BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033397
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1
Length = 202
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESV 102
DEGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES+
Sbjct: 51 DEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESL 110
Query: 103 IFFGQNDGRYCCNF 116
+G ++
Sbjct: 111 FSIKMMEGIVATSY 124
>sp|Q9FK53|NLAL2_ARATH H/ACA ribonucleoprotein complex subunit 1-like protein 2
OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1
Length = 189
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESV 102
DEGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES+
Sbjct: 38 DEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESL 97
Query: 103 IFFGQNDGRYCCNF 116
+G ++
Sbjct: 98 FSIKMREGIVATSY 111
>sp|Q6CJ45|GAR1_KLULA H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=GAR1 PE=3 SV=1
Length = 219
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 35 GRGGFGFR--DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVD 92
RGGFG R +GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVD
Sbjct: 18 SRGGFGGRAAPQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVD 77
Query: 93 EIFGPINESVIFFGQNDG 110
EI GP+NE +DG
Sbjct: 78 EILGPLNEVFFTVKCSDG 95
>sp|Q1E6M1|GAR1_COCIM H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis
(strain RS) GN=GAR1 PE=3 SV=1
Length = 203
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 28 GGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQ 87
GG GGRGG + GPP V+E+ SF+HACEG+ V + N KIPYFNAPIYL+NKT
Sbjct: 19 GGFSARGGRGGMQ-QSFGPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTP 77
Query: 88 IGKVDEIFGPINESVIFFGQNDGRYCCNF 116
+GKVDE+ GPIN+ +G +F
Sbjct: 78 VGKVDEVLGPINQVYFTIKPQEGIVATSF 106
>sp|P28007|GAR1_YEAST H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GAR1 PE=1
SV=1
Length = 205
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
+GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE
Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90
Query: 104 FFGQNDGRYCCNF 116
DG +F
Sbjct: 91 TIKCGDGVQATSF 103
>sp|Q2HH48|GAR1_CHAGB H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=GAR1 PE=3 SV=1
Length = 210
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESV 102
D GPPA V+E+ F+HACEG+ V + TN K+P+FNAPIYL+NKT +GKVDE+ GPIN+
Sbjct: 30 DMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVY 89
Query: 103 IFFGQNDGRYCCNFIF 118
++G +F +
Sbjct: 90 FTIKPSEGIQATSFKY 105
>sp|A1CVY3|GAR1_NEOFI H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=gar1 PE=3 SV=1
Length = 209
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 52/72 (72%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIF 104
GPPA+V+E+ +F+HACEG+ V + N KIPYFNAPIYL+NKT IGKVDE+ GPIN+
Sbjct: 35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFT 94
Query: 105 FGQNDGRYCCNF 116
+G +F
Sbjct: 95 IKPQEGIVATSF 106
>sp|A6SDR8|GAR1_BOTFB H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana
(strain B05.10) GN=GAR1 PE=3 SV=1
Length = 221
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 51/75 (68%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
RD GPPA+V + SFLHA EG+ V + N KIPYFNAPIYL+NKT IGKVDEI GPIN+
Sbjct: 39 RDNGPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQV 98
Query: 102 VIFFGQNDGRYCCNF 116
+G +F
Sbjct: 99 YFTIKPTEGIQATSF 113
>sp|A3GHP2|GAR1_PICST H/ACA ribonucleoprotein complex subunit 1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=GAR1 PE=3 SV=1
Length = 202
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
+GPP V+E+ +F+ ACEGD V + N KIPYFNAPIYL+NKTQIGKVDEI GP+NE +
Sbjct: 23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNE--V 80
Query: 104 FF 105
FF
Sbjct: 81 FF 82
>sp|Q6FSB0|GAR1_CANGA H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=GAR1 PE=3 SV=1
Length = 222
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 46/57 (80%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
+GPP V+E+ F+H CEGD V + N K+PYFNAPIYL+NKTQ+GKVDEI GP+NE
Sbjct: 32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNE 88
>sp|Q6BVF9|GAR1_DEBHA H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=GAR1 PE=3 SV=1
Length = 215
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVI 103
+GPP V+E+ +F+ +CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +
Sbjct: 23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNE--V 80
Query: 104 FF 105
FF
Sbjct: 81 FF 82
>sp|P0CN78|GAR1_CRYNJ H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=GAR1 PE=3 SV=1
Length = 203
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
RD GPP V+E+ SF H E + + LT KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32 RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91
Query: 101 SVIFFGQNDGRYCCNF 116
G +F
Sbjct: 92 VYFTVKMEQGMLASSF 107
>sp|P0CN79|GAR1_CRYNB H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=GAR1 PE=3 SV=1
Length = 203
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
RD GPP V+E+ SF H E + + LT KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32 RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91
Query: 101 SVIFFGQNDGRYCCNF 116
G +F
Sbjct: 92 VYFTVKMEQGMLASSF 107
>sp|Q6AYA1|GAR1_RAT H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus
GN=Gar1 PE=2 SV=1
Length = 226
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFG 96
F+D+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK QIGKVDEIFG
Sbjct: 63 FQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFG 120
>sp|Q4P5P0|GAR1_USTMA H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=GAR1 PE=3 SV=1
Length = 227
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPIN 99
+ + GPP V + SF+HA EG+ + + T+ K +PYFNAPIYL+NK+QIGKVDEI GPIN
Sbjct: 36 YANAGPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPIN 95
Query: 100 ESVIFFGQNDGRYCCNF 116
E + G +F
Sbjct: 96 EVFFTVKMDPGMVATSF 112
>sp|Q5RJV1|GAR1_XENTR H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis
GN=gar1 PE=2 SV=1
Length = 218
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTK-LTNE-KIPYFNAPIYLQNKTQIGKVDEIFG 96
D+GPP VVEV F+H CE D V K +T E ++PYFNAPIYL+NK QIGKVDEIFG
Sbjct: 56 DQGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFG 111
>sp|Q61B10|GAR1_CAEBR Probable H/ACA ribonucleoprotein complex subunit 1-like protein
OS=Caenorhabditis briggsae GN=CBG13541 PE=3 SV=1
Length = 246
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFG 96
D+GPP EVV V F H C+ D V T+ KIPYFNAPIY +NK Q+GK+DEIFG
Sbjct: 61 DQGPPEEVVLVGVFSHKCQDDIVCNNTSGKIPYFNAPIYFENKEQVGKIDEIFG 114
>sp|Q06975|GAR1_SCHPO H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=gar1 PE=2 SV=1
Length = 194
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 13/106 (12%)
Query: 11 RGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTN 70
RGG GGG GG G F GPP +V+E+ F+H CEG+ V + TN
Sbjct: 4 RGG-------------RGGGFRGGRGGSRPFTPSGPPDQVIELGLFMHDCEGEMVCQSTN 50
Query: 71 EKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDGRYCCNF 116
KIPYFNAPIYL+NK+QIGK+DE+FGP+N+ ++G +F
Sbjct: 51 VKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSF 96
>sp|Q9TYK1|GAR1_CAEEL Probable H/ACA ribonucleoprotein complex subunit 1-like protein
OS=Caenorhabditis elegans GN=Y66H1A.4 PE=3 SV=2
Length = 244
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFG 96
D+GPP EVV V F H C+ D V T+ KIPYFNAPIY +NK Q+GK+DEIFG
Sbjct: 53 DQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFG 106
>sp|Q7KVQ0|GAR1_DROME Probable H/ACA ribonucleoprotein complex subunit 1 OS=Drosophila
melanogaster GN=CG4038 PE=1 SV=1
Length = 237
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESV 102
D GPP V+ + +++++C+ D V K+ + +PYFNAPI+L+NK Q+GK+DEIFG + +
Sbjct: 62 DTGPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYS 121
Query: 103 IFFGQNDGRYCCNF 116
+ +D Y +F
Sbjct: 122 VSIKLSDNVYANSF 135
>sp|Q7ZVE0|GAR1_DANRE H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1
PE=2 SV=1
Length = 226
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFG 96
+D GPP VV + F+H CE + V K E K+PYFNAP+YL+NK QIGKVDEIFG
Sbjct: 56 QDYGPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFG 112
>sp|Q9CY66|GAR1_MOUSE H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1
PE=2 SV=1
Length = 231
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 12/69 (17%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPI 98
F+D+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK Q+ G +
Sbjct: 72 FQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQV-------GKV 124
Query: 99 NESVIFFGQ 107
+E FGQ
Sbjct: 125 DE---IFGQ 130
>sp|Q757V8|GAR1_ASHGO H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=GAR1 PE=3 SV=1
Length = 212
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 12/65 (18%)
Query: 46 PPAEVVEVSSFLHACEGDAV-----TKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
PP VVE+ +F+H CEGD V TK+ NA IYL+NKT++GKVDEI GP+NE
Sbjct: 34 PPDSVVEMGAFMHDCEGDIVCRSINTKIPYF-----NAMIYLENKTEVGKVDEILGPLNE 88
Query: 101 SVIFF 105
+FF
Sbjct: 89 --VFF 91
>sp|Q9NY12|GAR1_HUMAN H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1
PE=1 SV=1
Length = 217
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 6 GGGGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGF------------RDEGPPAEVVEV 53
GGGG R G GG GGGG G G GF +D+GPP VV +
Sbjct: 14 GGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERVVLL 73
Query: 54 SSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG + +
Sbjct: 74 GEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRD 122
>sp|O96722|GAR1_ENCCU H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=GAR1 PE=3 SV=1
Length = 195
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 38 GFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGP 97
F R E E+ L+ C+G V KL + IPY N+P+ + IGKVDEI G
Sbjct: 17 NFNNRKRLKSTETAELGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGR 76
Query: 98 INESVIFFGQND 109
I++ + +D
Sbjct: 77 IDDVHVTIKPDD 88
>sp|Q54XE6|GAR1_DICDI Probable H/ACA ribonucleoprotein complex subunit 1 OS=Dictyostelium
discoideum GN=gar1 PE=3 SV=1
Length = 230
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 8 GGFRGGRDGGRGGRGGGRFGGGGRGGGGRGGFGFRDEGPPA--------EVVEVSSFLHA 59
GG RGGR GGRGG GGG GG G GGGRGG G E +E+ F H
Sbjct: 12 GGDRGGRGGGRGGFGGGDRGGRGGFGGGRGGGRGGFGGDRGDRGGYASGENIEIGVFSHV 71
Query: 60 CEGDAVTKLT-NEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFG 106
CE V KLT E++P FN + +K IG VDEIFGPIN+ +FF
Sbjct: 72 CEEQIVCKLTATEQVPKFNCKVLSSSKNTIGSVDEIFGPINK--VFFS 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.151 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,650,967
Number of Sequences: 539616
Number of extensions: 3326234
Number of successful extensions: 88485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 510
Number of HSP's that attempted gapping in prelim test: 24774
Number of HSP's gapped (non-prelim): 29896
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)