BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033399
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7PNM6|ATAT_ANOGA Alpha-tubulin N-acetyltransferase OS=Anopheles gambiae
           GN=AGAP005828 PE=3 SV=4
          Length = 483

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 29/99 (29%)

Query: 22  GLEIN-----EARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEH---------GG 67
           GLE+      E  P+D +P  G               P+PDP    P H         GG
Sbjct: 320 GLEVKFADQPETLPYDDMPEPG---------------PDPDPYDFHPHHLELHDDTEGGG 364

Query: 68  RDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTR 106
             R   ++ + VS+    +  AG  Y +  S +PA +T+
Sbjct: 365 SHRDQSLSPQSVSQQASPVHPAGSDYGVLGSRKPARYTK 403


>sp|P45871|YWKD_BACSU Uncharacterized protein YwkD OS=Bacillus subtilis (strain 168)
           GN=ywkD PE=4 SV=1
          Length = 128

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 21  LGLE-INEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 79
           LG + I E    ++  Y+      G+ +I L   P+P     RPE  G  RH    +  +
Sbjct: 27  LGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPERQTRPEAAGL-RHLAFTVGSL 85

Query: 80  SKLKMILDKAGISY----TLSKSGRPAIFTRDPDANALE 114
            K    L + GI      T   +G+   F  DPD   LE
Sbjct: 86  DKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLE 124


>sp|A4JF88|DAPE_BURVG Succinyl-diaminopimelate desuccinylase OS=Burkholderia
           vietnamiensis (strain G4 / LMG 22486) GN=dapE PE=3 SV=1
          Length = 379

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 80  SKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALE 114
           +++  ILDK G+ YTL  S SG P +  R   +NALE
Sbjct: 273 ARVHAILDKHGLDYTLKWSVSGLPFLTPRGELSNALE 309


>sp|B1YSH9|DAPE_BURA4 Succinyl-diaminopimelate desuccinylase OS=Burkholderia ambifaria
           (strain MC40-6) GN=dapE PE=3 SV=1
          Length = 379

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 80  SKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALE 114
           +++  ILDK G+ YTL  S SG P +  R   +NALE
Sbjct: 273 ARVHAILDKHGLEYTLKWSVSGLPFLTPRGDLSNALE 309


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,746,317
Number of Sequences: 539616
Number of extensions: 2057037
Number of successful extensions: 3721
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3721
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)