Query 033397
Match_columns 120
No_of_seqs 116 out of 194
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_C H/ACA ribonucleoprotein 100.0 3.6E-41 1.2E-45 245.8 8.7 76 41-116 18-93 (114)
2 2ey4_C Small nucleolar RNP sim 100.0 4.3E-30 1.5E-34 177.2 6.2 66 48-116 6-72 (82)
3 2hvy_B GAR1, small nucleolar R 99.9 5.3E-28 1.8E-32 173.5 8.3 61 48-110 6-67 (104)
4 2eqn_A Hypothetical protein LO 99.9 8.1E-26 2.8E-30 160.9 7.0 71 46-116 20-94 (103)
5 2v3m_A NAF1; ribosomal protein 99.9 3.6E-24 1.2E-28 158.2 6.0 71 46-116 26-103 (131)
6 2f1l_A 16S rRNA processing pro 71.5 6.6 0.00023 29.4 5.1 35 76-110 119-153 (187)
7 3htr_A Uncharacterized PRC-bar 65.1 4.5 0.00015 28.1 2.7 32 76-107 21-55 (120)
8 1pm3_A MTH1895; unknown functi 64.2 4.7 0.00016 27.1 2.7 22 75-96 27-48 (97)
9 3h9n_A Ribosome maturation fac 61.7 13 0.00045 27.3 5.0 33 76-108 101-133 (177)
10 1eys_H Photosynthetic reaction 57.4 6.5 0.00022 31.5 2.8 33 76-108 152-187 (259)
11 2dyi_A Probable 16S rRNA-proce 56.6 15 0.0005 26.7 4.4 34 76-110 95-128 (162)
12 2qgg_A 16S rRNA-processing pro 51.8 21 0.00071 26.3 4.6 32 76-107 110-145 (182)
13 1rzh_H Reaction center protein 40.6 17 0.00056 29.4 2.7 29 77-107 150-183 (260)
14 2dgy_A MGC11102 protein; EIF-1 40.6 26 0.0009 24.5 3.4 32 78-112 8-39 (111)
15 2wjn_H Reaction center protein 38.1 18 0.00061 29.1 2.5 29 77-107 154-187 (258)
16 2pi2_E Replication protein A 1 37.7 88 0.003 22.5 6.0 49 48-100 44-96 (142)
17 3l48_A Outer membrane usher pr 36.6 34 0.0012 22.8 3.4 48 63-110 9-63 (94)
18 4ft4_B DNA (cytosine-5)-methyl 32.7 41 0.0014 29.1 4.1 33 76-108 60-97 (784)
19 2vgp_C Inner centromere protei 32.7 5 0.00017 24.2 -1.2 12 90-101 23-34 (43)
20 2v2f_A Penicillin binding prot 32.5 29 0.001 17.7 2.0 18 74-91 3-20 (26)
21 2xet_A CAF1A usher, F1 capsule 30.4 37 0.0013 21.8 2.7 23 70-92 12-35 (89)
22 1v8h_A Sulfur oxidation protei 27.6 1E+02 0.0035 20.9 4.7 60 47-110 18-81 (107)
23 2oxg_Z SOXZ protein; immunoglo 20.6 1.3E+02 0.0045 20.4 4.1 52 56-109 26-81 (108)
No 1
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=100.00 E-value=3.6e-41 Score=245.84 Aligned_cols=76 Identities=55% Similarity=0.943 Sum_probs=70.1
Q ss_pred CCCCCCCcceEEeeeEEeeeCCcEEEeecCCCCCccCCeeEecCcceeeeeeEeeccCCcceEEEeeCCCcceeee
Q 033397 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDGRYCCNF 116 (120)
Q Consensus 41 ~~~~gPP~~v~elG~f~H~ce~~lV~k~t~~~VPyfNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~gv~AsSf 116 (120)
++|+|||++|++||+|+|+||++||||+++++|||||||||+|||++||||||||||||++||||||+++++|+||
T Consensus 18 ~~~~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sf 93 (114)
T 3u28_C 18 GSHMGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSF 93 (114)
T ss_dssp -----CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGC
T ss_pred CCCCCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCccccc
Confidence 5699999999999999999999999999988999999999999999999999999999999999999999999997
No 2
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.96 E-value=4.3e-30 Score=177.23 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=60.7
Q ss_pred cceEEeeeEEeee-CCcEEEeecCCCCCccCCeeEecCcceeeeeeEeeccCCcceEEEeeCCCcceeee
Q 033397 48 AEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDGRYCCNF 116 (120)
Q Consensus 48 ~~v~elG~f~H~c-e~~lV~k~t~~~VPyfNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~gv~AsSf 116 (120)
++|++||+|+|+| +++||||++ ++|||||+|||+|+++||||||||||+|+|||||||++ ..|+||
T Consensus 6 ~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~ 72 (82)
T 2ey4_C 6 EKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY 72 (82)
T ss_dssp --CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT
T ss_pred ceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc
Confidence 7899999999999 999999984 89999999999999999999999999999999999998 567776
No 3
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.95 E-value=5.3e-28 Score=173.54 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=57.0
Q ss_pred cceEEeeeEEeee-CCcEEEeecCCCCCccCCeeEecCcceeeeeeEeeccCCcceEEEeeCCC
Q 033397 48 AEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDG 110 (120)
Q Consensus 48 ~~v~elG~f~H~c-e~~lV~k~t~~~VPyfNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~g 110 (120)
++|++||+|+|+| +++|||+++ ++|||||+|||+|+++||||||||||+|+|||||||++.
T Consensus 6 ~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~~ 67 (104)
T 2hvy_B 6 EKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS 67 (104)
T ss_dssp --CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS
T ss_pred ceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecCC
Confidence 7899999999999 999999984 899999999999999999999999999999999999983
No 4
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=8.1e-26 Score=160.87 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCc-ceEEeeeEEeeeCCcEEEeecCC-CCCccCCeeEecCcceeeeeeEeeccCCcceEEEeeCC--Ccceeee
Q 033397 46 PPA-EVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQND--GRYCCNF 116 (120)
Q Consensus 46 PP~-~v~elG~f~H~ce~~lV~k~t~~-~VPyfNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~--gv~AsSf 116 (120)
||+ +|++||+++|+|++++|||++.+ ++|+||++||+|||++||||+|||||++++||+||+++ +++|++|
T Consensus 20 ~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~ 94 (103)
T 2eqn_A 20 PEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGI 94 (103)
T ss_dssp CTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTC
T ss_pred CCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccc
Confidence 455 88999999999999999999754 69999999999999999999999999999999999964 7888765
No 5
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-24 Score=158.20 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCcceEEeeeEEeeeCCcEEEeecC---CCCCccCCeeEecCcceeeeeeEeeccCCcceEEEeeC----CCcceeee
Q 033397 46 PPAEVVEVSSFLHACEGDAVTKLTN---EKIPYFNAPIYLQNKTQIGKVDEIFGPINESVIFFGQN----DGRYCCNF 116 (120)
Q Consensus 46 PP~~v~elG~f~H~ce~~lV~k~t~---~~VPyfNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~----~gv~AsSf 116 (120)
|-++|++||+|+|+|++++|||++. .++|++||+||+|||++||||||||||++++|||||++ ++++|++|
T Consensus 26 ~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~ 103 (131)
T 2v3m_A 26 EKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKV 103 (131)
T ss_dssp TTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHT
T ss_pred CCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhccc
Confidence 3367999999999999999999974 36999999999999999999999999999999999998 55777654
No 6
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=71.55 E-value=6.6 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=27.2
Q ss_pred cCCeeEecCcceeeeeeEeeccCCcceEEEeeCCC
Q 033397 76 FNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDG 110 (120)
Q Consensus 76 fNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~g 110 (120)
++..|++++.+.+|+|.||+=.-.+-.+.||..++
T Consensus 119 IGl~V~~~~g~~lG~V~~v~~~ganDvlvV~~~~g 153 (187)
T 2f1l_A 119 EGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAG 153 (187)
T ss_dssp TTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTT
T ss_pred CCeEEEeCCCCEEEEEEEEccCCCcEEEEEEeCCC
Confidence 47889999999999999999655444467887654
No 7
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=65.06 E-value=4.5 Score=28.10 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=23.3
Q ss_pred cCCeeEecCcceeeeeeEeeccC---CcceEEEee
Q 033397 76 FNAPIYLQNKTQIGKVDEIFGPI---NESVIFFGQ 107 (120)
Q Consensus 76 fNapVy~enK~~IGKVdEIFGPI---n~~yfSVKl 107 (120)
.+..||+.+.++||+|+||+==. +--|+.|..
T Consensus 21 ~G~~V~~~dG~~iG~V~dv~iD~~~G~i~~~vv~~ 55 (120)
T 3htr_A 21 QGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSF 55 (120)
T ss_dssp TTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEE
T ss_pred cCCEEEcCCCCEEEEEEEEEEECCCCcEEEEEEEC
Confidence 67889999999999999987321 123566654
No 8
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=64.19 E-value=4.7 Score=27.10 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.1
Q ss_pred ccCCeeEecCcceeeeeeEeec
Q 033397 75 YFNAPIYLQNKTQIGKVDEIFG 96 (120)
Q Consensus 75 yfNapVy~enK~~IGKVdEIFG 96 (120)
..+-+||+.+.+++|+|+||.=
T Consensus 27 L~Gk~Vin~dG~~LG~V~Dv~i 48 (97)
T 1pm3_A 27 MVGKEVLDSSAKVIGKVKDVEV 48 (97)
T ss_dssp SSSCEEECTTSCEEEEEEEEEE
T ss_pred CCCCEeECCCCCEEeEEEEEEE
Confidence 4688999999999999999864
No 9
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=61.74 E-value=13 Score=27.25 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=26.2
Q ss_pred cCCeeEecCcceeeeeeEeeccCCcceEEEeeC
Q 033397 76 FNAPIYLQNKTQIGKVDEIFGPINESVIFFGQN 108 (120)
Q Consensus 76 fNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~ 108 (120)
++-.|++++.+.+|+|.||+=.-.+-.+.||..
T Consensus 101 iGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 101 IGCTVVNLEGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTCEEEETTCCEEEEEEEEEESSSCEEEEEECC
T ss_pred cCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEec
Confidence 567899999999999999997554445778864
No 10
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=57.36 E-value=6.5 Score=31.53 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=25.3
Q ss_pred cCCeeEecCcceeeeeeEeeccC---CcceEEEeeC
Q 033397 76 FNAPIYLQNKTQIGKVDEIFGPI---NESVIFFGQN 108 (120)
Q Consensus 76 fNapVy~enK~~IGKVdEIFGPI---n~~yfSVKl~ 108 (120)
....||..+.++||+|+||+==. .--|+.|..-
T Consensus 152 ~G~~Vya~DGekIG~V~Dv~vD~~sG~VrYlVVdtG 187 (259)
T 1eys_H 152 RGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVA 187 (259)
T ss_dssp TTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred cCCEEEeCCCCeeEEEEEEEEECCCCeEEEEEEEcC
Confidence 47789999999999999998322 1257777764
No 11
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=56.64 E-value=15 Score=26.71 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=26.5
Q ss_pred cCCeeEecCcceeeeeeEeeccCCcceEEEeeCCC
Q 033397 76 FNAPIYLQNKTQIGKVDEIFGPINESVIFFGQNDG 110 (120)
Q Consensus 76 fNapVy~enK~~IGKVdEIFGPIn~~yfSVKl~~g 110 (120)
.+-.|+ ++.+.+|+|.||+=.-.+-.+.||..++
T Consensus 95 iGl~V~-~~g~~lG~V~~v~~~ga~dvl~V~~~~g 128 (162)
T 2dyi_A 95 IGLPVY-VEGRQVGEVVDILDAGAQDVLIIRGVGE 128 (162)
T ss_dssp TTCEEE-ETTEEEEEEEEEEEETTEEEEEEEECCS
T ss_pred CCeEEE-ECCeEEEEEEEEccCCCceEEEEEeCCC
Confidence 578899 8899999999999655444467887665
No 12
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=51.82 E-value=21 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=25.2
Q ss_pred cCCeeEec----CcceeeeeeEeeccCCcceEEEee
Q 033397 76 FNAPIYLQ----NKTQIGKVDEIFGPINESVIFFGQ 107 (120)
Q Consensus 76 fNapVy~e----nK~~IGKVdEIFGPIn~~yfSVKl 107 (120)
++-.|+++ +.+.+|+|.||+=.-.+-.+.||.
T Consensus 110 iGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~ 145 (182)
T 2qgg_A 110 KGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRA 145 (182)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEe
Confidence 47889998 889999999999655444467886
No 13
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=40.65 E-value=17 Score=29.37 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=22.5
Q ss_pred CCeeEecCcceeeeeeEeeccCCc-----ceEEEee
Q 033397 77 NAPIYLQNKTQIGKVDEIFGPINE-----SVIFFGQ 107 (120)
Q Consensus 77 NapVy~enK~~IGKVdEIFGPIn~-----~yfSVKl 107 (120)
.-+||..|.++||+|+|++ +++ -|+.|..
T Consensus 150 G~~Vyg~DGe~iGsV~Dl~--VD~~eg~VRYLVVdt 183 (260)
T 1rzh_H 150 GLPVRGCDLEIAGKVVDIW--VDIPEQMARFLEVEL 183 (260)
T ss_dssp TCEEEETTSCEEEEEEEEE--EETTTTEEEEEEEEC
T ss_pred CCEeEcCCCCeeEEEEEEE--EECCCCEEEEEEEEe
Confidence 5689999999999999998 333 3555555
No 14
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.63 E-value=26 Score=24.48 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=23.1
Q ss_pred CeeEecCcceeeeeeEeeccCCcceEEEeeCCCcc
Q 033397 78 APIYLQNKTQIGKVDEIFGPINESVIFFGQNDGRY 112 (120)
Q Consensus 78 apVy~enK~~IGKVdEIFGPIn~~yfSVKl~~gv~ 112 (120)
..++.++.+.+|+|.+.+| +-.|.|++.++..
T Consensus 8 e~~~p~ege~~g~V~~~lg---n~~f~V~l~nG~~ 39 (111)
T 2dgy_A 8 EHIVPSNQQQIVRVLRTPG---NNLHEVETAQGQR 39 (111)
T ss_dssp SSCCCCSSCEEEEEEECCS---SSEEEEECTTSCE
T ss_pred cccCCCCCeEEEEEEEeCC---CCEEEEEeCCCCE
Confidence 3345567788888888888 3358888888754
No 15
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=38.10 E-value=18 Score=29.12 Aligned_cols=29 Identities=10% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCeeEecCcceeeeeeEeeccCCc-----ceEEEee
Q 033397 77 NAPIYLQNKTQIGKVDEIFGPINE-----SVIFFGQ 107 (120)
Q Consensus 77 NapVy~enK~~IGKVdEIFGPIn~-----~yfSVKl 107 (120)
.-+||..+.++||+|+|++ +++ -|+.|..
T Consensus 154 G~~Vyg~DGe~iGsV~Dl~--VD~~eg~VRYLVVdt 187 (258)
T 2wjn_H 154 GLPVVAADGVEAGTVTDLW--VDRSEHYFRYLELSV 187 (258)
T ss_dssp TCEEECTTSCEEEEEEEEE--EETTTTEEEEEEEEE
T ss_pred CCEeEcCCCCeeEEEEEEE--EECCCCEEEEEEEEc
Confidence 5689999999999999998 333 3565655
No 16
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=37.67 E-value=88 Score=22.53 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=31.1
Q ss_pred cceEEeeeEEee--eCCcEEEeecCC-CCC-ccCCeeEecCcceeeeeeEeeccCCc
Q 033397 48 AEVVEVSSFLHA--CEGDAVTKLTNE-KIP-YFNAPIYLQNKTQIGKVDEIFGPINE 100 (120)
Q Consensus 48 ~~v~elG~f~H~--ce~~lV~k~t~~-~VP-yfNapVy~enK~~IGKVdEIFGPIn~ 100 (120)
..|..+|++... -.+.++++++.. +|- .+|.|+ ...++++.||-|-+++
T Consensus 44 k~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL----~~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL----DEEISGIVEVVGRVTA 96 (142)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCC----SSCCCSEEEEEEEECT
T ss_pred CEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC----CccCCCEEEEEEEECC
Confidence 568899999988 455788887533 343 345543 1234678888885544
No 17
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=36.62 E-value=34 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=28.8
Q ss_pred cEEEee--cCCCCCccCCeeEecCcceeeeeeE---ee--ccCCcceEEEeeCCC
Q 033397 63 DAVTKL--TNEKIPYFNAPIYLQNKTQIGKVDE---IF--GPINESVIFFGQNDG 110 (120)
Q Consensus 63 ~lV~k~--t~~~VPyfNapVy~enK~~IGKVdE---IF--GPIn~~yfSVKl~~g 110 (120)
.+++.+ .+.+.+-|.|-|++++.+.+|-|.+ +| |--.+--++||..++
T Consensus 9 ~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~G~vyl~gl~~~g~L~V~Wg~~ 63 (94)
T 3l48_A 9 RLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVNWDGK 63 (94)
T ss_dssp CEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGGGEEEESSCCTTCEEEEECSSS
T ss_pred EEEEEEECCCCCcCCCccEEEcCCCceEEEECCCCEEEEECCCCCCEEEEEECCC
Confidence 344444 3445667899999988888887764 22 322233466666543
No 18
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=32.74 E-value=41 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=25.0
Q ss_pred cCCeeEecCc----ceeeeeeEeeccCC-cceEEEeeC
Q 033397 76 FNAPIYLQNK----TQIGKVDEIFGPIN-ESVIFFGQN 108 (120)
Q Consensus 76 fNapVy~enK----~~IGKVdEIFGPIn-~~yfSVKl~ 108 (120)
+|+.||.+.. ..||+|.|||=..+ +.||+|+..
T Consensus 60 ~~d~~~v~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 97 (784)
T 4ft4_B 60 LGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWF 97 (784)
T ss_dssp TTCEEEECCSTTSCCEEEEEEEEEEETTSCEEEEEEEE
T ss_pred CCCeEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEEe
Confidence 6888887642 35999999998764 589998754
No 19
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=32.69 E-value=5 Score=24.20 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=10.3
Q ss_pred eeeEeeccCCcc
Q 033397 90 KVDEIFGPINES 101 (120)
Q Consensus 90 KVdEIFGPIn~~ 101 (120)
.+|+|||||..+
T Consensus 23 D~d~iFG~I~pp 34 (43)
T 2vgp_C 23 DVDRMYGTIDSP 34 (43)
T ss_dssp CHHHHTTTSCCC
T ss_pred CHHHHcCCCCCc
Confidence 689999999876
No 20
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=32.51 E-value=29 Score=17.68 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.5
Q ss_pred CccCCeeEecCcceeeee
Q 033397 74 PYFNAPIYLQNKTQIGKV 91 (120)
Q Consensus 74 PyfNapVy~enK~~IGKV 91 (120)
+...+-||+.|.+.|.++
T Consensus 3 ~~~ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 3 ATTSSKIYDNKNQLIADL 20 (26)
T ss_pred CCCCCEEEeCCCCEeeec
Confidence 345688999999998876
No 21
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=30.38 E-value=37 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=16.6
Q ss_pred CCCCCccCCee-EecCcceeeeee
Q 033397 70 NEKIPYFNAPI-YLQNKTQIGKVD 92 (120)
Q Consensus 70 ~~~VPyfNapV-y~enK~~IGKVd 92 (120)
+.+.+-|.|.| ++++.+.+|-|.
T Consensus 12 dG~~lPfGa~V~~~~~g~~~giVg 35 (89)
T 2xet_A 12 DNKPVPFGSIVTIEGQSSSSGIVG 35 (89)
T ss_dssp TSCBCCTTCEEEETTCCSCCEECC
T ss_pred CCCcCCCccEEEECCCCCEEEEEc
Confidence 34444599999 988777787774
No 22
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=27.61 E-value=1e+02 Score=20.91 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=36.9
Q ss_pred CcceEEeeeEEeeeCCcEEEeecCCCCC--ccCCeeEecCcceeeeeeEeecc-C-CcceEEEeeCCC
Q 033397 47 PAEVVEVSSFLHACEGDAVTKLTNEKIP--YFNAPIYLQNKTQIGKVDEIFGP-I-NESVIFFGQNDG 110 (120)
Q Consensus 47 P~~v~elG~f~H~ce~~lV~k~t~~~VP--yfNapVy~enK~~IGKVdEIFGP-I-n~~yfSVKl~~g 110 (120)
+.+|.-| ++|+-+.=|.--.+-..|| |++......|.+.+-.++ ++| + .+|||+.++...
T Consensus 18 ~~~vk~~--I~HPmetGl~~D~~g~~iPa~~I~~v~~~~ng~~v~~~~--~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 18 EFRLQVV--AQHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEAR--PGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp EEEEEEE--ECCCCBCSCCBCTTSCBCCCBCEEEEEEEETTEEEEEEC--CCSSCCSSCEEEEEEECC
T ss_pred cEEEEEE--eECCCCccccccccCCcCchHheEEEEEEECCEEEEEEE--eCCccccCCeEEEEEecC
Confidence 3444443 7787775333222334577 678777777888877776 333 3 488888877543
No 23
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=20.59 E-value=1.3e+02 Score=20.44 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred EEeeeCCcEEEeecCCCCC--ccCCeeEecCcceeeeeeEeecc-C-CcceEEEeeCC
Q 033397 56 FLHACEGDAVTKLTNEKIP--YFNAPIYLQNKTQIGKVDEIFGP-I-NESVIFFGQND 109 (120)
Q Consensus 56 f~H~ce~~lV~k~t~~~VP--yfNapVy~enK~~IGKVdEIFGP-I-n~~yfSVKl~~ 109 (120)
++|+-+.=|.--.+-..|| |++......|.+.+-.++ ++| + .+|||+.++..
T Consensus 26 I~HPMetGl~~d~~g~~IPa~~I~~v~~~~ng~~v~~~~--~~~~iS~NP~~~F~~~~ 81 (108)
T 2oxg_Z 26 ISHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVA--IDPAVSTNPYFEFDAKV 81 (108)
T ss_dssp ECCCCBCSCCBCTTSCBCCCBCEEEEEEEETTEEEEEEE--ECTTBCSSCEEEEEEEE
T ss_pred eECCCccccccCcCCCccchHheEEEEEEECCEEEEEEE--eCCccccCCeEEEEEec
Confidence 6777665332211223477 778887777888887776 333 3 48888887654
Done!