BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033398
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41098|RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1
Length = 120
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/120 (95%), Positives = 117/120 (97%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRLTYR RHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP
Sbjct: 1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
>sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
Length = 120
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/120 (94%), Positives = 116/120 (96%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP
Sbjct: 1 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120
>sp|Q42351|RL341_ARATH 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2
SV=1
Length = 120
Score = 224 bits (572), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 110/120 (91%), Positives = 117/120 (97%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRL YR+RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120
>sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3
SV=1
Length = 119
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/119 (91%), Positives = 114/119 (95%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 119
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119
>sp|Q9LJW6|RL343_ARATH 60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2
SV=1
Length = 120
Score = 218 bits (555), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/120 (89%), Positives = 113/120 (94%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
EYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl34a PE=3 SV=1
Length = 112
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 80/108 (74%), Gaps = 2/108 (1%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
M QR+TYR R +Y T+SN+ R++KTPG + Y KK + P+C TG +QGIP LRP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLK 108
E+ +RLS N++TV RAYGG LS AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61 EF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl34b PE=1 SV=1
Length = 111
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 2/108 (1%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
M QR+TYR R +Y T+SN+ R++KTPG + Y KK + P+C TG +QGIP LRP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLK 108
E+ +RLS N++ V RAYGG LS AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61 EF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL34A PE=1 SV=1
Length = 121
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
M QR+T+R R+ Y T+SN+ +VVKTPGG L Q KK A+ PKC G +QGI LRP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ 110
+Y + +S+ +TV+RAYGG V+ERIIRAFL+EEQKIVKKV+K Q
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQ 108
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL34B PE=1 SV=1
Length = 121
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
M QR+T+R R+ Y T+SN+ +VVKTPGG L Q KK A+ PKC G +QGI LRP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ 110
+Y + +S+ +TV+RAYGG V+ERI+RAFL+EEQKIVKKV+K Q
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIEEQKIVKKVVKEQ 108
>sp|Q54LV8|RL34_DICDI 60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3
SV=1
Length = 122
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRLTYR R SY T SN ++VKTPGG+LVYQ K P+C G + GIP LRP
Sbjct: 1 MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPY 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVL 107
+YK L ++RRTV+RAYGG VR RI+RAFL+EEQK K V
Sbjct: 61 QYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVF 105
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2
Length = 130
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 79/111 (71%), Gaps = 3/111 (2%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRLT R R SY TKSN+ RVV+TPGG+LVY KK+ + PKC +++ GI RP+
Sbjct: 1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPS 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK 111
E R R+ R +TV R +GGVL +RERIIRAFL++EQK+V KVLK Q+
Sbjct: 61 E--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVV-KVLKAQQ 108
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3
Length = 139
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 79/111 (71%), Gaps = 3/111 (2%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
MVQRLT R R SY TKSN+ RVV+TPGG+LVY KK+ + PKC +++ GI RP+
Sbjct: 1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPS 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK 111
E R R+ R +TV R +GGVL +RERIIRAFL++EQK+V KVLK Q+
Sbjct: 61 E--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVV-KVLKAQQ 108
>sp|Q7ZWJ7|RL34_DANRE 60S ribosomal protein L34 OS=Danio rerio GN=rpl34 PE=3 SV=3
Length = 117
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR R SY T SN+ R+ +TPG ++VY TKK PK C + R++GI +R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V+RAYGG + VR+RI RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PQVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQTQK 115
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34 OS=Homo sapiens GN=RPL34 PE=1 SV=3
Length = 117
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR R SY T SN+ R+ +TPG ++VY TKK PK C V R++G+ +R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V+RAYGG + VR+RI RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PKVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQK 115
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=3 SV=2
Length = 117
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR R SY T SN+ R+ +TPG ++VY TKK PK C V R++G+ +R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V+RAYGG + VR+RI RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PKVL--MRLSKTQKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQK 115
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 OS=Ictalurus punctatus GN=rpl34 PE=3 SV=3
Length = 117
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR SY T SN+ R+ +TPG ++VY TKK PK C + R++GI +R
Sbjct: 1 MVQRLTYRRTVSYNTTSNKTRLSRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V+RAYGG + VR+RI RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PQVL--MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQK 115
>sp|P0DJ23|RL34_TETTS 60S ribosomal protein L34 OS=Tetrahymena thermophila (strain SB210)
GN=RPL34 PE=1 SV=1
Length = 123
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 4/107 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRI--QGIPHLR 58
M QR+TYR R SY T+SN+ R VKTPGG+LV Q KK + KC G + GI +R
Sbjct: 1 MAQRITYRRRCSYNTRSNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKK 105
PAEY + ++R+ +TV+R YGG L VR RIIRAFL EE KIVK+
Sbjct: 61 PAEY--ATIARSAKTVSRVYGGELCHTCVRSRIIRAFLTEEVKIVKR 105
>sp|Q29223|RL34_PIG 60S ribosomal protein L34 OS=Sus scrofa GN=RPL34 PE=3 SV=2
Length = 117
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR R SY T SN+ R+ +TPG ++VY TKK PK C V R++G+ +R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V VR+R RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PKVL--MRLSKTKKHVQPGLWWFHVAKCVRDRXKRAFLIEEQKIVVKVLKAQAQSQK 115
>sp|P11250|RL34_RAT 60S ribosomal protein L34 OS=Rattus norvegicus GN=Rpl34 PE=1 SV=3
Length = 117
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPK--CPVTGKRIQGIPHLR 58
MVQRLTYR R SY T SN+ R+ +TPG ++VY TKK PK C V R++G+ +R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVLPGRLRGVVAVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115
P RLS+ ++ V + + +RI RAFL+EEQKIV KVLK Q +K
Sbjct: 61 PKVL--MRLSKTKKHVQQGLWWLHVRQVCPDRIKRAFLIEEQKIVVKVLKAQAQSQK 115
>sp|Q1WBV0|RL34_LAMPA 60S ribosomal protein L34 OS=Lama guanicoe pacos GN=RPL34 PE=3 SV=1
Length = 117
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 30/130 (23%)
Query: 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKL---------------VYQSTKKRASGPKCP 45
MVQRLTYR R SY T SN+ R+ +TPG + +++ ++ A GP C
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGQQDRLPLHQEGRESTYIRMWRVPRQTARGPCCE 60
Query: 46 VTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKK 105
Q + RLS+ ++ V+RAYGG + VR+RI RAFL+EEQKIV K
Sbjct: 61 T-----QVL----------MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVK 105
Query: 106 VLKIQKAKEK 115
VLK Q +K
Sbjct: 106 VLKAQAQSQK 115
>sp|Q8SSA2|RL34_ENCCU 60S ribosomal protein L34 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL34 PE=1 SV=1
Length = 110
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 12 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNR 71
+Y T+SN+ R V+TP GKLV + KK + +C + I +RPAE+ R ++S R
Sbjct: 11 TYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKVSARR 70
Query: 72 RTVNRAYGGVLSGGAVRERIIRAFLVEEQKIV 103
VNR YG G VRE+II AFL E++IV
Sbjct: 71 --VNRPYGATTCGRCVREKIISAFLGNEERIV 100
>sp|A1RXV1|RL34_THEPD 50S ribosomal protein L34e OS=Thermofilum pendens (strain Hrk 5)
GN=rpl34e PE=3 SV=1
Length = 91
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLS- 68
R + ++S + ++V+TPGG+L K+ PKC + G+ IQG+P L SRL
Sbjct: 3 RPALRSRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGVPKL------TSRLER 56
Query: 69 RNRRTVNRAYGGVLSGGAVRERI 91
R R R YGG L +R+ I
Sbjct: 57 RGVRMPTRPYGGYLCHECLRKGI 79
>sp|A2BME5|RL34_HYPBU 50S ribosomal protein L34e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl34e PE=3 SV=1
Length = 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 15 TKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTV 74
T+S + V+TPGG+ K+R +C + G+ + G+P LRP E + +L + +
Sbjct: 8 TRSLRRVYVRTPGGETKIHYEKRRPGPARCAICGRPLNGVPRLRPVELR--KLPKTAKRP 65
Query: 75 NRAYGGVLSGGAV 87
R YGGVL +
Sbjct: 66 ERMYGGVLCAECL 78
>sp|P54053|RL34_METJA 50S ribosomal protein L34e OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl34e PE=3 SV=1
Length = 89
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 25 TPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSG 84
TPGG++V +++ PKC + G + G+P RP E + +L +++R R YGG L
Sbjct: 18 TPGGRIVIHYKRRKPGKPKCAICGAELHGVPRGRPVEIR--KLPKSQRRPERPYGGYLCP 75
Query: 85 GAVRERII 92
++ +I
Sbjct: 76 RCLKRLMI 83
>sp|A5UL62|RL34_METS3 50S ribosomal protein L34e OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=rpl34e PE=3 SV=1
Length = 88
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 21 RVVK-TPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYG 79
RV K TPGG+ V + KK+ S C GK + G+P RP Y+ ++L+++ + NR YG
Sbjct: 13 RVYKNTPGGENVLRYKKKKPSKHVCAECGKLLHGVPRGRP--YEINKLAKSHKRPNRPYG 70
Query: 80 GVLSGGAVRERI 91
G L R+
Sbjct: 71 GYLCSSCARKHF 82
>sp|O26137|RL34_METTH 50S ribosomal protein L34e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl34e PE=3 SV=1
Length = 88
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y ++S + KTPGG+ V +K+ S C GK + G+P RP E + +LS++++
Sbjct: 6 YRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIR--KLSKSKK 63
Query: 73 TVNRAYGGVLSGGAVRE 89
NR YGG R+
Sbjct: 64 RPNRPYGGYYCSSCARK 80
>sp|Q8TZB2|RL34_METKA 50S ribosomal protein L34e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl34e PE=3
SV=1
Length = 113
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y ++S + +TPGG+ V KK + PKC G+R+ G+ R E K + ++ R
Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVELKNAPKTQKR- 64
Query: 73 TVNRAYGGVLSGGAVRERI 91
NR YGGVL R+ I
Sbjct: 65 -PNRPYGGVLCPECARKLI 82
>sp|Q2NFY3|RL34_METST 50S ribosomal protein L34e OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rpl34e PE=3 SV=1
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 24 KTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLS 83
+ PGG+ V KK+ S C GK + +P RP E + +LS+N+R NR YGG+
Sbjct: 17 RVPGGRKVEHYKKKKPSKHVCAKCGKVLDAVPRGRPYEIR--KLSKNQRRPNRPYGGMYC 74
Query: 84 GGAVRERI 91
+E I
Sbjct: 75 TNCTKEII 82
>sp|A3DND2|RL34_STAMF 50S ribosomal protein L34e OS=Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1) GN=rpl34e PE=3 SV=1
Length = 92
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSR 69
R T+S + V+TPGGK+V ++ +C + GK + G+P L P++ + +L++
Sbjct: 3 RPGLKTRSKRRVYVRTPGGKVVIHYEPRKPGPARCAICGKPLNGVPRLIPSKLR--KLAK 60
Query: 70 NRRTVNRAYGGVLS 83
+ R YGG +
Sbjct: 61 TEKRPERPYGGYIC 74
>sp|Q8ZTJ2|RL34_PYRAE 50S ribosomal protein L34e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=ribL34e PE=3 SV=1
Length = 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSR 69
R +Y ++S + VKTPGG+ V K+ PKCP+TG I G+ K R
Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKCPITGLPIGGM------NKKVYRFGI 56
Query: 70 NRRTVNRAYGGVLS 83
R +R YGGV S
Sbjct: 57 KIRAPSRPYGGVYS 70
>sp|A1RRJ4|RL34_PYRIL 50S ribosomal protein L34e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl34e PE=3 SV=1
Length = 84
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSR 69
R +Y ++S + V+TPGG+ V K+ PKCPVT + G+ H K R
Sbjct: 3 RPAYRSRSLRRVKVRTPGGRTVVHYEKRAKGVPKCPVTNLPLGGMNH------KVYRFGI 56
Query: 70 NRRTVNRAYGGVLS 83
+ R +R YGGV S
Sbjct: 57 SIRAPSRPYGGVFS 70
>sp|B1YAJ9|RL34_PYRNV 50S ribosomal protein L34e OS=Pyrobaculum neutrophilum (strain
DSM 2338 / JCM 9278 / V24Sta) GN=rpl34e PE=3 SV=1
Length = 84
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSR 69
R +Y ++S + V+TPGG+ K+ P+CP+TG I G+ K R
Sbjct: 3 RPAYRSRSVRRIKVRTPGGRTAVHYEKRAKGAPRCPITGLAIGGM------NKKIYRFGV 56
Query: 70 NRRTVNRAYGGVLS 83
+ R R YGGV S
Sbjct: 57 SNRAPTRPYGGVFS 70
>sp|A6USC2|RL34_METVS 50S ribosomal protein L34e OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rpl34e PE=3 SV=1
Length = 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 24 KTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLS 83
+ PG + V +K+ S KC G + G+P LR + S+LS+ +R RA+GG L
Sbjct: 17 RAPGNRRVLHIRRKKQSSAKCGACGALLNGVPSLRTVQV--SKLSKTQRRPERAFGGALC 74
Query: 84 GGAVRERII 92
V++ ++
Sbjct: 75 PKCVKKMMV 83
>sp|A3MV68|RL34_PYRCJ 50S ribosomal protein L34e OS=Pyrobaculum calidifontis (strain
JCM 11548 / VA1) GN=rpl34e PE=3 SV=1
Length = 84
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSR 69
R +Y ++S + VKTPGG+ V K+ PKC VTG+ + G+ K R
Sbjct: 3 RPAYRSRSLRRVKVKTPGGRTVVHYEKRAKGVPKCAVTGQPLGGM------NSKVYRFGI 56
Query: 70 NRRTVNRAYGGVLS 83
+ R +R YGGV+S
Sbjct: 57 STRAPSRPYGGVVS 70
>sp|O74006|RL34_PYRHO 50S ribosomal protein L34e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl34e PE=3 SV=2
Length = 91
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKR 64
Y ++S + + V+TPGG++V +K+ C + G+ + GIP RP E ++
Sbjct: 5 YRSRSWRRKYVRTPGGRVVVHFERKKPKIAHCAICGRPLNGIPRGRPVEMRK 56
>sp|Q9UZJ7|RL34_PYRAB 50S ribosomal protein L34e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl34e PE=3 SV=1
Length = 91
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y ++S + + V+TPGG++V +++ C + G+ + GIP RP E + +L + ++
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMR--KLPKTKK 62
Query: 73 TVNRAY 78
R Y
Sbjct: 63 RPERPY 68
>sp|Q02358|CAPSD_LRVLG Major capsid protein OS=Leishmania RNA virus 1 - 1 (isolate
Leishmania guyanensis) GN=ORF2 PE=3 SV=1
Length = 741
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 8 RTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67
R R+ + RV+ TP +++ + R G +C + KRIQ +P E R
Sbjct: 570 RFRNYLSEADGDVRVLNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVP-----EVARRYC 624
Query: 68 SRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117
R R +G + G + IIR F V KV+K+ K+ +L
Sbjct: 625 MMARYLQARTFGALTIG----DDIIRGF-----DKVDKVVKMHKSNNRLG 665
>sp|Q8U2L3|RL34_PYRFU 50S ribosomal protein L34e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl34e PE=1 SV=1
Length = 89
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKR 64
Y ++S + + V+TPGG++V +K+ C + G+ + GIP RP E ++
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRK 56
>sp|B6YSP0|RL34_THEON 50S ribosomal protein L34e OS=Thermococcus onnurineus (strain
NA1) GN=rpl34e PE=3 SV=1
Length = 90
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y ++S + + V+TPGG+ V +K+ C + G+ + G+P RP+E + +L + ++
Sbjct: 5 YRSRSWRRKYVRTPGGRTVIHFERKKPKIAHCAMCGRPLNGVPRGRPSELR--KLPKTKK 62
Query: 73 TVNRAYGGVLS 83
R Y +
Sbjct: 63 RPERPYPNLCP 73
>sp|Q5JJF7|RL34_PYRKO 50S ribosomal protein L34e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl34e PE=3 SV=1
Length = 90
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y ++S + + V+TPGG+ V +++ C + G+ + G+P RP+E + +L + ++
Sbjct: 5 YRSRSWRRKYVRTPGGRTVIHFERRKPKVAHCAMCGRPLNGVPRGRPSELR--KLPKTKK 62
Query: 73 TVNRAYGGVL 82
R Y +
Sbjct: 63 RPERPYPNLC 72
>sp|C5A259|RL34_THEGJ 50S ribosomal protein L34e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl34e PE=3 SV=1
Length = 89
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKR 64
Y ++S + + V+TPGG+ V +++ C + G+ + G+P RP+E ++
Sbjct: 5 YRSRSWRRKYVRTPGGRTVIHFERRKPKVAHCAMCGRPLNGVPRGRPSELRK 56
>sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis
GN=suv39h2 PE=2 SV=2
Length = 406
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 18 NQHRVVKTPGGKLVYQSTKKRASGPKCP 45
N+HR +K P G+ +Y+ + GP CP
Sbjct: 209 NEHRQIKIPPGRPIYECNSRCKCGPDCP 236
>sp|C6A186|RL34_THESM 50S ribosomal protein L34e OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=rpl34e PE=3 SV=1
Length = 88
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKR 64
+ ++S + + V+TPGG+ V +K+ C + G+ + GIP RP E ++
Sbjct: 5 HRSRSWRRKYVRTPGGRTVIHFERKKPKVAHCAMCGRPLNGIPRGRPNELRK 56
>sp|A9A697|RL34_METM6 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=rpl34e PE=3 SV=1
Length = 89
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 24 KTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLS 83
K PG + +K+ S C G + G+P R E ++L++ ++ RA+GG L
Sbjct: 17 KAPGNSSIVHYRRKKQSNAVCGACGALLNGVPRGRAVEI--TKLAKTQKRPERAFGGNLC 74
Query: 84 GGAVRERII 92
V++ ++
Sbjct: 75 PKCVKKMMV 83
>sp|Q6G5C9|RS2_BARHE 30S ribosomal protein S2 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rpsB PE=3 SV=1
Length = 257
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 63 KRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK 113
+R L R+R +NRA GG+ G+V + I F+++ K+ + IQ+AK
Sbjct: 134 ERLNLERDREKLNRALGGIKDMGSVPDLI---FIIDTN---KENIAIQEAK 178
>sp|A6VJT2|RL34_METM7 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rpl34e PE=3 SV=1
Length = 89
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y + S++ K PG + +K+ S C G + G+P R E ++L++ ++
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEI--TKLAKTQK 63
Query: 73 TVNRAYGGVLSGGAVRERII 92
RA+GG L V++ ++
Sbjct: 64 RPERAFGGNLCPKCVKKMMV 83
>sp|Q6FZN0|RS2_BARQU 30S ribosomal protein S2 OS=Bartonella quintana (strain Toulouse)
GN=rpsB PE=3 SV=1
Length = 257
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 63 KRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK 113
+R L R+R +NRA GG+ G+V + I F+++ K+ + IQ+AK
Sbjct: 134 ERLNLERDREKLNRALGGIKDMGSVPDLI---FIIDTN---KENIAIQEAK 178
>sp|A6UW33|RL34_META3 50S ribosomal protein L34e OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl34e PE=3 SV=1
Length = 89
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 26 PGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGG 85
PG K + + + S KC G + G+P R E ++LS+ + R YGG L
Sbjct: 19 PGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEI--AKLSKTEKRPERPYGGFLCPK 76
Query: 86 AVRERII 92
++ +I
Sbjct: 77 CLKRLMI 83
>sp|A4FYK0|RL34_METM5 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rpl34e PE=3 SV=1
Length = 89
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
Y + S++ K PG + +K+ S C G + G+P R E ++L++ +
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEI--TKLAKTEK 63
Query: 73 TVNRAYGGVLSGGAVRERII 92
RA+GG L V++ ++
Sbjct: 64 RPERAFGGNLCPKCVKKMMV 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,934,070
Number of Sequences: 539616
Number of extensions: 1475964
Number of successful extensions: 3822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3757
Number of HSP's gapped (non-prelim): 62
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)