Query 033398
Match_columns 120
No_of_seqs 100 out of 238
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 22:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3ha1 g.39.1.3 (A:8-42) Leup 74.1 0.63 4.6E-05 25.4 1.4 13 41-53 8-20 (35)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 66.2 1.2 8.9E-05 24.3 1.4 13 44-56 2-14 (33)
3 d2dara2 g.39.1.3 (A:8-52) PDZ 61.2 1.9 0.00014 25.0 1.6 15 39-53 16-30 (45)
4 d1u5sb1 g.39.1.3 (B:72-102) Pi 53.5 1.4 0.0001 23.7 0.1 14 40-53 4-17 (31)
5 d2dj7a1 g.39.1.3 (A:44-74) Act 48.6 3.1 0.00023 22.3 1.1 11 43-53 1-11 (31)
6 d1dcqa2 g.45.1.1 (A:247-368) P 46.0 3.4 0.00025 27.2 1.2 34 36-88 10-43 (122)
7 d1u5ka2 g.45.1.2 (A:81-237) Re 44.7 4.1 0.0003 27.0 1.5 12 77-88 87-98 (157)
8 d1j2oa1 g.39.1.3 (A:1-30) Rhom 39.3 6.2 0.00045 20.9 1.4 14 39-52 1-14 (30)
9 d2c7na1 g.39.1.15 (A:18-73) Ra 34.2 41 0.003 19.7 4.9 12 81-92 16-27 (56)
10 d1x4la1 g.39.1.3 (A:8-36) Four 30.4 9.6 0.0007 19.9 1.2 15 44-58 1-15 (29)
11 d1joca1 g.50.1.1 (A:1348-1411) 28.1 16 0.0012 21.1 2.1 35 40-89 7-41 (64)
12 d1y02a2 g.50.1.1 (A:20-70) Rif 27.7 17 0.0013 20.4 2.1 32 42-88 1-32 (51)
13 d1bgfa_ a.90.1.1 (A:) Transcri 25.8 22 0.0016 23.5 2.8 16 90-105 104-119 (124)
14 d1wika_ c.47.1.1 (A:) Thioredo 21.9 20 0.0015 22.4 1.8 19 31-49 17-35 (109)
15 d1x68a1 g.39.1.3 (A:8-36) Four 21.7 19 0.0014 18.7 1.3 15 44-58 1-15 (29)
16 d1qxfa_ g.41.8.4 (A:) Ribosoma 21.7 36 0.0026 20.0 2.8 32 19-51 4-36 (58)
17 d2dloa1 g.39.1.3 (A:8-42) Thyr 21.0 17 0.0012 19.7 1.0 14 39-52 6-19 (35)
18 d1ibia2 g.39.1.3 (A:145-175) C 21.0 13 0.00096 19.5 0.6 11 43-53 2-12 (31)
19 d1rutx1 g.39.1.3 (X:19-48) LIM 20.2 20 0.0014 18.7 1.2 12 41-52 2-13 (30)
20 d1wfka_ g.50.1.1 (A:) Zinc fin 20.1 22 0.0016 21.9 1.6 38 39-91 7-44 (88)
No 1
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.14 E-value=0.63 Score=25.35 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCC
Q 033398 41 GPKCPVTGKRIQG 53 (120)
Q Consensus 41 ~pkC~~cg~~L~G 53 (120)
+|+|+.|+.+|-|
T Consensus 8 apkC~~C~~~I~g 20 (35)
T d1x3ha1 8 SPKCGGCNRPVLE 20 (35)
T ss_dssp SCBCTTTCCBCCS
T ss_pred ChhhhhcCCcccc
Confidence 6899999999987
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.23 E-value=1.2 Score=24.30 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccC
Q 033398 44 CPVTGKRIQGIPH 56 (120)
Q Consensus 44 C~~cg~~L~GI~~ 56 (120)
|..|+..|.|||=
T Consensus 2 CvvC~~~LDGvPF 14 (33)
T d2dloa2 2 CVVCHRGLDGIPF 14 (33)
T ss_dssp CSSSCCBCTTSCE
T ss_pred eeEcCcccCCCcE
Confidence 8899999999983
No 3
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.16 E-value=1.9 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCC
Q 033398 39 ASGPKCPVTGKRIQG 53 (120)
Q Consensus 39 ~~~pkC~~cg~~L~G 53 (120)
...|.|+.|++++.|
T Consensus 16 ~r~P~C~~C~~pI~g 30 (45)
T d2dara2 16 KRTPMCAHCNQVIRG 30 (45)
T ss_dssp TCCCBBSSSCCBCCS
T ss_pred CCCeeccccCCcccC
Confidence 456889999999988
No 4
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.51 E-value=1.4 Score=23.74 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCC
Q 033398 40 SGPKCPVTGKRIQG 53 (120)
Q Consensus 40 ~~pkC~~cg~~L~G 53 (120)
..|.|+.|.+|+-|
T Consensus 4 g~p~C~~C~~PI~~ 17 (31)
T d1u5sb1 4 GVPICGACRRPIEG 17 (31)
T ss_dssp CCCEETTTTEECCS
T ss_pred CCcchhhcCCchhh
Confidence 46889999999988
No 5
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.61 E-value=3.1 Score=22.29 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=10.1
Q ss_pred CCCCCCCCCCC
Q 033398 43 KCPVTGKRIQG 53 (120)
Q Consensus 43 kC~~cg~~L~G 53 (120)
+|-.|+..|+|
T Consensus 1 kC~~C~~vL~g 11 (31)
T d2dj7a1 1 KCQTCSVILTG 11 (31)
T ss_dssp BCSSSCCBCSS
T ss_pred CccccCccccc
Confidence 59999999999
No 6
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.00 E-value=3.4 Score=27.18 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=22.9
Q ss_pred ecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 36 KKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 36 KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
.+.+.--.|+|||.+-+ .-+|=.||=.+|..|--
T Consensus 10 ~~~p~N~~CaDC~~~~p-------------------~w~s~n~GvfvC~~Csg 43 (122)
T d1dcqa2 10 QRMTGNDVCCDCGAPDP-------------------TWLSTNLGILTCIECSG 43 (122)
T ss_dssp HHSTTTTBCTTTCCBSC-------------------CEEETTTTEEECHHHHH
T ss_pred HhCCCCCccCCCCCCCC-------------------CeEEecCCEEEchhhhH
Confidence 34455567999985421 13455699999999954
No 7
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=44.74 E-value=4.1 Score=26.95 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=9.5
Q ss_pred ccCCcchHHHHH
Q 033398 77 AYGGVLSGGAVR 88 (120)
Q Consensus 77 aYGG~lC~kcVr 88 (120)
.-||.+|+.|-.
T Consensus 87 ~~Gg~~C~~c~~ 98 (157)
T d1u5ka2 87 LGGQLLCSKCAA 98 (157)
T ss_dssp TTSSEECTTTCS
T ss_pred cCCeeECCCCCC
Confidence 349999999943
No 8
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.29 E-value=6.2 Score=20.86 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 033398 39 ASGPKCPVTGKRIQ 52 (120)
Q Consensus 39 ~~~pkC~~cg~~L~ 52 (120)
++.+.|+-|+.++.
T Consensus 1 G~~~~CaGC~~~I~ 14 (30)
T d1j2oa1 1 GSLLTCGGCQQNIG 14 (30)
T ss_dssp CCCBCBSSSCSCBC
T ss_pred CCCcccCCCCCcch
Confidence 46678999998864
No 9
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.23 E-value=41 Score=19.71 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=9.9
Q ss_pred cchHHHHHHHHH
Q 033398 81 VLSGGAVRERII 92 (120)
Q Consensus 81 ~lC~kcVr~rIv 92 (120)
.+|.+|-||.+.
T Consensus 16 g~CSkCyr~~~~ 27 (56)
T d2c7na1 16 GFCSKCWREEYH 27 (56)
T ss_dssp TCCHHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 489999999763
No 10
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.45 E-value=9.6 Score=19.94 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.2
Q ss_pred CCCCCCCCCCccCCC
Q 033398 44 CPVTGKRIQGIPHLR 58 (120)
Q Consensus 44 C~~cg~~L~GI~~~R 58 (120)
|+.|.+||-|+--.+
T Consensus 1 C~~C~kPItg~gg~k 15 (29)
T d1x4la1 1 CAGCTNPISGLGGTK 15 (29)
T ss_dssp BTTTTBCCCCSSSCS
T ss_pred CCccCCcccccCCce
Confidence 889999999987543
No 11
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.12 E-value=16 Score=21.08 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~ 89 (120)
..+.|..|+.++.=+. .|+--|.=|.++|+.|...
T Consensus 7 ~~~~C~~C~~~F~~~~---------------rrHHCR~CG~v~C~~Cs~~ 41 (64)
T d1joca1 7 EVQNCMACGKGFSVTV---------------RRHHCRQCGNIFCAECSAK 41 (64)
T ss_dssp GCCBCTTTCCBCCSSS---------------CCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCcCCcccCCc---------------cccchhhhCCeecccccCC
Confidence 4566999988774321 2678899999999999754
No 12
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.65 E-value=17 Score=20.37 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398 42 PKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR 88 (120)
Q Consensus 42 pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr 88 (120)
|-|-.|+.+..-+. .|+--|.=|+++|.+|..
T Consensus 1 p~C~~C~~~F~~~~---------------rkhhCr~CG~~fC~~Cs~ 32 (51)
T d1y02a2 1 PSCKSCGAHFANTA---------------RKQTCLDCKKNFCMTCSS 32 (51)
T ss_dssp CCCTTTCCCCSSGG---------------GCEECTTTCCEECGGGEE
T ss_pred CCccccCCcccCCc---------------cCcccccCCcccCccccC
Confidence 56888887764211 268889999999999964
No 13
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.77 E-value=22 Score=23.55 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033398 90 RIIRAFLVEEQKIVKK 105 (120)
Q Consensus 90 rIvrAFL~EEqkivk~ 105 (120)
+||+-.|.||.+||..
T Consensus 104 ~iI~~cL~~E~riv~~ 119 (124)
T d1bgfa_ 104 VVISNCLREERRILAA 119 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6999999999999953
No 14
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.89 E-value=20 Score=22.41 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.3
Q ss_pred EEEeeecCCCCCCCCCCCC
Q 033398 31 VYQSTKKRASGPKCPVTGK 49 (120)
Q Consensus 31 v~~y~KK~~~~pkC~~cg~ 49 (120)
|+.|.|-.+..|.|+.|.+
T Consensus 17 VvvF~Kgt~~~p~Cp~c~~ 35 (109)
T d1wika_ 17 VMLFMKGNKQEAKCGFSKQ 35 (109)
T ss_dssp EEEEESSTTTCCCSSTHHH
T ss_pred EEEEeCCCCCCCCChHHHH
Confidence 6679999999999999984
No 15
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.68 E-value=19 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccCCC
Q 033398 44 CPVTGKRIQGIPHLR 58 (120)
Q Consensus 44 C~~cg~~L~GI~~~R 58 (120)
|..|.+||-|+--.+
T Consensus 1 C~~C~kPItg~gG~k 15 (29)
T d1x68a1 1 CVACSKPISGLTGAK 15 (29)
T ss_dssp CTTTCCCCCTTTTCC
T ss_pred CccccccccccCCce
Confidence 788999999986543
No 16
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.66 E-value=36 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=23.9
Q ss_pred eeEEeecCC-CceEEEeeecCCCCCCCCCCCCCC
Q 033398 19 QHRVVKTPG-GKLVYQSTKKRASGPKCPVTGKRI 51 (120)
Q Consensus 19 k~~~vrTPG-Grlv~~y~KK~~~~pkC~~cg~~L 51 (120)
+...|+=|| |...+.| -.-.+...|..||..|
T Consensus 4 ~F~~VkC~~C~n~~ivF-sha~t~V~C~~Cg~~L 36 (58)
T d1qxfa_ 4 RFVKVKCPDCEHEQVIF-DHPSTIVKCIICGRTV 36 (58)
T ss_dssp CEEEEECTTTCCEEEEE-SSCSSCEECSSSCCEE
T ss_pred eeEEeECCCCCCeEEEE-ecCceEEEccccCCEE
Confidence 456788888 8888888 4456666699999765
No 17
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.04 E-value=17 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 033398 39 ASGPKCPVTGKRIQ 52 (120)
Q Consensus 39 ~~~pkC~~cg~~L~ 52 (120)
.+.-+|+.||.+|-
T Consensus 6 ~tlEkC~~C~~~I~ 19 (35)
T d2dloa1 6 ATLEKCATCSQPIL 19 (35)
T ss_dssp SSCCBCTTTCCBCC
T ss_pred HHHHHHHHhchHHH
Confidence 45678999998753
No 18
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=21.00 E-value=13 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 033398 43 KCPVTGKRIQG 53 (120)
Q Consensus 43 kC~~cg~~L~G 53 (120)
+|+.||+-|..
T Consensus 2 rca~cgk~les 12 (31)
T d1ibia2 2 RCAKCGKSLES 12 (31)
T ss_dssp ECSSSCCEECS
T ss_pred ccccccCcccc
Confidence 58999988765
No 19
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.19 E-value=20 Score=18.71 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q 033398 41 GPKCPVTGKRIQ 52 (120)
Q Consensus 41 ~pkC~~cg~~L~ 52 (120)
...|+.||.+|.
T Consensus 2 ~~~CaGC~~~I~ 13 (30)
T d1rutx1 2 WKRCAGCGGKIA 13 (30)
T ss_dssp CCBBTTTCCBCC
T ss_pred ccccCCCCCccc
Confidence 346999998864
No 20
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.11 E-value=22 Score=21.92 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHHHH
Q 033398 39 ASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERI 91 (120)
Q Consensus 39 ~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~rI 91 (120)
+...+|-.|+.++.-+. .++--|.=|.++|+.|...++
T Consensus 7 ~~~s~C~~C~~~Fs~~~---------------rrhhCr~CG~vfC~~Cs~~~~ 44 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFK---------------KEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCCSBCTTTCCBCCSSS---------------CEEECSSSCCEEETTTSCEEE
T ss_pred cccCcCcccCchhcccc---------------ccccccccChhhChHHhCCcc
Confidence 45567888988874221 256778888888888875443
Done!