Query 033398
Match_columns 120
No_of_seqs 100 out of 238
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_g 60S ribosomal protein L 100.0 2.7E-64 9.1E-69 370.0 10.9 115 1-117 1-115 (121)
2 4a18_L RPL34; ribosome, eukary 100.0 2.4E-63 8.1E-68 365.8 9.8 116 1-118 1-118 (123)
3 3iz5_i 60S ribosomal protein L 100.0 1.2E-63 4.1E-68 365.7 -1.5 115 1-115 1-115 (119)
4 3j21_d 50S ribosomal protein L 100.0 2.4E-41 8.2E-46 237.1 7.5 83 10-95 2-84 (89)
5 2vqe_N 30S ribosomal protein S 53.4 10 0.00035 24.0 2.7 19 72-92 31-49 (61)
6 1joc_A EEA1, early endosomal a 35.3 20 0.00068 25.0 2.1 35 40-89 68-102 (125)
7 2xzm_N RPS29E; ribosome, trans 31.8 42 0.0014 20.8 3.0 20 72-91 27-46 (55)
8 1qxf_A GR2, 30S ribosomal prot 30.3 47 0.0016 21.6 3.1 32 19-51 4-36 (66)
9 1bgf_A STAT-4; transcription f 30.1 36 0.0012 24.1 2.8 16 90-105 104-119 (124)
10 3t7l_A Zinc finger FYVE domain 29.1 33 0.0011 22.4 2.3 37 41-92 20-56 (90)
11 2yw8_A RUN and FYVE domain-con 28.2 31 0.001 22.1 1.9 36 40-90 18-53 (82)
12 3bbn_N Ribosomal protein S14; 28.0 36 0.0012 23.3 2.4 18 72-91 70-87 (100)
13 1u5k_A Hypothetical protein; O 27.8 18 0.00062 27.0 0.9 29 41-88 150-178 (244)
14 1y02_A CARP2, FYVE-ring finger 27.1 33 0.0011 24.1 2.1 35 41-90 19-53 (120)
15 2k5c_A Uncharacterized protein 27.0 12 0.00041 25.9 -0.2 12 41-52 8-19 (95)
16 1e7l_A GP49, recombination end 26.7 18 0.0006 27.1 0.6 45 41-89 20-64 (157)
17 3ung_C CMR2DHD; ferredoxin fol 26.6 86 0.0029 28.4 5.1 51 40-99 266-316 (693)
18 3iz6_N 40S ribosomal protein S 26.4 56 0.0019 20.3 2.9 36 33-89 9-45 (56)
19 2crr_A Stromal membrane-associ 25.3 34 0.0012 24.6 1.9 32 38-88 26-57 (141)
20 2olm_A Nucleoporin-like protei 24.4 31 0.001 24.8 1.5 32 38-88 22-53 (140)
21 1wig_A KIAA1808 protein; LIM d 24.4 35 0.0012 20.7 1.6 13 41-53 5-17 (73)
22 2jrp_A Putative cytoplasmic pr 24.1 20 0.00069 24.0 0.5 16 42-57 32-47 (81)
23 2iqj_A Stromal membrane-associ 24.1 28 0.00096 24.9 1.3 32 38-88 24-55 (134)
24 3j20_P 30S ribosomal protein S 23.9 74 0.0025 19.8 3.1 18 73-90 29-46 (56)
25 3mpx_A FYVE, rhogef and PH dom 23.8 17 0.00057 29.0 0.0 42 41-97 375-416 (434)
26 3u5c_b RP61, YS20, 40S ribosom 23.1 1.8E+02 0.006 19.5 5.6 36 15-51 27-63 (82)
27 2owa_A Arfgap-like finger doma 22.9 30 0.001 24.9 1.3 33 36-87 31-63 (138)
28 2crw_A ARF GAP 3, ADP-ribosyla 22.2 36 0.0012 24.9 1.6 32 37-87 25-56 (149)
29 1l8d_A DNA double-strand break 22.2 23 0.00079 23.4 0.5 11 43-53 49-59 (112)
30 1x62_A C-terminal LIM domain p 21.5 52 0.0018 20.0 2.0 15 39-53 13-27 (79)
31 2b0o_E UPLC1; arfgap, structur 21.5 35 0.0012 25.7 1.4 36 33-87 34-69 (301)
32 2qfa_B Borealin; three-helical 21.2 45 0.0016 21.2 1.7 13 86-98 1-13 (62)
33 1z2q_A LM5-1; membrane protein 21.0 61 0.0021 20.8 2.3 36 40-90 20-55 (84)
34 3u5c_d S36, YS29, 40S ribosoma 20.9 61 0.0021 20.2 2.2 18 73-90 29-46 (56)
35 1x4u_A Zinc finger, FYVE domai 20.7 62 0.0021 20.6 2.3 36 40-90 13-48 (84)
36 3dwd_A ADP-ribosylation factor 20.5 39 0.0013 24.9 1.4 35 34-87 31-65 (147)
37 1j2o_A FLIN2, fusion of rhombo 20.2 46 0.0016 21.9 1.6 16 39-54 1-16 (114)
38 2xzm_6 RPS27E; ribosome, trans 20.0 92 0.0032 20.9 3.1 34 17-51 27-61 (81)
No 1
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=100.00 E-value=2.7e-64 Score=370.01 Aligned_cols=115 Identities=54% Similarity=0.817 Sum_probs=110.9
Q ss_pred CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG 80 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG 80 (120)
||||||||||++|||+||++++++||||+|||||++|+++.|+|||||.+|+||+++||.+++ +||+++|+|||||||
T Consensus 1 M~qR~tyrrR~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~--rlsK~~KtvsRaYGG 78 (121)
T 3u5e_g 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYA--TVSKTHKTVSRAYGG 78 (121)
T ss_dssp -CCCCCCSSSCCSCCGGGBCCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGG--SSCGGGSCCSSTTTT
T ss_pred CCcceEecCcCCCcCCcCeeEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHH--hcccCCCCcccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033398 81 VLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA 117 (120)
Q Consensus 81 ~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~~~ 117 (120)
++||+||+|||++||||||||||++||++|+++++++
T Consensus 79 ~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~ 115 (121)
T 3u5e_g 79 SRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKS 115 (121)
T ss_dssp TSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987765
No 2
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=100.00 E-value=2.4e-63 Score=365.79 Aligned_cols=116 Identities=50% Similarity=0.759 Sum_probs=105.8
Q ss_pred CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCC--CCCCCccCCChhhhhhhccccCCCcccccc
Q 033398 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTG--KRIQGIPHLRPAEYKRSRLSRNRRTVNRAY 78 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg--~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaY 78 (120)
||||||||||++|||+||++++++||||+|||||++|+++.|+||||| .+|+||+++||.+++ +|++++|+|||||
T Consensus 1 m~qR~tyrrr~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~cg~~~~L~GI~~~RP~e~~--rlsK~~KtvsRaY 78 (123)
T 4a18_L 1 MAQRITYRRRCSYNTRSNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYA--TIARSAKTVSRVY 78 (123)
T ss_dssp -CCCCCCSSSCCSCCGGGCEEEEECTTSCEEEEECCCCCCCCBCCSTTTCCBCSSSCCCCTTGGG--TSCHHHHCCSSTT
T ss_pred CCcceEecCCCCCcCCCCeeEEEECCCCCEEEEEeccCCCCCcCCCCCCccccCCcCCCcHHHHH--hccccCCCcccCC
Confidence 999999999999999999999999999999999999999999999999 999999999999999 9999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033398 79 GGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAS 118 (120)
Q Consensus 79 GG~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~~~~ 118 (120)
||++||+||+|||++||||||||||++||++|++++++++
T Consensus 79 GG~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~~ 118 (123)
T 4a18_L 79 GGELCHTCVRSRIIRAFLTEEVKIVKRKMISKPKTDKKKK 118 (123)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998877654
No 3
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=100.00 E-value=1.2e-63 Score=365.68 Aligned_cols=115 Identities=92% Similarity=1.316 Sum_probs=110.5
Q ss_pred CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398 1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG 80 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG 80 (120)
||||||||||++|||+||++++++||||+|||||++|++++|+||+||.+|+||+++||.|+++.+|++++|+|||||||
T Consensus 1 m~qR~tyrrr~sYnTrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG 80 (119)
T 3iz5_i 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGG 80 (119)
T ss_dssp CHHHHHHHHCSCCSSSSCSSBCCCCSSCCCCBCCCSCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCC
T ss_pred CCcceEecccCcccCCCCeeEEEECCCCCEEEEEeccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999222999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033398 81 VLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115 (120)
Q Consensus 81 ~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~ 115 (120)
++||+||+|+|++|||+||||||++||++|+++++
T Consensus 81 ~lC~~CVr~rI~rAFLiEEqKivkkvlk~~~~~~k 115 (119)
T 3iz5_i 81 VLSGPAVRERIIRAFLVEEQKIVKKVLKIQKTKEK 115 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTTTSSCCCCCSCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999887554
No 4
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-41 Score=237.08 Aligned_cols=83 Identities=25% Similarity=0.550 Sum_probs=81.3
Q ss_pred CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89 (120)
Q Consensus 10 r~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~ 89 (120)
+++|||+||+++++|||||+|||||+||+++.|+|||||.+|+||+++||.|++ +|+|++|+|||||| ++||+||+|
T Consensus 2 ~p~Y~TrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~--rlsK~~KtvsRaYG-~lC~~Cvr~ 78 (89)
T 3j21_d 2 KPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMR--KLPKTKKRPERPMP-HLCPRCMRK 78 (89)
T ss_dssp CCCSCCSSCCEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGG--GSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred CCccccccCceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHH--hcccCCCCcCCCcc-cchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999 99999999999999 999999999
Q ss_pred HHHHHH
Q 033398 90 RIIRAF 95 (120)
Q Consensus 90 rIvrAF 95 (120)
+|++|-
T Consensus 79 rI~~~~ 84 (89)
T 3j21_d 79 VMKEQI 84 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 5
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=53.39 E-value=10 Score=24.00 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.0
Q ss_pred CccccccCCcchHHHHHHHHH
Q 033398 72 RTVNRAYGGVLSGGAVRERII 92 (120)
Q Consensus 72 ktvsRaYGG~lC~kcVr~rIv 92 (120)
+-+-|.|| ||--|.+|.-.
T Consensus 31 rg~iRkfg--lcR~~FRe~A~ 49 (61)
T 2vqe_N 31 RSVYRFFG--LCRICLRELAH 49 (61)
T ss_dssp TTCCTTTS--SCHHHHHHHHH
T ss_pred ceeeccCc--eeHHHHHHHHh
Confidence 45778899 99999998643
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.26 E-value=20 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~ 89 (120)
..+.|..|+.+..-+ +.|+--|.=|.++|+.|...
T Consensus 68 ~~~~C~~C~~~Fs~~---------------~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVT---------------VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSS---------------SCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccc---------------cccccCCCCCeEEChHHhCC
Confidence 355699999876522 13788999999999999654
No 7
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=31.78 E-value=42 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.4
Q ss_pred CccccccCCcchHHHHHHHH
Q 033398 72 RTVNRAYGGVLSGGAVRERI 91 (120)
Q Consensus 72 ktvsRaYGG~lC~kcVr~rI 91 (120)
+-+-|.||=.||--|.||.-
T Consensus 27 rg~iRkfgl~lcR~cFRe~A 46 (55)
T 2xzm_N 27 QGLITKYEMMTCRRCFREQA 46 (55)
T ss_dssp STTCCCSSSCCCHHHHHHHH
T ss_pred cchHHHhCCchhhHHHHHHH
Confidence 35678899999999999853
No 8
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=30.35 E-value=47 Score=21.59 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.5
Q ss_pred eeEEeecCC-CceEEEeeecCCCCCCCCCCCCCC
Q 033398 19 QHRVVKTPG-GKLVYQSTKKRASGPKCPVTGKRI 51 (120)
Q Consensus 19 k~~~vrTPG-Grlv~~y~KK~~~~pkC~~cg~~L 51 (120)
....|+=|| +.+.+.| -.-.++..|..||..|
T Consensus 4 ~Fm~VKCp~C~niq~VF-ShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 4 RFVKVKCPDCEHEQVIF-DHPSTIVKCIICGRTV 36 (66)
T ss_dssp CEEEEECTTTCCEEEEE-SSCSSCEECSSSCCEE
T ss_pred eeEEEECCCCCCceEEE-ecCceEEEcccCCCEE
Confidence 367889999 8888888 4566677799999877
No 9
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=30.09 E-value=36 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 033398 90 RIIRAFLVEEQKIVKK 105 (120)
Q Consensus 90 rIvrAFL~EEqkivk~ 105 (120)
+||+-+|-+|++||.+
T Consensus 104 ~~i~~~L~~E~~iv~~ 119 (124)
T 1bgf_A 104 VVISNCLREERRILAA 119 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999999954
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.12 E-value=33 Score=22.45 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHHHH
Q 033398 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERII 92 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~rIv 92 (120)
...|..|+....-+. .|+--|.=|+++|+.|...++.
T Consensus 20 ~~~C~~C~~~F~~~~---------------RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 20 APNCMNCQVKFTFTK---------------RRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp CCBCTTTCCBCCSSS---------------CCEECTTTCCEECGGGSCEEEE
T ss_pred CCcCcCCCCcccchh---------------hCccccCCCCEECCcccCCeee
Confidence 456999988765221 3688899999999999876553
No 11
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.16 E-value=31 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~r 90 (120)
..+.|..|+....-+ +.|+--|.=|.++|+.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~---------------~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSIS---------------RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTT---------------BCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCc---------------cccccCCCCCCEEChHHhCCe
Confidence 456699999876421 136888999999999997543
No 12
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.95 E-value=36 Score=23.32 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=13.7
Q ss_pred CccccccCCcchHHHHHHHH
Q 033398 72 RTVNRAYGGVLSGGAVRERI 91 (120)
Q Consensus 72 ktvsRaYGG~lC~kcVr~rI 91 (120)
+-+-|.|| ||--|.++..
T Consensus 70 rg~~r~fg--lsR~~fRe~a 87 (100)
T 3bbn_N 70 RANIRDFG--LSGHILREMV 87 (100)
T ss_dssp SSBCTTTC--SBTTHHHHHH
T ss_pred ceeecccC--cHHHHHHHHH
Confidence 46778888 8888888753
No 13
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=27.81 E-value=18 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
...|+.||.+ +. -..+-..||.+|..|..
T Consensus 150 l~~C~~cg~~--~~-----------------~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 150 TARCARCGAP--DP-----------------EHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp CSBCTTTCCB--SC-----------------CEECTTTSSEECTTTCS
T ss_pred cCccccCCCC--CC-----------------CcEecccCEEECcccCC
Confidence 3469999987 21 13445689999998843
No 14
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.09 E-value=33 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHH
Q 033398 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~r 90 (120)
.+.|-.|+.+..=+. .|+--|.=|+++|++|...+
T Consensus 19 ~~~C~~C~~~Fs~~~---------------RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANTA---------------RKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSGG---------------GCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCcccccc---------------ccccCCCCCCeeCHHHhCCC
Confidence 367999998764221 37889999999999996544
No 15
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.02 E-value=12 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 033398 41 GPKCPVTGKRIQ 52 (120)
Q Consensus 41 ~pkC~~cg~~L~ 52 (120)
-++|+.||.+|.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 356999999875
No 16
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=26.66 E-value=18 Score=27.05 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~ 89 (120)
...|+.|+.+|.|.... ..+= .=..-.=...--+=|.||..|=.-
T Consensus 20 ~g~C~IC~~~l~~~~~~--~~vD--HdH~~~g~~tG~VRGlLC~~CN~~ 64 (157)
T 1e7l_A 20 NGKCLICQRELNPDVQA--NHLD--HDHELNGPKAGKVRGLLCNLCDAA 64 (157)
T ss_dssp TTBCTTTCCBCCSSGGG--SEEE--ECCCCSSTTTTBEEEEECHHHHHH
T ss_pred CCcCcccCCcccccccc--cccc--CCCCCCCCCCCcchhhccHhHhch
Confidence 45799999999874321 1110 000000002223448999999653
No 17
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=26.55 E-value=86 Score=28.40 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHHHHHHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEE 99 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~rIvrAFL~EE 99 (120)
.+-+|..||..+.=....+-.......+.. |=.||+-|.-.|..--||.||
T Consensus 266 ~g~kc~lcGE~~~~~~~~~~~~~~~~~~k~---------~E~Lc~~c~~KR~~p~~~~~~ 316 (693)
T 3ung_C 266 KGWKCHVCGENLAIFGDMYDHDNLKSLWLD---------EEPLCPMCLIKRYYPVWIRSK 316 (693)
T ss_dssp -CCBCSSSSSSBCTTTTTSCHHHHHHHBGG---------GCCCCHHHHHHHHHHHHHHHH
T ss_pred CCceeeccCcccccccchhhhhhhhhhccc---------ccccchhHHHHHhhHHHHHhh
Confidence 556799999875533333322211111122 338999999999999997766
No 18
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=26.40 E-value=56 Score=20.33 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=25.0
Q ss_pred EeeecCCCCC-CCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398 33 QSTKKRASGP-KCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89 (120)
Q Consensus 33 ~y~KK~~~~p-kC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~ 89 (120)
-+.++-+.+. .|..||.+ .-+-|.||=.+|--|.||
T Consensus 9 sh~r~~G~g~~rC~vcGr~---------------------~g~iRkfGL~~cR~cfRe 45 (56)
T 3iz6_N 9 SHPKNYGAGSRVCRVCGNS---------------------HGLIRKYGLMCCRQCFRS 45 (56)
T ss_dssp CCCCCCCCCCCCCSSCCCS---------------------CCCTTTTSCTTHHHHHHT
T ss_pred CCccccCCCcceeecCCCC---------------------cccccccCCcHHHHHHHH
Confidence 3445666644 49999875 234567988889999886
No 19
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.26 E-value=34 Score=24.62 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 38 RASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 38 ~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
.+.-..|+|||.+- |. -+|=.||=.+|-.|--
T Consensus 26 ~p~N~~CaDCga~~-------P~------------WaS~n~GvfiC~~Csg 57 (141)
T 2crr_A 26 EEDNKYCADCEAKG-------PR------------WASWNIGVFICIRCAG 57 (141)
T ss_dssp SGGGSSCSSSCCSS-------CC------------SEETTTTEECCHHHHH
T ss_pred CccCCcCCCCCCCC-------CC------------eEEeccCeEEhhhhhH
Confidence 34445799998762 21 2334589999998853
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=24.41 E-value=31 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 38 RASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 38 ~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
.+.--.|+|||.+- |. -+|=.||=.+|-.|--
T Consensus 22 ~p~N~~CaDCg~~~-------P~------------WaS~n~GvfiC~~Csg 53 (140)
T 2olm_A 22 LPHNRKCFDCDQRG-------PT------------YVNMTVGSFVCTSCSG 53 (140)
T ss_dssp SGGGGSCTTTCSSC-------CC------------EEETTTTEEECHHHHH
T ss_pred CcCCCcCCCCCCCC-------CC------------ceeeccCEEEchhccc
Confidence 34445699999762 11 2234578888887753
No 21
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.40 E-value=35 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCC
Q 033398 41 GPKCPVTGKRIQG 53 (120)
Q Consensus 41 ~pkC~~cg~~L~G 53 (120)
.++|+.|+.+|.|
T Consensus 5 ~~~C~~C~~~I~~ 17 (73)
T 1wig_A 5 SSGCDSCEKYITG 17 (73)
T ss_dssp CCSCSSSCCCCSS
T ss_pred cCCcccCCCEecC
Confidence 5789999998887
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.13 E-value=20 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCccCC
Q 033398 42 PKCPVTGKRIQGIPHL 57 (120)
Q Consensus 42 pkC~~cg~~L~GI~~~ 57 (120)
+-|++||.+|+-.++-
T Consensus 32 afCPeCgq~Le~lkAC 47 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKAC 47 (81)
T ss_dssp EECSSSCSCCCEEEET
T ss_pred ccCcchhhHHHHHHhc
Confidence 3699999999877653
No 23
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.08 E-value=28 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 38 RASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 38 ~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
.+.-..|+|||.+- |. -+|=.||=.+|..|--
T Consensus 24 ~p~N~~CaDCg~~~-------P~------------WaS~n~GvfiC~~Csg 55 (134)
T 2iqj_A 24 EEDNKFCADCQSKG-------PR------------WASWNIGVFICIRCAG 55 (134)
T ss_dssp SGGGGBCTTTCCBS-------CC------------EEETTTTEEECHHHHH
T ss_pred CcCCCcCCcCcCCC-------CC------------eEEecCCEEEhHhhhH
Confidence 34445699999763 21 2234689999988853
No 24
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.86 E-value=74 Score=19.83 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.8
Q ss_pred ccccccCCcchHHHHHHH
Q 033398 73 TVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 73 tvsRaYGG~lC~kcVr~r 90 (120)
-+-|.||=.+|--|.||.
T Consensus 29 g~iRkfGL~~cR~cfRe~ 46 (56)
T 3j20_P 29 PIIRIQGLMLCRHCFREV 46 (56)
T ss_dssp SCCCTTTCCCCHHHHHHH
T ss_pred ccccccCChHHHHHHHHH
Confidence 455789999999999985
No 25
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.84 E-value=17 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHHHHHHHHH
Q 033398 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLV 97 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~rIvrAFL~ 97 (120)
...|..|+.+..=. ..++-.|.=|+++|..|...++.-.|..
T Consensus 375 ~~~c~~c~~~f~~~---------------~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~ 416 (434)
T 3mpx_A 375 VMMCMNCGCDFSLT---------------LRRHHCHACGKIVCRNCSRNKYPLKYLK 416 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCc---------------chhhhcccCcCEeehhhCCCeeeCCCCC
Confidence 45699998765311 1268899999999999998877655543
No 26
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=23.06 E-value=1.8e+02 Score=19.54 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.8
Q ss_pred CCCceeEEeecCC-CceEEEeeecCCCCCCCCCCCCCC
Q 033398 15 TKSNQHRVVKTPG-GKLVYQSTKKRASGPKCPVTGKRI 51 (120)
Q Consensus 15 TrSnk~~~vrTPG-Grlv~~y~KK~~~~pkC~~cg~~L 51 (120)
+..-....|+=|| +.+.+.| -.-.++..|..||..|
T Consensus 27 ~PnS~Fm~VkCp~C~~~q~VF-Sha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 27 GPRSYFLDVKCPGCLNITTVF-SHAQTAVTCESCSTIL 63 (82)
T ss_dssp CCCCCEEEEECTTSCSCEEEE-SBCSSCCCCSSSCCCC
T ss_pred CCCCcEEEEECCCCCCeeEEE-ecCCeEEEccccCCEE
Confidence 3445678899999 8888888 4566777799999876
No 27
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=22.94 E-value=30 Score=24.93 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=21.3
Q ss_pred ecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHH
Q 033398 36 KKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAV 87 (120)
Q Consensus 36 KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcV 87 (120)
.+.+.-..|+|||.+- |. =+|=.||=.+|-.|-
T Consensus 31 ~~~p~N~~CaDCga~~-------P~------------WaS~n~GvfiC~~Cs 63 (138)
T 2owa_A 31 RNRPENRTCFDCESRN-------PT------------WLSLSFAVFICLNCS 63 (138)
T ss_dssp HHSGGGGBCTTTCCBS-------CC------------EEETTTTEEECHHHH
T ss_pred HcCcCCCcCCCCcCCC-------CC------------eEEecCCEEEhHhhh
Confidence 3444555799999762 21 234468888888885
No 28
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=36 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=20.5
Q ss_pred cCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHH
Q 033398 37 KRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAV 87 (120)
Q Consensus 37 K~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcV 87 (120)
+.+.-..|+|||.+-+- =+|=.||=.+|-.|-
T Consensus 25 ~~p~N~~CaDCga~~P~-------------------WaS~n~GvfiC~~Cs 56 (149)
T 2crw_A 25 SVPTNKVCFDCGAKNPS-------------------WASITYGVFLCIDCS 56 (149)
T ss_dssp HSTTTSBCSSSCCBSCC-------------------CEETTTTEECCHHHH
T ss_pred cCcCCCcCCCCcCCCCC-------------------cEEeccCEEEchhcc
Confidence 34555679999976321 223357888888874
No 29
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.22 E-value=23 Score=23.43 Aligned_cols=11 Identities=45% Similarity=1.144 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q 033398 43 KCPVTGKRIQG 53 (120)
Q Consensus 43 kC~~cg~~L~G 53 (120)
.||.||.+|+.
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 49999999873
No 30
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.47 E-value=52 Score=20.05 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCC
Q 033398 39 ASGPKCPVTGKRIQG 53 (120)
Q Consensus 39 ~~~pkC~~cg~~L~G 53 (120)
...++|+.|+++|.|
T Consensus 13 ~~~~~C~~C~~~I~~ 27 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG 27 (79)
T ss_dssp CCCCCCSSSCCCCCS
T ss_pred CCCCccccCCCCccC
Confidence 456889999999887
No 31
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=21.46 E-value=35 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=23.9
Q ss_pred EeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHH
Q 033398 33 QSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAV 87 (120)
Q Consensus 33 ~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcV 87 (120)
....+.+.-..|+|||.+-+ . -+|=.||-.+|..|-
T Consensus 34 ~~~~~~~~n~~c~dc~~~~p---~----------------w~s~~~g~~~c~~cs 69 (301)
T 2b0o_E 34 AEVKSRPGNSQCCDCGAADP---T----------------WLSTNLGVLTCIQCS 69 (301)
T ss_dssp HHHHTSTTTTBCTTTCCBSC---C----------------EEETTTTEEECHHHH
T ss_pred HHHhcCCCCCcCCCCCCCCC---C----------------eEEeecCeEEcHHHH
Confidence 33456667778999997521 1 123468889999984
No 32
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=21.23 E-value=45 Score=21.22 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 033398 86 AVRERIIRAFLVE 98 (120)
Q Consensus 86 cVr~rIvrAFL~E 98 (120)
|||++.+.|||.+
T Consensus 1 ~~r~~KLasFLkD 13 (62)
T 2qfa_B 1 SLRRRKLASFLKD 13 (62)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHH
Confidence 7999999999975
No 33
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.02 E-value=61 Score=20.76 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~r 90 (120)
....|..|+....=+ +.|+--|.=|.++|+.|...+
T Consensus 20 ~~~~C~~C~~~Fs~~---------------~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT---------------VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTT---------------SCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccc---------------hhcccccCCCcEEChHHhCCe
Confidence 455699998875421 137888999999999997654
No 34
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=20.88 E-value=61 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.9
Q ss_pred ccccccCCcchHHHHHHH
Q 033398 73 TVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 73 tvsRaYGG~lC~kcVr~r 90 (120)
-+-|.||=.+|--|.||.
T Consensus 29 g~iRkfGl~lcR~cfRe~ 46 (56)
T 3u5c_d 29 GLIRKYGLNICRQCFREK 46 (56)
T ss_dssp SEECGGGCCEEHHHHHHH
T ss_pred ccccccCcchhHHHHHHH
Confidence 456789999999999985
No 35
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=62 Score=20.65 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRER 90 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~r 90 (120)
..+.|..|+.+..=+ +.|+--|.=|.++|+.|...+
T Consensus 13 ~~~~C~~C~~~F~~~---------------~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVL---------------KKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSS---------------SCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccc---------------hhhhhhcCCCcEEChhhcCCc
Confidence 456688888876321 136778888888888886543
No 36
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=20.55 E-value=39 Score=24.86 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=23.6
Q ss_pred eeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHH
Q 033398 34 STKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAV 87 (120)
Q Consensus 34 y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcV 87 (120)
-..+.+.-..|+|||.+- |. =+|=.||=.+|-.|-
T Consensus 31 ~L~~~p~N~~CaDCga~~-------P~------------WaS~nlGvfiC~~CS 65 (147)
T 3dwd_A 31 EVRVQDENNVCFECGAFN-------PQ------------WVSVTYGIWICLECS 65 (147)
T ss_dssp HHHTSTTTTBCTTTCCBS-------CC------------EEETTTTEEECHHHH
T ss_pred HHHcCcCCCccCCCCCCC-------CC------------eEEecccEeEhHhhC
Confidence 344556666799999862 21 123368999999996
No 37
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.25 E-value=46 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCc
Q 033398 39 ASGPKCPVTGKRIQGI 54 (120)
Q Consensus 39 ~~~pkC~~cg~~L~GI 54 (120)
++.++|+.|++++.+-
T Consensus 1 g~~~~C~~C~~~I~~~ 16 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDR 16 (114)
T ss_dssp CCCBCBSSSCSCBCSS
T ss_pred CcCCCCcCCCCeeCCc
Confidence 3567777777777653
No 38
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=20.04 E-value=92 Score=20.88 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=26.2
Q ss_pred CceeEEeecCC-CceEEEeeecCCCCCCCCCCCCCC
Q 033398 17 SNQHRVVKTPG-GKLVYQSTKKRASGPKCPVTGKRI 51 (120)
Q Consensus 17 Snk~~~vrTPG-Grlv~~y~KK~~~~pkC~~cg~~L 51 (120)
......|+=|| +.+.+.| -.-.++..|..||..|
T Consensus 27 nS~Fm~VkCp~C~n~q~VF-ShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 27 NSYFMDVKCAQCQNIQMIF-SNAQSTIICEKCSAIL 61 (81)
T ss_dssp SCCEEEEECSSSCCEEEEE-TTCSSCEECSSSCCEE
T ss_pred CCcEEEeECCCCCCeeEEE-ecCccEEEccCCCCEE
Confidence 44568899999 8888888 4556666799999766
Done!