SMR:Q9FK53 STRING:Q9FK53
EnsemblPlants:AT5G18180.1 GeneID:831936 KEGG:ath:AT5G18180
TAIR:At5g18180 InParanoid:Q9FK53 OMA:GRVDEIF PhylomeDB:Q9FK53
Genevestigator:Q9FK53 GermOnline:AT5G18180 Uniprot:Q9FK53
Length = 189
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 51/67 (76%), Positives = 59/67 (88%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
EGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES+
Sbjct: 39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLF 98
Query: 104 FFGQNDG 110
+G
Sbjct: 99 SIKMREG 105
>SGD|S000001131 [details] [associations]
symbol:GAR1 "Protein component of the H/ACA snoRNP
pseudouridylase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0034513 "box
H/ACA snoRNA binding" evidence=IPI] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0031429 "box H/ACA snoRNP
complex" evidence=IEA;IPI] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR007504
InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235 SGD:S000001131
EMBL:BK006934 GO:GO:0006364 GeneTree:ENSGT00530000063105
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 GO:GO:0034513 PDB:3U28
PDB:3UAI PDBsum:3U28 PDBsum:3UAI InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG3277 KO:K11128 OMA:NVKIPYF PANTHER:PTHR23237
OrthoDB:EOG4QRMDS EMBL:X63617 EMBL:U00060 EMBL:AY558284 PIR:S19634
RefSeq:NP_011957.1 ProteinModelPortal:P28007 SMR:P28007
DIP:DIP-4484N IntAct:P28007 MINT:MINT-551032 STRING:P28007
PaxDb:P28007 PeptideAtlas:P28007 PRIDE:P28007 EnsemblFungi:YHR089C
GeneID:856489 KEGG:sce:YHR089C CYGD:YHR089c NextBio:982191
Genevestigator:P28007 GermOnline:YHR089C Uniprot:P28007
Length = 205
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
+GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +
Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNE--V 88
Query: 104 FF 105
FF
Sbjct: 89 FF 90
>CGD|CAL0002072 [details] [associations]
symbol:GAR1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0031429 "box H/ACA
snoRNP complex" evidence=IEA] [GO:0031120 "snRNA pseudouridine
synthesis" evidence=IEA] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=IEA] [GO:0034513 "box H/ACA snoRNA binding" evidence=IEA]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
CGD:CAL0002072 GO:GO:0030515 GO:GO:0042254 GO:GO:0035690
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG3277 KO:K11128 PANTHER:PTHR23237
EMBL:AACQ01000137 RefSeq:XP_713031.1 ProteinModelPortal:Q59TT0
STRING:Q59TT0 GeneID:3645332 KEGG:cal:CaO19.1164 Uniprot:Q59TT0
Length = 186
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPP V+E+ SF+ ACEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 22 GPPDTVLEMGSFMQACEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPLNE--VF 79
Query: 105 F 105
F
Sbjct: 80 F 80
>UNIPROTKB|Q59TT0 [details] [associations]
symbol:GAR1 "Putative uncharacterized protein GAR1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR007504
InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235 CGD:CAL0002072
GO:GO:0030515 GO:GO:0042254 GO:GO:0035690 GO:GO:0009982
GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG3277 KO:K11128 PANTHER:PTHR23237 EMBL:AACQ01000137
RefSeq:XP_713031.1 ProteinModelPortal:Q59TT0 STRING:Q59TT0
GeneID:3645332 KEGG:cal:CaO19.1164 Uniprot:Q59TT0
Length = 186
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPP V+E+ SF+ ACEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 22 GPPDTVLEMGSFMQACEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPLNE--VF 79
Query: 105 F 105
F
Sbjct: 80 F 80
>POMBASE|SPBC20F10.01 [details] [associations]
symbol:gar1 "snoRNP pseudouridylase box H/ACA snoRNP
complex protein Gar1" species:4896 "Schizosaccharomyces pombe"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IGI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IC] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IGI] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IGI] [GO:0031429 "box H/ACA
snoRNP complex" evidence=IGI] [GO:0034513 "box H/ACA snoRNA
binding" evidence=ISO] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 PomBase:SPBC20F10.01 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0019843 GO:GO:0009982 GO:GO:0031429
GO:GO:0031118 GO:GO:0031120 GO:GO:0034513 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG3277 KO:K11128 OMA:NVKIPYF
PANTHER:PTHR23237 EMBL:Z19576 EMBL:AB000537 PIR:S33691
RefSeq:NP_596365.1 STRING:Q06975 PRIDE:Q06975
EnsemblFungi:SPBC20F10.01.1 GeneID:2540705 KEGG:spo:SPBC20F10.01
OrthoDB:EOG4QRMDS NextBio:20801827 Uniprot:Q06975
Length = 194
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 37/61 (60%), Positives = 51/61 (83%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPP +V+E+ F+H CEG+ V + TN KIPYFNAPIYL+NK+QIGK+DE+FGP+N+ ++
Sbjct: 25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQ--VY 82
Query: 105 F 105
F
Sbjct: 83 F 83
>ASPGD|ASPL0000026673 [details] [associations]
symbol:AN10712 species:162425 "Emericella nidulans"
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0031429 "box
H/ACA snoRNP complex" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0031120 "snRNA pseudouridine
synthesis" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
GO:GO:0042254 EMBL:BN001305 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 GO:GO:0034513 InterPro:IPR009000 SUPFAM:SSF50447
OMA:NVKIPYF PANTHER:PTHR23237 EnsemblFungi:CADANIAT00003405
Uniprot:C8VFT3
Length = 197
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPP +V+E+ +F+HACEG+ V + N KIPYFNAPIYL+NKT IGK+DE+ GPIN+
Sbjct: 33 GPPDQVLEMGTFMHACEGEMVCESINPKIPYFNAPIYLENKTPIGKIDEVLGPINQVYFT 92
Query: 105 FGQNDGRYCCNF 116
+G +F
Sbjct: 93 IKPQEGIVATSF 104
>UNIPROTKB|F1MRF7 [details] [associations]
symbol:GAR1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0031429
"box H/ACA snoRNP complex" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410
ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 PANTHER:PTHR23237
OMA:ELYIDPG EMBL:DAAA02016540 IPI:IPI00707579
Ensembl:ENSBTAT00000000992 Uniprot:F1MRF7
Length = 210
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP +VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 59 QGPPEQVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 117
>UNIPROTKB|I3LVQ6 [details] [associations]
symbol:LOC100516629 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 KO:K11128
PANTHER:PTHR23237 OMA:ELYIDPG EMBL:CU463265 RefSeq:XP_003129300.1
RefSeq:XP_003129301.1 UniGene:Ssc.24904 Ensembl:ENSSSCT00000022770
GeneID:100516629 KEGG:ssc:100516629 Uniprot:I3LVQ6
Length = 210
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP +VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 59 QGPPEQVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 117
>RGD|1563995 [details] [associations]
symbol:Gar1 "GAR1 ribonucleoprotein homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine
synthesis" evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
RGD:1563995 GO:GO:0030515 GO:GO:0015030 GO:GO:0006364
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG3277
KO:K11128 PANTHER:PTHR23237 CTD:54433 OrthoDB:EOG480HZ6 OMA:ELYIDPG
EMBL:BC079131 IPI:IPI00464655 RefSeq:NP_001019477.1
UniGene:Rn.15522 ProteinModelPortal:Q6AYA1 STRING:Q6AYA1
PRIDE:Q6AYA1 Ensembl:ENSRNOT00000013149 GeneID:499709
KEGG:rno:499709 UCSC:RGD:1563995 InParanoid:Q6AYA1 NextBio:703745
ArrayExpress:Q6AYA1 Genevestigator:Q6AYA1
GermOnline:ENSRNOG00000009877 Uniprot:Q6AYA1
Length = 226
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 124
>UNIPROTKB|Q6AYA1 [details] [associations]
symbol:Gar1 "H/ACA ribonucleoprotein complex subunit 1"
species:10116 "Rattus norvegicus" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex" evidence=IEA]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
RGD:1563995 GO:GO:0030515 GO:GO:0015030 GO:GO:0006364
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG3277
KO:K11128 PANTHER:PTHR23237 CTD:54433 OrthoDB:EOG480HZ6 OMA:ELYIDPG
EMBL:BC079131 IPI:IPI00464655 RefSeq:NP_001019477.1
UniGene:Rn.15522 ProteinModelPortal:Q6AYA1 STRING:Q6AYA1
PRIDE:Q6AYA1 Ensembl:ENSRNOT00000013149 GeneID:499709
KEGG:rno:499709 UCSC:RGD:1563995 InParanoid:Q6AYA1 NextBio:703745
ArrayExpress:Q6AYA1 Genevestigator:Q6AYA1
GermOnline:ENSRNOG00000009877 Uniprot:Q6AYA1
Length = 226
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 66 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 124
>UNIPROTKB|E2R6F2 [details] [associations]
symbol:GAR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR23237 Ensembl:ENSCAFT00000018244
Uniprot:E2R6F2
Length = 207
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 58 QGPPEHVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 116
>UNIPROTKB|F6XGZ6 [details] [associations]
symbol:GAR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 PANTHER:PTHR23237
EMBL:AAEX03016821 Ensembl:ENSCAFT00000018244 Uniprot:F6XGZ6
Length = 247
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 58 QGPPEHVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 116
>UNIPROTKB|Q9NY12 [details] [associations]
symbol:GAR1 "H/ACA ribonucleoprotein complex subunit 1"
species:9606 "Homo sapiens" [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0005261 "cation channel activity" evidence=TAS]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
EMBL:AJ276003 GO:GO:0030515 GO:GO:0005261 GO:GO:0015030
GO:GO:0006364 GO:GO:0009982 GO:GO:0031429 GO:GO:0031120
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG3277 KO:K11128
PANTHER:PTHR23237 CTD:54433 OrthoDB:EOG480HZ6 EMBL:AY780787
EMBL:BC003413 IPI:IPI00302176 IPI:IPI00607820 RefSeq:NP_061856.1
RefSeq:NP_127460.1 UniGene:Hs.69851 ProteinModelPortal:Q9NY12
SMR:Q9NY12 IntAct:Q9NY12 MINT:MINT-207666 STRING:Q9NY12
PhosphoSite:Q9NY12 DMDM:51828015 PaxDb:Q9NY12 PRIDE:Q9NY12
DNASU:54433 Ensembl:ENST00000226796 Ensembl:ENST00000394631
GeneID:54433 KEGG:hsa:54433 UCSC:uc003hzt.3 UCSC:uc010imi.3
GeneCards:GC04P110736 HGNC:HGNC:14264 MIM:606468 neXtProt:NX_Q9NY12
PharmGKB:PA164720194 HOGENOM:HOG000112695 InParanoid:Q9NY12
OMA:ELYIDPG GenomeRNAi:54433 NextBio:56637 Bgee:Q9NY12
CleanEx:HS_GAR1 Genevestigator:Q9NY12 GermOnline:ENSG00000109534
Uniprot:Q9NY12
Length = 217
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122
>MGI|MGI:1930948 [details] [associations]
symbol:Gar1 "GAR1 ribonucleoprotein homolog (yeast)"
species:10090 "Mus musculus" [GO:0001651 "dense fibrillar
component" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0031429 "box
H/ACA snoRNP complex" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 MGI:MGI:1930948 GO:GO:0030515
GO:GO:0015030 GO:GO:0006364 GeneTree:ENSGT00530000063105
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0001651 eggNOG:COG3277 KO:K11128
PANTHER:PTHR23237 CTD:54433 OrthoDB:EOG480HZ6 OMA:ELYIDPG
EMBL:AK021256 EMBL:AK075923 EMBL:BC021873 EMBL:BC048685
IPI:IPI00110931 IPI:IPI00461325 IPI:IPI00461326 RefSeq:NP_080854.1
UniGene:Mm.24873 ProteinModelPortal:Q9CY66 SMR:Q9CY66 IntAct:Q9CY66
STRING:Q9CY66 PhosphoSite:Q9CY66 PaxDb:Q9CY66 PRIDE:Q9CY66
Ensembl:ENSMUST00000029643 GeneID:68147 KEGG:mmu:68147
UCSC:uc008rim.2 InParanoid:Q9CY66 ChiTaRS:GAR1 NextBio:326530
Bgee:Q9CY66 Genevestigator:Q9CY66 GermOnline:ENSMUSG00000028010
Uniprot:Q9CY66
Length = 231
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK Q+GKVDEIFG + +
Sbjct: 75 QGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRD 133
>UNIPROTKB|E1C818 [details] [associations]
symbol:GAR1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030515 "snoRNA binding" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0031429 "box H/ACA
snoRNP complex" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410
ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 PANTHER:PTHR23237
OMA:ELYIDPG EMBL:AADN02009351 IPI:IPI00586004
Ensembl:ENSGALT00000032134 Uniprot:E1C818
Length = 212
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 34/59 (57%), Positives = 41/59 (69%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP VV + F+H CE D V K E K+PYFNAP+YL NK QIGKVDEIFG + +
Sbjct: 59 QGPPERVVLLGEFMHPCEDDLVCKCKTEENKVPYFNAPVYLDNKEQIGKVDEIFGQLRD 117
>UNIPROTKB|F1S134 [details] [associations]
symbol:F1S134 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0031429
"box H/ACA snoRNP complex" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410
ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 OMA:NVKIPYF
PANTHER:PTHR23237 Ensembl:ENSSSCT00000010005 Uniprot:F1S134
Length = 167
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 44 EGPPA-EVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP E++ + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 15 QGPPEREILILGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 74
>WB|WBGene00022046 [details] [associations]
symbol:Y66H1A.4 species:6239 "Caenorhabditis elegans"
[GO:0030515 "snoRNA binding" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
GO:GO:0006898 GO:GO:0040010 GO:GO:0030515 GO:GO:0000003
GO:GO:0040002 GO:GO:0006364 GeneTree:ENSGT00530000063105
GO:GO:0009982 GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000
SUPFAM:SSF50447 EMBL:FO081659 PIR:T33925 RefSeq:NP_499927.2
ProteinModelPortal:Q9TYK1 SMR:Q9TYK1 STRING:Q9TYK1 PaxDb:Q9TYK1
EnsemblMetazoa:Y66H1A.4.1 EnsemblMetazoa:Y66H1A.4.2 GeneID:176870
KEGG:cel:CELE_Y66H1A.4 UCSC:Y66H1A.4.1 CTD:176870 WormBase:Y66H1A.4
eggNOG:COG3277 InParanoid:Q9TYK1 KO:K11128 OMA:NVKIPYF
NextBio:894376 PANTHER:PTHR23237 Uniprot:Q9TYK1
Length = 244
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
+GPP EVV V F H C+ D V T+ KIPYFNAPIY +NK Q+GK+DEIFG E+
Sbjct: 54 QGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGEN 111
>FB|FBgn0011824 [details] [associations]
symbol:CG4038 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=ISS] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0030559 "rRNA pseudouridylation guide activity"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
EMBL:AE013599 GO:GO:0022008 GO:GO:0030515
GeneTree:ENSGT00530000063105 GO:GO:0009982 GO:GO:0031429
GO:GO:0031118 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
GO:GO:0005732 eggNOG:COG3277 KO:K11128 PANTHER:PTHR23237
EMBL:X71975 EMBL:AY075501 PIR:S49193 RefSeq:NP_477043.1
UniGene:Dm.22864 ProteinModelPortal:Q7KVQ0 SMR:Q7KVQ0 IntAct:Q7KVQ0
MINT:MINT-931791 STRING:Q7KVQ0 PaxDb:Q7KVQ0 PRIDE:Q7KVQ0
EnsemblMetazoa:FBtr0071639 GeneID:37397 KEGG:dme:Dmel_CG4038
FlyBase:FBgn0011824 InParanoid:Q7KVQ0 OMA:YANSFKP OrthoDB:EOG4K98VR
PhylomeDB:Q7KVQ0 GenomeRNAi:37397 NextBio:803432 Bgee:Q7KVQ0
GermOnline:CG4038 Uniprot:Q7KVQ0
Length = 237
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPP V+ + +++++C+ D V K+ + +PYFNAPI+L+NK Q+GK+DEIFG + + +
Sbjct: 64 GPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYSVS 123
Query: 105 FGQNDGRYCCNF 116
+D Y +F
Sbjct: 124 IKLSDNVYANSF 135
>ZFIN|ZDB-GENE-040426-893 [details] [associations]
symbol:gar1 "GAR1 ribonucleoprotein homolog
(yeast)" species:7955 "Danio rerio" [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0060216 "definitive hemopoiesis" evidence=IGI;IMP] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR007504
InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
ZFIN:ZDB-GENE-040426-893 GO:GO:0030515 GO:GO:0006364 GO:GO:0009982
GO:GO:0031429 GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447
GO:GO:0060216 eggNOG:COG3277 KO:K11128 PANTHER:PTHR23237
EMBL:BC045900 IPI:IPI00489786 RefSeq:NP_957269.1 UniGene:Dr.84813
ProteinModelPortal:Q7ZVE0 STRING:Q7ZVE0 PRIDE:Q7ZVE0 GeneID:393950
KEGG:dre:393950 CTD:54433 InParanoid:Q7ZVE0 OrthoDB:EOG480HZ6
NextBio:20814922 ArrayExpress:Q7ZVE0 Bgee:Q7ZVE0 Uniprot:Q7ZVE0
Length = 226
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
GPP VV + F+H CE + V K E K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 59 GPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 116
>DICTYBASE|DDB_G0279013 [details] [associations]
symbol:nola1 "Gar1 family protein" species:44689
"Dictyostelium discoideum" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex" evidence=IEA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA]
[GO:0030515 "snoRNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR007504 InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235
dictyBase:DDB_G0279013 GenomeReviews:CM000152_GR EMBL:AAFI02000026
GO:GO:0030515 GO:GO:0006364 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG3277
KO:K11128 PANTHER:PTHR23237 RefSeq:XP_641906.1
ProteinModelPortal:Q54XE6 STRING:Q54XE6 PRIDE:Q54XE6
EnsemblProtists:DDB0235390 GeneID:8621829 KEGG:ddi:DDB_G0279013
OMA:GYASGEN ProtClustDB:CLSZ2846824 Uniprot:Q54XE6
Length = 230
Score = 135 (52.6 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 49 EVVEVSSFLHACEGDAVTKLT-NEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFF 105
E +E+ F H CE V KLT E++P FN + +K IG VDEIFGPIN+ +FF
Sbjct: 61 ENIEIGVFSHVCEEQIVCKLTATEQVPKFNCKVLSSSKNTIGSVDEIFGPINK--VFF 116
>GENEDB_PFALCIPARUM|PF13_0051 [details] [associations]
symbol:PF13_0051 "snornp protein gar1
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR007504
InterPro:IPR021154 Pfam:PF04410 ProDom:PD020235 GO:GO:0030515
GO:GO:0042254 EMBL:AL844509 GO:GO:0009982 GO:GO:0031429
GO:GO:0031120 GO:GO:0009451 InterPro:IPR009000 SUPFAM:SSF50447
KO:K11128 PANTHER:PTHR23237 RefSeq:XP_001349823.1
ProteinModelPortal:Q8I700 EnsemblProtists:PF13_0051:mRNA
GeneID:814030 KEGG:pfa:PF13_0051 EuPathDB:PlasmoDB:PF3D7_1309500
HOGENOM:HOG000280804 ProtClustDB:CLSZ2733762 Uniprot:Q8I700
Length = 209
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 55 SFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+F CE D + K E +PYFN I+L+NK +IGKVDEI GPINE
Sbjct: 30 TFYKHCENDLLLKNELENLVPYFNGRIFLENKEEIGKVDEILGPINE 76
>UNIPROTKB|Q8I700 [details] [associations]
symbol:PF13_0051 "Snornp protein gar1 homologue, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR007504 InterPro:IPR021154
Pfam:PF04410 ProDom:PD020235 GO:GO:0030515 GO:GO:0042254
EMBL:AL844509 GO:GO:0009982 GO:GO:0031429 GO:GO:0031120
GO:GO:0009451 InterPro:IPR009000 SUPFAM:SSF50447 KO:K11128
PANTHER:PTHR23237 RefSeq:XP_001349823.1 ProteinModelPortal:Q8I700
EnsemblProtists:PF13_0051:mRNA GeneID:814030 KEGG:pfa:PF13_0051
EuPathDB:PlasmoDB:PF3D7_1309500 HOGENOM:HOG000280804
ProtClustDB:CLSZ2733762 Uniprot:Q8I700
Length = 209
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 55 SFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+F CE D + K E +PYFN I+L+NK +IGKVDEI GPINE
Sbjct: 30 TFYKHCENDLLLKNELENLVPYFNGRIFLENKEEIGKVDEILGPINE 76
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.142 0.443 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 120 81 0.00091 102 3 11 22 0.43 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 496 (53 KB)
Total size of DFA: 97 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.30u 0.10s 9.40t Elapsed: 00:00:00
Total cpu time: 9.30u 0.10s 9.40t Elapsed: 00:00:00
Start: Mon May 20 22:36:27 2013 End: Mon May 20 22:36:27 2013