Query 033399
Match_columns 120
No_of_seqs 166 out of 1194
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 99.8 3.7E-19 8.1E-24 121.5 13.7 114 5-119 81-223 (233)
2 PRK10291 glyoxalase I; Provisi 99.8 3.5E-19 7.5E-24 112.1 11.4 109 6-118 3-120 (129)
3 PRK11478 putative lyase; Provi 99.8 1.6E-18 3.4E-23 108.6 13.6 111 6-117 13-128 (129)
4 cd08342 HPPD_N_like N-terminal 99.8 6.4E-19 1.4E-23 112.0 11.3 112 7-120 8-125 (136)
5 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 2.9E-18 6.4E-23 109.2 13.9 113 5-118 9-141 (142)
6 PLN03042 Lactoylglutathione ly 99.8 4.4E-18 9.5E-23 113.5 13.5 114 6-119 34-175 (185)
7 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.7E-18 5.8E-23 106.6 11.4 110 6-116 8-125 (125)
8 cd08355 Glo_EDI_BRP_like_14 Th 99.8 9.4E-18 2E-22 104.3 13.7 112 7-118 7-122 (122)
9 TIGR03645 glyox_marine lactoyl 99.8 9.6E-18 2.1E-22 109.7 12.7 114 6-119 11-152 (162)
10 cd09011 Glo_EDI_BRP_like_23 Th 99.8 5.9E-18 1.3E-22 105.1 11.0 106 7-119 10-120 (120)
11 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 1.8E-17 3.9E-22 100.6 11.7 104 6-115 7-114 (114)
12 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 4.5E-17 9.7E-22 100.7 13.3 108 8-117 10-121 (122)
13 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 3.9E-17 8.3E-22 101.1 13.0 110 7-117 11-125 (125)
14 TIGR03081 metmalonyl_epim meth 99.8 1.1E-17 2.3E-22 104.4 10.1 112 6-117 8-128 (128)
15 cd07233 Glyoxalase_I Glyoxalas 99.8 5.9E-17 1.3E-21 100.1 13.2 109 5-116 6-121 (121)
16 cd08347 PcpA_C_like C-terminal 99.7 7.8E-17 1.7E-21 105.0 12.1 106 5-118 7-120 (157)
17 cd08359 Glo_EDI_BRP_like_22 Th 99.7 1.4E-16 3.1E-21 98.4 12.5 104 7-117 9-119 (119)
18 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.3E-16 5E-21 96.7 13.3 108 5-117 4-119 (119)
19 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 2.5E-16 5.4E-21 97.4 13.3 108 6-118 10-125 (125)
20 cd08363 FosB FosB, a fosfomyci 99.7 7.9E-17 1.7E-21 101.9 11.1 102 7-118 8-115 (131)
21 cd08350 BLMT_like BLMT, a bleo 99.7 1.4E-16 3E-21 99.0 12.0 99 7-118 10-119 (120)
22 cd08356 Glo_EDI_BRP_like_17 Th 99.7 1.4E-16 3E-21 98.3 11.7 96 7-117 9-113 (113)
23 cd07243 2_3_CTD_C C-terminal d 99.7 1.5E-16 3.2E-21 102.2 12.2 104 5-117 12-124 (143)
24 cd08349 BLMA_like Bleomycin bi 99.7 3.4E-16 7.4E-21 95.4 12.4 103 6-117 5-112 (112)
25 PRK04101 fosfomycin resistance 99.7 2.6E-16 5.6E-21 100.3 12.2 103 6-118 11-119 (139)
26 TIGR00068 glyox_I lactoylgluta 99.7 1.9E-16 4.1E-21 102.2 11.4 109 6-118 24-141 (150)
27 cd08364 FosX FosX, a fosfomyci 99.7 2.8E-16 6.1E-21 99.3 11.6 104 6-118 11-122 (131)
28 cd07247 SgaA_N_like N-terminal 99.7 7.8E-16 1.7E-20 94.4 12.9 103 6-117 7-114 (114)
29 cd07264 Glo_EDI_BRP_like_15 Th 99.7 7.4E-16 1.6E-20 95.8 12.4 109 6-118 7-125 (125)
30 PF12681 Glyoxalase_2: Glyoxal 99.7 2.5E-16 5.4E-21 95.6 9.4 97 8-116 4-108 (108)
31 cd07252 BphC1-RGP6_N_like N-te 99.7 1.2E-15 2.7E-20 94.8 12.4 97 6-118 9-117 (120)
32 cd08345 Fosfomycin_RP Fosfomyc 99.7 6.2E-16 1.3E-20 94.6 10.9 101 6-118 5-111 (113)
33 PLN02300 lactoylglutathione ly 99.7 6.6E-16 1.4E-20 109.2 12.1 111 5-119 30-149 (286)
34 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 1.9E-15 4.1E-20 92.6 12.5 97 7-118 8-111 (112)
35 cd07257 THT_oxygenase_C The C- 99.7 3.8E-16 8.3E-21 101.2 9.7 107 6-118 8-125 (153)
36 cd07244 FosA FosA, a Fosfomyci 99.7 9.5E-16 2.1E-20 95.4 11.0 100 6-118 8-110 (121)
37 cd08360 MhqB_like_C C-terminal 99.7 1.5E-15 3.4E-20 96.1 11.9 98 6-117 10-119 (134)
38 cd07265 2_3_CTD_N N-terminal d 99.7 1.7E-15 3.6E-20 94.2 11.7 98 6-119 11-120 (122)
39 cd08346 PcpA_N_like N-terminal 99.7 1.4E-15 3.1E-20 94.2 11.2 109 6-116 8-126 (126)
40 cd07254 Glo_EDI_BRP_like_20 Th 99.7 3.4E-15 7.4E-20 92.5 12.9 103 6-120 8-119 (120)
41 cd07249 MMCE Methylmalonyl-CoA 99.7 1.3E-15 2.8E-20 94.8 10.9 111 7-117 8-128 (128)
42 cd08351 ChaP_like ChaP, an enz 99.7 3E-15 6.5E-20 93.3 12.5 99 5-119 10-122 (123)
43 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 3.1E-15 6.8E-20 93.4 12.6 108 5-118 7-128 (128)
44 cd07267 THT_Oxygenase_N N-term 99.7 3E-15 6.6E-20 92.1 11.6 97 6-117 10-109 (113)
45 cd08354 Glo_EDI_BRP_like_13 Th 99.7 6.3E-15 1.4E-19 91.1 12.8 107 6-117 7-121 (122)
46 cd08361 PpCmtC_N N-terminal do 99.7 6.2E-15 1.3E-19 92.2 12.4 96 6-119 13-120 (124)
47 cd07255 Glo_EDI_BRP_like_12 Th 99.7 9.1E-15 2E-19 90.9 13.0 104 6-118 9-119 (125)
48 cd08343 ED_TypeI_classII_C C-t 99.6 7.4E-15 1.6E-19 92.5 12.4 102 6-118 6-117 (131)
49 cd07261 Glo_EDI_BRP_like_11 Th 99.6 9.2E-15 2E-19 89.7 12.4 102 6-117 5-114 (114)
50 cd09012 Glo_EDI_BRP_like_24 Th 99.6 3.7E-15 8.1E-20 92.9 10.6 107 6-117 7-123 (124)
51 cd07237 BphC1-RGP6_C_like C-te 99.6 5.9E-15 1.3E-19 95.7 11.7 103 6-118 16-131 (154)
52 cd09014 BphC-JF8_C_like C-term 99.6 6.7E-15 1.4E-19 96.6 12.0 104 7-118 14-127 (166)
53 cd08358 Glo_EDI_BRP_like_21 Th 99.6 1.4E-14 3E-19 91.3 13.0 103 5-117 8-126 (127)
54 cd06587 Glo_EDI_BRP_like This 99.6 9.4E-15 2E-19 87.7 11.5 104 6-115 5-112 (112)
55 cd07258 PpCmtC_C C-terminal do 99.6 1.1E-14 2.3E-19 93.4 12.2 101 5-118 5-114 (141)
56 cd08348 BphC2-C3-RGP6_C_like T 99.6 1.8E-14 4E-19 90.8 13.1 106 5-118 7-120 (134)
57 cd07239 BphC5-RK37_C_like C-te 99.6 1E-14 2.2E-19 93.8 11.8 97 7-119 12-118 (144)
58 cd08362 BphC5-RrK37_N_like N-t 99.6 1E-14 2.2E-19 90.1 11.3 99 6-118 10-117 (120)
59 KOG2944 Glyoxalase [Carbohydra 99.6 1.1E-14 2.4E-19 93.0 11.6 102 15-118 58-168 (170)
60 cd08357 Glo_EDI_BRP_like_18 Th 99.6 8.1E-15 1.8E-19 91.0 10.8 106 6-117 6-124 (125)
61 cd07256 HPCD_C_class_II C-term 99.6 1.3E-14 2.8E-19 94.8 11.7 101 6-117 10-122 (161)
62 cd07240 ED_TypeI_classII_N N-t 99.6 2.2E-14 4.9E-19 88.0 12.1 99 5-118 8-114 (117)
63 cd07235 MRD Mitomycin C resist 99.6 1.9E-14 4.1E-19 89.3 11.8 104 8-116 9-121 (122)
64 cd09013 BphC-JF8_N_like N-term 99.6 2E-14 4.4E-19 89.2 11.6 97 5-118 12-118 (121)
65 cd07251 Glo_EDI_BRP_like_10 Th 99.6 2.3E-14 4.9E-19 88.4 11.4 106 7-117 6-120 (121)
66 PF00903 Glyoxalase: Glyoxalas 99.6 1.1E-15 2.4E-20 94.7 4.6 111 5-115 7-128 (128)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.2E-13 2.6E-18 85.8 11.2 100 7-116 8-122 (123)
68 PRK06724 hypothetical protein; 99.6 1.7E-13 3.8E-18 86.4 11.6 98 6-119 14-124 (128)
69 TIGR03213 23dbph12diox 2,3-dih 99.6 1E-13 2.3E-18 97.8 11.6 96 6-117 10-117 (286)
70 TIGR03211 catechol_2_3 catecho 99.5 1.3E-13 2.8E-18 98.0 11.2 101 6-116 152-263 (303)
71 cd07266 HPCD_N_class_II N-term 99.5 3.3E-13 7.2E-18 83.5 10.9 96 6-118 11-118 (121)
72 COG2514 Predicted ring-cleavag 99.5 2.7E-13 5.8E-18 93.5 10.2 105 5-118 16-126 (265)
73 TIGR03213 23dbph12diox 2,3-dih 99.5 8.9E-13 1.9E-17 93.1 12.9 102 6-117 149-262 (286)
74 cd08344 MhqB_like_N N-terminal 99.5 6.2E-13 1.3E-17 81.6 10.6 93 6-117 9-108 (112)
75 PLN02300 lactoylglutathione ly 99.5 7.4E-13 1.6E-17 93.7 11.4 110 7-120 162-280 (286)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.5 1.9E-12 4.1E-17 91.6 12.1 96 6-118 11-115 (294)
77 TIGR02295 HpaD 3,4-dihydroxyph 99.4 1.7E-12 3.6E-17 91.8 11.0 102 6-118 143-256 (294)
78 TIGR03211 catechol_2_3 catecho 99.4 2E-12 4.3E-17 91.9 10.4 97 5-118 10-118 (303)
79 PF13669 Glyoxalase_4: Glyoxal 99.4 2.5E-12 5.3E-17 78.8 6.3 89 5-95 5-95 (109)
80 COG3565 Predicted dioxygenase 99.3 7.2E-11 1.6E-15 72.0 9.0 106 4-117 9-128 (138)
81 cd06588 PhnB_like Escherichia 99.3 3.8E-10 8.3E-15 70.9 12.0 106 5-116 6-128 (128)
82 COG2764 PhnB Uncharacterized p 99.0 6.7E-08 1.4E-12 61.4 12.7 109 7-118 9-131 (136)
83 COG3324 Predicted enzyme relat 99.0 5E-08 1.1E-12 61.2 11.8 105 7-119 17-126 (127)
84 cd07250 HPPD_C_like C-terminal 98.9 8.3E-09 1.8E-13 69.2 7.1 88 8-95 14-110 (191)
85 KOG2943 Predicted glyoxalase [ 98.8 1.5E-08 3.3E-13 69.2 6.8 107 3-117 21-142 (299)
86 TIGR01263 4HPPD 4-hydroxypheny 98.8 1.1E-07 2.5E-12 69.2 10.2 87 8-95 169-265 (353)
87 TIGR01263 4HPPD 4-hydroxypheny 98.7 1.3E-07 2.9E-12 68.9 10.1 88 7-96 10-100 (353)
88 COG0346 GloA Lactoylglutathion 98.6 1.1E-07 2.4E-12 58.1 5.1 49 69-117 85-138 (138)
89 COG3607 Predicted lactoylgluta 98.6 1.1E-06 2.3E-11 54.6 9.1 107 8-118 12-127 (133)
90 PF14506 CppA_N: CppA N-termin 98.5 1.2E-05 2.6E-10 49.7 11.2 106 4-118 5-114 (125)
91 PRK10148 hypothetical protein; 98.3 4.9E-05 1.1E-09 49.0 12.7 110 3-119 6-142 (147)
92 PLN02875 4-hydroxyphenylpyruva 98.2 1.4E-05 3.1E-10 59.1 8.3 87 9-95 190-293 (398)
93 PRK01037 trmD tRNA (guanine-N( 97.9 7.7E-05 1.7E-09 54.1 8.1 94 7-117 255-353 (357)
94 PF13669 Glyoxalase_4: Glyoxal 97.7 0.00015 3.2E-09 44.1 6.2 50 70-119 1-56 (109)
95 PF13468 Glyoxalase_3: Glyoxal 97.7 7.6E-05 1.6E-09 49.2 4.9 85 8-92 9-101 (175)
96 COG2514 Predicted ring-cleavag 97.6 0.00057 1.2E-08 47.8 7.4 89 6-116 175-264 (265)
97 KOG2943 Predicted glyoxalase [ 97.4 0.00034 7.3E-09 48.3 4.9 103 7-119 157-271 (299)
98 COG3185 4-hydroxyphenylpyruvat 97.4 0.00043 9.3E-09 50.1 5.5 86 10-95 180-272 (363)
99 PF14696 Glyoxalase_5: Hydroxy 97.3 0.0022 4.7E-08 41.1 7.6 103 12-118 21-126 (139)
100 PLN02875 4-hydroxyphenylpyruva 97.0 0.022 4.8E-07 42.5 10.9 114 5-118 6-151 (398)
101 KOG0638 4-hydroxyphenylpyruvat 96.6 0.0048 1E-07 44.4 4.7 88 9-96 27-119 (381)
102 cd08353 Glo_EDI_BRP_like_7 Thi 96.4 0.023 5E-07 35.6 6.9 51 68-118 3-69 (142)
103 TIGR03645 glyox_marine lactoyl 95.7 0.085 1.9E-06 34.2 7.0 52 68-119 4-78 (162)
104 cd08352 Glo_EDI_BRP_like_1 Thi 95.2 0.24 5.2E-06 29.7 7.5 50 68-117 3-57 (125)
105 PF06983 3-dmu-9_3-mt: 3-demet 95.2 0.41 8.8E-06 29.5 11.0 101 3-116 6-116 (116)
106 PF13670 PepSY_2: Peptidase pr 95.1 0.12 2.6E-06 29.9 5.5 40 78-117 30-72 (83)
107 cd08347 PcpA_C_like C-terminal 94.9 0.21 4.6E-06 32.3 6.9 50 69-118 2-53 (157)
108 PF13468 Glyoxalase_3: Glyoxal 94.9 0.056 1.2E-06 35.5 4.2 47 69-118 1-54 (175)
109 cd07245 Glo_EDI_BRP_like_9 Thi 94.6 0.2 4.4E-06 29.2 5.9 50 69-118 1-52 (114)
110 cd07241 Glo_EDI_BRP_like_3 Thi 94.4 0.43 9.3E-06 28.6 7.2 50 69-118 2-56 (125)
111 cd08346 PcpA_N_like N-terminal 94.3 0.45 9.7E-06 28.5 7.1 50 69-118 2-60 (126)
112 cd07242 Glo_EDI_BRP_like_6 Thi 94.2 0.38 8.3E-06 29.2 6.7 49 69-118 2-54 (128)
113 KOG0638 4-hydroxyphenylpyruvat 94.2 0.054 1.2E-06 39.2 3.0 85 10-95 191-289 (381)
114 cd06587 Glo_EDI_BRP_like This 94.0 0.34 7.3E-06 27.9 6.0 48 71-119 1-51 (112)
115 cd07263 Glo_EDI_BRP_like_16 Th 93.7 0.5 1.1E-05 27.9 6.4 47 71-117 1-53 (119)
116 cd07249 MMCE Methylmalonyl-CoA 93.6 0.5 1.1E-05 28.4 6.4 49 69-118 1-55 (128)
117 cd07250 HPPD_C_like C-terminal 93.6 0.4 8.7E-06 32.1 6.3 51 68-118 3-63 (191)
118 cd08348 BphC2-C3-RGP6_C_like T 93.5 0.85 1.8E-05 28.0 7.4 50 69-118 2-54 (134)
119 cd07235 MRD Mitomycin C resist 93.4 0.51 1.1E-05 28.4 6.1 46 70-115 2-47 (122)
120 cd07233 Glyoxalase_I Glyoxalas 93.1 0.62 1.3E-05 27.8 6.2 48 70-117 2-57 (121)
121 cd07255 Glo_EDI_BRP_like_12 Th 93.0 1 2.2E-05 27.1 7.1 48 69-118 3-52 (125)
122 cd08342 HPPD_N_like N-terminal 92.6 1.1 2.4E-05 27.8 7.0 48 69-117 1-51 (136)
123 PLN03042 Lactoylglutathione ly 91.9 2.5 5.4E-05 28.3 8.3 28 68-95 27-55 (185)
124 cd08344 MhqB_like_N N-terminal 91.4 1.5 3.3E-05 26.0 6.4 29 68-96 2-30 (112)
125 PF15067 FAM124: FAM124 family 91.4 0.61 1.3E-05 32.4 4.9 92 10-115 141-235 (236)
126 PRK11478 putative lyase; Provi 91.3 1.6 3.5E-05 26.4 6.6 50 68-117 6-60 (129)
127 cd07253 Glo_EDI_BRP_like_2 Thi 91.0 1.7 3.7E-05 25.8 6.4 29 68-96 3-32 (125)
128 TIGR03081 metmalonyl_epim meth 90.7 1.9 4.2E-05 25.9 6.5 49 69-118 2-55 (128)
129 cd07252 BphC1-RGP6_N_like N-te 90.3 2.6 5.7E-05 25.4 6.8 47 69-116 3-51 (120)
130 cd08360 MhqB_like_C C-terminal 90.2 2.7 5.8E-05 26.0 6.8 49 68-117 3-55 (134)
131 cd07262 Glo_EDI_BRP_like_19 Th 89.8 2.6 5.6E-05 25.3 6.5 47 70-117 2-53 (123)
132 COG3185 4-hydroxyphenylpyruvat 89.6 3.8 8.3E-05 30.3 7.9 93 12-110 35-142 (363)
133 cd07240 ED_TypeI_classII_N N-t 88.8 3.3 7.2E-05 24.4 6.4 47 69-117 3-52 (117)
134 PLN02367 lactoylglutathione ly 87.5 4.9 0.00011 28.0 7.1 28 68-95 75-103 (233)
135 PF00903 Glyoxalase: Glyoxalas 87.5 2.5 5.4E-05 25.1 5.3 27 69-95 2-29 (128)
136 cd04895 ACT_ACR_1 ACT domain-c 87.4 3.5 7.6E-05 23.3 5.4 36 79-114 15-56 (72)
137 cd03012 TlpA_like_DipZ_like Tl 87.2 3.9 8.5E-05 25.0 6.1 52 69-120 57-126 (126)
138 cd08358 Glo_EDI_BRP_like_21 Th 85.4 6.9 0.00015 24.5 7.2 27 69-95 3-30 (127)
139 cd04882 ACT_Bt0572_2 C-termina 84.9 2.6 5.6E-05 22.3 4.0 25 69-93 40-64 (65)
140 cd07239 BphC5-RK37_C_like C-te 84.7 7.7 0.00017 24.5 6.7 28 68-95 4-32 (144)
141 cd07237 BphC1-RGP6_C_like C-te 84.5 8.2 0.00018 24.6 7.7 50 68-117 9-67 (154)
142 cd08363 FosB FosB, a fosfomyci 84.3 7.4 0.00016 23.9 6.5 27 69-95 1-28 (131)
143 cd07257 THT_oxygenase_C The C- 83.8 6.5 0.00014 25.0 6.0 27 69-95 2-29 (153)
144 cd09012 Glo_EDI_BRP_like_24 Th 83.7 7.3 0.00016 23.4 6.4 26 70-95 2-27 (124)
145 cd07247 SgaA_N_like N-terminal 83.7 6.8 0.00015 23.0 6.6 27 70-96 2-29 (114)
146 cd08343 ED_TypeI_classII_C C-t 83.0 8.3 0.00018 23.5 6.2 48 70-117 1-53 (131)
147 cd07265 2_3_CTD_N N-terminal d 82.8 8 0.00017 23.1 6.5 29 68-96 4-33 (122)
148 cd09013 BphC-JF8_N_like N-term 82.0 8.6 0.00019 23.0 7.0 47 68-116 6-56 (121)
149 cd08351 ChaP_like ChaP, an enz 81.6 9.1 0.0002 23.0 6.4 48 68-117 4-52 (123)
150 cd08361 PpCmtC_N N-terminal do 81.6 9.4 0.0002 23.1 6.2 47 68-116 6-54 (124)
151 cd08364 FosX FosX, a fosfomyci 80.9 10 0.00023 23.2 6.6 28 68-95 4-32 (131)
152 PRK04101 fosfomycin resistance 80.8 11 0.00024 23.4 6.7 28 68-95 4-32 (139)
153 COG1225 Bcp Peroxiredoxin [Pos 80.7 12 0.00025 24.6 6.3 48 69-116 65-136 (157)
154 PRK09437 bcp thioredoxin-depen 80.7 8.9 0.00019 24.2 5.8 49 69-117 65-137 (154)
155 PRK10382 alkyl hydroperoxide r 78.8 17 0.00036 24.4 6.8 49 69-117 66-136 (187)
156 cd07266 HPCD_N_class_II N-term 78.8 11 0.00024 22.3 6.2 29 68-96 4-33 (121)
157 cd07256 HPCD_C_class_II C-term 77.7 16 0.00034 23.4 6.8 28 68-95 3-31 (161)
158 PF14133 DUF4300: Domain of un 77.2 4.6 9.9E-05 28.5 3.8 36 79-114 150-185 (250)
159 cd03017 PRX_BCP Peroxiredoxin 77.1 14 0.00031 22.6 5.9 48 69-116 58-126 (140)
160 COG0346 GloA Lactoylglutathion 76.9 5 0.00011 23.5 3.6 27 69-95 3-30 (138)
161 cd04906 ACT_ThrD-I_1 First of 76.2 6.2 0.00013 22.7 3.7 26 70-95 42-71 (85)
162 cd07267 THT_Oxygenase_N N-term 75.7 14 0.0003 21.8 6.5 28 69-96 4-31 (113)
163 PF05593 RHS_repeat: RHS Repea 75.0 7.9 0.00017 18.6 3.4 24 97-120 13-36 (38)
164 PF00578 AhpC-TSA: AhpC/TSA fa 74.8 6.7 0.00015 23.5 3.8 46 68-113 59-122 (124)
165 TIGR01643 YD_repeat_2x YD repe 74.2 8.4 0.00018 18.7 3.5 24 97-120 13-36 (42)
166 PRK06724 hypothetical protein; 73.5 19 0.00041 22.3 6.1 27 68-94 7-37 (128)
167 cd07243 2_3_CTD_C C-terminal d 72.6 8.5 0.00018 24.2 4.0 28 68-95 6-34 (143)
168 cd04897 ACT_ACR_3 ACT domain-c 72.4 15 0.00033 20.8 4.9 36 79-114 15-56 (75)
169 cd09014 BphC-JF8_C_like C-term 71.4 8.8 0.00019 24.8 4.0 28 68-95 6-34 (166)
170 cd04883 ACT_AcuB C-terminal AC 71.2 12 0.00026 20.2 4.0 27 69-95 42-70 (72)
171 cd07251 Glo_EDI_BRP_like_10 Th 71.0 19 0.0004 21.1 5.8 44 72-117 2-46 (121)
172 cd04908 ACT_Bt0572_1 N-termina 70.6 12 0.00026 20.1 3.9 25 70-94 41-65 (66)
173 PF07063 DUF1338: Domain of un 70.5 5.8 0.00013 28.8 3.1 27 68-94 184-216 (302)
174 PRK06704 RNA polymerase factor 69.3 4 8.8E-05 28.2 2.1 43 72-116 182-226 (228)
175 COG4747 ACT domain-containing 68.3 6.4 0.00014 24.7 2.5 26 70-95 110-135 (142)
176 TIGR00068 glyox_I lactoylgluta 64.0 22 0.00049 22.2 4.7 29 67-95 16-45 (150)
177 COG3349 Uncharacterized conser 63.9 16 0.00034 28.4 4.4 34 82-115 15-52 (485)
178 cd04885 ACT_ThrD-I Tandem C-te 63.8 16 0.00034 19.9 3.4 26 69-94 39-67 (68)
179 cd07268 Glo_EDI_BRP_like_4 Thi 63.7 38 0.00082 22.0 5.9 28 69-96 2-32 (149)
180 PF06923 GutM: Glucitol operon 60.0 37 0.00081 20.7 5.5 45 76-120 23-72 (109)
181 PHA00450 host dGTPase inhibito 59.3 25 0.00053 20.4 3.6 39 78-116 11-56 (85)
182 PRK11700 hypothetical protein; 58.9 54 0.0012 22.2 6.0 28 69-96 40-70 (187)
183 PRK10234 DNA-binding transcrip 58.5 21 0.00045 22.3 3.6 45 76-120 24-73 (118)
184 cd02969 PRX_like1 Peroxiredoxi 58.0 47 0.001 21.3 5.5 47 69-115 59-125 (171)
185 PF10706 Aminoglyc_resit: Amin 58.0 34 0.00074 22.7 4.6 42 71-115 46-87 (174)
186 PF09142 TruB_C: tRNA Pseudour 57.6 27 0.00058 18.6 3.5 41 78-120 5-46 (56)
187 PRK13599 putative peroxiredoxi 57.2 54 0.0012 22.4 5.8 49 69-117 63-136 (215)
188 cd04886 ACT_ThrD-II-like C-ter 55.7 29 0.00064 18.2 4.0 25 70-94 45-72 (73)
189 PF07494 Reg_prop: Two compone 55.7 16 0.00034 15.7 2.0 12 102-113 8-19 (24)
190 cd02966 TlpA_like_family TlpA- 55.1 38 0.00082 19.2 6.6 48 69-116 53-114 (116)
191 cd04909 ACT_PDH-BS C-terminal 54.4 15 0.00033 19.7 2.3 23 71-93 44-69 (69)
192 cd03008 TryX_like_RdCVF Trypar 54.0 57 0.0012 21.0 6.2 46 69-114 66-127 (146)
193 PF13905 Thioredoxin_8: Thiore 53.7 40 0.00086 19.1 4.9 45 68-112 35-95 (95)
194 cd03063 TRX_Fd_FDH_beta TRX-li 51.6 49 0.0011 19.6 4.3 32 79-110 20-58 (92)
195 COG3603 Uncharacterized conser 51.6 19 0.00041 22.6 2.5 25 70-94 103-127 (128)
196 PRK13495 chemoreceptor glutami 51.3 41 0.00089 22.1 4.3 34 78-111 106-142 (159)
197 PHA00446 hypothetical protein 50.8 5.5 0.00012 23.0 0.1 13 1-13 32-44 (89)
198 PF06185 YecM: YecM protein; 50.7 26 0.00057 23.6 3.3 27 69-95 35-64 (185)
199 PF10922 DUF2745: Protein of u 50.7 39 0.00085 19.7 3.6 36 78-113 11-53 (85)
200 PRK13498 chemoreceptor glutami 50.6 42 0.00091 22.2 4.3 36 78-114 116-154 (167)
201 PF03271 EB1: EB1-like C-termi 50.5 6.2 0.00013 19.9 0.3 11 11-21 3-13 (43)
202 cd08354 Glo_EDI_BRP_like_13 Th 50.5 50 0.0011 19.3 7.2 46 70-116 2-48 (122)
203 PRK13490 chemoreceptor glutami 50.4 42 0.0009 22.1 4.2 37 78-115 113-152 (162)
204 PF00379 Chitin_bind_4: Insect 50.2 28 0.00061 17.9 2.8 16 101-116 29-44 (52)
205 COG4009 Uncharacterized protei 50.1 29 0.00062 20.1 3.0 27 69-95 50-78 (88)
206 PF03975 CheD: CheD chemotacti 49.9 46 0.001 20.3 4.2 38 77-115 64-104 (114)
207 PTZ00056 glutathione peroxidas 47.2 86 0.0019 21.0 6.4 49 69-117 73-162 (199)
208 PRK13497 chemoreceptor glutami 47.1 52 0.0011 22.2 4.3 35 78-112 113-150 (184)
209 KOG2465 Uncharacterized conser 46.2 19 0.00042 26.3 2.3 19 68-86 168-186 (390)
210 PF00585 Thr_dehydrat_C: C-ter 45.4 27 0.00058 20.5 2.5 27 69-95 51-80 (91)
211 PRK13494 chemoreceptor glutami 45.3 70 0.0015 21.1 4.7 37 78-115 115-154 (163)
212 PRK15412 thiol:disulfide inter 44.7 89 0.0019 20.5 6.4 48 69-116 98-159 (185)
213 PF03432 Relaxase: Relaxase/Mo 44.5 59 0.0013 22.1 4.5 36 75-110 183-218 (242)
214 PRK13493 chemoreceptor glutami 43.9 58 0.0013 22.5 4.3 37 78-115 140-179 (213)
215 PF12142 PPO1_DWL: Polyphenol 43.7 33 0.00071 18.3 2.4 17 101-117 10-26 (54)
216 PRK03467 hypothetical protein; 43.6 88 0.0019 20.2 4.8 42 77-118 5-51 (144)
217 TIGR02661 MauD methylamine deh 43.6 95 0.0021 20.5 5.3 45 70-114 106-161 (189)
218 PF10649 DUF2478: Protein of u 43.6 93 0.002 20.4 5.5 42 79-120 16-66 (159)
219 cd03016 PRX_1cys Peroxiredoxin 43.4 99 0.0022 20.7 6.5 48 69-116 60-133 (203)
220 PRK13488 chemoreceptor glutami 43.4 63 0.0014 21.1 4.2 38 77-115 107-147 (157)
221 COG1871 CheD Chemotaxis protei 42.8 78 0.0017 20.9 4.5 36 77-112 114-152 (164)
222 PF12687 DUF3801: Protein of u 42.8 80 0.0017 21.5 4.8 42 68-109 33-79 (204)
223 PRK13491 chemoreceptor glutami 42.6 65 0.0014 22.0 4.3 35 78-112 116-153 (199)
224 COG4081 Uncharacterized protei 40.8 34 0.00073 21.9 2.5 32 81-112 23-56 (148)
225 PF14527 LAGLIDADG_WhiA: WhiA 40.6 64 0.0014 19.0 3.6 40 70-109 22-65 (93)
226 PF14044 NETI: NETI protein 40.5 49 0.0011 17.8 2.8 22 74-95 2-26 (57)
227 cd02971 PRX_family Peroxiredox 39.3 88 0.0019 18.9 5.9 50 68-117 56-127 (140)
228 PF05301 Mec-17: Touch recepto 39.0 37 0.00079 21.3 2.5 21 97-117 25-45 (120)
229 PRK14707 hypothetical protein; 38.7 58 0.0013 30.4 4.3 38 79-116 2358-2404(2710)
230 PF09259 Fve: Fungal immunomod 37.9 60 0.0013 19.3 3.1 13 99-111 89-102 (111)
231 PF11823 DUF3343: Protein of u 37.9 54 0.0012 18.1 2.9 26 70-95 41-68 (73)
232 PF13756 Stimulus_sens_1: Stim 37.6 29 0.00062 21.2 1.9 14 101-114 19-32 (112)
233 cd03014 PRX_Atyp2cys Peroxired 37.6 98 0.0021 19.0 6.2 49 68-116 58-126 (143)
234 cd07890 CYTH-like_AC_IV-like A 37.4 57 0.0012 21.1 3.4 19 73-91 5-23 (169)
235 TIGR00318 cyaB adenylyl cyclas 37.1 1.2E+02 0.0026 19.8 5.5 24 71-94 79-102 (174)
236 PRK13487 chemoreceptor glutami 36.7 1.1E+02 0.0024 20.9 4.7 38 77-115 127-167 (201)
237 COG4874 Uncharacterized protei 36.4 34 0.00073 24.4 2.2 45 70-118 210-260 (318)
238 PRK13489 chemoreceptor glutami 35.9 92 0.002 21.9 4.3 37 78-115 126-165 (233)
239 cd04926 ACT_ACR_4 C-terminal 35.0 80 0.0017 17.2 5.5 41 72-112 4-54 (72)
240 PF07166 DUF1398: Protein of u 34.9 1.2E+02 0.0025 19.1 4.3 37 78-114 85-121 (125)
241 PF11633 SUD-M: Single-strande 34.4 1.1E+02 0.0023 19.7 4.0 37 70-106 36-74 (142)
242 cd02968 SCO SCO (an acronym fo 34.4 1.1E+02 0.0024 18.6 6.5 16 101-116 125-140 (142)
243 PRK00522 tpx lipid hydroperoxi 33.8 1.3E+02 0.0029 19.3 6.2 49 68-116 76-147 (167)
244 PF14907 NTP_transf_5: Unchara 33.6 1.5E+02 0.0033 20.1 6.2 45 72-117 97-143 (249)
245 PF03698 UPF0180: Uncharacteri 33.4 1E+02 0.0022 17.8 5.1 39 75-113 5-49 (80)
246 PF09741 DUF2045: Uncharacteri 33.0 22 0.00048 24.9 0.9 19 68-86 132-150 (237)
247 PRK15000 peroxidase; Provision 32.9 90 0.0019 21.0 3.9 19 99-117 124-142 (200)
248 TIGR02540 gpx7 putative glutat 32.5 57 0.0012 20.6 2.7 49 69-117 56-137 (153)
249 PF08285 DPM3: Dolichol-phosph 32.4 30 0.00065 20.5 1.3 16 78-93 76-91 (91)
250 PRK13189 peroxiredoxin; Provis 32.1 1.7E+02 0.0037 20.0 6.4 48 69-116 70-142 (222)
251 PF03984 DUF346: Repeat of unk 32.1 66 0.0014 16.0 2.3 15 100-114 2-16 (40)
252 COG1501 Alpha-glucosidases, fa 31.8 65 0.0014 26.7 3.5 41 77-117 321-374 (772)
253 PF13721 SecD-TM1: SecD export 31.8 58 0.0013 19.5 2.5 35 75-109 44-80 (101)
254 PTZ00137 2-Cys peroxiredoxin; 31.8 1.9E+02 0.0041 20.6 6.2 49 69-117 133-205 (261)
255 PHA02097 hypothetical protein 31.8 48 0.001 17.5 1.8 12 105-116 46-57 (59)
256 PF02630 SCO1-SenC: SCO1/SenC; 31.5 50 0.0011 21.6 2.4 19 100-118 155-173 (174)
257 PRK03822 lplA lipoate-protein 31.2 1.4E+02 0.0031 22.0 4.9 33 83-116 58-90 (338)
258 cd04907 ACT_ThrD-I_2 Second of 31.2 1.1E+02 0.0023 17.4 3.7 27 69-95 42-70 (81)
259 PF14883 GHL13: Hypothetical g 31.1 61 0.0013 23.5 2.9 18 78-95 18-35 (294)
260 PF14507 CppA_C: CppA C-termin 30.8 1.3E+02 0.0028 18.3 6.8 42 69-113 54-98 (101)
261 PRK13190 putative peroxiredoxi 30.8 84 0.0018 21.1 3.4 48 69-116 62-133 (202)
262 TIGR00288 conserved hypothetic 30.7 1.3E+02 0.0029 19.7 4.2 28 68-95 105-134 (160)
263 smart00497 IENR1 Intron encode 30.7 55 0.0012 16.4 2.1 13 102-114 3-15 (53)
264 COG4004 Uncharacterized protei 29.6 1.3E+02 0.0028 17.9 4.0 20 77-96 12-31 (96)
265 COG5397 Uncharacterized conser 29.4 53 0.0011 23.9 2.3 47 71-117 160-210 (349)
266 KOG3188 Uncharacterized conser 29.4 18 0.0004 24.9 0.0 14 13-26 169-183 (246)
267 PF13171 DUF4004: Protein of u 29.3 12 0.00026 25.5 -0.9 11 2-12 20-30 (199)
268 PF07646 Kelch_2: Kelch motif; 29.1 61 0.0013 16.1 2.0 20 101-120 30-49 (49)
269 PHA02087 hypothetical protein 28.3 63 0.0014 18.1 2.0 21 100-120 44-64 (83)
270 COG0450 AhpC Peroxiredoxin [Po 28.1 56 0.0012 22.3 2.1 45 69-113 68-137 (194)
271 PRK03094 hypothetical protein; 28.0 1.3E+02 0.0028 17.4 5.3 37 78-114 9-50 (80)
272 TIGR00545 lipoyltrans lipoyltr 27.9 1.8E+02 0.0038 21.3 4.9 34 83-117 57-90 (324)
273 PRK14581 hmsF outer membrane N 27.7 70 0.0015 26.1 3.0 18 78-95 335-352 (672)
274 PRK10629 EnvZ/OmpR regulon mod 27.5 79 0.0017 19.9 2.7 33 77-109 50-84 (127)
275 PF08915 tRNA-Thr_ED: Archaea- 27.3 1.3E+02 0.0027 19.4 3.5 22 79-100 97-118 (138)
276 TIGR03168 1-PFK hexose kinase, 27.0 2E+02 0.0044 20.1 5.0 37 80-116 64-103 (303)
277 KOG2792 Putative cytochrome C 26.5 39 0.00084 24.2 1.2 18 99-116 241-258 (280)
278 KOG1693 emp24/gp25L/p24 family 26.5 54 0.0012 22.5 1.9 14 101-114 61-74 (209)
279 PF01835 A2M_N: MG2 domain; I 26.5 45 0.00097 19.3 1.4 16 100-115 37-52 (99)
280 PRK10658 putative alpha-glucos 26.5 1.1E+02 0.0024 24.8 3.9 39 77-115 325-376 (665)
281 PF13200 DUF4015: Putative gly 26.4 1E+02 0.0022 22.6 3.4 20 76-95 60-79 (316)
282 cd04880 ACT_AAAH-PDT-like ACT 26.4 1.2E+02 0.0026 16.4 5.4 24 72-95 2-29 (75)
283 PF13986 DUF4224: Domain of un 25.5 1.1E+02 0.0023 15.6 3.4 22 79-100 17-38 (47)
284 cd02959 ERp19 Endoplasmic reti 25.2 51 0.0011 20.0 1.5 18 100-117 77-95 (117)
285 PHA01735 hypothetical protein 24.9 64 0.0014 18.1 1.7 19 77-95 33-51 (76)
286 PF09147 DUF1933: Domain of un 24.9 65 0.0014 21.8 2.0 45 76-120 77-121 (201)
287 PF04800 ETC_C1_NDUFA4: ETC co 24.8 1.7E+02 0.0037 17.7 4.4 27 69-95 47-74 (101)
288 PRK09732 hypothetical protein; 24.7 1.9E+02 0.0042 18.3 5.3 33 79-119 16-48 (134)
289 PF09299 Mu-transpos_C: Mu tra 24.6 55 0.0012 17.4 1.4 26 87-113 34-59 (62)
290 PF11762 Arabinose_Iso_C: L-ar 24.4 1.8E+02 0.0039 18.1 3.7 28 67-94 85-113 (115)
291 PF05088 Bac_GDH: Bacterial NA 24.3 5E+02 0.011 23.8 7.5 48 70-118 18-69 (1528)
292 COG1724 Predicted RNA binding 24.1 1.4E+02 0.0031 16.6 5.0 35 79-115 9-43 (66)
293 COG1999 Uncharacterized protei 24.0 2.4E+02 0.0052 19.1 5.6 43 76-118 138-189 (207)
294 PF01483 P_proprotein: Proprot 23.8 1.3E+02 0.0028 16.9 3.0 23 97-119 14-36 (87)
295 TIGR00070 hisG ATP phosphoribo 23.7 1.7E+02 0.0037 19.6 3.9 34 79-115 11-44 (182)
296 cd03018 PRX_AhpE_like Peroxire 23.6 1.9E+02 0.004 17.7 6.5 49 68-116 62-130 (149)
297 cd00340 GSH_Peroxidase Glutath 23.5 1.1E+02 0.0023 19.3 2.8 15 102-116 125-139 (152)
298 cd03010 TlpA_like_DsbE TlpA-li 23.1 1.8E+02 0.0039 17.3 6.1 48 69-116 56-117 (127)
299 PF03568 Peptidase_C50: Peptid 23.0 1.2E+02 0.0026 22.7 3.4 40 73-112 230-272 (383)
300 cd04927 ACT_ACR-like_2 Second 22.9 1.5E+02 0.0032 16.4 6.3 33 79-111 14-53 (76)
301 COG1834 N-Dimethylarginine dim 22.7 1.7E+02 0.0037 21.0 3.9 33 77-109 38-73 (267)
302 TIGR03828 pfkB 1-phosphofructo 22.7 2.7E+02 0.0059 19.3 5.1 38 79-116 63-103 (304)
303 cd08319 Death_RAIDD Death doma 22.7 12 0.00025 21.8 -1.6 8 1-8 48-55 (83)
304 PRK01686 hisG ATP phosphoribos 22.6 1.7E+02 0.0036 20.2 3.7 33 79-111 14-46 (215)
305 PF04759 DUF617: Protein of un 22.4 67 0.0015 21.3 1.7 14 99-112 142-155 (166)
306 cd07963 Anticodon_Ia_Cys Antic 22.1 1.2E+02 0.0027 19.2 2.9 21 79-99 131-151 (156)
307 PF07862 Nif11: Nitrogen fixat 22.1 88 0.0019 15.7 1.8 20 76-95 26-45 (49)
308 COG2896 MoaA Molybdenum cofact 22.0 2.2E+02 0.0047 21.1 4.4 43 76-118 202-245 (322)
309 PF03793 PASTA: PASTA domain; 22.0 1.4E+02 0.0029 15.6 4.0 18 78-95 10-27 (63)
310 PF11520 Cren7: Chromatin prot 22.0 84 0.0018 17.0 1.7 17 98-114 35-52 (60)
311 PF03979 Sigma70_r1_1: Sigma-7 21.8 29 0.00063 19.8 -0.1 23 73-95 35-57 (82)
312 PRK11899 prephenate dehydratas 21.8 2.7E+02 0.0058 20.0 4.8 42 70-111 195-246 (279)
313 PF13098 Thioredoxin_2: Thiore 21.8 1.5E+02 0.0032 17.2 3.1 19 98-116 81-99 (112)
314 COG2081 Predicted flavoprotein 21.6 3.1E+02 0.0067 21.1 5.1 36 79-114 114-155 (408)
315 cd02967 mauD Methylamine utili 21.5 1.8E+02 0.0039 16.8 5.3 42 72-113 57-109 (114)
316 TIGR01570 A_thal_3588 uncharac 21.3 71 0.0015 21.0 1.6 12 100-111 138-149 (161)
317 PF08534 Redoxin: Redoxin; In 21.2 2.1E+02 0.0046 17.5 5.8 50 68-117 62-132 (146)
318 PRK14061 unknown domain/lipoat 21.0 2.6E+02 0.0056 22.5 4.8 33 83-116 282-314 (562)
319 PF07566 DUF1543: Domain of Un 20.9 1E+02 0.0022 16.0 1.9 21 69-89 5-26 (52)
320 cd04900 ACT_UUR-like_1 ACT dom 20.9 1.6E+02 0.0034 15.9 5.2 35 79-113 15-56 (73)
321 cd03412 CbiK_N Anaerobic cobal 20.8 1.3E+02 0.0029 18.5 2.8 19 76-94 55-73 (127)
322 cd04904 ACT_AAAH ACT domain of 20.7 1.7E+02 0.0036 16.1 4.8 33 78-110 13-51 (74)
323 TIGR03137 AhpC peroxiredoxin. 20.7 2.4E+02 0.0053 18.5 4.2 48 69-116 66-135 (187)
324 COG1437 CyaB Adenylate cyclase 20.6 2.8E+02 0.0061 18.7 5.1 26 70-95 79-104 (178)
325 PRK03381 PII uridylyl-transfer 20.5 3.5E+02 0.0076 22.5 5.7 45 70-114 708-762 (774)
326 KOG4657 Uncharacterized conser 20.2 57 0.0012 22.8 1.1 15 12-26 149-163 (246)
327 COG0077 PheA Prephenate dehydr 20.2 2.8E+02 0.0061 20.1 4.5 43 70-112 195-247 (279)
328 TIGR03079 CH4_NH3mon_ox_B meth 20.1 3.8E+02 0.0082 20.4 5.2 43 69-113 345-387 (399)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=3.7e-19 Score=121.49 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=79.9
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe------------------C-CeEEEEEecCCCC--CC----
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV------------------G-AEMIHLMELPNPD--PL---- 59 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~------------------g-~~~i~l~~~~~~~--~~---- 59 (120)
.|-+|.+.+.+||+++|||++.........++..+++.. + +..|+|+...+.+ +.
T Consensus 81 lRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~~~~~y 160 (233)
T PLN02367 81 YRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDPDFKGY 160 (233)
T ss_pred EEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccccchhc
Confidence 467889999999999999998532211113445555532 2 2478887643322 10
Q ss_pred -CCCCCCCCCcceEEEEECCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEeeC
Q 033399 60 -SGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 60 -~~~~~~~~~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
.++.. ..+.+||||.|+|+++++++|+++|+++...+ .+.+.+||+|||||+|||+|..
T Consensus 161 ~~gn~~-p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 161 HNGNSE-PRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred ccCCCC-CCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 01111 13579999999999999999999999998743 2246789999999999999864
No 2
>PRK10291 glyoxalase I; Provisional
Probab=99.82 E-value=3.5e-19 Score=112.07 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=74.4
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~ 81 (120)
+-+|.+.+.+||.++|||++....+.....+..+|+..++. .+++.... +. ......++.+|+||.|+|+++
T Consensus 3 ~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~~~g~~~~hlaf~V~d~~~ 78 (129)
T PRK10291 3 RVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW-GV---DKYELGTAYGHIALSVDNAAE 78 (129)
T ss_pred EecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC-CC---CCCcCCCCeeEEEEEeCCHHH
Confidence 34678889999999999998533222123445566665542 24443211 11 111112356899999999999
Q ss_pred HHHHHHHCCCeEEec----CCC-ccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTLS----KSG-RPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~----~~g-~~~~~~~DPdGn~iEl~~~ 118 (120)
++++|+++|+++... +++ .+.+||+|||||.|||++.
T Consensus 79 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 79 ACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999998752 234 4568899999999999985
No 3
>PRK11478 putative lyase; Provisional
Probab=99.81 E-value=1.6e-18 Score=108.61 Aligned_cols=111 Identities=20% Similarity=0.279 Sum_probs=75.2
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKM 84 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~ 84 (120)
.-.|.+.+.+||.++|||++...........-...+.+ ++..++|++.+.+......+. ..+..|+||.|+|++++++
T Consensus 13 ~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~g~~hi~f~v~d~~~~~~ 91 (129)
T PRK11478 13 IATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPE-ACGLRHLAFSVDDIDAAVA 91 (129)
T ss_pred EcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCC-CCceeEEEEEeCCHHHHHH
Confidence 34678889999999999998522111001100112333 345788876543221111112 2346899999999999999
Q ss_pred HHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 85 ILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 85 ~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+|+++|+++... .+|.+.+||+|||||.|||+|
T Consensus 92 ~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 92 HLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred HHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 999999998652 356788999999999999987
No 4
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.81 E-value=6.4e-19 Score=112.02 Aligned_cols=112 Identities=11% Similarity=-0.058 Sum_probs=77.5
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCC-CC-CCCCCCCcceEEEEECCHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL-SG-RPEHGGRDRHTCIAIRDVSKLKM 84 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~-~~-~~~~~~~~~hi~f~v~d~d~~~~ 84 (120)
-.|.+.+.+||.++|||++...... .+....++..++..+.|......... .. ......+..|+||.|+|++++++
T Consensus 8 V~D~e~s~~FY~~vLGf~~~~~~~~--~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dvda~~~ 85 (136)
T cd08342 8 VGNAKQLASWFSTKLGFEPVAYHGS--EDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDAAAAYE 85 (136)
T ss_pred eCCHHHHHHHHHHhcCCeEEEecCC--CceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCHHHHHH
Confidence 3577889999999999999532211 11222334445556766543221110 00 01122356899999999999999
Q ss_pred HHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 85 ILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 85 ~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+|+++|+++... +++.+.+|++|||||+|||++..|
T Consensus 86 ~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 86 RAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred HHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 999999999763 466789999999999999999765
No 5
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=2.9e-18 Score=109.23 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=77.9
Q ss_pred eeccchhhhhhhhhhccCceEeccCCC-CC----------CCceeEEEEe--CCeEEEEEecCCCCCCC---CCCCCCCC
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPH-DK----------LPYRGAWLWV--GAEMIHLMELPNPDPLS---GRPEHGGR 68 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~-~~----------~~~~~~~l~~--g~~~i~l~~~~~~~~~~---~~~~~~~~ 68 (120)
+.-.|.+.+.+||.+ |||++...... +. .....+++.. ++..|+|++...+.... .......+
T Consensus 9 i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~~~~~g 87 (142)
T cd08353 9 IVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAPVNALG 87 (142)
T ss_pred EEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCCCCCCC
Confidence 455788999999998 99998522110 00 0112233443 34589998754332211 11122335
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
.+|+||.|+|+++++++|+++|+++... .++.+.+||+|||||+|||+|.
T Consensus 88 ~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 88 LRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred ceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 6899999999999999999999998763 3567899999999999999985
No 6
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.79 E-value=4.4e-18 Score=113.46 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=76.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-------------------CCeEEEEEecCCCCC------CC
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPDP------LS 60 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-------------------g~~~i~l~~~~~~~~------~~ 60 (120)
+=+|.+.+.+||+++|||++..........+..+++.. ++..|+|+....... ..
T Consensus 34 ~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~ 113 (185)
T PLN03042 34 RIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDPEFKGYH 113 (185)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcccccccccc
Confidence 45788999999999999998532121112333344432 234788886432211 00
Q ss_pred CCCCCCCCcceEEEEECCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEeeC
Q 033399 61 GRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 61 ~~~~~~~~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
.......+..|+||.|+|+++++++|+++|+++...+ .+.+.+||+|||||+|||++..
T Consensus 114 ~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 114 NGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 0011113578999999999999999999999997632 2356788999999999999853
No 7
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=2.7e-18 Score=106.55 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=75.6
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---CHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---DVSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d~d~ 81 (120)
.-+|.+.++.||.++|||++.........++...|+..++ ..++|++.+...+.. ......+..|+||.|+ |+++
T Consensus 8 ~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~~~~~v~~ 86 (125)
T cd07241 8 WTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVGSKEAVDE 86 (125)
T ss_pred EecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECCCHHHHHH
Confidence 3467888999999999999842211111234456777754 578887643322111 1111234689999996 4899
Q ss_pred HHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEE
Q 033399 82 LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~ 116 (120)
++++|+++|+++... .+|.+.++|+|||||.|||.
T Consensus 87 ~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 87 LTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred HHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 999999999998763 34556788999999999984
No 8
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=9.4e-18 Score=104.31 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=77.0
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l 86 (120)
-+|.+.+.+||.++||+++....+........+.+.+++..+.+................+...|++|.|+|+++++++|
T Consensus 7 v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~~~~l 86 (122)
T cd08355 7 YRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAHYERA 86 (122)
T ss_pred ECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHHHHHH
Confidence 36888999999999999996322121111223446667766767543322111000111223469999999999999999
Q ss_pred HHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 87 DKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 87 ~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++|+++... ++|.+.++|+|||||+|+|.++
T Consensus 87 ~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 87 RAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 9999998753 4788899999999999999763
No 9
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.78 E-value=9.6e-18 Score=109.73 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=77.4
Q ss_pred eccchhhhhhhhhhccCceEecc----CCC----CC----------CCceeEEEEeCC-eEEEEEecCCCCCCCCCC-CC
Q 033399 6 KRKKREINKHQRFNLLGLEINEA----RPH----DK----------LPYRGAWLWVGA-EMIHLMELPNPDPLSGRP-EH 65 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~----~~~----~~----------~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~-~~ 65 (120)
.-.|.+.+.+||+++|||++..+ .+. +. .....+++..++ ..|+|++..++....... ..
T Consensus 11 ~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~~~~~~~~~ 90 (162)
T TIGR03645 11 SVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQENPEDNFEYW 90 (162)
T ss_pred EeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCCCCcccccc
Confidence 34678889999999999988421 010 00 113345566554 479999865433211111 11
Q ss_pred CCCcceEEEEECCHHHHHHHHHHCCCeEEec------C--CCccEEEEeCCCCCeEEEEeeC
Q 033399 66 GGRDRHTCIAIRDVSKLKMILDKAGISYTLS------K--SGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 66 ~~~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~------~--~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
..+..|+||.|+|+++++++|+++|+++... + .+.+.+||+|||||.|||++..
T Consensus 91 ~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 91 KTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred cccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 2357899999999999999999999876431 1 1247899999999999999853
No 10
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=5.9e-18 Score=105.08 Aligned_cols=106 Identities=14% Similarity=0.017 Sum_probs=67.7
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l 86 (120)
-+|-+.+++||.++|||++.... +. .+.+ .++..+++................+...|++|.|+|+++++++|
T Consensus 10 v~D~~~a~~FY~~~lG~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~~~~~l 82 (120)
T cd09011 10 VKDIEKSKKFYEKVLGLKVVMDF-----GE-NVTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFLDKL 82 (120)
T ss_pred ECCHHHHHHHHHHhcCCEEeecc-----Cc-eEEE-eccceeccchhhhccCCcccccccCCceEEEEEehhhHHHHHHH
Confidence 35778888899999999984211 11 1112 12223322111000000011111223479999999999999999
Q ss_pred HHCCC-eEEe----cCCCccEEEEeCCCCCeEEEEeeC
Q 033399 87 DKAGI-SYTL----SKSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 87 ~~~Gv-~~~~----~~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
+++|+ ++.. .++|.+.+||+|||||+|||.+.+
T Consensus 83 ~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~~ 120 (120)
T cd09011 83 KRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGESM 120 (120)
T ss_pred HhcCCcEEecCcccCCCccEEEEEECCCCCEEEEeccC
Confidence 99985 6654 257889999999999999999864
No 11
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.77 E-value=1.8e-17 Score=100.64 Aligned_cols=104 Identities=38% Similarity=0.690 Sum_probs=77.8
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKM 84 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~ 84 (120)
...+-+.+++||.++||+++. .++. .....+|+..++. .++|...+...+. +...++..|++|.|+|++++++
T Consensus 7 ~v~d~~~~~~FY~~~lG~~~~-~~~~--~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d~~~~~~ 80 (114)
T cd07245 7 RVPDLEASRAFYTDVLGLEEG-PRPP--FLFPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDDLDAFRA 80 (114)
T ss_pred ecCCHHHHHHHHHHccCCccc-CcCC--CCCCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCCHHHHHH
Confidence 346788899999999999984 4433 1224478888765 7888765433211 1122345799999999999999
Q ss_pred HHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 85 ILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 85 ~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
+|+++|+++...+ ++.+++++.||+||+|||
T Consensus 81 ~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 81 RLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999987742 566889999999999996
No 12
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=4.5e-17 Score=100.70 Aligned_cols=108 Identities=19% Similarity=0.089 Sum_probs=76.5
Q ss_pred cchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHHH
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILD 87 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l~ 87 (120)
.|.+.+.+||.++||+++.............+.+..++..+.+........ .. ....+...|++|.|+|++++++++.
T Consensus 10 ~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~v~d~~~~~~~l~ 87 (122)
T cd07246 10 RDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG-SP-ASWGGTPVSLHLYVEDVDATFARAV 87 (122)
T ss_pred CCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC-CC-CCCCCceEEEEEEeCCHHHHHHHHH
Confidence 488899999999999999633221111222344666777777765322111 00 1112234799999999999999999
Q ss_pred HCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 88 KAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 88 ~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++|+++..+ .+|.+.++|+|||||+|||.|
T Consensus 88 ~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 88 AAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 999998663 467889999999999999987
No 13
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=3.9e-17 Score=101.09 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=74.4
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMI 85 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~ 85 (120)
-.|.+.+.+||.++|||++...........-...+.. ++..++|+...........+. ..+..|++|.|+|+++++++
T Consensus 11 v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-~~g~~h~~~~v~d~~~~~~~ 89 (125)
T cd08352 11 CSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPE-ACGLRHLAFSVEDIEAAVKH 89 (125)
T ss_pred cCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCc-CCCceEEEEEeCCHHHHHHH
Confidence 4678888999999999999532111101111122333 445778776443221111122 23468999999999999999
Q ss_pred HHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 86 LDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 86 l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
|+++|+++... ..+.+.+|++||+||+|||+|
T Consensus 90 l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 90 LKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred HHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999998652 346678999999999999976
No 14
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=1.1e-17 Score=104.39 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=77.8
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCC-CCCC-CCCCCCCcceEEEEECCHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-PLSG-RPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~-~~~~-~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
.-+|.+.++.||.++|||++....+....+...+++..++..++|+...... +... .....++.+|+||.|+|+++++
T Consensus 8 ~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v~di~~~~ 87 (128)
T TIGR03081 8 AVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEVDDIEAAL 87 (128)
T ss_pred EeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEcCCHHHHH
Confidence 4568888999999999999953211111234556677777788887642211 1000 0111235679999999999999
Q ss_pred HHHHHCCCeEEec-----CCCccEEEE--eCCCCCeEEEEe
Q 033399 84 MILDKAGISYTLS-----KSGRPAIFT--RDPDANALEFTQ 117 (120)
Q Consensus 84 ~~l~~~Gv~~~~~-----~~g~~~~~~--~DPdGn~iEl~~ 117 (120)
++|+++|+++... .+|.+.+|+ +|||||+|||.|
T Consensus 88 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 88 ETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred HHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999998652 255677777 799999999975
No 15
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=5.9e-17 Score=100.12 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=75.9
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d 80 (120)
....+.+.+.+||.++|||++....+........+|+..++ ..+++.......+ . .....+..|++|.|+|++
T Consensus 6 i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~i~~~v~did 82 (121)
T cd07233 6 LRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE--P-YDNGNGFGHLAFAVDDVY 82 (121)
T ss_pred EEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC--C-cCCCCCeEEEEEEeCCHH
Confidence 45578899999999999999853222211233446666644 3566654322111 1 111224589999999999
Q ss_pred HHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEE
Q 033399 81 KLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~ 116 (120)
+++++|+++|+++...+ .+.+.+||+|||||+|||+
T Consensus 83 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 83 AACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 99999999999998742 4567889999999999985
No 16
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=7.8e-17 Score=104.99 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=75.2
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 78 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g---~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d--- 78 (120)
..-.|.+.+++||.++|||++.. +.. ....|+..+ +..|+|++.+.... ..+. .++..|+||.|+|
T Consensus 7 i~V~Dle~s~~FY~~~LG~~~~~-~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~-~~~l~Hiaf~v~d~~d 78 (157)
T cd08347 7 LTVRDPEATAAFLTDVLGFREVG-EEG----DRVRLEEGGGGPGAVVDVLEEPDQPR--GRPG-AGTVHHVAFRVPDDEE 78 (157)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEe-eeC----CEEEEEecCCCCCCEEEEEeCCCCCC--Cccc-CCceEEEEEECCCHHH
Confidence 45578899999999999999952 221 123344444 45788876432111 1111 2356899999998
Q ss_pred HHHHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEee
Q 033399 79 VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++++|+++|+++... ..+.+++||+|||||.|||++.
T Consensus 79 vd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 79 LEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATD 120 (157)
T ss_pred HHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEEC
Confidence 899999999999986542 2345789999999999999874
No 17
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=1.4e-16 Score=98.37 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=71.2
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCC-CCCCCCCCCcceEEEEECCHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~i~l~~~~~~~~~-~~~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
-.|.+.+++||.++|||++.. ... ..+.+..++ ..|.+......... ...+.. +...|++|.|+|+++++
T Consensus 9 v~D~~~s~~FY~~~lG~~~~~-~~~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~v~did~~~ 81 (119)
T cd08359 9 TDDLAETADFYVRHFGFTVVF-DSD-----WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQ-GQGLILNFEVDDVDAEY 81 (119)
T ss_pred ECCHHHHHHHHHHhhCcEEEe-ccC-----cEEEEecCCCceEEEEccCCCCCCcchhcccC-CceEEEEEEECCHHHHH
Confidence 357888999999999999952 211 123344444 34555443221111 011111 22359999999999999
Q ss_pred HHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 84 MILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 84 ~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++|+++|+++... ++|.+.++|+|||||+|||+|
T Consensus 82 ~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 82 ERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999988653 467789999999999999986
No 18
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=2.3e-16 Score=96.68 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=73.9
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC--C---eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG--A---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 79 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g--~---~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~ 79 (120)
.+..|.+.+++||.++|||++....+. ..+ ..|+.+. + ..+++...+...+. .....++..|++|.|+|+
T Consensus 4 l~v~d~~~~~~fY~~~lG~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 4 LYVDDQDKALAFYTEKLGFEVREDVPM-GGG--FRWVTVAPPGSPETSLVLAPPANPAAM--SGLQPGGTPGLVLATDDI 78 (119)
T ss_pred EEeCCHHHHHHHHHhccCeEEEEeecc-CCC--cEEEEEeCCCCCeeEEEEeCCCCcccc--ccccCCCceEEEEEehHH
Confidence 456788889999999999999633221 012 2354442 2 34555433322111 111223457999999999
Q ss_pred HHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEe
Q 033399 80 SKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 80 d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~ 117 (120)
++++++|+++|+++...+ .+.+.+|++|||||.|||.|
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 999999999999997642 34588999999999999975
No 19
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2.5e-16 Score=97.44 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=76.2
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC-HHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-VSKLKM 84 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d-~d~~~~ 84 (120)
...|.+.+++||.++|||++. .++. . ....++..++..+++.......... ......+..|+||.|++ ++++++
T Consensus 10 ~v~d~~~s~~Fy~~~lG~~~~-~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~hi~~~~~~~~~~~~~ 84 (125)
T cd07253 10 TVADIEATLDFYTRVLGMEVV-RFGE--E-VGRKALRFGSQKINLHPVGGEFEPA-AGSPGPGSDDLCLITEPPIDELVA 84 (125)
T ss_pred EecCHHHHHHHHHHHhCceee-cccc--c-CCceEEEeCCEEEEEecCCCccCcC-ccCCCCCCceEEEEecccHHHHHH
Confidence 456889999999999999995 3322 1 1245677777777776533221111 11112346899999975 999999
Q ss_pred HHHHCCCeEEecC-------CCccEEEEeCCCCCeEEEEee
Q 033399 85 ILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 85 ~l~~~Gv~~~~~~-------~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+|+++|+++...+ ++.+++||+|||||+||+.++
T Consensus 85 ~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 85 HLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred HHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9999999986521 235789999999999999874
No 20
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.73 E-value=7.9e-17 Score=101.86 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=74.6
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC--HHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--VSKLKM 84 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d--~d~~~~ 84 (120)
.+|-+.+++||.++|||++....+ ..+++.+++..+.+...+.. + .. ...++.+|+||.|++ ++++++
T Consensus 8 V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~-~-~~--~~~~~~~hiaf~v~~~dld~~~~ 77 (131)
T cd08363 8 VSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDI-P-RN--EIRQSYTHIAFTIEDSEFDAFYT 77 (131)
T ss_pred ECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCC-C-cC--CcCccceEEEEEecHHHHHHHHH
Confidence 467888999999999999953211 23567777777776543321 1 11 112356899999984 999999
Q ss_pred HHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 85 ILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 85 ~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+|+++|+++... .++.+.+||+|||||+|||.+.
T Consensus 78 ~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 78 RLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence 999999998652 2456899999999999999875
No 21
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.73 E-value=1.4e-16 Score=98.98 Aligned_cols=99 Identities=24% Similarity=0.330 Sum_probs=72.8
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l 86 (120)
-+|.+.+++||.+ |||++. .+.. . .-+++..++..++|...+... +. ....|++|.|+|+++++++|
T Consensus 10 v~Dl~~s~~FY~~-lG~~~~-~~~~---~-~~~~~~~~~~~l~l~~~~~~~-----~~--~~~~~~~~~v~dvd~~~~~l 76 (120)
T cd08350 10 SRDLDATEAFYAR-LGFSVG-YRQA---A-GYMILRRGDLELHFFAHPDLD-----PA--TSPFGCCLRLPDVAALHAEF 76 (120)
T ss_pred cCCHHHHHHHHHH-cCCEEE-ecCC---C-CEEEEEcCCEEEEEEecCcCC-----CC--CCcceEEEEeCCHHHHHHHH
Confidence 4678899999999 999995 3322 1 223455677788887643211 11 12358999999999999999
Q ss_pred HHCCCeEE-------ec----CCCccEEEEeCCCCCeEEEEee
Q 033399 87 DKAGISYT-------LS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 87 ~~~Gv~~~-------~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++|+++. .. ++|.+.++|+|||||.|||.|.
T Consensus 77 ~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 77 RAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 99999842 11 3788999999999999999884
No 22
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.4e-16 Score=98.34 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=70.8
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l 86 (120)
-+|-+.+++||.+ |||++.... . ..+++..++..+.|...... . . . ...|++|.|+|+++++++|
T Consensus 9 v~Dl~~s~~FY~~-LGf~~~~~~-~-----~~~~l~~~~~~l~l~~~~~~-~-----~-~-~~~~~~~~v~did~~~~~l 73 (113)
T cd08356 9 AKDFAESKQFYQA-LGFELEWEN-D-----NLAYFRLGNCAFYLQDYYVK-D-----W-A-ENSMLHLEVDDLEAYYEHI 73 (113)
T ss_pred cccHHHHHHHHHH-hCCeeEecC-C-----CEEEEEcCCEEEEeecCCCc-c-----c-c-cCCEEEEEECCHHHHHHHH
Confidence 3577889999987 999995322 1 24677777777766432111 0 1 1 2358999999999999999
Q ss_pred HHCCCeEE------e---cCCCccEEEEeCCCCCeEEEEe
Q 033399 87 DKAGISYT------L---SKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 87 ~~~Gv~~~------~---~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++|+++. . .++|.+.++|+|||||+|+|.+
T Consensus 74 ~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 74 KALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 99998752 1 2578899999999999999975
No 23
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.73 E-value=1.5e-16 Score=102.17 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=70.6
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCC-CceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH--
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK-- 81 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~-- 81 (120)
.+-+|.+.+..||.++|||++......... .....|+..++. .+.+..... + .++.+|+||.|+|+++
T Consensus 12 l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~------~--~~~~~Hiaf~v~d~~~l~ 82 (143)
T cd07243 12 LTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG------P--DGKLHHFSFFLESWEDVL 82 (143)
T ss_pred EecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC------C--CCCceEEEEEcCCHHHHH
Confidence 466788889999999999997422111001 123457765443 233222110 1 1347899999999887
Q ss_pred -HHHHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEe
Q 033399 82 -LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 82 -~~~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~ 117 (120)
+.++|+++|+++...+ ++.+++||+|||||.|||++
T Consensus 83 ~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 83 KAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred HHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 5689999999986532 34578999999999999975
No 24
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.72 E-value=3.4e-16 Score=95.40 Aligned_cols=103 Identities=26% Similarity=0.325 Sum_probs=74.8
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMI 85 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~ 85 (120)
.-++.+.+++||.++|||++..... ....+++..++..++|.......+. . .....|++|.|+|+++++++
T Consensus 5 ~v~d~~~s~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 75 (112)
T cd08349 5 PVSDIERSLAFYRDVLGFEVDWEHP----EPGYAFLSRGGAQLMLSEHDGDEPV----P-LGRGGSVYIEVEDVDALYAE 75 (112)
T ss_pred EECCHHHHHHHHHhccCeEEEEEcC----CCcEEEEEeCCEEEEEeccCCCCCC----C-CCCcEEEEEEeCCHHHHHHH
Confidence 3467889999999999999953221 1223456666677877654332110 1 12346999999999999999
Q ss_pred HHHCCCe-EEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 86 LDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 86 l~~~Gv~-~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
|+++|++ +... .++.+.++++||+||.|||+|
T Consensus 76 l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 76 LKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 9999998 4432 366789999999999999986
No 25
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.72 E-value=2.6e-16 Score=100.32 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=75.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--CHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DVSKLK 83 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--d~d~~~ 83 (120)
.-.|-+.+++||.++|||++. .+. ...+++..++..+.+...+.. + .....++.+|++|.|+ |+++++
T Consensus 11 ~v~Dl~~s~~FY~~~lG~~~~-~~~-----~~~~~~~~~g~~l~l~~~~~~-~---~~~~~~~~~hiaf~v~~~dv~~~~ 80 (139)
T PRK04101 11 SVSNLEKSIEFYEKVLGAKLL-VKG-----RKTAYFDLNGLWIALNEEKDI-P---RNEIHQSYTHIAFSIEEEDFDHWY 80 (139)
T ss_pred EecCHHHHHHHHHhccCCEEE-eec-----CeeEEEecCCeEEEeeccCCC-C---CccCCCCeeEEEEEecHHHHHHHH
Confidence 346778888999999999995 221 134677777776666432211 1 1111234579999998 999999
Q ss_pred HHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 84 MILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 84 ~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++|+++... .++.+.+||+|||||+|||.+.
T Consensus 81 ~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 81 QRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred HHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 9999999998652 2467999999999999999864
No 26
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.72 E-value=1.9e-16 Score=102.15 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~ 81 (120)
.-.|.+.+++||.++|||++.............+++..++. .+++.......+ .....+..|++|.|+|+++
T Consensus 24 ~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~g~~hi~f~v~dld~ 99 (150)
T TIGR00068 24 RVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEK----YDLGNGFGHIAIGVDDVYK 99 (150)
T ss_pred EecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCc----ccCCCceeEEEEecCCHHH
Confidence 45788899999999999998532221111222344544431 233322111111 1112346799999999999
Q ss_pred HHHHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++|+++|+++...+ .+.+.+||+|||||+|||++.
T Consensus 100 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 100 ACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred HHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 9999999999886532 234678999999999999985
No 27
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=2.8e-16 Score=99.26 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred eccchhhhhhhhhhccCceEeccCCCC-CCC-ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--CHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHD-KLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DVSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~-~~~-~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--d~d~ 81 (120)
.-.|.+.+++||.++|||++.. +... ... ....|+..++..+++.+... +. ....+|+||.|+ |+++
T Consensus 11 ~V~dl~~s~~FY~~~lG~~~~~-~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-------~~-~~~~~Hiaf~v~~~~ld~ 81 (131)
T cd08364 11 IVKDLNKTTAFLQNIFNAREVY-SSGDKTFSLSKEKFFLIGGLWIAIMEGDS-------LQ-ERTYNHIAFKISDSDVDE 81 (131)
T ss_pred EeCCHHHHHHHHHHHhCCeeEE-ecccccccccceeEEEcCCeEEEEecCCC-------CC-CCCceEEEEEcCHHHHHH
Confidence 4467888899999999998843 3221 011 11234555666777753221 11 124689999998 7999
Q ss_pred HHHHHHHCCCeEEec---CC-CccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTLS---KS-GRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~---~~-g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++|+++|+++... .. +.+++||+|||||.|||.+.
T Consensus 82 ~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 82 YTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 999999999998653 23 35899999999999999863
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.71 E-value=7.8e-16 Score=94.40 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=73.4
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKM 84 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~ 84 (120)
.-+|.+.+++||.++|||++...... ...-+++..++ ..+.++...... +. .+...|++|.|+|++++++
T Consensus 7 ~v~d~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~f~v~di~~~~~ 77 (114)
T cd07247 7 PTTDPERAKAFYGAVFGWTFEDMGDG---GGDYAVFSTGGGAVGGLMKAPEPA-----AG-SPPGWLVYFAVDDVDAAAA 77 (114)
T ss_pred eCCCHHHHHHHHHhccCceeeeccCC---CCceEEEEeCCccEEEEecCCCCC-----CC-CCCeEEEEEEeCCHHHHHH
Confidence 34678889999999999999532211 11224455554 456665543221 11 1234699999999999999
Q ss_pred HHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 85 ILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 85 ~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+|+++|+++... +++.+.++|+|||||.|||+|
T Consensus 78 ~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 78 RVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 999999998763 345689999999999999986
No 29
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=7.4e-16 Score=95.76 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=72.6
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCC--CC-CCC---CCCCCCCCcceEEEEECCH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPN--PD-PLS---GRPEHGGRDRHTCIAIRDV 79 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~--~~-~~~---~~~~~~~~~~hi~f~v~d~ 79 (120)
.-.|.+.+.+||.++|||++....+. . .-..+..++..+.+..... .. +.. ..+...+...|++|.|+|+
T Consensus 7 ~v~D~~~s~~FY~~~lG~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di 82 (125)
T cd07264 7 YVEDVEKTLEFYERAFGFERRFLHES---G-DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVTDDV 82 (125)
T ss_pred EEcCHHHHHHHHHHhhCCeEEeecCC---C-cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEcCCH
Confidence 45788999999999999998522221 1 1112333455555543211 00 000 1111112235999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 80 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 80 d~~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++++++++|+++... ++|.+.++++|||||.|||.++
T Consensus 83 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 83 AAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred HHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999998653 4777889999999999999874
No 30
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.70 E-value=2.5e-16 Score=95.59 Aligned_cols=97 Identities=26% Similarity=0.430 Sum_probs=68.1
Q ss_pred cchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHH
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
+|.+.+++||.++|||++....+ ..+.+..+.. ...+.+.+.. +....+..|++|.|+|+++++
T Consensus 4 ~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~dv~~~~ 71 (108)
T PF12681_consen 4 SDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDP------PGPPGGGFHLCFEVEDVDALY 71 (108)
T ss_dssp SSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESS------SSSSSSEEEEEEEESHHHHHH
T ss_pred CCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCcc------ccCCCceeEEEEEEcCHHHHH
Confidence 57788999999999999964221 2244555421 2333333211 111234579999999999999
Q ss_pred HHHHHCCCeEEe----cCCCccEEEEeCCCCCeEEEE
Q 033399 84 MILDKAGISYTL----SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 84 ~~l~~~Gv~~~~----~~~g~~~~~~~DPdGn~iEl~ 116 (120)
++|+++|+++.. .++|.+.++|.|||||+|||+
T Consensus 72 ~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 72 ERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 999999999765 257789999999999999985
No 31
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.69 E-value=1.2e-15 Score=94.77 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=70.3
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeE--EEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~--i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
+-.|-+.+++||.++|||++. .++. ...+|+..++.. +.|...+ . .+..|++|.|++ ++
T Consensus 9 ~v~Dl~~s~~FY~~~LG~~~~-~~~~----~~~~~~~~~~~~~~~~l~~~~---------~--~~~~~~~f~v~~~~dl~ 72 (120)
T cd07252 9 ESSDLDAWRRFATDVLGLQVG-DRPE----DGALYLRMDDRAWRIAVHPGE---------A--DDLAYAGWEVADEAALD 72 (120)
T ss_pred EeCCHHHHHHHHHhccCceec-cCCC----CCeEEEEccCCceEEEEEeCC---------C--CceeEEEEEECCHHHHH
Confidence 456778889999999999984 3322 134677776543 4442211 1 135799999974 88
Q ss_pred HHHHHHHHCCCeEEec-------CCCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~-------~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++... ..+.+.+||+|||||.||++..
T Consensus 73 ~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 73 ALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 9999999999999752 1334789999999999999863
No 32
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=6.2e-16 Score=94.63 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=72.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--CHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DVSKLK 83 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--d~d~~~ 83 (120)
+-.|.+.+++||.++|||++. .+.+ ...|+..++..+.+...+.. + ...+...|++|.|+ |+++++
T Consensus 5 ~v~d~~~s~~Fy~~~lg~~~~-~~~~-----~~~~~~~~~~~l~~~~~~~~-~-----~~~~~~~hiaf~v~~~d~~~~~ 72 (113)
T cd08345 5 IVKDLNKSIAFYRDILGAELI-YSSS-----KEAYFELAGLWICLMEEDSL-Q-----GPERTYTHIAFQIQSEEFDEYT 72 (113)
T ss_pred EECCHHHHHHHHHHhcCCeee-eccC-----ceeEEEecCeEEEeccCCCc-C-----CCCCCccEEEEEcCHHHHHHHH
Confidence 456788899999999999995 3322 23566666666555432211 1 11234589999994 799999
Q ss_pred HHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 84 MILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 84 ~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++|+++... ..+.+.+|++|||||+|||...
T Consensus 73 ~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 73 ERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 9999999998652 2356899999999999999863
No 33
>PLN02300 lactoylglutathione lyase
Probab=99.69 E-value=6.6e-16 Score=109.21 Aligned_cols=111 Identities=24% Similarity=0.283 Sum_probs=75.5
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~----~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d 80 (120)
.+-.|.+.+++||+++|||++..........+..+|+..++. .+++....... ......+..|+||.|+|++
T Consensus 30 l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~----~~~~~~g~~hia~~v~dvd 105 (286)
T PLN02300 30 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVD----KYDIGTGFGHFGIAVEDVA 105 (286)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCC----ccccCCCccEEEEEeCCHH
Confidence 345788999999999999999532111112334567766532 34443221111 1112235689999999999
Q ss_pred HHHHHHHHCCCeEEec----CC-CccEEEEeCCCCCeEEEEeeC
Q 033399 81 KLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~----~~-g~~~~~~~DPdGn~iEl~~~~ 119 (120)
+++++|+++|+++... +. +.+.+||+|||||.|||++..
T Consensus 106 ~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 106 KTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred HHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 9999999999998753 22 356789999999999999864
No 34
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.69 E-value=1.9e-15 Score=92.57 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=69.9
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC---eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~---~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
-.|.+.+++||.++|||+.... . + ..+++..++ ..+.+...... .....|++|.|+|+++++
T Consensus 8 v~Dl~~s~~FY~~~lG~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d~~~~~ 72 (112)
T cd07238 8 VADPEAAAAFYADVLGLDVVMD-H----G-WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDDVDAAL 72 (112)
T ss_pred cCCHHHHHHHHHHhcCceEEEc-C----C-ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCCHHHHH
Confidence 3578889999999999998521 1 1 123344322 34555432110 112469999999999999
Q ss_pred HHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 84 MILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 84 ~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++|+++... .+|.+.+||.|||||.|||+++
T Consensus 73 ~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 73 ARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999998763 4677899999999999999875
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=3.8e-16 Score=101.21 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=70.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCC-CCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 82 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~ 82 (120)
.-+|-+.+++||+++|||++...-... ......+|+.+++. .+...... . ...+ .++.+|+||.|+|++++
T Consensus 8 ~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l-~~~~--~~g~~Hiaf~v~die~~ 81 (153)
T cd07257 8 EVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLA---L-AQGP--ESGVHHAAFEVHDFDAQ 81 (153)
T ss_pred ecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHH---H-hcCC--CCceeEEEEEcCCHHHH
Confidence 456788899999999999985211100 01234567776432 11110000 0 0011 23579999999999998
Q ss_pred H---HHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 83 K---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 83 ~---~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
. ++|+++|+++...+ ....++|++|||||+|||+..
T Consensus 82 ~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 82 GLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred HHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 6 99999999987531 224567999999999999863
No 36
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=9.5e-16 Score=95.36 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=71.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE--CCHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI--RDVSKLK 83 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v--~d~d~~~ 83 (120)
.-+|-+.+++||.++|||++....+ ...|+..++..+.+...+.. +. .+...|+||.| +|+++++
T Consensus 8 ~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~------~~-~~~~~hi~f~v~~~dl~~~~ 74 (121)
T cd07244 8 AVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANV------GP-AKDYTHYAFSVSEEDFASLK 74 (121)
T ss_pred EECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCC------CC-CCCeeeEEEEeCHHHHHHHH
Confidence 3467889999999999999853221 23566666655555322211 11 12457999999 5799999
Q ss_pred HHHHHCCCeEEecC-CCccEEEEeCCCCCeEEEEee
Q 033399 84 MILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 84 ~~l~~~Gv~~~~~~-~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++|+++...+ ...+.+||.|||||.|||++.
T Consensus 75 ~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 75 EKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 99999999986632 235789999999999999863
No 37
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.5e-15 Score=96.12 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=69.5
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~ 81 (120)
.-.|-+.+++||.++|||++. .+.. ...+|+..++ ..+.|...+. ...+.+|+||.|+|+++
T Consensus 10 ~v~dl~~s~~FY~~vlGl~~~-~~~~----~~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hiaf~v~d~~~ 75 (134)
T cd08360 10 FVPDVEAAEAFYRDRLGFRVS-DRFK----GRGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAAFEVGDIDE 75 (134)
T ss_pred EcCCHHHHHHHHHHhcCCEEE-EEec----CcEEEEECCCCCCCcEEEEecCCC---------CCCcceEEEEEeCCHHH
Confidence 346788899999999999985 3221 1356777642 2444433221 12357899999999887
Q ss_pred HH---HHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEe
Q 033399 82 LK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 82 ~~---~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~ 117 (120)
+. ++|+++|+++...+ .+..++||+||+||.|||..
T Consensus 76 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 76 VMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred HHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 76 59999999986421 23467899999999999985
No 38
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.68 E-value=1.7e-15 Score=94.19 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=68.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-C-e--EEEEEecCCCCCCCCCCCCCCCcceEEEEEC---C
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-A-E--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---D 78 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~-~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d 78 (120)
.-+|.+.+++||.++|||++....++ ..+|+... + . .+.+. .. . ..+..|+||.|+ |
T Consensus 11 ~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~--~~--------~-~~~~~hiaf~v~~~~d 74 (122)
T cd07265 11 RVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLR--EA--------D-TAGLDFMGFKVLDDAD 74 (122)
T ss_pred EeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEec--cC--------C-CCCeeEEEEEeCCHHH
Confidence 45678899999999999998522111 23555542 1 1 23331 11 0 123589999997 7
Q ss_pred HHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEeeC
Q 033399 79 VSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
+++++++|+++|+++... +...+++||+|||||.|||.+..
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 999999999999998652 12357899999999999998764
No 39
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=1.4e-15 Score=94.20 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=73.2
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCC-CceeEEEEe----CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--- 77 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~-~~~~~~l~~----g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--- 77 (120)
.-.+.+.+++||.++|||++....+.... .....++.. ++..++|+..+..... .+...++..|+||.|+
T Consensus 8 ~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~f~v~~~~ 85 (126)
T cd08346 8 ITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIAFSVPSEA 85 (126)
T ss_pred EcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEEEEcCCHH
Confidence 35678899999999999998533222000 111223332 2346778765432210 1111234689999998
Q ss_pred CHHHHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEE
Q 033399 78 DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~ 116 (120)
++++++++++++|+++... ..+.+.+||+||+||+|||+
T Consensus 86 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 86 SLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred HHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 4799999999999998652 35678999999999999984
No 40
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=3.4e-15 Score=92.47 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=70.6
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VSKL 82 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d~~ 82 (120)
+-.|.+.+++||.++|||+.. .+.+ . ...| ..++..+.+.....+.. +. ++..|++|.|+| ++++
T Consensus 8 ~v~d~~~a~~FY~~~lG~~~~-~~~~---~-~~~~-~~~~~~~~~~~~~~~~~----~~--~~~~h~~f~v~~~~dl~~~ 75 (120)
T cd07254 8 NVDDLEASIAFYSKLFGVEPT-KVRD---D-YAKF-LLEDPRLNFVLNERPGA----PG--GGLNHLGVQVDSAEEVAEA 75 (120)
T ss_pred EeCCHHHHHHHHHHHhCCeEe-cccC---C-eeEE-EecCCceEEEEecCCCC----CC--CCeeEEEEEeCCHHHHHHH
Confidence 446788899999999999984 2221 1 1233 33333333322211110 11 346899999987 7889
Q ss_pred HHHHHHCCCeEEecC------CCccEEEEeCCCCCeEEEEeeCC
Q 033399 83 KMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~~------~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+++|.++|+++...+ ...+++|++||+||.|||.+.+|
T Consensus 76 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 119 (120)
T cd07254 76 KARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTLG 119 (120)
T ss_pred HHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEeec
Confidence 999999999987632 12467999999999999999876
No 41
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=1.3e-15 Score=94.76 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=75.1
Q ss_pred ccchhhhhhhhhhccCceEeccCCCC-CCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCcceEEEEECCHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~i~l~~~~~~~~~~~--~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
-.|.+.+++||.++|||+.....+.. ......+++..++..++|++......... ......+..|+||.|+|+++++
T Consensus 8 v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v~d~~~~~ 87 (128)
T cd07249 8 VPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEVDDIDAAL 87 (128)
T ss_pred eCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEeCCHHHHH
Confidence 46788999999999999995322221 12233566777777888887433221100 0012235689999999999999
Q ss_pred HHHHHCCCeEEecC-----CCccEEEEeCCC--CCeEEEEe
Q 033399 84 MILDKAGISYTLSK-----SGRPAIFTRDPD--ANALEFTQ 117 (120)
Q Consensus 84 ~~l~~~Gv~~~~~~-----~g~~~~~~~DPd--Gn~iEl~~ 117 (120)
++|+++|+++...+ +|...+|+.||| ||+|||++
T Consensus 88 ~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 88 ARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred HHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999987642 344545554555 99999975
No 42
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=3e-15 Score=93.34 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=71.4
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--CHHH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DVSK 81 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--d~d~ 81 (120)
.+-.|.+.+++||.++|||++.. . . + ..+++..++ ..+.+...+. .....|++|.|+ |+++
T Consensus 10 l~v~Dl~~s~~FY~~~lG~~~~~-~-~---~-~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~v~~~dl~~ 73 (123)
T cd08351 10 VPARDREASAEFYAEILGLPWAK-P-F---G-PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFLVSEEEFDR 73 (123)
T ss_pred EEcCCHHHHHHHHHHhcCCEeee-c-c---C-CEEEEEcCCCcEEEEecCCC----------CCCcceEEEEeCHHHHHH
Confidence 45678888999999999999952 1 1 1 123445443 3555543210 112479999997 6999
Q ss_pred HHHHHHHCCCeEEec-----------CCCccEEEEeCCCCCeEEEEeeC
Q 033399 82 LKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~-----------~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
++++|+++|+++... .+|.+.+||+|||||.|||++.+
T Consensus 74 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 74 IFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 999999999998541 25679999999999999999865
No 43
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=3.1e-15 Score=93.44 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=75.9
Q ss_pred eeccchhhhhhhhhhcc---CceEeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---
Q 033399 5 YKRKKREINKHQRFNLL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--- 77 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vL---G~~~~~~~~~~~~~~~~~~l~~-g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--- 77 (120)
.+-.|.+.++.||.++| ||++.. +.. ....|+.. ++..+.|.+.......... ....+..|+||.|+
T Consensus 7 i~v~d~~~~~~Fy~~~l~~~G~~~~~-~~~----~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~g~~hia~~v~~~~ 80 (128)
T cd07242 7 LTVRDLERSRAFYDWLLGLLGFEEVK-EWE----DGRSWRAGDGGTYLVLQQADGESAGRHD-RRNPGLHHLAFRAPSRE 80 (128)
T ss_pred EEeCCHHHHHHHHHHHHhhcCCEEEE-eec----cCceEEecCCceEEEEEecccCCCcccc-cCCcCeeEEEEEcCCHH
Confidence 34567888999999999 999963 221 12345554 5567888765433211011 11234689999997
Q ss_pred CHHHHHHHHHHCCCeEEecC-------CCccEEEEeCCCCCeEEEEee
Q 033399 78 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~-------~g~~~~~~~DPdGn~iEl~~~ 118 (120)
|+++++++|+++|+++...+ .+.+.+||+|||||+|||+.+
T Consensus 81 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 81 AVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 48899999999999987631 346799999999999999863
No 44
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.66 E-value=3e-15 Score=92.10 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=70.2
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMI 85 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~ 85 (120)
.-.|.+.+++||.+ |||++. .+.. ..+|+..++....++..... . .+...|++|.|+|.+++.+.
T Consensus 10 ~v~Dl~~s~~FY~~-lGl~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~af~v~~~~~~~~~ 74 (113)
T cd07267 10 EHPDLDKAERFLTD-FGLEVA-ARTD-----DELYYRGYGTDPFVYVARKG-------E-KARFVGAAFEAASRADLEKA 74 (113)
T ss_pred ccCCHHHHHHHHHH-cCCEEE-EecC-----CeEEEecCCCccEEEEcccC-------C-cCcccEEEEEECCHHHHHHH
Confidence 45678889999999 999984 3321 34677665433233222111 0 12467999999999999999
Q ss_pred HHHCCCeEEec---CCCccEEEEeCCCCCeEEEEe
Q 033399 86 LDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 86 l~~~Gv~~~~~---~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++.|+.+... +++.+++||+|||||.|||+.
T Consensus 75 ~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 75 AALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred HHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999987653 456789999999999999975
No 45
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=6.3e-15 Score=91.11 Aligned_cols=107 Identities=25% Similarity=0.429 Sum_probs=75.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCC-C-CCCCCCCcceEEEEE--CCHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLS-G-RPEHGGRDRHTCIAI--RDVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~-~-~~~~~~~~~hi~f~v--~d~d 80 (120)
+..+.+.++.||.++|||++. .+++ ...+++..++ ..+.++......+.. . .+....+..|++|.| +|++
T Consensus 7 ~v~d~~~s~~Fy~~~lG~~~~-~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dl~ 81 (122)
T cd08354 7 YVDDLEAAEAFYEDVLGLELM-LKED----RRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPAEELA 81 (122)
T ss_pred EeCCHHHHHHHHHhccCCEEe-ecCC----CceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCHHHHH
Confidence 456788999999999999995 3332 1235677776 456555532211100 0 011123467999999 4799
Q ss_pred HHHHHHHHCCCeEEec---CCCccEEEEeCCCCCeEEEEe
Q 033399 81 KLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~---~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++++++.++|+++... .++.+.+||+|||||+|||++
T Consensus 82 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 82 EWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred HHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEec
Confidence 9999999999988663 356788999999999999986
No 46
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=6.2e-15 Score=92.25 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=69.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
.-.|.+.+.+||.++|||++. .+.. ..+|+..++. .+.+.... ....|+||+|+| ++
T Consensus 13 ~v~d~~~s~~FY~~vLG~~~~-~~~~-----~~~~l~~~~~~~~i~l~~~~------------~~~~~iaf~v~~~~dv~ 74 (124)
T cd08361 13 GTRDLAGATRFATDILGLQVA-ERTA-----KATYFRSDARDHTLVYIEGD------------PAEQASGFELRDDDALE 74 (124)
T ss_pred eeCCHHHHHHHHHhccCceec-cCCC-----CeEEEEcCCccEEEEEEeCC------------CceEEEEEEECCHHHHH
Confidence 456788899999999999985 3221 2467777543 33332110 124799999985 99
Q ss_pred HHHHHHHHCCCeEEec-------CCCccEEEEeCCCCCeEEEEeeC
Q 033399 81 KLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~-------~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
+++++|+++|+++... ..+.+.+||+|||||.||++..+
T Consensus 75 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 75 SAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred HHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9999999999998662 23356789999999999998753
No 47
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=9.1e-15 Score=90.91 Aligned_cols=104 Identities=25% Similarity=0.287 Sum_probs=72.4
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---CHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---DVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d~d 80 (120)
.-.+.+.+++||.++|||++.. ... ..+++..++ ..+.|...+.... ......+..|++|.|+ +++
T Consensus 9 ~v~d~~~~~~Fy~~~lG~~~~~-~~~-----~~~~l~~~~~~~~l~l~~~~~~~~---~~~~~~~~~hi~f~v~~~~~v~ 79 (125)
T cd07255 9 RVADLERSLAFYQDVLGLEVLE-RTD-----STAVLGTGGKRPLLVLEEDPDAPP---APPGATGLYHFAILLPSRADLA 79 (125)
T ss_pred EECCHHHHHHHHHhccCcEEEE-cCC-----CEEEEecCCCeEEEEEEeCCCCCc---ccCCCCcEEEEEEECCCHHHHH
Confidence 3467788999999999999963 211 245666665 3455544332110 1111234689999997 489
Q ss_pred HHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++... ....+++||+|||||+|||...
T Consensus 80 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 80 AALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred HHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEe
Confidence 9999999999988653 2224789999999999999864
No 48
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.65 E-value=7.4e-15 Score=92.54 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=71.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH---
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS--- 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d--- 80 (120)
.-++.+.+++||.++|||++...... +.....+|+..++. .+.+.... . ..+..|++|.|+|++
T Consensus 6 ~V~dl~~a~~Fy~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---------~-~~~~~hl~~~v~d~~~~~ 74 (131)
T cd08343 6 RTPDVAATAAFYTEVLGFRVSDRVGD-PGVDAAAFLRCDEDHHDLALFPGP---------E-RPGLHHVAFEVESLDDIL 74 (131)
T ss_pred EcCCHHHHHHHHHhcCCCEEEEEEcc-CCceeEEEEEcCCCcceEEEEcCC---------C-CCCeeEEEEEcCCHHHHH
Confidence 45678888999999999999532221 11134567777643 34443211 0 124689999999864
Q ss_pred HHHHHHHHCCCeEEec----C-CCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~----~-~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++... + .+.+++||+|||||+|||.+.
T Consensus 75 ~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 75 RAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred HHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 7889999999998763 2 235788999999999999874
No 49
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=9.2e-15 Score=89.68 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=71.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VSK 81 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d~ 81 (120)
.-.|-+.+++||.++||+++....+ ..+++.. ++..+.+...+...+. +...++..|++|.|+| +++
T Consensus 5 ~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~ 75 (114)
T cd07261 5 YVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEPA---SDATGGGSELAFMVDDGAAVDA 75 (114)
T ss_pred EECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCCC---CCCCCCceEEEEEcCCHHHHHH
Confidence 3467788889999999999853211 1234555 3457777654322111 1112245799999985 889
Q ss_pred HHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 82 LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++++++++|+++... .+| +.++|+|||||.|||+.
T Consensus 76 ~~~~~~~~g~~v~~~~~~~~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 76 LYAEWQAKGVKIIQEPTEMDFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHCCCeEecCccccCCc-cEEEEECCCCCEEEeeC
Confidence 999999999998763 344 67899999999999973
No 50
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=3.7e-15 Score=92.91 Aligned_cols=107 Identities=15% Similarity=0.011 Sum_probs=70.0
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-CeEEEEEecCCCC---CCCCCCCCCCCcceEEEEEC---C
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPD---PLSGRPEHGGRDRHTCIAIR---D 78 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~i~l~~~~~~~---~~~~~~~~~~~~~hi~f~v~---d 78 (120)
.-+|-+.+++||.+ |||++....+. ...+++..+ +..|.|+...... .........+...|++|.|+ +
T Consensus 7 ~V~Dl~~s~~FY~~-lGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~~~~ 81 (124)
T cd09012 7 PVKDLEKSTAFYTA-LGFEFNPQFSD----EKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADSREE 81 (124)
T ss_pred ecCCHHHHHHHHHH-CCCEEccccCC----CCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCCHHH
Confidence 34678889999976 99998421111 123555555 4567776532111 00000011223469999998 5
Q ss_pred HHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEe
Q 033399 79 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++++++++++|+++..++ .+.+.+||+|||||+|||+.
T Consensus 82 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 82 VDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 8899999999999987632 33468899999999999974
No 51
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.64 E-value=5.9e-15 Score=95.73 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=71.3
Q ss_pred eccchhhhhhhhhhccCceEeccCCCC---CCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d 80 (120)
.-+|.+.+++||.++|||++....... ......+|+..++. .+.+...+ . ..+.+|+||.|+|++
T Consensus 16 ~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~---------~-~~g~~Hiaf~V~d~~ 85 (154)
T cd07237 16 ATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP---------G-PKRIHHLMLEVTSLD 85 (154)
T ss_pred EeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC---------C-CceeEEEEEEcCCHH
Confidence 456888899999999999985211110 01234567776542 34443221 1 134789999998755
Q ss_pred ---HHHHHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 81 ---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ---~~~~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++...+ .+.+++|++|||||+|||...
T Consensus 86 ~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 86 DVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred HHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 68999999999987632 356899999999999999753
No 52
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.64 E-value=6.7e-15 Score=96.62 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=69.6
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VSK 81 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d~ 81 (120)
-.|.+.+++||.++|||++.............+|+...+. ++.+..... .. .++.+|+||.|+| +++
T Consensus 14 V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-------~~-~~~~~hiaf~v~~~~~l~~ 85 (166)
T cd09014 14 ASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA-------GA-RGRLHHLAYALDTREDVLR 85 (166)
T ss_pred cCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC-------CC-CCCceEEEEECCCHHHHHH
Confidence 4577889999999999998522111111223568777543 344422111 11 1346899999986 557
Q ss_pred HHHHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++|+++|+++...+ ....++||+|||||+|||++.
T Consensus 86 ~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 86 AADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred HHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 8899999999986421 223468999999999999886
No 53
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=1.4e-14 Score=91.31 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCC--------Ccee----EEEEeC----CeEEEEEecCCCCCCCCCCCCCCC
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKL--------PYRG----AWLWVG----AEMIHLMELPNPDPLSGRPEHGGR 68 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~--------~~~~----~~l~~g----~~~i~l~~~~~~~~~~~~~~~~~~ 68 (120)
.|-+|.+.+.+||.++|||++. .+.+.+. ..++ .++..+ +..++|.......+ .. .+.
T Consensus 8 irV~DlerSi~FY~~vLG~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~~-~g~ 81 (127)
T cd08358 8 FKVGNRNKTIKFYREVLGMKVL-RHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----YE-LGN 81 (127)
T ss_pred EEeCCHHHHHHHHHHhcCCEEE-eeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----CC-CCC
Confidence 4678899999999999999984 3322111 1112 224332 23677765322111 11 122
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
.|++|.|++. ++.++|+++|+++...+.+ .+|++||||+.|||+.
T Consensus 82 -~~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 -DFLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred -CEEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 3778888777 5569999999999986654 8899999999999974
No 54
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.64 E-value=9.4e-15 Score=87.68 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=76.3
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMI 85 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~ 85 (120)
..++.+.++.||.++||+++...... .....+++..++..++|...+..... ...+...|++|.|+|+++++++
T Consensus 5 ~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~ 78 (112)
T cd06587 5 TVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDAAYER 78 (112)
T ss_pred eeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHHHHHH
Confidence 45678889999999999999533221 11234456656678888765432211 1223468999999999999999
Q ss_pred HHHCCCeEEec----CCCccEEEEeCCCCCeEEE
Q 033399 86 LDKAGISYTLS----KSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 86 l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl 115 (120)
|+++|+.+... ..+.+.+++.||+||.|||
T Consensus 79 l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 79 LKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 99999988763 3567899999999999986
No 55
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=1.1e-14 Score=93.38 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=71.3
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH---H
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV---S 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~---d 80 (120)
.+-.|-+.+.+||.++|||+++ .+.. ...+|+...+ ...+++.... ...++++|+||.|+|+ +
T Consensus 5 l~V~Dle~s~~Fy~~vLG~~~~-~~~~----~~~~~l~~~~~~~~h~~~~~~--------~~~~gl~Hiaf~v~~~~~v~ 71 (141)
T cd07258 5 IGSENFEASRDSLVEDFGFRVS-DLIE----DRIVFMRCHPNPFHHTFAVGP--------ASSSHFHHVNFMVTDIDDIG 71 (141)
T ss_pred EecCCHHHHHHHHHhcCCCEee-eeeC----CEEEEEEcCCCCCcceeeecc--------CCCCceEEEEEECCCHHHHH
Confidence 3557888999999999999985 3322 2346776543 2223332211 1124679999999865 5
Q ss_pred HHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++... ..+.+.+||+|||||.|||...
T Consensus 72 ~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 72 KALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred HHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeC
Confidence 6799999999998652 2456789999999999999753
No 56
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.64 E-value=1.8e-14 Score=90.76 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=73.3
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-C--eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH-
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-A--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS- 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~--~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d- 80 (120)
.+..|.+.+++||.++|||++.. +.+ .....|+..+ + ..+.++..+.... +...++..|++|.|+|++
T Consensus 7 l~v~D~~~s~~FY~~~lG~~~~~-~~~---~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~v~~~~~ 78 (134)
T cd08348 7 LYVRDLEAMVRFYRDVLGFTVTD-RGP---LGGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFEVDSLDD 78 (134)
T ss_pred EEecCHHHHHHHHHHhcCCEEEe-ecc---CCcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEEeCCHHH
Confidence 35678889999999999999853 222 1133566554 2 3566655432211 111234689999998765
Q ss_pred --HHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEee
Q 033399 81 --KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 --~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|.++|+++... ..+.+.+||+||+||.|||++.
T Consensus 79 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 120 (134)
T cd08348 79 LRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVD 120 (134)
T ss_pred HHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEc
Confidence 5889999999998763 2345889999999999999863
No 57
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.63 E-value=1e-14 Score=93.76 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=69.3
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHH-
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK- 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~- 83 (120)
-.|.+.+++||.++|||++. .+. ....+|+..++. .+.+...+ .++..|++|.|+|++++.
T Consensus 12 V~Dle~s~~FY~~~LG~~~~-~~~----~~~~~~l~~~~~~~~~~l~~~~-----------~~~~~hiaf~v~d~~~l~~ 75 (144)
T cd07239 12 SPDVDKTVAFYEDVLGFRVS-DWL----GDQMAFLRCNSDHHSIAIARGP-----------HPSLNHVAFEMPSIDEVMR 75 (144)
T ss_pred CCCHHHHHHHHHhcCCCEEE-Eee----CCeEEEEECCCCcceEEEccCC-----------CCceEEEEEECCCHHHHHH
Confidence 45778889999999999984 221 113467777643 34442110 124689999999888775
Q ss_pred --HHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEeeC
Q 033399 84 --MILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 84 --~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
++|+++|+++... ..+.+.+||+||+||.|||++..
T Consensus 76 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 76 GIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred HHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 8999999998653 12346789999999999998753
No 58
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.63 E-value=1e-14 Score=90.12 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=70.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE---CCHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI---RDVSKL 82 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v---~d~d~~ 82 (120)
...|.+.+++||.++|||++. .+.. ..+|+..++...+++..... . .....|++|.| ++++++
T Consensus 10 ~v~d~~~s~~FY~~~lG~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~v~~~~~l~~~ 75 (120)
T cd08362 10 GVPDLAAAAAFYREVWGLSVV-AEDD-----GIVYLRATGSEHHILRLRRS-------D-RNRLDVVSFSVASRADVDAL 75 (120)
T ss_pred ecCCHHHHHHHHHhCcCcEEE-EecC-----CEEEEECCCCccEEEEeccC-------C-CCCCceEEEEeCCHHHHHHH
Confidence 457889999999999999985 2221 24566654433333332211 0 11357999999 478999
Q ss_pred HHHHHHCCCeEEec------CCCccEEEEeCCCCCeEEEEee
Q 033399 83 KMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~------~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++|+++|+++... +++.+.++|+||+||.|||+..
T Consensus 76 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 76 ARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred HHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 99999999998652 2456789999999999999864
No 59
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.1e-14 Score=92.97 Aligned_cols=102 Identities=23% Similarity=0.379 Sum_probs=66.2
Q ss_pred hhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCC-CC-----CCCCCCCCCcceEEEEECCHHHHHHHHHH
Q 033399 15 HQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-PL-----SGRPEHGGRDRHTCIAIRDVSKLKMILDK 88 (120)
Q Consensus 15 ~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~-~~-----~~~~~~~~~~~hi~f~v~d~d~~~~~l~~ 88 (120)
.||..+||++.....|. ......+|....+..++|.-..... +. +++... .+.+||||+|+|+++++++|++
T Consensus 58 ~Fsl~fL~~~~~~~vP~-~~~~~~v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~p-rGfgHIci~V~di~sac~~lke 135 (170)
T KOG2944|consen 58 KFSLYFLGAEVSEDVPK-PEHGVSVFVFSRNAKLELTHNWGTESPPDQAYLNGNKEP-RGFGHICIEVDDINSACERLKE 135 (170)
T ss_pred hhHHHhhcccccccCcc-CCCCCceEEecccCceeeecCCCCCCCcchhhcCCCCCC-CccceEEEEeCCHHHHHHHHHH
Confidence 34445555554322222 1222336777777778885432221 11 122221 2579999999999999999999
Q ss_pred CCCeEEec-CCC--ccEEEEeCCCCCeEEEEee
Q 033399 89 AGISYTLS-KSG--RPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 89 ~Gv~~~~~-~~g--~~~~~~~DPdGn~iEl~~~ 118 (120)
+||++... ..| ...+|+.||||+.|||...
T Consensus 136 kGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 136 KGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred hCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 99998774 334 3679999999999999764
No 60
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.63 E-value=8.1e-15 Score=90.95 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=67.0
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCC--CCCCCC-CCCCCCcceEEE--EECCHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP--DPLSGR-PEHGGRDRHTCI--AIRDVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~--~~~~~~-~~~~~~~~hi~f--~v~d~d 80 (120)
.-.|-+.+++||.++|||++.. ... .-+.+..++..+.+...... ...... ........|++| .++|++
T Consensus 6 ~v~Dl~~s~~FY~~~lG~~~~~-~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv~ 79 (125)
T cd08357 6 PVRDLEAARAFYGDVLGCKEGR-SSE-----TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEFD 79 (125)
T ss_pred EeCCHHHHHHHHHHhcCCEEee-ccC-----CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHHH
Confidence 3467788889999999999942 211 11223344444444322111 100000 111123468764 568999
Q ss_pred HHHHHHHHCCCeEEec--------CCCccEEEEeCCCCCeEEEEe
Q 033399 81 KLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~--------~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++++|+++|+++... +++.+.+||+|||||.|||..
T Consensus 80 ~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 80 ALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 9999999999998752 133588999999999999975
No 61
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.62 E-value=1.3e-14 Score=94.77 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=66.4
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
.-.|.+.+++||.++|||++..............|+..++. .+.+... ...+.+|+||.|+| ++
T Consensus 10 ~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~-----------~~~~~~Hiaf~v~~~~~v~ 78 (161)
T cd07256 10 RVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG-----------NGPRLHHVAFWVPEPHNII 78 (161)
T ss_pred ecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC-----------CCCceeEEEEEcCCHHHHH
Confidence 45678899999999999998521111011222456655432 2333211 01246899999986 77
Q ss_pred HHHHHHHHCCCeEE--ecC-----CCccEEEEeCCCCCeEEEEe
Q 033399 81 KLKMILDKAGISYT--LSK-----SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~--~~~-----~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++++|+++|+... ..+ ++.+++||+|||||+|||++
T Consensus 79 ~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~ 122 (161)
T cd07256 79 RTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT 122 (161)
T ss_pred HHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence 88899999999642 211 23567999999999999985
No 62
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.62 E-value=2.2e-14 Score=88.00 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=72.3
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---CHH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---DVS 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d~d 80 (120)
..-.+.+.+++||.++|||++.. +.+ ..+|+..+ +..+.+.-...+ . .+..|++|.|+ +++
T Consensus 8 l~v~d~~~~~~FY~~~lg~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~-------~--~~~~h~~~~v~~~~~v~ 72 (117)
T cd07240 8 LEVPDLERALEFYTDVLGLTVLD-RDA-----GSVYLRCSEDDHHSLVLTEGD-------E--PGVDALGFEVASEEDLE 72 (117)
T ss_pred EecCCHHHHHHHHHhccCcEEEe-ecC-----CeEEEecCCCCcEEEEEEeCC-------C--CCceeEEEEcCCHHHHH
Confidence 34578899999999999999963 221 24677776 333333221111 1 23589999997 688
Q ss_pred HHHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|+++... +++.+.+||.||+||.||++..
T Consensus 73 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 73 ALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 9999999999998763 3456899999999999999853
No 63
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.62 E-value=1.9e-14 Score=89.27 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=67.8
Q ss_pred cchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-CeEEEEEecCCCCC-CCCCCCCCCCcceEEEEEC---CHHHH
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR---DVSKL 82 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~i~l~~~~~~~~-~~~~~~~~~~~~hi~f~v~---d~d~~ 82 (120)
.|-+.+++||. .|||++. .... ....+++..+ +..+.|........ ....+...+...|++|.|+ |++++
T Consensus 9 ~D~~~a~~FY~-~LGf~~~-~~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dvd~~ 83 (122)
T cd07235 9 ADMAKSLDFYR-RLGFDFP-EEAD---DEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPAEVDAL 83 (122)
T ss_pred ccHHHHHHHHH-HhCceec-CCcC---CCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHHHHHHH
Confidence 57788899996 5999984 2211 1123445555 45555533221110 0011111223468999875 89999
Q ss_pred HHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEE
Q 033399 83 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~ 116 (120)
+++|+++|+++... ++|.+.++|+|||||+|||+
T Consensus 84 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 84 YAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 99999999987653 46778899999999999996
No 64
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.62 E-value=2e-14 Score=89.22 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=68.4
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-e---EEEEEecCCCCCCCCCCCCCCCcceEEEEEC---
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-E---MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--- 77 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~---~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--- 77 (120)
..-.|.+.+++||.++|||++. .+.. ..+|+...+ . .+.+... + ..+.+|+||.|+
T Consensus 12 l~v~dl~~a~~FY~~~lG~~~~-~~~~-----~~~~l~~~~~~~~~~~~l~~~---------~--~~~~~h~af~v~~~~ 74 (121)
T cd09013 12 LLTPKPEESLWFFTDVLGLEET-GREG-----QSVYLRAWGDYEHHSLKLTES---------P--EAGLGHIAWRASSPE 74 (121)
T ss_pred EEeCCHHHHHHHHHhCcCCEEE-eecC-----CeEEEEeccCCCccEEEEeeC---------C--CCceEEEEEEcCCHH
Confidence 4456788889999999999995 3321 235665533 1 2333211 1 124689999997
Q ss_pred CHHHHHHHHHHCCCeEEec---CCCccEEEEeCCCCCeEEEEee
Q 033399 78 DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~---~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++++++|+++|+++... +....++||+|||||.|||+..
T Consensus 75 ~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 75 ALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred HHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 5889999999999997532 3445789999999999999863
No 65
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=2.3e-14 Score=88.39 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=72.3
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCC--CCCCCCCCCCcceEEEEE---CCHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDP--LSGRPEHGGRDRHTCIAI---RDVSK 81 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~--~~~~~~~~~~~~hi~f~v---~d~d~ 81 (120)
-.|.+.++.||.++|||++. .++. ....++..++..+++.+.+.... ............|++|.+ +|+++
T Consensus 6 v~d~~~a~~FY~~~lg~~~~-~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 80 (121)
T cd07251 6 VADLARSRAFYEALLGWKPS-ADSN----DGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEVDA 80 (121)
T ss_pred eCCHHHHHHHHHHhcCceec-ccCC----CceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHHHH
Confidence 46778899999999999994 3321 12356777777788775432110 000001111224676665 57999
Q ss_pred HHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 82 LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++++++.|+++... ++|.+.+|++||+||+|||..
T Consensus 81 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 81 VLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 999999999998753 356789999999999999975
No 66
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.60 E-value=1.1e-15 Score=94.67 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=71.5
Q ss_pred eeccchhhhhhhhhhccCceEeccCC-C-CCCCceeEEEEeCCeEEEEEecCCCCCCCCCCC-CCCCcceEEEEEC---C
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARP-H-DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIAIR---D 78 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~-~-~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~-~~~~~~hi~f~v~---d 78 (120)
.+-+|.+.+.+||+++|||+++.... . ........++..++..++|.....+.+...... ......|+++.+. |
T Consensus 7 i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d 86 (128)
T PF00903_consen 7 IRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFLAFDVDD 86 (128)
T ss_dssp EEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEEESSHHH
T ss_pred EEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEEeccHHH
Confidence 35678899999999999999974333 1 011122345566666777766433221110000 0002467777775 6
Q ss_pred HHHHHHHHHHCCCeEEec----CC-CccEEEEeCCCCCeEEE
Q 033399 79 VSKLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEF 115 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~----~~-g~~~~~~~DPdGn~iEl 115 (120)
+++++++|++.|+++... .. ....+|++||+||.|||
T Consensus 87 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 87 LDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp HHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred HHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 778999999999998773 23 34556799999999997
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=1.2e-13 Score=85.77 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=66.9
Q ss_pred ccchhhhhhhhhhc---cCceEeccCCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---
Q 033399 7 RKKREINKHQRFNL---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 78 (120)
Q Consensus 7 ~~~~~~~~~fy~~v---LG~~~~~~~~~~~~~~~~~~l~~g--~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d--- 78 (120)
-.+.+.++.||.++ |||++. .++. + ..+++..+ +..+.|.......+ +. .+...|+||.|+|
T Consensus 8 v~d~~~s~~FY~~~f~~lg~~~~-~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~----~~-~~~~~hi~f~v~~~~~ 77 (123)
T cd07262 8 VNDLERARAFYDAVLAPLGIKRV-MEDG---P-GAVGYGKGGGGPDFWVTKPFDGEP----AT-AGNGTHVAFAAPSREA 77 (123)
T ss_pred cCcHHHHHHHHHHHHhhcCceEE-eecC---C-ceeEeccCCCCceEEEeccccCCC----CC-CCCceEEEEECCCHHH
Confidence 46788899999988 799984 2221 1 12233333 34666654321111 11 1234699999986
Q ss_pred HHHHHHHHHHCCCeEEecC-------CCccEEEEeCCCCCeEEEE
Q 033399 79 VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~-------~g~~~~~~~DPdGn~iEl~ 116 (120)
+++++++++++|+.+...+ .+.+++||+|||||.|||+
T Consensus 78 v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 78 VDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 7889999999999986532 2345789999999999996
No 68
>PRK06724 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=86.43 Aligned_cols=98 Identities=18% Similarity=0.109 Sum_probs=64.9
Q ss_pred eccchhhhhhhhhhcc---CceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE---CCH
Q 033399 6 KRKKREINKHQRFNLL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI---RDV 79 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v---~d~ 79 (120)
.-.|-+.+++||.++| |++... . .. +..++..+.|...... . +. ..+..|+||.| +++
T Consensus 14 ~V~Dle~s~~FY~~vlg~lg~~~~~-~--------~~-~~~g~~~l~l~~~~~~---~--~~-~~g~~h~af~v~~~~dv 77 (128)
T PRK06724 14 WVANLEESISFYDMLFSIIGWRKLN-E--------VA-YSTGESEIYFKEVDEE---I--VR-TLGPRHICYQAINRKVV 77 (128)
T ss_pred EeCCHHHHHHHHHHHHhhCCcEEee-e--------Ee-eeCCCeeEEEecCCcc---c--cC-CCCceeEEEecCChHHH
Confidence 4567888999999865 666520 0 01 1123334444322211 0 11 12358999998 689
Q ss_pred HHHHHHHHHCCCeEEec-------CCCccEEEEeCCCCCeEEEEeeC
Q 033399 80 SKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 80 d~~~~~l~~~Gv~~~~~-------~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
|+++++|+++|+++... .+|.+++||+|||||.|||...+
T Consensus 78 d~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 78 DEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred HHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 99999999999998642 14558899999999999998654
No 69
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.55 E-value=1e-13 Score=97.84 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=69.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
.-+|.+.+++||.++|||++. .+.. ....|+.+++. .+.+...+ . .+..|++|.|+| ++
T Consensus 10 ~V~Dl~~s~~FY~~~LGl~~~-~~~~----~~~~~~~~~~~~~~~~l~~~~---------~--~~~~~~~f~V~~~~~l~ 73 (286)
T TIGR03213 10 GVSDVDAWREFATEVLGMMVA-SEGE----NDALYLRLDSRAHRIAVHPGE---------S--DDLAYAGWEVADEAGLD 73 (286)
T ss_pred EeCCHHHHHHHHHhccCcccc-cCCC----CceEEEEcCCCceEEEEEECC---------c--CCeeeEeeeeCCHHHHH
Confidence 456788899999999999984 2221 12246677643 34443221 1 135799999998 88
Q ss_pred HHHHHHHHCCCeEEec-------CCCccEEEEeCCCCCeEEEEe
Q 033399 81 KLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~-------~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++.++|+++|+++... ..+.+.++|.|||||.|||+.
T Consensus 74 ~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 74 QVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred HHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 9999999999998762 234688999999999999986
No 70
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.54 E-value=1.3e-13 Score=98.02 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=66.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCc-eeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---H
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPY-RGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---V 79 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~ 79 (120)
.-+|.+.+++||.++|||++........... ...|+..++. .+.+... +. .+..+|+||.|+| +
T Consensus 152 ~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~g~~~Hiaf~v~~~~~v 221 (303)
T TIGR03211 152 YGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGD---------PE-PGKLHHVSFFLDSWEDV 221 (303)
T ss_pred EeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecC---------CC-CCceEEEEEEcCCHHHH
Confidence 3467889999999999999852211100111 3456655432 2222111 11 2346899999996 5
Q ss_pred HHHHHHHHHCCCeEEecC-----CCccEEEEeCCCCCeEEEE
Q 033399 80 SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 80 d~~~~~l~~~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~ 116 (120)
++++++|+++|+++...+ .+.+++||+|||||+|||.
T Consensus 222 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 222 LKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred HHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 557889999999987532 1357899999999999997
No 71
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.52 E-value=3.3e-13 Score=83.51 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC-C-e--EEEEEecCCCCCCCCCCCCCCCcceEEEEEC---C
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG-A-E--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---D 78 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g-~-~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d 78 (120)
.-.|-+.+++||.++|||++. .+.+ ..+|+... + . .+.+... . ..+..|++|.|. |
T Consensus 11 ~v~d~~~~~~Fy~~~lG~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~hi~~~v~~~~d 73 (121)
T cd07266 11 RVTDLEKSREFYVDVLGLVET-EEDD-----DRIYLRGLEEFIHHSLVLTKA----------P-VAGLGHIAFRVRSEED 73 (121)
T ss_pred EcCCHHHHHHHHHhccCCEEe-ccCC-----CeEEEEecCCCceEEEEEeeC----------C-CCceeEEEEECCCHHH
Confidence 346788899999999999995 3221 23455432 2 1 2222211 0 123579999994 7
Q ss_pred HHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEee
Q 033399 79 VSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++++|+++|+++... ++..+++|+.|||||.|||+..
T Consensus 74 v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 74 LDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred HHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 899999999999998642 2335789999999999999875
No 72
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=93.53 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=77.6
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
-+.+|.+..++||+++|||++. ++. ...+.+.+++. -+.|.+.+..... .+. ..+..|+||.+++ +.
T Consensus 16 L~vrdL~~~~~FY~~ilGL~v~-~~~-----~~~v~L~vgg~~LL~L~q~~~a~~~--~~~-~aGLyH~AfLlP~r~~L~ 86 (265)
T COG2514 16 LNVRDLDSMTSFYQEILGLQVL-EET-----DGSVTLGVGGTPLLTLEQFPDARRP--PPR-AAGLYHTAFLLPTREDLA 86 (265)
T ss_pred EEeccHHHHHHHHHHhhCCeee-ecc-----CceEEEeeCCEEEEEEEeCCCCCCC--Ccc-ccceeeeeeecCCHHHHH
Confidence 3678999999999999999995 332 23466788877 4555444433211 122 2356899999985 77
Q ss_pred HHHHHHHHCCCeEEe--cCCCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~--~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
.++.++...|+.+.. ...-..++||.||+||-||++..
T Consensus 87 ~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 87 RVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred HHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEec
Confidence 888999999999974 34557899999999999999864
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.50 E-value=8.9e-13 Score=93.10 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=68.7
Q ss_pred eccchhhhhhhhhhccCceEeccC--CCC-CCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEAR--PHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~--~~~-~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d 80 (120)
+-.|.+.+++||.++|||+++... +.. ......+|+.+++. .+.+...+ . .++.+|+||+|+|++
T Consensus 149 ~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~---------~-~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 149 RVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP---------S-EKRLNHLMLEVDTLD 218 (286)
T ss_pred EcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC---------C-CCceEEEEEEcCCHH
Confidence 456778889999999999985211 110 01123567776543 23332111 1 234789999999877
Q ss_pred H---HHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEe
Q 033399 81 K---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~---~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+ ++++|+++|+..... .++.+++||+||+||+||+..
T Consensus 219 ~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 219 DVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred HHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 6 799999999933321 245678999999999999975
No 74
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.50 E-value=6.2e-13 Score=81.56 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=62.9
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CCe--EEEEEecCCCCCCCCCCCCCCCcce--EEEEECCHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRH--TCIAIRDVS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~--~i~l~~~~~~~~~~~~~~~~~~~~h--i~f~v~d~d 80 (120)
.-.|-+.+++||. +|||++. .+.+ ..++.. ++. .+.+.+.+ . ....| ++|.++|++
T Consensus 9 ~v~d~~~s~~FY~-~lG~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~d~~ 69 (112)
T cd08344 9 EVPDLEVARRFYE-AFGLDVR-EEGD------GLELRTAGNDHRWARLLEGA---------R--KRLAYLSFGIFEDDFA 69 (112)
T ss_pred ecCCHHHHHHHHH-HhCCcEE-eecC------ceEEEecCCCceEEEeecCC---------C--CceeeEEEEeEhhhHH
Confidence 4467889999996 7999995 3221 234433 322 23332111 1 11345 445568999
Q ss_pred HHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEe
Q 033399 81 KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++++|+++|+++... .++.+.+||.|||||.|||..
T Consensus 70 ~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 70 AFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred HHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEec
Confidence 9999999999998764 345678999999999999985
No 75
>PLN02300 lactoylglutathione lyase
Probab=99.48 E-value=7.4e-13 Score=93.67 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=74.2
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 82 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~----~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~ 82 (120)
..|.+.+.+||.++||+++..........+..+++..++ ..+++....... .+....+..|++|.|+|++++
T Consensus 162 ~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~----~~~~g~~~~~i~~~v~di~~~ 237 (286)
T PLN02300 162 VGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVT----EYTKGNAYAQIAIGTDDVYKT 237 (286)
T ss_pred eCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCC----ccccCCceeEEEEecCCHHHH
Confidence 467888999999999999952111111234445555432 234443311111 111123467999999999999
Q ss_pred HHHHHHCCCeEEec----CC-CccEEEEeCCCCCeEEEEeeCC
Q 033399 83 KMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~----~~-g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+++++++|+++... ++ +.+.++|+|||||.|+|++..|
T Consensus 238 ~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 238 AEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred HHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 99999999998763 22 2478899999999999998654
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.46 E-value=1.9e-12 Score=91.56 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=68.8
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-e---EEEEEecCCCCCCCCCCCCCCCcceEEEEEC---C
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-E---MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---D 78 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~---~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~---d 78 (120)
.-.|.+.++.||.++|||++.. +.. ..+|+...+ . .+.+... +. .+..|++|.|+ |
T Consensus 11 ~v~Dl~~s~~FY~~vLGl~~~~-~~~-----~~~~~~~~~~~~~~~l~l~~~---------~~--~~~~hiaf~v~~~~d 73 (294)
T TIGR02295 11 RVTDLDKSREFYVDLLGFRETE-SDK-----EYIYLRGIEEFQHHSLVLTKA---------PS--AALSYIGFRVSKEED 73 (294)
T ss_pred EeCCHHHHHHHHHHccCCEEEE-ecC-----CeEEEeccCcCCceEEEeeeC---------CC--cCccEEEEEeCCHHH
Confidence 4568889999999999999852 211 235554321 1 2222211 11 23589999997 7
Q ss_pred HHHHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEee
Q 033399 79 VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++++|+++|+++... +.+.+++||+|||||.|||++.
T Consensus 74 l~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 74 LDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred HHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 899999999999998763 3446899999999999999863
No 77
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.44 E-value=1.7e-12 Score=91.82 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=65.2
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VS 80 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d 80 (120)
.-.|-+.+++||.++|||++..............|+..++. .+.+. . ....+.+|+||.|+| ++
T Consensus 143 ~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~Hiaf~v~d~~~v~ 211 (294)
T TIGR02295 143 FVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALT--N---------GNGPRLHHIAYWVHDPLNII 211 (294)
T ss_pred EeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEee--c---------CCCCceeeEEEEcCCHHHHH
Confidence 34677888999999999998522111111122345544322 22221 1 011347899999998 55
Q ss_pred HHHHHHHHCCCe--EEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 81 KLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 81 ~~~~~l~~~Gv~--~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+++++|+++|++ +...+ .+..++|++||+||+|||+..
T Consensus 212 ~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 212 KACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred HHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 568999999997 43321 124579999999999999763
No 78
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.43 E-value=2e-12 Score=91.88 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CC---eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--- 77 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~---~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--- 77 (120)
..-.|.+.+++||.++|||++. .+.. ..+++.. ++ ..+.+... + ..+..|+||.|+
T Consensus 10 l~V~Dle~s~~FY~~~LG~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~---------~--~~g~~hiaf~v~~~~ 72 (303)
T TIGR03211 10 LRVLDLEESLKHYTDVLGLEET-GRDG-----QRVYLKAWDEWDHYSVILTEA---------D--TAGLDHMAFKVESEA 72 (303)
T ss_pred EEeCCHHHHHHHHHHhcCCEEe-eecC-----ceEEEEeccccccceEeeccC---------C--CCceeEEEEEeCCHH
Confidence 3457888999999999999995 3322 1344443 21 23333211 0 123689999998
Q ss_pred CHHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEee
Q 033399 78 DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
|+++++++|+++|+++... ....+.+||+|||||.|||.+.
T Consensus 73 dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 73 DLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred HHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 7899999999999998652 2235789999999999999874
No 79
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.36 E-value=2.5e-12 Score=78.80 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=65.3
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHH
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 82 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~ 82 (120)
+.-+|.+.+.+||.++||++..........+...+++..++ ..|+|++........ ....++++||||.|+|++++
T Consensus 5 i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~--~~~~~gi~Hia~~v~D~d~~ 82 (109)
T PF13669_consen 5 IVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL--DRGGGGIHHIAFEVDDLDAA 82 (109)
T ss_dssp EEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH--HHTSSEEEEEEEEESHHHHH
T ss_pred EEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc--ccCCCCEEEEEEEeCCHHHH
Confidence 34568899999999999998853222223456778888887 489999865432100 01345689999999999999
Q ss_pred HHHHHHCCCeEEe
Q 033399 83 KMILDKAGISYTL 95 (120)
Q Consensus 83 ~~~l~~~Gv~~~~ 95 (120)
.++|+++|+++..
T Consensus 83 ~~~l~~~G~~~~~ 95 (109)
T PF13669_consen 83 IARLEAQGFRVLD 95 (109)
T ss_dssp HHHHHHTTECEEE
T ss_pred HHHHHHCCCEEcc
Confidence 9999999999876
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.27 E-value=7.2e-11 Score=71.97 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=68.8
Q ss_pred eeeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeC--CeEEEEEecCCCCC-CCCC-CCCCCCcceEE--EEEC
Q 033399 4 KYKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDP-LSGR-PEHGGRDRHTC--IAIR 77 (120)
Q Consensus 4 ~~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g--~~~i~l~~~~~~~~-~~~~-~~~~~~~~hi~--f~v~ 77 (120)
++--.|.+.++.||.++||++.- |. ...|+.+. +.++..-..+.++. ..+. ....-...|++ |.++
T Consensus 9 A~pV~Dl~~tr~FYgevlG~~~G--Rs------td~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~e 80 (138)
T COG3565 9 AIPVNDLDETRRFYGEVLGCKEG--RS------TDTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPVE 80 (138)
T ss_pred eeeccccHHHHhhhhhhcccccc--cc------cceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEHH
Confidence 45567889999999999999993 21 22565553 44332222222211 1111 11111235766 5667
Q ss_pred CHHHHHHHHHHCCCeEEec--------CCCccEEEEeCCCCCeEEEEe
Q 033399 78 DVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~--------~~g~~~~~~~DPdGn~iEl~~ 117 (120)
|.-++.++|+++|+.+..+ +...+.+|+.||.||.+|+..
T Consensus 81 dW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 81 DWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred HHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 8999999999999988652 344789999999999999864
No 81
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.25 E-value=3.8e-10 Score=70.89 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=72.3
Q ss_pred eeccchhhhhhhhhhccCceEeccCCCCC----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEE
Q 033399 5 YKRKKREINKHQRFNLLGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 74 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f 74 (120)
+=.++.+...+||.++||+++....+... .....+-+.+++..|.+.......+. . .+...++++
T Consensus 6 ~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~----~-~~~~~~l~i 80 (128)
T cd06588 6 WFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF----T-FGNGISLSV 80 (128)
T ss_pred eeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC----C-CCCCEEEEE
Confidence 34578899999999999999974322100 11123457778888877653321110 1 122358999
Q ss_pred EECC---HHHHHHHHHHCCCeEEe----cCCCccEEEEeCCCCCeEEEE
Q 033399 75 AIRD---VSKLKMILDKAGISYTL----SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 75 ~v~d---~d~~~~~l~~~Gv~~~~----~~~g~~~~~~~DPdGn~iEl~ 116 (120)
.|+| +++++++|++.| ++.. .++|.+...|+||+|+.|+|.
T Consensus 81 ~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 81 ECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred ECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 9986 778889998877 5544 358888999999999999973
No 82
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=6.7e-08 Score=61.44 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=75.7
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCC----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 76 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v 76 (120)
+++.....+||.++||+++....+.++ ...-.+-|.+++..|.+.......+ ....++...-|-+.+
T Consensus 9 ~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~l~~~~ 85 (136)
T COG2764 9 NGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLSLDLYV 85 (136)
T ss_pred CCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEEEEEEe
Confidence 457788899999999999964333322 1223345777887777754221111 111112234677788
Q ss_pred CCHHHHHHHHHHCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 77 RDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+|++++++++.+.|++++.+ .||.+.-.++||.|+.+-|...
T Consensus 86 ~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~ 131 (136)
T COG2764 86 EDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTP 131 (136)
T ss_pred hHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecC
Confidence 89999999999999888773 6899999999999999998764
No 83
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.95 E-value=5e-08 Score=61.21 Aligned_cols=105 Identities=14% Similarity=0.004 Sum_probs=68.4
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMI 85 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~ 85 (120)
..|-+..++||..|+|.+.. ...+. .......+..++ ...-.+..... ..+. +..-++-|.|+|++++++|
T Consensus 17 ~~D~~ra~~FY~~vFgW~~~-~~~~~-~~~~y~~f~~~~~~~gG~l~~~~~----~~p~--~~~~~iy~~v~did~~l~r 88 (127)
T COG3324 17 VSDLERAKAFYEKVFGWTFE-DYFDM-GEMRYAVFPADGAGAGGGLMARPG----SPPG--GGGWVIYFAVDDIDATLER 88 (127)
T ss_pred cCCHHHHHHHHHHhhCceec-ccccC-CCceEEEEECCCccccceeccCCc----CCCC--CCCEEEEEecCChHHHHHH
Confidence 57889999999999999995 22110 112222232222 11111111100 0111 2235788999999999999
Q ss_pred HHHCCCeEEec----CCCccEEEEeCCCCCeEEEEeeC
Q 033399 86 LDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 86 l~~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
.+++|-+++.+ +.+.+.+.+.||+||+|-|.+..
T Consensus 89 v~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 89 VVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 99999999874 33667888999999999998865
No 84
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.89 E-value=8.3e-09 Score=69.25 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=56.3
Q ss_pred cchhhhhhhhhhccCceEeccCCCCC--CCceeEEEEeCC--eEEEEEecCCC-CCCC-C---CCCCCCCcceEEEEECC
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDK--LPYRGAWLWVGA--EMIHLMELPNP-DPLS-G---RPEHGGRDRHTCIAIRD 78 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~--~~~~~~~l~~g~--~~i~l~~~~~~-~~~~-~---~~~~~~~~~hi~f~v~d 78 (120)
.+.+.+.+||.++|||+......... .+.....+..++ ..+.|.+...+ .... . ....+.+.+||||.|+|
T Consensus 14 ~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~Gv~HIAf~vdD 93 (191)
T cd07250 14 GEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGAGVQHIALATDD 93 (191)
T ss_pred hHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCCceeEEEEECCC
Confidence 47788899999999999853221111 122333455433 46777654321 1100 0 00113467899999999
Q ss_pred HHHHHHHHHHCCCeEEe
Q 033399 79 VSKLKMILDKAGISYTL 95 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~ 95 (120)
+++++++|+++|+++..
T Consensus 94 I~~~~~~L~~~Gv~~l~ 110 (191)
T cd07250 94 IFATVAALRARGVEFLP 110 (191)
T ss_pred HHHHHHHHHHcCCeecc
Confidence 99999999999999965
No 85
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.5e-08 Score=69.24 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=72.2
Q ss_pred ceeeccchhhhhhhhhhccCceEeccCC--C-------CC--CCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCC
Q 033399 3 YKYKRKKREINKHQRFNLLGLEINEARP--H-------DK--LPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGG 67 (120)
Q Consensus 3 ~~~~~~~~~~~~~fy~~vLG~~~~~~~~--~-------~~--~~~~~~~l~~g~~----~i~l~~~~~~~~~~~~~~~~~ 67 (120)
|-||-++++.+..||+++|||++..++. + ++ ..+..+++..|+. .++|.-.-.- ....-+.
T Consensus 21 ~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV----~~YelGn 96 (299)
T KOG2943|consen 21 YVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGV----SKYELGN 96 (299)
T ss_pred EeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCc----cceeccC
Confidence 6789999999999999999999964321 1 11 1223344666653 3555321111 1122234
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
.+.||.+.++|+-...+.++..|- ...|...+++.||||+.++|.+
T Consensus 97 dfg~i~I~s~dv~~~ve~v~~p~~----~~~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 97 DFGGITIASDDVFSKVEKVNAPGG----KGSGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred CcccEEEeHHHHHHHHHHhcCcCC----cccceEEEEEECCCCcEEEEec
Confidence 578999999998888887766554 3345667889999999999986
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.77 E-value=1.1e-07 Score=69.23 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=55.2
Q ss_pred cchhhhhhhhhhccCceEeccCCC--CC-CCceeEEEEe--CCeEEEEEecCCCC-CCC-C---CCCCCCCcceEEEEEC
Q 033399 8 KKREINKHQRFNLLGLEINEARPH--DK-LPYRGAWLWV--GAEMIHLMELPNPD-PLS-G---RPEHGGRDRHTCIAIR 77 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~--~~-~~~~~~~l~~--g~~~i~l~~~~~~~-~~~-~---~~~~~~~~~hi~f~v~ 77 (120)
.+.+.+..||.++|||++.. +.+ .. ......++.. ++..|+|.+..... ... . ....+.+++||||.|+
T Consensus 169 ~dl~~~~~fY~~~lGf~~~~-~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~~~g~Gv~HiAf~vd 247 (353)
T TIGR01263 169 GQMEPWAEFYEKIFGFREIR-SFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEFYNGAGVQHIALNTD 247 (353)
T ss_pred ccHHHHHHHHHHHhCCceee-EEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHHcCCCCccEEEEEcC
Confidence 47889999999999999852 211 00 1111223333 33577776532111 110 0 0111346789999999
Q ss_pred CHHHHHHHHHHCCCeEEe
Q 033399 78 DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~ 95 (120)
|+++++++|+++|+++..
T Consensus 248 Di~~~~~~l~~~Gv~~l~ 265 (353)
T TIGR01263 248 DIVRTVRALRARGVEFLD 265 (353)
T ss_pred CHHHHHHHHHHcCCccCc
Confidence 999999999999999875
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.75 E-value=1.3e-07 Score=68.88 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=58.3
Q ss_pred ccchhhhhhhhhhccCceEecc-CCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCcceEEEEECCHHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEA-RPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~-~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~--~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
-.|.+.+.+||++.|||+.... ... .......+..|+..+.|.....+..... ...++.+..|+||.|+|+++++
T Consensus 10 V~D~~~a~~~y~~~LGf~~~~~~~~~--~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~Dv~~a~ 87 (353)
T TIGR01263 10 VGDAKQAAYYYFTRFGFEKVAKETGH--REKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVDDAAAAF 87 (353)
T ss_pred eCCHHHHHHHHHHhcCCcEEEEeecC--CceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEECCHHHHH
Confidence 4567788999999999999632 111 1112233555777888875433221000 0122345789999999999999
Q ss_pred HHHHHCCCeEEec
Q 033399 84 MILDKAGISYTLS 96 (120)
Q Consensus 84 ~~l~~~Gv~~~~~ 96 (120)
++++++|+++...
T Consensus 88 ~~l~~~Ga~~v~~ 100 (353)
T TIGR01263 88 EAAVERGAEPVQA 100 (353)
T ss_pred HHHHHCCCEeccC
Confidence 9999999998653
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.60 E-value=1.1e-07 Score=58.14 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=37.7
Q ss_pred cceEEEEECC---HHHHHHHHHHCCCeEEecCC--CccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRD---VSKLKMILDKAGISYTLSKS--GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d---~d~~~~~l~~~Gv~~~~~~~--g~~~~~~~DPdGn~iEl~~ 117 (120)
..|++|.+++ ...........|..+..... ....+||+||||++|||.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 85 LGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred cCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 5799999998 66777777788888755321 1128999999999999974
No 89
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.59 E-value=1.1e-06 Score=54.59 Aligned_cols=107 Identities=18% Similarity=0.115 Sum_probs=65.5
Q ss_pred cchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCC---CCCCCCcceEEEEECC---HHH
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR---PEHGGRDRHTCIAIRD---VSK 81 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~---~~~~~~~~hi~f~v~d---~d~ 81 (120)
+|.+.+++|| ..|||+.. ..+. .......+..++..+.|++......-..+ ....++-.-+|+.+.+ +|+
T Consensus 12 kDL~~S~~Fy-~alGfk~N-pq~s--de~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s~eevd~ 87 (133)
T COG3607 12 KDLEASKAFY-TALGFKFN-PQFS--DEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGSREEVDE 87 (133)
T ss_pred hhHHHHHHHH-HHhCcccC-CCcc--cccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCcHHHHHH
Confidence 4667777887 67999994 2222 11122234445666667653221100000 1112233578999874 888
Q ss_pred HHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+.++..+.|.+...++ ......-|.|||||.+|+.-.
T Consensus 88 ~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 88 LVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred HHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEe
Confidence 8999999999886542 335666789999999999753
No 90
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.45 E-value=1.2e-05 Score=49.69 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=54.6
Q ss_pred eeeccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 033399 4 KYKRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 81 (120)
Q Consensus 4 ~~~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~--~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~ 81 (120)
..|-.+++.+.+||.++|||++..+. + ..+++.... ..+-|-+.|... +..-.......++-+.|++..+
T Consensus 5 vlRVnnR~~ni~FY~~~LGfkll~EE-n-----a~a~lg~~~~~erlvlEESP~~r--tr~V~G~KKl~~ivIkv~~~~E 76 (125)
T PF14506_consen 5 VLRVNNRDLNIDFYQKTLGFKLLSEE-N-----ALAILGDQQKEERLVLEESPSMR--TRAVEGPKKLNRIVIKVPNPKE 76 (125)
T ss_dssp EEEESSHHHHHHHHTTTT--EEEEEE-T-----TEEEEE-TT--EEEEEEE--TTT---B--SSS-SEEEEEEEESSHHH
T ss_pred eEEEcCHHHhHHHHHhccCcEEeecc-c-----cEEEecCCCCceEEEEecCCccc--cccccCcceeeEEEEEcCCHHH
Confidence 35778999999999999999996321 1 234444432 234443333321 1011111235789999987665
Q ss_pred HHHHHHHCCCeEEe--cCCCccEEEEeCCCCCeEEEEee
Q 033399 82 LKMILDKAGISYTL--SKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~--~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+-+-| ++|..+.. ......++-..+|+|+.+.|...
T Consensus 77 Ie~LL-ar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 77 IEALL-ARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HHHHH-HC-S--SEEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HHHHH-hcccccceeEEcCCceEEEEECCCCCEEEEEEc
Confidence 54443 44554433 23345667788999999999764
No 91
>PRK10148 hypothetical protein; Provisional
Probab=98.34 E-value=4.9e-05 Score=49.05 Aligned_cols=110 Identities=13% Similarity=-0.041 Sum_probs=71.2
Q ss_pred ceeeccchhhhhhhhhhccCceEecc-----CCCC---------------CCCceeEEEEeCCeEEEEEecCCCCCCCCC
Q 033399 3 YKYKRKKREINKHQRFNLLGLEINEA-----RPHD---------------KLPYRGAWLWVGAEMIHLMELPNPDPLSGR 62 (120)
Q Consensus 3 ~~~~~~~~~~~~~fy~~vLG~~~~~~-----~~~~---------------~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~ 62 (120)
|=+=.++......||.++||.++... .|.. ....-.+-|.+++..|.+...... .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~-~---- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPS-G---- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCC-c----
Confidence 33445678889999999999998521 1110 011224557778877666432111 0
Q ss_pred CCCCCCcceEEEEECCHHH---HHHHHHHCCCeEEe----cCCCccEEEEeCCCCCeEEEEeeC
Q 033399 63 PEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTL----SKSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 63 ~~~~~~~~hi~f~v~d~d~---~~~~l~~~Gv~~~~----~~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
+... ...++++.++|.++ +++.| +.|.++.. ..||.+...|+||.|+.|.|...+
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEecC
Confidence 1111 23588888888776 56777 57777765 368888899999999999997643
No 92
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.17 E-value=1.4e-05 Score=59.12 Aligned_cols=87 Identities=9% Similarity=-0.025 Sum_probs=55.5
Q ss_pred chhhhhhhhhhccCceEecc--CCCC---CCCceeEEEEeCC--eEEEEEecCCC--CCCC-C---CCCCCCCcceEEEE
Q 033399 9 KREINKHQRFNLLGLEINEA--RPHD---KLPYRGAWLWVGA--EMIHLMELPNP--DPLS-G---RPEHGGRDRHTCIA 75 (120)
Q Consensus 9 ~~~~~~~fy~~vLG~~~~~~--~~~~---~~~~~~~~l~~g~--~~i~l~~~~~~--~~~~-~---~~~~~~~~~hi~f~ 75 (120)
+-+....||.++|||+.... .++- ..+..+..+..++ ..|.|.+.... .... . ....+.+++||||.
T Consensus 190 ~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~ 269 (398)
T PLN02875 190 NLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALK 269 (398)
T ss_pred hHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEee
Confidence 45667889999999988521 1110 0123445566654 46777664321 1100 0 01123578999999
Q ss_pred ECCHHHHHHHHHHC----CCeEEe
Q 033399 76 IRDVSKLKMILDKA----GISYTL 95 (120)
Q Consensus 76 v~d~d~~~~~l~~~----Gv~~~~ 95 (120)
|+|+.++.++|+++ |+++..
T Consensus 270 tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 270 SDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred cCCHHHHHHHHHhccccCCeecCC
Confidence 99999999999999 999865
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=97.93 E-value=7.7e-05 Score=54.11 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=58.7
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---HHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD---VSKLK 83 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d---~d~~~ 83 (120)
-+|.+.+++||..+|||.. .... .+. ..++..+.++... .+ +. ...-.-+|+.+++ +|+++
T Consensus 255 V~DL~rS~~FYt~LF~~n~-Fsde-------~a~-cm~dtI~vMllt~-~D-----~~-~~~evLl~Ls~~Sre~VD~lv 318 (357)
T PRK01037 255 VQDLRRAKKFYSKMFGLEC-WDGD-------KLF-LLGKTSLYLQQTK-AE-----KK-NRGTTTLSLELECEHDFVRFL 318 (357)
T ss_pred eCCHHHHHHHHHHHhCCCC-CCCC-------ccc-cccCcEEEEEecC-CC-----CC-CcceEEEEeccCCHHHHHHHH
Confidence 4678889999999988876 3221 111 2244433332221 11 11 1223579999985 77888
Q ss_pred HHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEEe
Q 033399 84 MILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 84 ~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~~ 117 (120)
++..++|...... ..|. .--|.||||+++|+.-
T Consensus 319 ~~A~aaGG~~~~~~~D~Gf-~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 319 RRWEMLGGELGEQADGHFP-LRLVFDLDGHIWVVSC 353 (357)
T ss_pred HHHHHcCCCCCCCcccccC-cceeECCCCCEEEEEE
Confidence 8999999866442 2343 3346899999999964
No 94
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.75 E-value=0.00015 Score=44.08 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=40.4
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEe----cCCCccEEEEeCCCC-CeEEEEeeC
Q 033399 70 RHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDA-NALEFTQVD 119 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~-~Gv~~~~----~~~g~~~~~~~DPdG-n~iEl~~~~ 119 (120)
+|++|.|+|++++.+.+.+ .|+.... +..+.+..++.-++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 9987654 245567777888888 689999864
No 95
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.72 E-value=7.6e-05 Score=49.22 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=47.1
Q ss_pred cchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCC--CCCC------CCCCCcceEEEEECCH
Q 033399 8 KKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--SGRP------EHGGRDRHTCIAIRDV 79 (120)
Q Consensus 8 ~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~--~~~~------~~~~~~~hi~f~v~d~ 79 (120)
.+.+...++|.+.|||++.........+..++.+.+++.-|||+......+. ..+. ....+..++||.++|+
T Consensus 9 ~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~t~d~ 88 (175)
T PF13468_consen 9 RDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYGWALRTDDI 88 (175)
T ss_dssp TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEEEEEE-S-H
T ss_pred CCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEEEEEecCCH
Confidence 4677778888899999997432222346677788888779999885322111 1110 1234568999999999
Q ss_pred HHHHHHHHHCCCe
Q 033399 80 SKLKMILDKAGIS 92 (120)
Q Consensus 80 d~~~~~l~~~Gv~ 92 (120)
++..++|++.|+.
T Consensus 89 ~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 89 EAVAARLRAAGLD 101 (175)
T ss_dssp HHHHHHHHTTT-E
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999986
No 96
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.55 E-value=0.00057 Score=47.83 Aligned_cols=89 Identities=21% Similarity=0.126 Sum_probs=55.1
Q ss_pred eccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCC-CCCCCCCCCcceEEEEECCHHHHHH
Q 033399 6 KRKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRDVSKLKM 84 (120)
Q Consensus 6 ~~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~-~~~~~~~~~~~hi~f~v~d~d~~~~ 84 (120)
|-++.+..+.||.++|||+++ .+.. ...|+..|+..-|+......... ..++....+...+.+.+++-.....
T Consensus 175 ~v~~l~eA~~fY~~~LG~~~~-~~~~-----~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~~~~~~l~~ 248 (265)
T COG2514 175 KVADLEEAEQFYEDVLGLEVT-ARGP-----SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHTPDPEKLDA 248 (265)
T ss_pred EeCCHHHHHHHHHHhcCCeee-ecCC-----cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEcCCcccccc
Confidence 456788899999999999996 3321 24688889887666543333221 1112223456788888886333221
Q ss_pred HHHHCCCeEEecCCCccEEEEeCCCCCeEEEE
Q 033399 85 ILDKAGISYTLSKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 85 ~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~ 116 (120)
..... .||.|+.|.+.
T Consensus 249 ~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 249 TGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred cccce----------------ecCCCceEEEe
Confidence 11111 89999999875
No 97
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00034 Score=48.34 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=64.3
Q ss_pred ccchhhhhhhhhhccCceEeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEE--CCHHHH
Q 033399 7 RKKREINKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAI--RDVSKL 82 (120)
Q Consensus 7 ~~~~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v--~d~d~~ 82 (120)
-.|.+.++.||.+.|||++. +.. .....+.+..++. .++|...... ..+ ..++..++|.+ +++..+
T Consensus 157 VgdL~ks~kyw~~~lgM~il-eke---ek~t~~~mgYgd~q~~LElt~~~~~---id~---~kg~griafaip~d~~~~l 226 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKIL-EKE---EKYTRARMGYGDEQCVLELTYNYDV---IDR---AKGFGRIAFAIPTDDLPKL 226 (299)
T ss_pred ehhHHHHHHHHHHHhCcchh-hhh---hhhhhhhhccCCcceEEEEEeccCc---ccc---cccceeEEEeccccccccH
Confidence 45677788899999999995 321 2334455666654 4555433211 111 12345677766 478888
Q ss_pred HHHHHHCCCeEEe------cCC--CccEEEEeCCCCCeEEEEeeC
Q 033399 83 KMILDKAGISYTL------SKS--GRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 83 ~~~l~~~Gv~~~~------~~~--g~~~~~~~DPdGn~iEl~~~~ 119 (120)
.+.++..+-++.. .+. +...+-+-||||+.|-|+...
T Consensus 227 ~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 227 QEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred HHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 8888888665533 232 245666789999999887643
No 98
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.41 E-value=0.00043 Score=50.14 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=49.8
Q ss_pred hhhhhhhhhhccCceEecc--CCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCC---CCCCCCCcceEEEEECCHHHH
Q 033399 10 REINKHQRFNLLGLEINEA--RPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSG---RPEHGGRDRHTCIAIRDVSKL 82 (120)
Q Consensus 10 ~~~~~~fy~~vLG~~~~~~--~~~~~~~~~~~~l~~g~~--~i~l~~~~~~~~~~~---~~~~~~~~~hi~f~v~d~d~~ 82 (120)
-+.-..||+.+|||+.... -+.......+--+...+. +|-|-+..+.....+ +...+.+++||||.++|+-++
T Consensus 180 md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~~T~dI~~t 259 (363)
T COG3185 180 MDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAFGTDDIYAT 259 (363)
T ss_pred HHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEecccHHHHH
Confidence 3455679999999998521 111001112222333333 333322221111000 112345789999999999999
Q ss_pred HHHHHHCCCeEEe
Q 033399 83 KMILDKAGISYTL 95 (120)
Q Consensus 83 ~~~l~~~Gv~~~~ 95 (120)
.++|+++|+++..
T Consensus 260 v~~lr~rG~~fl~ 272 (363)
T COG3185 260 VAALRERGVKFLP 272 (363)
T ss_pred HHHHHHcCCccCC
Confidence 9999999999855
No 99
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.34 E-value=0.0022 Score=41.06 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=56.9
Q ss_pred hhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHHHHCCC
Q 033399 12 INKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGI 91 (120)
Q Consensus 12 ~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l~~~Gv 91 (120)
.....|+..|||+......+ .....++-|+..+-|-..+......-...++.+..-++|+|+|.++++++..++|.
T Consensus 21 ~~l~~~~~~lGF~~~a~hrs----k~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~Da~~A~~rA~~~GA 96 (139)
T PF14696_consen 21 QALAQLFTALGFQPVARHRS----KDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVDDAAAAYERAVALGA 96 (139)
T ss_dssp TSCHHHHCCCCEEEECCECC----CSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCcceEEecCC----cceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeCCHHHHHHHHHHcCC
Confidence 34445668899999632222 12223344555555533221100000012234567899999999999999999999
Q ss_pred eEEecC---CCccEEEEeCCCCCeEEEEee
Q 033399 92 SYTLSK---SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 92 ~~~~~~---~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+....+ .....--++-++|.++-|++.
T Consensus 97 ~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 97 EPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp -EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred cCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 986642 224455577888888888775
No 100
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=96.98 E-value=0.022 Score=42.50 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=65.3
Q ss_pred eeccchhhhhhhhhhccCceEecc-CCCCCC-CceeEEEEeCCeEEEEEecCCCC--C-----CC--CCC----------
Q 033399 5 YKRKKREINKHQRFNLLGLEINEA-RPHDKL-PYRGAWLWVGAEMIHLMELPNPD--P-----LS--GRP---------- 63 (120)
Q Consensus 5 ~~~~~~~~~~~fy~~vLG~~~~~~-~~~~~~-~~~~~~l~~g~~~i~l~~~~~~~--~-----~~--~~~---------- 63 (120)
|--.++...+.+|...|||+.... .+.... ......+.-|+..+-|.....+. . .. ..+
T Consensus 6 f~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (398)
T PLN02875 6 FWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSDAARRF 85 (398)
T ss_pred EEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcHHHHHH
Confidence 345677788889989999999632 211111 11122233344444443321110 0 00 000
Q ss_pred --CCCCCcceEEEEECCHHHHHHHHHHCCCeEEecCC--------C-ccEEEEeCCCCCeEEEEee
Q 033399 64 --EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS--------G-RPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 64 --~~~~~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~~--------g-~~~~~~~DPdGn~iEl~~~ 118 (120)
.++.++.-+||+|+|+++++++..++|++....+. | ....-+.-++|.++-|++.
T Consensus 86 ~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 86 FAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 12234567999999999999999999998866321 1 2334466777777777664
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0048 Score=44.38 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=49.5
Q ss_pred chhhhhhhhhhccCceEeccCC-C-CCCCceeEEEEeCCeEEEEEecCCCCC--CC-CCCCCCCCcceEEEEECCHHHHH
Q 033399 9 KREINKHQRFNLLGLEINEARP-H-DKLPYRGAWLWVGAEMIHLMELPNPDP--LS-GRPEHGGRDRHTCIAIRDVSKLK 83 (120)
Q Consensus 9 ~~~~~~~fy~~vLG~~~~~~~~-~-~~~~~~~~~l~~g~~~i~l~~~~~~~~--~~-~~~~~~~~~~hi~f~v~d~d~~~ 83 (120)
.+-..+.||+..|||+....+- + +.......-+.-|....-+...-+++. .. ..+.++-+..-+||+|+|.+++.
T Consensus 27 na~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~HgdgvkdvafeVeD~da~~ 106 (381)
T KOG0638|consen 27 NAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDVAFEVEDADAIF 106 (381)
T ss_pred CcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhceEEEecchHHHH
Confidence 4456678999999999963221 0 000000011222332222222222211 11 11233334678999999999999
Q ss_pred HHHHHCCCeEEec
Q 033399 84 MILDKAGISYTLS 96 (120)
Q Consensus 84 ~~l~~~Gv~~~~~ 96 (120)
+.++++|+.+..+
T Consensus 107 ~~~va~Ga~v~~~ 119 (381)
T KOG0638|consen 107 QEAVANGAKVVRP 119 (381)
T ss_pred HHHHHcCCcccCC
Confidence 9999999998664
No 102
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=96.43 E-value=0.023 Score=35.59 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=37.2
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEecC---------------CCccEEEEeCCCC-CeEEEEee
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTLSK---------------SGRPAIFTRDPDA-NALEFTQV 118 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~---------------~g~~~~~~~DPdG-n~iEl~~~ 118 (120)
.++|+++.|.|++++.+...+.|.++.... .+.+..++..|+| ..|||.+.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 368999999999999999888998764321 1124456666665 57898874
No 103
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.69 E-value=0.085 Score=34.24 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=38.0
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec-----C----------------C-CccEEEEeCCCCCeEEEEeeC
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----K----------------S-GRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~-----~----------------~-g~~~~~~~DPdGn~iEl~~~~ 119 (120)
++.|+++.|.|+++..+-.++ .|.++... . + ..+.+++.-++|..||+.+..
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 368999999999999998866 79876421 0 0 134556666778889999864
No 104
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.20 E-value=0.24 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=35.4
Q ss_pred CcceEEEEECCHHHHHHHHH-HCCCeEEec---CC-CccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILD-KAGISYTLS---KS-GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~-~~Gv~~~~~---~~-g~~~~~~~DPdGn~iEl~~ 117 (120)
+.+|+++.|.|++++.+..+ ..|.++... .. ....+.+..+++..||+.+
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 36899999999999999887 489988653 11 1222334556677888764
No 105
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.16 E-value=0.41 Score=29.55 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=60.8
Q ss_pred ceeeccchhhhhhhhhhccCc-eEec--cCCCCC----CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 033399 3 YKYKRKKREINKHQRFNLLGL-EINE--ARPHDK----LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 75 (120)
Q Consensus 3 ~~~~~~~~~~~~~fy~~vLG~-~~~~--~~~~~~----~~~~~~~l~~g~~~i~l~~~~~~~~~~~~~~~~~~~~hi~f~ 75 (120)
|=|=.+..+....||.++||- ++.. .-|+.. ...-.+.+.+++..+........ .+. +....+++.
T Consensus 6 yL~F~g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~-----~~~--~~~~sl~i~ 78 (116)
T PF06983_consen 6 YLWFNGNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPD-----FPF--GNNISLCIE 78 (116)
T ss_dssp EEEESS-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-----------TTEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCC-----CCC--CCcEEEEEE
Confidence 334457788889999999994 3321 122211 12234567888888777654311 011 123588899
Q ss_pred ECCH---HHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEE
Q 033399 76 IRDV---SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 76 v~d~---d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~ 116 (120)
++|. +.++++|.+.|- .++ ..-.+.|.-|..+.|+
T Consensus 79 ~~~~ee~~~~f~~Ls~gG~-----~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 79 CDDEEEIDRIFDKLSEGGQ-----WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp ESSHHHHHHHHHHHHTTTE-----TCC-EEEEEE-TTS-EEEEE
T ss_pred cCCHHHHHHHHHHHHcCCC-----ccc-eeEEEEeCCCCEEEeC
Confidence 9874 456788877776 334 7778999999999875
No 106
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=95.07 E-value=0.12 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHCCCeEEe---cCCCccEEEEeCCCCCeEEEEe
Q 033399 78 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~---~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+.+++.+.|++.|+++.. ...+...+...|+||+.+|+.-
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 799999999999998766 2456788889999999999964
No 107
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.89 E-value=0.21 Score=32.27 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=34.5
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeC-CCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~D-PdGn~iEl~~~ 118 (120)
++|+++.|.|+++..+-..+ .|.++.....+...++..+ .++..|+|.+.
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 58999999999999998865 5888765433322222222 35788888764
No 108
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.85 E-value=0.056 Score=35.50 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=27.4
Q ss_pred cceEEEEECCHHHHHHHH-HHCCCeEEec----CCCc--cEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMIL-DKAGISYTLS----KSGR--PAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l-~~~Gv~~~~~----~~g~--~~~~~~DPdGn~iEl~~~ 118 (120)
+.|+.+.|+|++++.+++ +..|..+... .+|. ..++| +++ .|||+..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i 54 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAI 54 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEe
Confidence 369999999999999999 8889998762 2343 44554 677 9999874
No 109
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=94.61 E-value=0.2 Score=29.23 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.1
Q ss_pred cceEEEEECCHHHHHHHHH-HCCCeEEecCC-CccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILD-KAGISYTLSKS-GRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~-~~Gv~~~~~~~-g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++.|+|++++.+... -.|.+...... .....++..+++..++|.+.
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 3799999999999998875 77877654322 12334555555557787754
No 110
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.41 E-value=0.43 Score=28.63 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++.|+|+++..+-..+ .|.+.... ..+....|+.-++|..++|.+.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 47999999999999988766 58876431 2233344554446778888753
No 111
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.32 E-value=0.45 Score=28.54 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=35.7
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEec---CC--CccEEEEeCC---CCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLS---KS--GRPAIFTRDP---DANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~---~~--g~~~~~~~DP---dGn~iEl~~~ 118 (120)
++|+++.|+|++++.+..++ .|.+.... .. +...+++.+. .+..++|.+.
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 57999999999999998875 69887653 11 1234555554 5678888764
No 112
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.24 E-value=0.38 Score=29.23 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=33.8
Q ss_pred cceEEEEECCHHHHHHHHHHC----CCeEEecCCCccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~----Gv~~~~~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|+++.|+|++++.+...+. |.+......+ ...|+...++..|+|.+.
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 589999999999999988776 8887664322 223333345567777653
No 113
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=94.18 E-value=0.054 Score=39.18 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=50.2
Q ss_pred hhhhhhhhhhccCceEeccCCCCCCCce--e--EE-EEeCCeEEEEEecCCCCCCCCC---------CCCCCCcceEEEE
Q 033399 10 REINKHQRFNLLGLEINEARPHDKLPYR--G--AW-LWVGAEMIHLMELPNPDPLSGR---------PEHGGRDRHTCIA 75 (120)
Q Consensus 10 ~~~~~~fy~~vLG~~~~~~~~~~~~~~~--~--~~-l~~g~~~i~l~~~~~~~~~~~~---------~~~~~~~~hi~f~ 75 (120)
.+-...||.+.|||.....-++...+.. . +| +...+..|.+ ..+++.+.... .-.+++++|||+.
T Consensus 191 m~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~m-pinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL~ 269 (381)
T KOG0638|consen 191 MESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKM-PINEPAPGKKKKSQIQEYVEYHGGAGVQHIALN 269 (381)
T ss_pred chHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEE-eccCCCCCCccHHHHHHHHHhcCCCceeeeeec
Confidence 3456779999999998543333111110 0 11 2222333333 22332221111 1123568999999
Q ss_pred ECCHHHHHHHHHHCCCeEEe
Q 033399 76 IRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~ 95 (120)
++|+=++.+.|+++|.++..
T Consensus 270 tedIi~Ai~~lr~rG~eFLs 289 (381)
T KOG0638|consen 270 TEDIIEAIRGLRARGGEFLS 289 (381)
T ss_pred chHHHHHHHHHHhcCCcccc
Confidence 99999999999999999965
No 114
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=94.00 E-value=0.34 Score=27.87 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.9
Q ss_pred eEEEEECCHHHHHHHHHH-CCCeEEecCC--CccEEEEeCCCCCeEEEEeeC
Q 033399 71 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 71 hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~--g~~~~~~~DPdGn~iEl~~~~ 119 (120)
|+.+.|.|++++.+.+.+ .|.+...... ....+++.++ +..|+|.+..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 889999999999999987 9998876532 3456666665 7888887643
No 115
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=93.65 E-value=0.5 Score=27.89 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=34.0
Q ss_pred eEEEEECCHHHHHHHHHH-CCCeEEecC---CCccEEEEeCCCC--CeEEEEe
Q 033399 71 HTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDA--NALEFTQ 117 (120)
Q Consensus 71 hi~f~v~d~d~~~~~l~~-~Gv~~~~~~---~g~~~~~~~DPdG--n~iEl~~ 117 (120)
|+++.|.|++++.+..++ .|.++.... .+...+.+.+|++ ..++|.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeC
Confidence 899999999999998876 899887632 3445556667764 3555554
No 116
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.65 E-value=0.5 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=35.8
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecC-----CCccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSK-----SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~-----~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++|++|.|+|++++.+...+ .|.+..... .+...+++.. ++..++|.+.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~ 55 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEP 55 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEE
Confidence 36999999999999998876 888876521 1234455553 6788888875
No 117
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=93.61 E-value=0.4 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CcceEEEEEC--CHHHHHHHHHH-CCCeEEec------CCCccEEEEeCCCC-CeEEEEee
Q 033399 68 RDRHTCIAIR--DVSKLKMILDK-AGISYTLS------KSGRPAIFTRDPDA-NALEFTQV 118 (120)
Q Consensus 68 ~~~hi~f~v~--d~d~~~~~l~~-~Gv~~~~~------~~g~~~~~~~DPdG-n~iEl~~~ 118 (120)
.++|+++.|+ |++++.+..++ .|.+.... ..+.++..+..|+| ..|+|.++
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~ 63 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEP 63 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecC
Confidence 3689999999 99999998854 88877542 13466778888875 56788764
No 118
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=93.49 E-value=0.85 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.8
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCC--CCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DP--dGn~iEl~~~ 118 (120)
+.|+.+.|+|++++.+...+ .|.++.....+....|+..+ .+..+++.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999998876 89887664332244555543 3456776653
No 119
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=93.35 E-value=0.51 Score=28.43 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=29.7
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEE
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl 115 (120)
+|+++.|+|+++..+-.+..|.++.........+.+.-++|..|.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 6999999999999998887888765432211223344444544443
No 120
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=93.15 E-value=0.62 Score=27.83 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=34.2
Q ss_pred ceEEEEECCHHHHHHHHHHC-CCeEEec---CC-CccEEEEeCCC---CCeEEEEe
Q 033399 70 RHTCIAIRDVSKLKMILDKA-GISYTLS---KS-GRPAIFTRDPD---ANALEFTQ 117 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~-Gv~~~~~---~~-g~~~~~~~DPd---Gn~iEl~~ 117 (120)
.|+++.|.|++++.+..++. |.++... .. +...+++..++ +..+++.+
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTY 57 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEe
Confidence 69999999999999999764 9987652 22 23345555554 57788764
No 121
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.98 E-value=1 Score=27.14 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=33.5
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCCC-CCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DPd-Gn~iEl~~~ 118 (120)
++|+.+.|+|++++.+...+ .|.++..... ..+++..++ +..|.|.+.
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~~ 52 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEED 52 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEeC
Confidence 57999999999999998875 7988876532 234444444 456666543
No 122
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=92.60 E-value=1.1 Score=27.82 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=33.0
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecC--CCccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSK--SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~--~g~~~~~~~DPdGn~iEl~~ 117 (120)
++|+++.|+|++++.+..++ .|.++.... .+....++.+ ++..++|.+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~-g~~~l~l~~ 51 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQ-GDINFVLNS 51 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEc-CCEEEEEec
Confidence 37999999999999999988 999886632 1233344433 345566654
No 123
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=91.87 E-value=2.5 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.9
Q ss_pred CcceEEEEECCHHHHHHHHH-HCCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILD-KAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~-~~Gv~~~~ 95 (120)
..+|+++.|.|+++.++-.. ..|.++..
T Consensus 27 ~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~ 55 (185)
T PLN03042 27 IMQQTMFRIKDPKASLDFYSRVLGMSLLK 55 (185)
T ss_pred EEEEEEEeeCCHHHHHHHHHhhcCCEEEE
Confidence 56899999999999999775 57998755
No 124
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=91.42 E-value=1.5 Score=26.05 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=24.7
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEec
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTLS 96 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~ 96 (120)
.+.|+++.|+|++++.+.....|.++...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 36899999999999999888889888653
No 125
>PF15067 FAM124: FAM124 family
Probab=91.37 E-value=0.61 Score=32.35 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=48.9
Q ss_pred hhhhhhhhhhccCceEeccCCCCCCCceeEEEEe-CCeEEEE--EecCCCCCCCCCCCCCCCcceEEEEECCHHHHHHHH
Q 033399 10 REINKHQRFNLLGLEINEARPHDKLPYRGAWLWV-GAEMIHL--MELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 10 ~~~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~-g~~~i~l--~~~~~~~~~~~~~~~~~~~~hi~f~v~d~d~~~~~l 86 (120)
=+-+..||.-+|+=+....+++ +-..-+.. .+..|.| =..+. ...+... ...-+.|.|.|+-+++--|
T Consensus 141 ~~d~vr~Yelil~~~~~~~k~~----FC~F~lys~~~~~iQlsLK~lp~----~~~p~p~-esavLqF~V~~igqLvpLL 211 (236)
T PF15067_consen 141 YEDMVRFYELILQREPTQQKED----FCFFTLYSQPGLDIQLSLKQLPP----GMSPEPT-ESAVLQFRVEDIGQLVPLL 211 (236)
T ss_pred HHHHHHHHHHHhccCcceeeCC----cEEEEEecCCCeEEEEEeccCCC----CCCcccc-cceEEEEEecchhhhcccC
Confidence 3567789999999888533332 21111222 2333333 22321 1112211 2357999999999887665
Q ss_pred HHCCCeEEecCCCccEEEEeCCCCCeEEE
Q 033399 87 DKAGISYTLSKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 87 ~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl 115 (120)
=.--.++....| -..|||||.|-|
T Consensus 212 Pnpc~PIS~~rW-----qT~D~DGNkILL 235 (236)
T PF15067_consen 212 PNPCSPISETRW-----QTEDYDGNKILL 235 (236)
T ss_pred CCCcccccCCcc-----eeeCCCCCEecc
Confidence 332222222222 258999999854
No 126
>PRK11478 putative lyase; Provisional
Probab=91.35 E-value=1.6 Score=26.41 Aligned_cols=50 Identities=12% Similarity=-0.016 Sum_probs=32.0
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecC--C--CccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK--S--GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~--~--g~~~~~~~DPdGn~iEl~~ 117 (120)
+.+|+++.|+|++++.+..++ .|.++.... . +.....+.-.++..+|+.+
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 60 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFS 60 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEE
Confidence 368999999999999998854 798875321 1 1111112223456788775
No 127
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.98 E-value=1.7 Score=25.82 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.8
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 96 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~ 96 (120)
+++|+.+.|+|+++..+-.++ .|.+....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 368999999999999998877 79887664
No 128
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=90.68 E-value=1.9 Score=25.88 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=33.5
Q ss_pred cceEEEEECCHHHHHHHHH-HCCCeEEec----CCCccEEEEeCCCCCeEEEEee
Q 033399 69 DRHTCIAIRDVSKLKMILD-KAGISYTLS----KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~-~~Gv~~~~~----~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+.|+++.|+|++++.+..+ ..|.++... ..+.... +..+++..|+|.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVV-FIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEE-EEecCCEEEEEEec
Confidence 5799999999999999887 478887542 1233333 33344677888653
No 129
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=90.31 E-value=2.6 Score=25.38 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=30.9
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCCC-CCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DPd-Gn~iEl~ 116 (120)
+.|+++.|+|++++.+-..+ .|.+......+ ..+|+..++ +..+.+.
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 57999999999999998866 68877554222 234444433 3444443
No 130
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=90.15 E-value=2.7 Score=25.99 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=33.0
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCCC---CCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD---ANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DPd---Gn~iEl~~ 117 (120)
.+.|+++.|+|+++..+-.++ .|.++...... ...|+.-++ ...|++..
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 468999999999999998865 69887653222 234555432 35666654
No 131
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.84 E-value=2.6 Score=25.29 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=31.6
Q ss_pred ceEEEEECCHHHHHHHHHH----CCCeEEecCCCccEEEEeCCC-CCeEEEEe
Q 033399 70 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 117 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~----~Gv~~~~~~~g~~~~~~~DPd-Gn~iEl~~ 117 (120)
.|+++.|.|++++.+-.++ .|.+......+. .+++..++ +..+.|..
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPG-AVGYGKGGGGPDFWVTK 53 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCc-eeEeccCCCCceEEEec
Confidence 6999999999999988877 588876543122 23344443 45566654
No 132
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=89.59 E-value=3.8 Score=30.27 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred hhhhhhhhccCceEeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCC--CCCCCCCCCcceEEEEECCHHHHHHHHHHC
Q 033399 12 INKHQRFNLLGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--SGRPEHGGRDRHTCIAIRDVSKLKMILDKA 89 (120)
Q Consensus 12 ~~~~fy~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~i~l~~~~~~~~~--~~~~~~~~~~~hi~f~v~d~d~~~~~l~~~ 89 (120)
....-++..|||+....... ..+.+.-.+ .|.|+-...+... .....++.+..-++|.|+|.+.++++..+.
T Consensus 35 ~~l~~l~~~lGF~~~~~Hrs-----k~v~l~rQG-dinlvvn~~~~s~a~~f~~~Hgps~~a~a~~V~DA~~A~a~A~a~ 108 (363)
T COG3185 35 EALGALLGQLGFTAVAKHRS-----KAVTLYRQG-DINLVVNAEPDSFAAEFLDKHGPSACAMAFRVDDAEQALARALAL 108 (363)
T ss_pred HHHHHHHHHhCccccccccc-----cceeEEEeC-CEEEEEcCCCcchhhHHHHhcCCchheeEEeeCCHHHHHHHHHHc
Confidence 33445678999999632222 134444322 2333332222210 001123334578999999999999999999
Q ss_pred CCeEEec-------------CCCccEEEEeCCCC
Q 033399 90 GISYTLS-------------KSGRPAIFTRDPDA 110 (120)
Q Consensus 90 Gv~~~~~-------------~~g~~~~~~~DPdG 110 (120)
|.+.... .-|...+||-|+.|
T Consensus 109 gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 109 GARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred CCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 9955331 13456678888773
No 133
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=88.84 E-value=3.3 Score=24.38 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=32.7
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCC-C-CCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-D-ANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DP-d-Gn~iEl~~ 117 (120)
+.|+.|.|+|+++..+-.++ .|.++..... ..+|+..+ + ...+.+.+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 52 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCSEDDHHSLVLTE 52 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecCCCCcEEEEEEe
Confidence 57999999999999998887 8888876432 24555554 2 33444443
No 134
>PLN02367 lactoylglutathione lyase
Probab=87.51 E-value=4.9 Score=28.03 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=23.7
Q ss_pred CcceEEEEECCHHHHHHHH-HHCCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMIL-DKAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l-~~~Gv~~~~ 95 (120)
...|.+++|.|+++.++-. +..|.++..
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~ 103 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLK 103 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeE
Confidence 4689999999999999877 458998765
No 135
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=87.49 E-value=2.5 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
++|+++.|.|++++.+...+ .|.++..
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~ 29 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVE 29 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEe
Confidence 58999999999999987765 7888765
No 136
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.44 E-value=3.5 Score=23.27 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCeEEec----C--CCccEEEEeCCCCCeEE
Q 033399 79 VSKLKMILDKAGISYTLS----K--SGRPAIFTRDPDANALE 114 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~----~--~g~~~~~~~DPdGn~iE 114 (120)
+..+.+-|.+.|+.+... . .-.-.||+.|++|+.|+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 667788899999999762 1 22477999999998763
No 137
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=87.15 E-value=3.9 Score=25.03 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=36.4
Q ss_pred cceEEEEE------CCHHHHHHHHHHCCCeEEe--c----------CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 69 DRHTCIAI------RDVSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 69 ~~hi~f~v------~d~d~~~~~l~~~Gv~~~~--~----------~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
..-+++.+ ++.+++.+.++++++.+.. . ..+....|+.|++|+++....-+|
T Consensus 57 ~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~~ 126 (126)
T cd03012 57 LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGEG 126 (126)
T ss_pred eEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecCC
Confidence 34555554 3577788888898887632 1 134578899999999998776554
No 138
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.43 E-value=6.9 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.9
Q ss_pred cceEEEEECCHHHHHHHHH-HCCCeEEe
Q 033399 69 DRHTCIAIRDVSKLKMILD-KAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~-~~Gv~~~~ 95 (120)
..|+++.|.|++..++--. ..|.+...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 5799999999999999884 58998754
No 139
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.88 E-value=2.6 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.3
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeE
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISY 93 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~ 93 (120)
...+.|.+++.+.+.+.|+++|+++
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3678999999999999999999875
No 140
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=84.74 E-value=7.7 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.9
Q ss_pred CcceEEEEECCHHHHHHHHH-HCCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILD-KAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~-~~Gv~~~~ 95 (120)
.+.|+++.|+|++++.+-.+ ..|.++..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEE
Confidence 46899999999999998884 47877654
No 141
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=84.55 E-value=8.2 Score=24.58 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=33.6
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec---C----CCccEEEEe-CCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLS---K----SGRPAIFTR-DPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~---~----~g~~~~~~~-DPdGn~iEl~~ 117 (120)
++.|+++.|+|++++.+-..+ .|.++... . .+....|++ ++....|.+.+
T Consensus 9 ~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 9 GLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred ccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 578999999999999998865 88887542 1 122344443 44556666644
No 142
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=84.31 E-value=7.4 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=22.2
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
++|+++.|+|++++.+...+ .|.++..
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEec
Confidence 36999999999999988875 5877654
No 143
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=83.78 E-value=6.5 Score=25.02 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.6
Q ss_pred cceEEEEECCHHHHHHHH-HHCCCeEEe
Q 033399 69 DRHTCIAIRDVSKLKMIL-DKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l-~~~Gv~~~~ 95 (120)
+.|+++.|+|+++..+.. +..|.++..
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~ 29 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSD 29 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEe
Confidence 579999999999998877 458988754
No 144
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.74 E-value=7.3 Score=23.41 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.2
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEe
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~ 95 (120)
.++.+.|+|+++..+-.+..|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 47899999999999988888888754
No 145
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=83.66 E-value=6.8 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.8
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEec
Q 033399 70 RHTCIAIRDVSKLKMILDK-AGISYTLS 96 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~-~Gv~~~~~ 96 (120)
.|+++.|.|+++..+-..+ .|.++...
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~ 29 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDM 29 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeec
Confidence 6999999999999998876 49887653
No 146
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=82.95 E-value=8.3 Score=23.53 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=31.7
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEecCC--C-ccEEEEeCCC-CCeEEEEe
Q 033399 70 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 117 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~--g-~~~~~~~DPd-Gn~iEl~~ 117 (120)
.|+++.|.|++++.+-..+ .|.+...... + ....|++..+ +..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4999999999999998865 7988754211 2 2344555433 34566654
No 147
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=82.78 E-value=8 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.5
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 96 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~ 96 (120)
++.|++|.|+|++++.+-..+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 368999999999999998865 89887654
No 148
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=82.02 E-value=8.6 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=31.4
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeC-C--CCCeEEEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-P--DANALEFT 116 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~D-P--dGn~iEl~ 116 (120)
.++|+++.|+|++++.+-..+ .|.++..... ..+|++- + ....+++.
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--~~~~l~~~~~~~~~~~~l~ 56 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGREG--QSVYLRAWGDYEHHSLKLT 56 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--CeEEEEeccCCCccEEEEe
Confidence 468999999999999998876 4888765432 2344542 2 23455554
No 149
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=81.61 E-value=9.1 Score=23.01 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=30.9
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
...|+++.|.|++++.+-.++ .|.+..... +. ..++.-.+|..+++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~-~~-~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF-GP-FAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc-CC-EEEEEcCCCcEEEEec
Confidence 358999999999999988854 588776532 21 2233333455555544
No 150
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=81.56 E-value=9.4 Score=23.13 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=30.9
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCccEEEEe-CCCCCeEEEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 116 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~~~g~~~~~~~-DPdGn~iEl~ 116 (120)
.+.|+++.|+|++++.+...+ .|.+......+ .+|+. ++++..+-+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 357999999999999998876 58887554222 33443 3344444443
No 151
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=80.92 E-value=10 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=23.2
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
+++|+++.|+|+++..+-..+ .|.+...
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEE
Confidence 468999999999999988865 8887644
No 152
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=80.77 E-value=11 Score=23.36 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=23.1
Q ss_pred CcceEEEEECCHHHHHHHHH-HCCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILD-KAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~-~~Gv~~~~ 95 (120)
++.|+++.|+|++++.+-.. ..|.++..
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~ 32 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLV 32 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEe
Confidence 36899999999999999885 47877754
No 153
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.66 E-value=12 Score=24.56 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=39.0
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEe------------c----C--------CCccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTL------------S----K--------SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~------------~----~--------~g~~~~~~~DPdGn~iEl~ 116 (120)
...+++++|+.++..+-.+++|+++.- . . .-.|+.|+.||||.+..+.
T Consensus 65 a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 65 AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 478999999999999999999998743 0 0 1248899999999998876
No 154
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=80.66 E-value=8.9 Score=24.23 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=36.1
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEe--c-------CCC---------------ccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTL--S-------KSG---------------RPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~--~-------~~g---------------~~~~~~~DPdGn~iEl~~ 117 (120)
..-+++.+++.+++.+.+++.|+++.. . ..| .+..|+.||+|.++....
T Consensus 65 v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 65 VVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 567888888888888888888887633 1 011 145689999999988764
No 155
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=78.84 E-value=17 Score=24.36 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=33.6
Q ss_pred cceEEEEECCHHHHHHHHHH----CCCeE--Eec--------------CCCc--cEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK----AGISY--TLS--------------KSGR--PAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~----~Gv~~--~~~--------------~~g~--~~~~~~DPdGn~iEl~~ 117 (120)
..-+++++++.++..+..+. .++++ ... ..|. +..|+.||+|++..+..
T Consensus 66 ~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 66 VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 46799999998876655544 35544 220 1243 88999999999987754
No 156
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=78.82 E-value=11 Score=22.33 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 96 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~~ 96 (120)
++.|+.+.|+|++++.+...+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 468999999999999998876 88887654
No 157
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=77.73 E-value=16 Score=23.43 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.6
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
.++|+++.|.|+++..+-..+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 368999999999999998876 7887754
No 158
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=77.22 E-value=4.6 Score=28.50 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEE
Q 033399 79 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 114 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iE 114 (120)
.+++.+.++++|+.+....-..-++|+.|||++.+=
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lF 185 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLF 185 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEE
Confidence 556778899999999334445678999999988764
No 159
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=77.14 E-value=14 Score=22.65 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=35.0
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEe--c-------C---CCc---------cEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTL--S-------K---SGR---------PAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~--~-------~---~g~---------~~~~~~DPdGn~iEl~ 116 (120)
..-+++.+++.+++.+.+++.++.+.. . . ... ...|+.||+|.++-..
T Consensus 58 ~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 58 AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 567888889888888888888877633 1 0 111 5789999999887765
No 160
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=76.86 E-value=5 Score=23.47 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.8
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 69 DRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
..|+++.|+|+++..+-.++ .|.++..
T Consensus 3 l~hv~l~v~dl~~s~~FY~~~LG~~~~~ 30 (138)
T COG0346 3 IHHVTLAVPDLEASIDFYTDVLGLRLVK 30 (138)
T ss_pred eEEEEEeeCCHhHhHHHHHhhcCCeeee
Confidence 57999999999999998887 8888866
No 161
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.22 E-value=6.2 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEe
Q 033399 70 RHTCIAIRD----VSKLKMILDKAGISYTL 95 (120)
Q Consensus 70 ~hi~f~v~d----~d~~~~~l~~~Gv~~~~ 95 (120)
..+.++|+| ++.+.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 567789888 99999999999999865
No 162
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=75.65 E-value=14 Score=21.82 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.0
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEec
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTLS 96 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~~ 96 (120)
+.|+.+.|+|++++.+-..+.|.+....
T Consensus 4 l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 4 IAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 5799999999999999888889877543
No 163
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=74.99 E-value=7.9 Score=18.64 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.0
Q ss_pred CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 97 KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 97 ~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+.|...-|-.|+.|+++.+..+.|
T Consensus 13 ~~G~~~~y~YD~~g~l~~~t~~~G 36 (38)
T PF05593_consen 13 PDGRTTRYTYDAAGRLTSVTDPDG 36 (38)
T ss_pred CCCCEEEEEECCCCCEEEEECCCC
Confidence 556666788999999999887765
No 164
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=74.84 E-value=6.7 Score=23.50 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=34.5
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEe--c----------CC------CccEEEEeCCCCCeE
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTL--S----------KS------GRPAIFTRDPDANAL 113 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~--~----------~~------g~~~~~~~DPdGn~i 113 (120)
+..-+++.+++.++..+.+++.++.+.- . .. .....|+.||+|+++
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 3567889999999888888888765432 1 11 457899999999875
No 165
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=74.19 E-value=8.4 Score=18.66 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=17.2
Q ss_pred CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 97 KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 97 ~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+.|...-|-.|+.|++++...+.|
T Consensus 13 p~G~~~~~~YD~~Grl~~~tdp~g 36 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITDADG 36 (42)
T ss_pred CCCCEEEEEECCCCCEEEEECCCC
Confidence 456666777788888888776654
No 166
>PRK06724 hypothetical protein; Provisional
Probab=73.53 E-value=19 Score=22.27 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=20.2
Q ss_pred CcceEEEEECCHHHHHHHHHH----CCCeEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDK----AGISYT 94 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~----~Gv~~~ 94 (120)
+++|+++.|.|+++..+...+ .|.+..
T Consensus 7 ~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 478999999999987765544 466553
No 167
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=72.56 E-value=8.5 Score=24.20 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=23.1
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
.+.|+++.|.|+++..+-.++ .|.++..
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~ 34 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAE 34 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEE
Confidence 468999999999999988855 8887643
No 168
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.43 E-value=15 Score=20.83 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCeEEec---CCC---ccEEEEeCCCCCeEE
Q 033399 79 VSKLKMILDKAGISYTLS---KSG---RPAIFTRDPDANALE 114 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~---~~g---~~~~~~~DPdGn~iE 114 (120)
+..+..-|.+.|+.+... ..| .-.||++|.+|..|+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 556777889999998662 122 467999999998763
No 169
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=71.43 E-value=8.8 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.6
Q ss_pred CcceEEEEECCHHHHHHHHH-HCCCeEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILD-KAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~-~~Gv~~~~ 95 (120)
+++|++|.|+|++++.+... -.|.+...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~ 34 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLRE 34 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEE
Confidence 46899999999999999886 48888654
No 170
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.20 E-value=12 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=21.1
Q ss_pred cceEEEEEC--CHHHHHHHHHHCCCeEEe
Q 033399 69 DRHTCIAIR--DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~--d~d~~~~~l~~~Gv~~~~ 95 (120)
...+.|.++ +.+.+.+.|+++|+++..
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 345666664 888999999999998764
No 171
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=70.97 E-value=19 Score=21.13 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=28.0
Q ss_pred EEEEECCHHHHHHHHHHC-CCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 72 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 72 i~f~v~d~d~~~~~l~~~-Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
+++.|+|++++.+...+. |.++..... ....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-DGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-CceEEEEc-CCeEEEEec
Confidence 678999999999988766 887755411 12233333 555666654
No 172
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.62 E-value=12 Score=20.09 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.5
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYT 94 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~ 94 (120)
..+-+.++|.+.+.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 3566677899999999999999864
No 173
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=70.46 E-value=5.8 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.0
Q ss_pred CcceEEEEE------CCHHHHHHHHHHCCCeEE
Q 033399 68 RDRHTCIAI------RDVSKLKMILDKAGISYT 94 (120)
Q Consensus 68 ~~~hi~f~v------~d~d~~~~~l~~~Gv~~~ 94 (120)
..+|+...| .|++++.+.|+++|+++.
T Consensus 184 ~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 184 HINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp S-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 468999999 999999999999999997
No 174
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=69.30 E-value=4 Score=28.23 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=29.7
Q ss_pred EEEEECCHHHHHHHHHHCCCeEEec--CCCccEEEEeCCCCCeEEEE
Q 033399 72 TCIAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 72 i~f~v~d~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPdGn~iEl~ 116 (120)
.+|.-.|.+.+++.| .|+.+... ..+...|.+.||||+-.-++
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 182 TSIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhhc
Confidence 345556777777755 77888773 34567888999999876543
No 175
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=68.27 E-value=6.4 Score=24.69 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEe
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~ 95 (120)
.-+-++|+|+|++...|+++|+.+..
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 45778899999999999999999865
No 176
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=64.01 E-value=22 Score=22.23 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCcceEEEEECCHHHHHHHHHH-CCCeEEe
Q 033399 67 GRDRHTCIAIRDVSKLKMILDK-AGISYTL 95 (120)
Q Consensus 67 ~~~~hi~f~v~d~d~~~~~l~~-~Gv~~~~ 95 (120)
-++.|+++.|.|++++.+..++ .|.++..
T Consensus 16 ~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 16 RRLLHTMLRVGDLDKSLDFYTEVLGMKLLR 45 (150)
T ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCEEEE
Confidence 3578999999999999998875 7888754
No 177
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=63.89 E-value=16 Score=28.41 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=26.4
Q ss_pred HHHHHHHCCCeEEe----cCCCccEEEEeCCCCCeEEE
Q 033399 82 LKMILDKAGISYTL----SKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 82 ~~~~l~~~Gv~~~~----~~~g~~~~~~~DPdGn~iEl 115 (120)
+...|.++|++++- ..-|.+..-.+|+||+.+|-
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeee
Confidence 45678999999866 23566777789999999984
No 178
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.76 E-value=16 Score=19.87 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.6
Q ss_pred cceEEEEECC---HHHHHHHHHHCCCeEE
Q 033399 69 DRHTCIAIRD---VSKLKMILDKAGISYT 94 (120)
Q Consensus 69 ~~hi~f~v~d---~d~~~~~l~~~Gv~~~ 94 (120)
..++.+++.+ ++++.+.|+++|+++.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3578888864 7788999999998763
No 179
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=63.68 E-value=38 Score=22.02 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=20.9
Q ss_pred cceEEEEECCHH---HHHHHHHHCCCeEEec
Q 033399 69 DRHTCIAIRDVS---KLKMILDKAGISYTLS 96 (120)
Q Consensus 69 ~~hi~f~v~d~d---~~~~~l~~~Gv~~~~~ 96 (120)
.+|+|++|.+.+ .+.+.|.+.|-.+...
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen 32 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSEN 32 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcc
Confidence 379999999755 5567778888776654
No 180
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=59.99 E-value=37 Score=20.71 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=32.8
Q ss_pred ECCHHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 76 IRDVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+.++...+.+|++.|---+.. ..|.-.+...|++|++++-....|
T Consensus 23 ik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~G 72 (109)
T PF06923_consen 23 IKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMKG 72 (109)
T ss_pred HHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEec
Confidence 345778889999999433332 245666778899999999887765
No 181
>PHA00450 host dGTPase inhibitor
Probab=59.29 E-value=25 Score=20.38 Aligned_cols=39 Identities=5% Similarity=-0.009 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHCCCeEEecC-------CCccEEEEeCCCCCeEEEE
Q 033399 78 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~-------~g~~~~~~~DPdGn~iEl~ 116 (120)
++.++.+||.+..+.++... .....+-+.|-+|++|--.
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~ 56 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASR 56 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeee
Confidence 57889999999998886631 2235567889999998653
No 182
>PRK11700 hypothetical protein; Provisional
Probab=58.92 E-value=54 Score=22.19 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=21.2
Q ss_pred cceEEEEECCHH---HHHHHHHHCCCeEEec
Q 033399 69 DRHTCIAIRDVS---KLKMILDKAGISYTLS 96 (120)
Q Consensus 69 ~~hi~f~v~d~d---~~~~~l~~~Gv~~~~~ 96 (120)
..|+|++|.+.+ .+.+.|.+.|--+...
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen 70 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSEN 70 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhcc
Confidence 489999999755 5667788888777554
No 183
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=58.47 E-value=21 Score=22.25 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=32.8
Q ss_pred ECCHHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 76 IRDVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+.++...+.+|.++|---... ..|.-.+...|++|.++|-..+.|
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G 73 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKG 73 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEcc
Confidence 446778889999998643332 245566778899999999887766
No 184
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=58.04 E-value=47 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=32.4
Q ss_pred cceEEEEEC--------CHHHHHHHHHHCCCeEEe--c----------CCCccEEEEeCCCCCeEEE
Q 033399 69 DRHTCIAIR--------DVSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 69 ~~hi~f~v~--------d~d~~~~~l~~~Gv~~~~--~----------~~g~~~~~~~DPdGn~iEl 115 (120)
..-+++.++ +.+++.+.+++.++++.. . ..+....|+.||+|.++-.
T Consensus 59 v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 59 VAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred eEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 455777775 467788888888887533 1 1234678999999988744
No 185
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=57.96 E-value=34 Score=22.74 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=27.6
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEE
Q 033399 71 HTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 71 hi~f~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl 115 (120)
-+++..++.+++.+.|++.|+.++.... .-++.+++|..|.+
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~~~---~~~l~~~~g~llDl 87 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITETTD---YGFLADDDGRLLDL 87 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEEET---EEEEEETTTEEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEecc---ccEEEcCCCCEEEe
Confidence 4677778999999999999998876321 12245555554443
No 186
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=57.64 E-value=27 Score=18.56 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHCCCeEEec-CCCccEEEEeCCCCCeEEEEeeCC
Q 033399 78 DVSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~-~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
++++..++-..+|-.+... ..|. +-..+|||.+|-|.+..|
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~--~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGP--VAAFAPDGRLVALLEERG 46 (56)
T ss_dssp E--HHHHHHHHTT---B-----S---EEEE-TTS-EEEEEEEET
T ss_pred ECCHHHHHHHhCCCccCCCCCCce--EEEECCCCcEEEEEEccC
Confidence 3555556666777777654 2333 235699999999987643
No 187
>PRK13599 putative peroxiredoxin; Provisional
Probab=57.24 E-value=54 Score=22.40 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred cceEEEEECCHHHH---HHHHHHC---CCeE--Eec-------C----------CCccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKL---KMILDKA---GISY--TLS-------K----------SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~---~~~l~~~---Gv~~--~~~-------~----------~g~~~~~~~DPdGn~iEl~~ 117 (120)
..-+++++++.... .+.+++. ++++ ... . ...++.|+.||+|.+..+..
T Consensus 63 v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 63 TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 56899999987644 3344432 4443 221 0 13588999999999877653
No 188
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.69 E-value=29 Score=18.17 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.3
Q ss_pred ceEEEEECC---HHHHHHHHHHCCCeEE
Q 033399 70 RHTCIAIRD---VSKLKMILDKAGISYT 94 (120)
Q Consensus 70 ~hi~f~v~d---~d~~~~~l~~~Gv~~~ 94 (120)
.++.+.+.+ ++.+.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345566655 4588999999998874
No 189
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=55.68 E-value=16 Score=15.67 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.2
Q ss_pred EEEEeCCCCCeE
Q 033399 102 AIFTRDPDANAL 113 (120)
Q Consensus 102 ~~~~~DPdGn~i 113 (120)
...+.|++|+++
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 345689999886
No 190
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=55.06 E-value=38 Score=19.23 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=34.4
Q ss_pred cceEEEEECC--HHHHHHHHHHCCCeEEe--c----------CCCccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRD--VSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d--~d~~~~~l~~~Gv~~~~--~----------~~g~~~~~~~DPdGn~iEl~ 116 (120)
...+++.++. .+.+.+.+++.+..+.. . ..+...+++.||+|.++...
T Consensus 53 ~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 53 VEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred eEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 5678888876 88888888888765532 0 12456788999999887543
No 191
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.39 E-value=15 Score=19.69 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=17.6
Q ss_pred eEEEEE---CCHHHHHHHHHHCCCeE
Q 033399 71 HTCIAI---RDVSKLKMILDKAGISY 93 (120)
Q Consensus 71 hi~f~v---~d~d~~~~~l~~~Gv~~ 93 (120)
++.+.+ +|.+.+.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 445656 46789999999999864
No 192
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=54.05 E-value=57 Score=20.96 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=32.4
Q ss_pred cceEEEEEC-CHHHHHHHHHHCCCeEEe---------------cCCCccEEEEeCCCCCeEE
Q 033399 69 DRHTCIAIR-DVSKLKMILDKAGISYTL---------------SKSGRPAIFTRDPDANALE 114 (120)
Q Consensus 69 ~~hi~f~v~-d~d~~~~~l~~~Gv~~~~---------------~~~g~~~~~~~DPdGn~iE 114 (120)
+.-+++.++ +.+++.+.+++.++.+.. ...+....++.||+|+++.
T Consensus 66 ~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 66 LALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 456777777 456677888888865311 1245678899999999874
No 193
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=53.65 E-value=40 Score=19.07 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=29.3
Q ss_pred CcceEEEEEC-CHHHHHHHHHHCCCeEEe---------------cCCCccEEEEeCCCCCe
Q 033399 68 RDRHTCIAIR-DVSKLKMILDKAGISYTL---------------SKSGRPAIFTRDPDANA 112 (120)
Q Consensus 68 ~~~hi~f~v~-d~d~~~~~l~~~Gv~~~~---------------~~~g~~~~~~~DPdGn~ 112 (120)
.+.-+++.++ +.+++.+.+++.+..... ...+...+++.||+|++
T Consensus 35 ~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 35 DVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred CEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 3456677776 577888888888554322 12456778899999974
No 194
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=51.56 E-value=49 Score=19.58 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCeEEecCCC-------ccEEEEeCCCC
Q 033399 79 VSKLKMILDKAGISYTLSKSG-------RPAIFTRDPDA 110 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g-------~~~~~~~DPdG 110 (120)
.+++.+.++++|+++.-...| ...+-+.+|+|
T Consensus 20 ~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g 58 (92)
T cd03063 20 AEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGG 58 (92)
T ss_pred HHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCC
Confidence 567778889999743322222 23344556766
No 195
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=51.55 E-value=19 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.5
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYT 94 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~ 94 (120)
.|+-.+-.|++.+.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666666799999999999998764
No 196
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=51.26 E-value=41 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCC
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDAN 111 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn 111 (120)
|++.+.+.|++.|+++..+. ...|.++|.--+|.
T Consensus 106 Ni~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~ 142 (159)
T PRK13495 106 NVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGK 142 (159)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 79999999999999998853 22466665433343
No 197
>PHA00446 hypothetical protein
Probab=50.77 E-value=5.5 Score=23.00 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=9.3
Q ss_pred Ccceeeccchhhh
Q 033399 1 MLYKYKRKKREIN 13 (120)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (120)
|.|.||..+++..
T Consensus 32 mVyRWKd~ks~ka 44 (89)
T PHA00446 32 MVYRWKDHKSSKA 44 (89)
T ss_pred EEEEecccCCchh
Confidence 6788888776543
No 198
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=50.66 E-value=26 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.3
Q ss_pred cceEEEEECCHH---HHHHHHHHCCCeEEe
Q 033399 69 DRHTCIAIRDVS---KLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d~d---~~~~~l~~~Gv~~~~ 95 (120)
..|+|++|.+.+ .+.+.|.+.|-.+..
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSe 64 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSE 64 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEE
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhh
Confidence 589999999755 566777888855544
No 199
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=50.65 E-value=39 Score=19.69 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHCCCeEEec-----CC--CccEEEEeCCCCCeE
Q 033399 78 DVSKLKMILDKAGISYTLS-----KS--GRPAIFTRDPDANAL 113 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~-----~~--g~~~~~~~DPdGn~i 113 (120)
++.++.+||.+..+.+..+ .. ....+-+.|-+||+|
T Consensus 11 afKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v 53 (85)
T PF10922_consen 11 AFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSV 53 (85)
T ss_pred HHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEe
Confidence 5788999999998877663 12 234466779999988
No 200
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=50.64 E-value=42 Score=22.18 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHCCCeEEecCC---CccEEEEeCCCCCeEE
Q 033399 78 DVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALE 114 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~~---g~~~~~~~DPdGn~iE 114 (120)
|++.+.+.|++.|+++..+.. ..|.++| ||+-..+.
T Consensus 116 Ni~~a~~~L~~~gi~i~a~DvGG~~gR~i~f-~~~tG~v~ 154 (167)
T PRK13498 116 NIHAALALAEQNGLHLKAQDLGSTGHRSIIF-DLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCCcEEEE-ECCCCEEE
Confidence 799999999999999988532 2466655 44433333
No 201
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=50.48 E-value=6.2 Score=19.93 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=7.8
Q ss_pred hhhhhhhhhcc
Q 033399 11 EINKHQRFNLL 21 (120)
Q Consensus 11 ~~~~~fy~~vL 21 (120)
+.+|.|||+.|
T Consensus 3 e~ERdFYf~KL 13 (43)
T PF03271_consen 3 EKERDFYFNKL 13 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 56788888654
No 202
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=50.46 E-value=50 Score=19.27 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=29.9
Q ss_pred ceEEEEECCHHHHHHHHH-HCCCeEEecCCCccEEEEeCCCCCeEEEE
Q 033399 70 RHTCIAIRDVSKLKMILD-KAGISYTLSKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~-~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~ 116 (120)
.|+++.|.|++++.+..+ ..|.+......+ ..+++.-.++..+.+.
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~~~l~~~~~~~~~l~ 48 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKEDR-RLAFFWVGGRGMLLLF 48 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCCC-ceEEEEcCCCcEEEEE
Confidence 478999999999999886 578887653222 2344444444444444
No 203
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=50.42 E-value=42 Score=22.06 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
|++.+.+.|++.|+++..+. ...|.++| ||+-..+.+
T Consensus 113 Nv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f-~~~tG~v~v 152 (162)
T PRK13490 113 NGKAVKKKLKELSIPILAEDIGGNKGRTMIF-DTSDGKVYI 152 (162)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCCcEEEE-ECCCCEEEE
Confidence 79999999999999998853 22466655 444444444
No 204
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=50.22 E-value=28 Score=17.89 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.1
Q ss_pred cEEEEeCCCCCeEEEE
Q 033399 101 PAIFTRDPDANALEFT 116 (120)
Q Consensus 101 ~~~~~~DPdGn~iEl~ 116 (120)
-+..+.||||+.+.+.
T Consensus 29 GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEEECCCCCEEEEE
Confidence 3456789999988774
No 205
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.15 E-value=29 Score=20.12 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=21.6
Q ss_pred cceEEEE--ECCHHHHHHHHHHCCCeEEe
Q 033399 69 DRHTCIA--IRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~--v~d~d~~~~~l~~~Gv~~~~ 95 (120)
..|+-|- +.+++++.+.|++.|+++..
T Consensus 50 Sy~V~Fl~~~~s~eev~~ele~mga~in~ 78 (88)
T COG4009 50 SYYVVFLEEVESEEEVERELEDMGAEINR 78 (88)
T ss_pred eEEEEEEeccCCHHHHHHHHHHhCchhcc
Confidence 3576664 56899999999999998854
No 206
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=49.88 E-value=46 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 77 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
.|++.+.+.|++.|+++.... ...|.++| ||.-..+.+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f-~~~tG~v~v 104 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRF-DPATGEVWV 104 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEE-ETTTTEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEE-EcCCCEEEE
Confidence 479999999999999998742 33566765 454433333
No 207
>PTZ00056 glutathione peroxidase; Provisional
Probab=47.21 E-value=86 Score=21.05 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=33.4
Q ss_pred cceEEEEE--------CCHHHHHHHHHHCCCeEEec--------------------------CCC-------ccEEEEeC
Q 033399 69 DRHTCIAI--------RDVSKLKMILDKAGISYTLS--------------------------KSG-------RPAIFTRD 107 (120)
Q Consensus 69 ~~hi~f~v--------~d~d~~~~~l~~~Gv~~~~~--------------------------~~g-------~~~~~~~D 107 (120)
+.-+++.+ ++.+++.+.+++.|+.+..- ..+ ....|+.|
T Consensus 73 ~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID 152 (199)
T PTZ00056 73 LEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVN 152 (199)
T ss_pred eEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEEC
Confidence 56678876 46778888899998866320 001 11578999
Q ss_pred CCCCeEEEEe
Q 033399 108 PDANALEFTQ 117 (120)
Q Consensus 108 PdGn~iEl~~ 117 (120)
++|+++....
T Consensus 153 ~~G~iv~~~~ 162 (199)
T PTZ00056 153 KSGNVVAYFS 162 (199)
T ss_pred CCCcEEEEeC
Confidence 9999997653
No 208
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=47.06 E-value=52 Score=22.16 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCe
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 112 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~ 112 (120)
|++.+.+.|++.|+++..+. ...|.++|.--+|..
T Consensus 113 Ni~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v 150 (184)
T PRK13497 113 NAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRA 150 (184)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeE
Confidence 79999999999999998853 224666654444544
No 209
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.18 E-value=19 Score=26.33 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.3
Q ss_pred CcceEEEEECCHHHHHHHH
Q 033399 68 RDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l 86 (120)
.+.||||.|||+|++...+
T Consensus 168 tYP~icFavD~FdevF~dv 186 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDV 186 (390)
T ss_pred ccceEEEEecCHHHhhhhh
Confidence 4679999999999998755
No 210
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=45.42 E-value=27 Score=20.45 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred cceEEEEECC---HHHHHHHHHHCCCeEEe
Q 033399 69 DRHTCIAIRD---VSKLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~d---~d~~~~~l~~~Gv~~~~ 95 (120)
...++|.|++ ++++.++|++.|+++..
T Consensus 51 ~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 51 RVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp EEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 4678999974 67899999999999876
No 211
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.28 E-value=70 Score=21.08 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
|++.+.+.|++.|+++..+. ...|.++| +|+-..+.+
T Consensus 115 Nv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f-~~~tG~v~v 154 (163)
T PRK13494 115 NSEFAVNTLNKYGIPILAKDFDQSKSRKIFV-FPENFKVIV 154 (163)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEE-ECCCCEEEE
Confidence 79999999999999998853 23466665 344333333
No 212
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=44.68 E-value=89 Score=20.51 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=33.5
Q ss_pred cceEEEEEC-CHHHHHHHHHHCCCeEEe-------------cCCCccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIR-DVSKLKMILDKAGISYTL-------------SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~-d~d~~~~~l~~~Gv~~~~-------------~~~g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++.++ +.+++.+.+++.|+++.. ...+....|+.||+|.++...
T Consensus 98 ~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 98 IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 456777764 577788888888876531 123456789999999877654
No 213
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=44.54 E-value=59 Score=22.08 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=24.0
Q ss_pred EECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCC
Q 033399 75 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 110 (120)
Q Consensus 75 ~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdG 110 (120)
.+.+++++.+.|++.|+++.....+...+.+.|.++
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 457899999999999999984333333333444443
No 214
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=43.92 E-value=58 Score=22.48 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
|++.+.+.|++.|+++..+. ...|.++| +|+-..+.+
T Consensus 140 Ni~~a~~~L~~~gI~Iva~DvGG~~gRki~f-~~~tG~v~v 179 (213)
T PRK13493 140 NVEFVLEYAKREKLNVVAQDLGGAQPRKLLF-DPQTGQAWV 179 (213)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEE-ECCCCEEEE
Confidence 78999999999999998853 22455654 344333333
No 215
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=43.66 E-value=33 Score=18.29 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=11.2
Q ss_pred cEEEEeCCCCCeEEEEe
Q 033399 101 PAIFTRDPDANALEFTQ 117 (120)
Q Consensus 101 ~~~~~~DPdGn~iEl~~ 117 (120)
..|.|.|++|+++.+.-
T Consensus 10 s~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVKV 26 (54)
T ss_dssp -EEEEE-TTS-EEEEEG
T ss_pred CeeEEECCCCCEEEEEh
Confidence 46788999999998753
No 216
>PRK03467 hypothetical protein; Provisional
Probab=43.62 E-value=88 Score=20.20 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHCCCeEEe-----cCCCccEEEEeCCCCCeEEEEee
Q 033399 77 RDVSKLKMILDKAGISYTL-----SKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~-----~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
++++.+.+.|++.-+--.. .+|....+|+.|+++..+=+.+.
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~ 51 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTE 51 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcC
Confidence 3566777778777664322 24666788889999988776553
No 217
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=43.58 E-value=95 Score=20.52 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=31.2
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEe---c--------CCCccEEEEeCCCCCeEE
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTL---S--------KSGRPAIFTRDPDANALE 114 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~---~--------~~g~~~~~~~DPdGn~iE 114 (120)
.-+++..++.++..+.++++++++.. . ..+....|+.|++|.++.
T Consensus 106 ~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 106 DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRA 161 (189)
T ss_pred cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCCeEEE
Confidence 44666777888888889989876421 1 133456788999997764
No 218
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=43.58 E-value=93 Score=20.43 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCeEEe---c-----CCCccEEEEeC-CCCCeEEEEeeCC
Q 033399 79 VSKLKMILDKAGISYTL---S-----KSGRPAIFTRD-PDANALEFTQVDG 120 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~---~-----~~g~~~~~~~D-PdGn~iEl~~~~~ 120 (120)
+.+..++|.+.|+.+.. . ..+...+.++| ++|..+.|.|..|
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG 66 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLG 66 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccC
Confidence 55667899999999854 1 12233455555 6799999999765
No 219
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=43.41 E-value=99 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=29.8
Q ss_pred cceEEEEECCHHHHHHHHH---H---CCCeEEe--c-------CC-----------CccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILD---K---AGISYTL--S-------KS-----------GRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~---~---~Gv~~~~--~-------~~-----------g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++.+++.+...+.++ + .++++.. . .. ..+..|+.||+|.+....
T Consensus 60 v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 60 VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 4678999998765444332 2 4665422 0 01 135689999999887654
No 220
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=43.38 E-value=63 Score=21.11 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 77 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
.|++.+.+.|++.|+++..+. ...|.++| +|+-..+.+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f-~~~tG~v~v 147 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDVGGDYGRTVKF-DLKTGKVIV 147 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEE-ECCCCEEEE
Confidence 479999999999999998853 22466655 454333333
No 221
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=42.76 E-value=78 Score=20.93 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCe
Q 033399 77 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 112 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~ 112 (120)
.|.+.+.+.|++.|+++..+. ...|.++|.--+|.+
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 478999999999999998853 235777764334543
No 222
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=42.76 E-value=80 Score=21.53 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=31.5
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEec-----CCCccEEEEeCCC
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPD 109 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPd 109 (120)
.+.+|-+.-.|+.++...++..||.+... ..+...+||.-.|
T Consensus 33 ~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 33 GLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 45677777789999999999999998652 2345677776554
No 223
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=42.56 E-value=65 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCe
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 112 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~ 112 (120)
|++.+.+.|++.|+++..+. ...|.++|.--+|.+
T Consensus 116 Nie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v 153 (199)
T PRK13491 116 NAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRV 153 (199)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 78999999999999998853 224666554333443
No 224
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.76 E-value=34 Score=21.85 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCeEEe--cCCCccEEEEeCCCCCe
Q 033399 81 KLKMILDKAGISYTL--SKSGRPAIFTRDPDANA 112 (120)
Q Consensus 81 ~~~~~l~~~Gv~~~~--~~~g~~~~~~~DPdGn~ 112 (120)
-+..+|+++|..++. .+.+.+.+-+-||||..
T Consensus 23 Yls~klkkkgf~v~VaateAa~kLlevaD~ek~Y 56 (148)
T COG4081 23 YLSHKLKKKGFDVTVAATEAALKLLEVADPEKYY 56 (148)
T ss_pred HHHHHhhccCccEEEecCHhhheeeeeeCcccch
Confidence 345788999988765 45667888888988754
No 225
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=40.59 E-value=64 Score=18.97 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEEEEECCHH---HHHHHHHHCCCeEEec-CCCccEEEEeCCC
Q 033399 70 RHTCIAIRDVS---KLKMILDKAGISYTLS-KSGRPAIFTRDPD 109 (120)
Q Consensus 70 ~hi~f~v~d~d---~~~~~l~~~Gv~~~~~-~~g~~~~~~~DPd 109 (120)
.|+-|.+++-+ .+.+.|++.|+++... ..+...+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESSEEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHH
Confidence 79999998743 4556777888887653 3456788888754
No 226
>PF14044 NETI: NETI protein
Probab=40.54 E-value=49 Score=17.81 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=18.1
Q ss_pred EEEC---CHHHHHHHHHHCCCeEEe
Q 033399 74 IAIR---DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 74 f~v~---d~d~~~~~l~~~Gv~~~~ 95 (120)
|.|. .+++.++|+++.|+..+.
T Consensus 2 FeV~enETI~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMPVR 26 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCcee
Confidence 5564 599999999999998765
No 227
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=39.34 E-value=88 Score=18.93 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=34.0
Q ss_pred CcceEEEEECCHHHHHHHHHHC-CCeEEe--c-------CCC------------ccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDKA-GISYTL--S-------KSG------------RPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~-Gv~~~~--~-------~~g------------~~~~~~~DPdGn~iEl~~ 117 (120)
+..-+++.+++.+++.+.+++. +.++.. . ..| .+.+|+.|++|.++....
T Consensus 56 ~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 56 GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEV 127 (140)
T ss_pred CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEe
Confidence 3567888888888877777777 655432 1 011 236899999998887643
No 228
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=39.00 E-value=37 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.5
Q ss_pred CCCccEEEEeCCCCCeEEEEe
Q 033399 97 KSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 97 ~~g~~~~~~~DPdGn~iEl~~ 117 (120)
.-|.+.+|+.|+.|+..|+..
T Consensus 25 KVG~K~Lfl~d~~g~~~e~~~ 45 (120)
T PF05301_consen 25 KVGYKKLFLLDERGQHREIEP 45 (120)
T ss_pred EEeeeeEEEEcCCCCEEEecc
Confidence 457889999999999999643
No 229
>PRK14707 hypothetical protein; Provisional
Probab=38.73 E-value=58 Score=30.40 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCeEEec---------CCCccEEEEeCCCCCeEEEE
Q 033399 79 VSKLKMILDKAGISYTLS---------KSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~---------~~g~~~~~~~DPdGn~iEl~ 116 (120)
+..+...|.++|+..+.- ....-.+.++||+|..+||-
T Consensus 2358 ~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQ 2404 (2710)
T PRK14707 2358 LRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQ 2404 (2710)
T ss_pred HHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEE
Confidence 667788999999988661 11234456799999999984
No 230
>PF09259 Fve: Fungal immunomodulatory protein Fve; InterPro: IPR015339 This entry represents the FIP-Fve (Fungal Immunomodulatory Protein Fve) is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerisation occurs by 3-D domain swapping of the N-terminal helices and is stabilised predominantly by hydrophobic interactions []. ; GO: 0030246 carbohydrate binding, 0002682 regulation of immune system process; PDB: 3KCW_A 1OSY_B 3F3H_B.
Probab=37.91 E-value=60 Score=19.34 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=8.8
Q ss_pred CccEEEEeCCC-CC
Q 033399 99 GRPAIFTRDPD-AN 111 (120)
Q Consensus 99 g~~~~~~~DPd-Gn 111 (120)
..-++|+.||| ||
T Consensus 89 ~TIQV~VvdPdtgn 102 (111)
T PF09259_consen 89 NTIQVFVVDPDTGN 102 (111)
T ss_dssp S-EEEEEE-TTTTT
T ss_pred ceEEEEEEcCCCCC
Confidence 34678999999 66
No 231
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.87 E-value=54 Score=18.11 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.3
Q ss_pred ceEEEEE--CCHHHHHHHHHHCCCeEEe
Q 033399 70 RHTCIAI--RDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 70 ~hi~f~v--~d~d~~~~~l~~~Gv~~~~ 95 (120)
--+|+.+ +|.+.+.+.|++.|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 3456665 5899999999999998754
No 232
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=37.61 E-value=29 Score=21.20 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=10.9
Q ss_pred cEEEEeCCCCCeEE
Q 033399 101 PAIFTRDPDANALE 114 (120)
Q Consensus 101 ~~~~~~DPdGn~iE 114 (120)
..+.++||||++|-
T Consensus 19 ~RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 19 TRARLYDPDGNLLA 32 (112)
T ss_pred ceEEEECCCCCEEe
Confidence 34678999999873
No 233
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=37.56 E-value=98 Score=18.98 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=32.6
Q ss_pred CcceEEEEECCHHHHHHHHHHCCC-eE--EecC---------------CC--ccEEEEeCCCCCeEEEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGI-SY--TLSK---------------SG--RPAIFTRDPDANALEFT 116 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv-~~--~~~~---------------~g--~~~~~~~DPdGn~iEl~ 116 (120)
+..-+++.+++.+...+..++.++ .+ .... .+ .+..|+.||+|.++...
T Consensus 58 ~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 58 NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 356788998887767666666664 22 1110 11 35789999999988765
No 234
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=37.38 E-value=57 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=11.9
Q ss_pred EEEECCHHHHHHHHHHCCC
Q 033399 73 CIAIRDVSKLKMILDKAGI 91 (120)
Q Consensus 73 ~f~v~d~d~~~~~l~~~Gv 91 (120)
=|.|.|.+.+.++|++.+.
T Consensus 5 K~~v~d~~~~~~~l~~l~~ 23 (169)
T cd07890 5 KARVDDLEALRERLAALGG 23 (169)
T ss_pred EEEeCCHHHHHHHHHhccc
Confidence 3566677777777766443
No 235
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=37.11 E-value=1.2e+02 Score=19.84 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEE
Q 033399 71 HTCIAIRDVSKLKMILDKAGISYT 94 (120)
Q Consensus 71 hi~f~v~d~d~~~~~l~~~Gv~~~ 94 (120)
-+.+.|+|.+.+.+.|++.|....
T Consensus 79 E~e~~v~d~~~~~~iL~~LG~~~~ 102 (174)
T TIGR00318 79 EIEFKIEDIENALQILKKLGFKKV 102 (174)
T ss_pred EEEEEECCHHHHHHHHHHCCCeEE
Confidence 477889999999999999999863
No 236
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.66 E-value=1.1e+02 Score=20.94 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 77 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
.|++.+.+.|++.|+++..+. ...|.++| +|+...+.+
T Consensus 127 rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f-~~~tG~v~v 167 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAEDLLDIYPRKVYF-FPTTGKVLV 167 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEE-ECCCCEEEE
Confidence 379999999999999998853 22456655 344333333
No 237
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=36.39 E-value=34 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=27.3
Q ss_pred ceEEEEECC------HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEee
Q 033399 70 RHTCIAIRD------VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 70 ~hi~f~v~d------~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
.|+|..+++ -+.+..+|++.|=++..-..++...| -||.|||...
T Consensus 210 e~favic~~~i~~~~R~~vir~L~~dgkeiv~is~~Q~~hF----~GN~ieL~~~ 260 (318)
T COG4874 210 EHFAVICDEAIPEYERRFVIRSLAKDGKEIVSISIEQMNHF----CGNIIELETA 260 (318)
T ss_pred hheeeeeccccccHHHHHHHHHHHhCCCeEEEeeHHHHHHh----hccceEeecc
Confidence 477777753 23456788888888876332322222 3777777654
No 238
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.89 E-value=92 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEE
Q 033399 78 DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 115 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl 115 (120)
|++.+.+.|++.|+++..+. ...|.++| +|+-..+.+
T Consensus 126 Nieaa~~~L~~~gI~IvaeDvGG~~gRkV~f-~~~TG~v~V 165 (233)
T PRK13489 126 NADFVRRYLALERIRITAEDLQGVHPRKVAF-MPRTGRAMV 165 (233)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCcEEEE-ECCCCEEEE
Confidence 79999999999999998853 22455654 444333333
No 239
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.04 E-value=80 Score=17.21 Aligned_cols=41 Identities=15% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEECC----HHHHHHHHHHCCCeEEe----cCCC--ccEEEEeCCCCCe
Q 033399 72 TCIAIRD----VSKLKMILDKAGISYTL----SKSG--RPAIFTRDPDANA 112 (120)
Q Consensus 72 i~f~v~d----~d~~~~~l~~~Gv~~~~----~~~g--~~~~~~~DPdGn~ 112 (120)
+.+.++| +..+...|.++|+.+.. +..+ .-.+++.||+|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 4555555 66777888999999965 2222 2567788998874
No 240
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=34.89 E-value=1.2e+02 Score=19.14 Aligned_cols=37 Identities=22% Similarity=0.071 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEE
Q 033399 78 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 114 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iE 114 (120)
|+...++.+.++||.--...-....+...|.+|+.|=
T Consensus 85 df~tfC~~~A~AGI~kW~vDl~~~tc~Y~d~~~~~l~ 121 (125)
T PF07166_consen 85 DFETFCKDAAKAGIFKWVVDLNEKTCTYYDKDNQLLL 121 (125)
T ss_dssp -HHHHHHHHHHTT--EEEEETTTTEEEEE-TT--EEE
T ss_pred cHHHHHHHHHhcCCEEEEEEccccEEEEEcCCCCEEE
Confidence 6788888999999865432212233444599998873
No 241
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=34.43 E-value=1.1e+02 Score=19.71 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=23.5
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEec--CCCccEEEEe
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTLS--KSGRPAIFTR 106 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~ 106 (120)
.-+++.|-|..+..+-|+.+|+.+.+. ..+...+|+.
T Consensus 36 g~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G~~fY~Y 74 (142)
T PF11633_consen 36 GLLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDGVQFYFY 74 (142)
T ss_dssp T-EEEEETT-HHHHHHHHHTTS---SEEEES-SSEEEEE
T ss_pred CcEEEEEeccHHHHHHHhccCcccccceEEecceEEEEE
Confidence 358899999999999999999999773 2223446664
No 242
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=34.40 E-value=1.1e+02 Score=18.59 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.0
Q ss_pred cEEEEeCCCCCeEEEE
Q 033399 101 PAIFTRDPDANALEFT 116 (120)
Q Consensus 101 ~~~~~~DPdGn~iEl~ 116 (120)
+..|+.||+|.++-.+
T Consensus 125 ~~~~lid~~G~i~~~~ 140 (142)
T cd02968 125 AAIYLVDPDGKLVRYY 140 (142)
T ss_pred ceEEEECCCCCEEEee
Confidence 4689999999988654
No 243
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=33.80 E-value=1.3e+02 Score=19.34 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=34.9
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCe-EE--ec--------CCC------------ccEEEEeCCCCCeEEEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGIS-YT--LS--------KSG------------RPAIFTRDPDANALEFT 116 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~-~~--~~--------~~g------------~~~~~~~DPdGn~iEl~ 116 (120)
+..-+++.+++..+..+.+++.|+. +. .. ..| .+..|+.|++|.++...
T Consensus 76 ~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 76 NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 3567899999888888888888875 21 11 011 24889999999988765
No 244
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=33.65 E-value=1.5e+02 Score=20.06 Aligned_cols=45 Identities=9% Similarity=0.284 Sum_probs=33.0
Q ss_pred EEEEE--CCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 72 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 72 i~f~v--~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
|=+-| +|++.+.+.|.+.|+...... +....|...+.|..|||..
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~~-~~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESPS-EHHWVYSHEPKGISIDLHW 143 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccCC-CcceEEEecCCCEEEEEEe
Confidence 44555 699999999999999876653 2344555558888899865
No 245
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.45 E-value=1e+02 Score=17.83 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.2
Q ss_pred EEC-CHHHHHHHHHHCCCeEEec--C---CCccEEEEeCCCCCeE
Q 033399 75 AIR-DVSKLKMILDKAGISYTLS--K---SGRPAIFTRDPDANAL 113 (120)
Q Consensus 75 ~v~-d~d~~~~~l~~~Gv~~~~~--~---~g~~~~~~~DPdGn~i 113 (120)
.|+ .+..+.+.|+++|+++..- . .+..++-+.+-|.|..
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~m 49 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMM 49 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccc
Confidence 454 5889999999999999872 2 2456666777766654
No 246
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=32.99 E-value=22 Score=24.94 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=16.4
Q ss_pred CcceEEEEECCHHHHHHHH
Q 033399 68 RDRHTCIAIRDVSKLKMIL 86 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l 86 (120)
.+.+|+|.|||+|++...+
T Consensus 132 ~YP~i~F~vD~Fde~F~~~ 150 (237)
T PF09741_consen 132 TYPNICFTVDDFDEVFDDV 150 (237)
T ss_pred ccCeEEEEecChhhhhheE
Confidence 4679999999999998765
No 247
>PRK15000 peroxidase; Provisional
Probab=32.93 E-value=90 Score=20.99 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CccEEEEeCCCCCeEEEEe
Q 033399 99 GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 99 g~~~~~~~DPdGn~iEl~~ 117 (120)
..+..|+.||+|.+.....
T Consensus 124 ~~r~tfiID~~G~I~~~~~ 142 (200)
T PRK15000 124 ALRGSFLIDANGIVRHQVV 142 (200)
T ss_pred EEeEEEEECCCCEEEEEEe
Confidence 3688899999999887654
No 248
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=32.47 E-value=57 Score=20.56 Aligned_cols=49 Identities=8% Similarity=0.210 Sum_probs=31.3
Q ss_pred cceEEEEE--------CCHHHHHHHHHH-CCCeEEe-----------cC--------C-C----ccEEEEeCCCCCeEEE
Q 033399 69 DRHTCIAI--------RDVSKLKMILDK-AGISYTL-----------SK--------S-G----RPAIFTRDPDANALEF 115 (120)
Q Consensus 69 ~~hi~f~v--------~d~d~~~~~l~~-~Gv~~~~-----------~~--------~-g----~~~~~~~DPdGn~iEl 115 (120)
..-++|.+ ++.+.+.+.+++ .|+.+.. .. . + .+..|+.||+|.++..
T Consensus 56 ~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 56 FNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred eEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 45677764 456777777765 6776521 00 0 0 1237899999999987
Q ss_pred Ee
Q 033399 116 TQ 117 (120)
Q Consensus 116 ~~ 117 (120)
..
T Consensus 136 ~~ 137 (153)
T TIGR02540 136 WR 137 (153)
T ss_pred EC
Confidence 64
No 249
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.39 E-value=30 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHCCCeE
Q 033399 78 DVSKLKMILDKAGISY 93 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~ 93 (120)
+++++.+.|+++|+++
T Consensus 76 eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 76 EIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5777888888998864
No 250
>PRK13189 peroxiredoxin; Provisional
Probab=32.06 E-value=1.7e+02 Score=20.04 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=28.9
Q ss_pred cceEEEEECCHHHHHHHHH---H-CC--CeE--Eec-------C----------CCccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILD---K-AG--ISY--TLS-------K----------SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~---~-~G--v~~--~~~-------~----------~g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++++++.....++++ + .| +.+ ... . ...+..|+.||+|.+.-+.
T Consensus 70 v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 70 TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 4578999998765444333 2 23 343 220 0 1237789999999886553
No 251
>PF03984 DUF346: Repeat of unknown function (DUF346) ; InterPro: IPR007132 This repeat was found as seven tandem copies in one protein. It is predicted to be composed of beta-strands. Thus it is likely that it forms a beta-propeller structure. It is found in association with BNR repeats, which also form a beta-propeller.
Probab=32.06 E-value=66 Score=15.99 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=10.9
Q ss_pred ccEEEEeCCCCCeEE
Q 033399 100 RPAIFTRDPDANALE 114 (120)
Q Consensus 100 ~~~~~~~DPdGn~iE 114 (120)
+..+|.+++||.++-
T Consensus 2 QqHVF~r~~dg~L~H 16 (40)
T PF03984_consen 2 QQHVFARGTDGTLHH 16 (40)
T ss_pred cceEEEECCCCCEEE
Confidence 456788888887753
No 252
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=31.84 E-value=65 Score=26.70 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHCCCeEEec--C-----------CCccEEEEeCCCCCeEEEEe
Q 033399 77 RDVSKLKMILDKAGISYTLS--K-----------SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~--~-----------~g~~~~~~~DPdGn~iEl~~ 117 (120)
+|.++++++|+++|+++... | .-.+-.+++||+|....-..
T Consensus 321 P~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~ 374 (772)
T COG1501 321 PDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADF 374 (772)
T ss_pred CCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecc
Confidence 37889999999999998651 1 11355789999988765443
No 253
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=31.81 E-value=58 Score=19.52 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=24.3
Q ss_pred EECCHHHHHHHHHHCCCeEEe--cCCCccEEEEeCCC
Q 033399 75 AIRDVSKLKMILDKAGISYTL--SKSGRPAIFTRDPD 109 (120)
Q Consensus 75 ~v~d~d~~~~~l~~~Gv~~~~--~~~g~~~~~~~DPd 109 (120)
.+++...+.+.|+++|+.+.. ...+.-.+.|.|++
T Consensus 44 ~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~ 80 (101)
T PF13721_consen 44 QLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTD 80 (101)
T ss_pred cCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 456778999999999999865 23344455566654
No 254
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=31.77 E-value=1.9e+02 Score=20.56 Aligned_cols=49 Identities=6% Similarity=-0.000 Sum_probs=30.3
Q ss_pred cceEEEEECCHHHHHHHHH----H---CCCeE--Eec-------C------C--CccEEEEeCCCCCeEEEEe
Q 033399 69 DRHTCIAIRDVSKLKMILD----K---AGISY--TLS-------K------S--GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~----~---~Gv~~--~~~-------~------~--g~~~~~~~DPdGn~iEl~~ 117 (120)
..-+++.+|+.....+..+ + .++++ ... . . ..+..|+.||+|.+.....
T Consensus 133 v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 133 VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 4679999998654333322 2 34444 221 0 1 2588899999999887753
No 255
>PHA02097 hypothetical protein
Probab=31.76 E-value=48 Score=17.45 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.9
Q ss_pred EeCCCCCeEEEE
Q 033399 105 TRDPDANALEFT 116 (120)
Q Consensus 105 ~~DPdGn~iEl~ 116 (120)
+.||+||-.|++
T Consensus 46 v~~~n~ng~~~~ 57 (59)
T PHA02097 46 VKDANYNGFELV 57 (59)
T ss_pred EecCCCCcEEEe
Confidence 678999888876
No 256
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=31.48 E-value=50 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.4
Q ss_pred ccEEEEeCCCCCeEEEEee
Q 033399 100 RPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 100 ~~~~~~~DPdGn~iEl~~~ 118 (120)
...+|+.||+|.+..++..
T Consensus 155 s~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 155 SAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp SSEEEEE-TTSEEEEEECS
T ss_pred ccEEEEEcCCCcEEEEEcc
Confidence 3578999999999987753
No 257
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=31.20 E-value=1.4e+02 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=24.3
Q ss_pred HHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEE
Q 033399 83 KMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~ 116 (120)
.+.+++.|+++.....|..++| .|+......++
T Consensus 58 ~~~~~~~gI~vvRR~SGGGAVy-hD~Gnl~~s~i 90 (338)
T PRK03822 58 TRRMEEDNVRLARRSSGGGAVF-HDLGNTCFTFM 90 (338)
T ss_pred HHHHHHcCCcEEEECCCCceEE-EcCCCcEEEEE
Confidence 5778999999999888888887 68843334443
No 258
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.19 E-value=1.1e+02 Score=17.45 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.2
Q ss_pred cceEEEEEC--CHHHHHHHHHHCCCeEEe
Q 033399 69 DRHTCIAIR--DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~hi~f~v~--d~d~~~~~l~~~Gv~~~~ 95 (120)
...++++|. +++++.++|++.|+.+..
T Consensus 42 ~vlvGi~~~~~~~~~l~~~l~~~g~~~~d 70 (81)
T cd04907 42 RVLVGIQVPDADLDELKERLDALGYPYQE 70 (81)
T ss_pred eEEEEEEeChHHHHHHHHHHHHcCCCeEE
Confidence 357888886 578899999999999866
No 259
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=31.05 E-value=61 Score=23.53 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHCCCeEEe
Q 033399 78 DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~ 95 (120)
+++.+++|+++.|+....
T Consensus 18 nl~~l~~ri~~~~~~tV~ 35 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVY 35 (294)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 689999999999997654
No 260
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=30.82 E-value=1.3e+02 Score=18.25 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=25.4
Q ss_pred cceEEEEEC---CHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeE
Q 033399 69 DRHTCIAIR---DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 113 (120)
Q Consensus 69 ~~hi~f~v~---d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~i 113 (120)
..-+-|.|+ |+.++.++|.+.++ - -+...+.+-+.||.+.-|
T Consensus 54 Le~Lkf~V~~~~Dl~~L~~~le~~~~--f-idKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 54 LEMLKFQVPKDFDLAALKSHLEEQEF--F-IDKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp EEEEEEEES-S--HHHHHHHTTTS-E--E---TT-SEEEEE-TTS-EE
T ss_pred eEEEEEEecCcccHHHHHHHhcccce--E-ecCCceEEEEECCcceEE
Confidence 467888998 67788899988322 2 223356777899987543
No 261
>PRK13190 putative peroxiredoxin; Provisional
Probab=30.77 E-value=84 Score=21.10 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=29.7
Q ss_pred cceEEEEECCHHHHHHH---HH-HCCC--eE--Eec-------CC---------CccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMI---LD-KAGI--SY--TLS-------KS---------GRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~---l~-~~Gv--~~--~~~-------~~---------g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++.+++.+.-.+. +. +.|+ ++ ... .. ..+..|+.||+|.+....
T Consensus 62 ~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 62 VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 46789999987653333 32 3453 33 221 01 258899999999877554
No 262
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=30.71 E-value=1.3e+02 Score=19.72 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=24.2
Q ss_pred CcceEEEEEC--CHHHHHHHHHHCCCeEEe
Q 033399 68 RDRHTCIAIR--DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 68 ~~~hi~f~v~--d~d~~~~~l~~~Gv~~~~ 95 (120)
...++++... |+..+..+|+++|.++..
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETIV 134 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEEE
Confidence 4689999886 688999999999999865
No 263
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=30.66 E-value=55 Score=16.40 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.6
Q ss_pred EEEEeCCCCCeEE
Q 033399 102 AIFTRDPDANALE 114 (120)
Q Consensus 102 ~~~~~DPdGn~iE 114 (120)
-++..|++|+.|.
T Consensus 3 ~V~~~d~~~~~i~ 15 (53)
T smart00497 3 PVYVYDLDGNLIG 15 (53)
T ss_pred cEEEEeCCCCEEE
Confidence 4678899999984
No 264
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.57 E-value=1.3e+02 Score=17.94 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHCCCeEEec
Q 033399 77 RDVSKLKMILDKAGISYTLS 96 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~ 96 (120)
+|.|.+.+-|.++|+.+...
T Consensus 12 ~~~dri~~~l~e~g~~v~~e 31 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEE 31 (96)
T ss_pred CCHHHHHHHHHHhCeeEeec
Confidence 58899999999999888764
No 265
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=29.42 E-value=53 Score=23.86 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=32.5
Q ss_pred eEEEEEC-CHHHHHHHHHHCCCeEEecC---CCccEEEEeCCCCCeEEEEe
Q 033399 71 HTCIAIR-DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 71 hi~f~v~-d~d~~~~~l~~~Gv~~~~~~---~g~~~~~~~DPdGn~iEl~~ 117 (120)
-|+.+|+ ++..+.+-|+...-.|...+ ...++.-|+.++|+.+|+..
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~fqn~~~y~VefLT 210 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAFQNRDGYRVEFLT 210 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCCCccceeeecCCCeEEEEec
Confidence 3556665 47888888887777776532 22334445999999999976
No 266
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.37 E-value=18 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.2
Q ss_pred hhhhhh-hccCceEe
Q 033399 13 NKHQRF-NLLGLEIN 26 (120)
Q Consensus 13 ~~~fy~-~vLG~~~~ 26 (120)
+++||| +++|++-.
T Consensus 169 S~SWYFLnvfGLrsi 183 (246)
T KOG3188|consen 169 SASWYFLNVFGLRSI 183 (246)
T ss_pred hhHHHHHHHhhhHHH
Confidence 578999 99999984
No 267
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=29.29 E-value=12 Score=25.50 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=7.7
Q ss_pred cceeeccchhh
Q 033399 2 LYKYKRKKREI 12 (120)
Q Consensus 2 ~~~~~~~~~~~ 12 (120)
||.|||+..=.
T Consensus 20 LYRWKRKnLIP 30 (199)
T PF13171_consen 20 LYRWKRKNLIP 30 (199)
T ss_pred HHHHHHcCCCc
Confidence 78888876533
No 268
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=29.06 E-value=61 Score=16.07 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=13.9
Q ss_pred cEEEEeCCCCCeEEEEeeCC
Q 033399 101 PAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 101 ~~~~~~DPdGn~iEl~~~~~ 120 (120)
..+++.|++-+.++..+.+|
T Consensus 30 ~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 30 NDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ceeEEEECCCCEEeecCCCC
Confidence 45667778777777776655
No 269
>PHA02087 hypothetical protein
Probab=28.33 E-value=63 Score=18.11 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=15.4
Q ss_pred ccEEEEeCCCCCeEEEEeeCC
Q 033399 100 RPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 100 ~~~~~~~DPdGn~iEl~~~~~ 120 (120)
.....+.|.||..|||-+..|
T Consensus 44 ~v~y~lvdsdg~~ielpe~~g 64 (83)
T PHA02087 44 LVQYMLVDSDGVKIELPESEG 64 (83)
T ss_pred ceeEEEEcCCCcEEECCcccC
Confidence 344557899999999976543
No 270
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=56 Score=22.25 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=27.8
Q ss_pred cceEEEEECCHHHHH---HHHHH-CCC---eE--Ee--------------cCCC--ccEEEEeCCCCCeE
Q 033399 69 DRHTCIAIRDVSKLK---MILDK-AGI---SY--TL--------------SKSG--RPAIFTRDPDANAL 113 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~---~~l~~-~Gv---~~--~~--------------~~~g--~~~~~~~DPdGn~i 113 (120)
..-++++||+...-. +..++ .|+ ++ .. +..| .|..|+.||+|.+=
T Consensus 68 ~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir 137 (194)
T COG0450 68 VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR 137 (194)
T ss_pred CEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence 467999999876544 44433 443 22 21 0123 58999999999653
No 271
>PRK03094 hypothetical protein; Provisional
Probab=27.98 E-value=1.3e+02 Score=17.41 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHCCCeEEec-----CCCccEEEEeCCCCCeEE
Q 033399 78 DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALE 114 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~~-----~~g~~~~~~~DPdGn~iE 114 (120)
++..+.+.|+++|+++..- ..+.-++-+..-|.|..-
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mg 50 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMG 50 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceec
Confidence 6888999999999999752 134556666777666554
No 272
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=27.86 E-value=1.8e+02 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEe
Q 033399 83 KMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~ 117 (120)
.+.+++.|+++.....|..++| .|+....+.++.
T Consensus 57 ~~~~~~~gi~vvRR~sGGGaVy-hD~g~l~~s~i~ 90 (324)
T TIGR00545 57 LKELEEDNVNLFRRFSGGGAVF-HDLGNICFSFIT 90 (324)
T ss_pred HHHHHHcCCeEEEECCCCceEE-EcCCceEEEEEE
Confidence 4688999999999887777776 588655555543
No 273
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=27.73 E-value=70 Score=26.06 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHCCCeEEe
Q 033399 78 DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~ 95 (120)
+++.+++|+++.|+..+.
T Consensus 335 nl~~l~~ri~~~~~~~Vy 352 (672)
T PRK14581 335 NLDKLVQRISDLRVTHVF 352 (672)
T ss_pred hHHHHHHHHHhcCCCEEE
Confidence 588889999999887654
No 274
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.48 E-value=79 Score=19.87 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHCCCeEEec--CCCccEEEEeCCC
Q 033399 77 RDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPD 109 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~--~~g~~~~~~~DPd 109 (120)
.+...+.+.|+++|+.+... ..+.-.+-|.+||
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~ 84 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPE 84 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 88999999999999998652 2333444455553
No 275
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=27.26 E-value=1.3e+02 Score=19.40 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCeEEecCCCc
Q 033399 79 VSKLKMILDKAGISYTLSKSGR 100 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~ 100 (120)
+..+.++|++.|+++...+.|+
T Consensus 97 L~~le~~L~~~g~eV~raPFGw 118 (138)
T PF08915_consen 97 LKKLEERLKSRGFEVYRAPFGW 118 (138)
T ss_dssp HHHHHHHHHHTT-EEEE--TTE
T ss_pred HHHHHHHHHhCCCeEEEeCCcc
Confidence 5677789999999999988775
No 276
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=27.03 E-value=2e+02 Score=20.13 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEe---cCCCccEEEEeCCCCCeEEEE
Q 033399 80 SKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 80 d~~~~~l~~~Gv~~~~---~~~g~~~~~~~DPdGn~iEl~ 116 (120)
+.+.+.|++.|+.... .......+++.|++|....+.
T Consensus 64 ~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~ 103 (303)
T TIGR03168 64 EFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELN 103 (303)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEe
Confidence 4577899999998754 222335677788999877664
No 277
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=26.52 E-value=39 Score=24.21 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=14.2
Q ss_pred CccEEEEeCCCCCeEEEE
Q 033399 99 GRPAIFTRDPDANALEFT 116 (120)
Q Consensus 99 g~~~~~~~DPdGn~iEl~ 116 (120)
..-.+|+.||+|+.++.+
T Consensus 241 HSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 241 HSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred eeEEEEEECCCcceehhh
Confidence 346799999999988653
No 278
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=54 Score=22.46 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=10.9
Q ss_pred cEEEEeCCCCCeEE
Q 033399 101 PAIFTRDPDANALE 114 (120)
Q Consensus 101 ~~~~~~DPdGn~iE 114 (120)
--+.+.||||..|-
T Consensus 61 VD~~I~aPdgkvI~ 74 (209)
T KOG1693|consen 61 VDYDIEAPDGKVIY 74 (209)
T ss_pred eEEEEECCCCCEEe
Confidence 44778999998874
No 279
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=26.47 E-value=45 Score=19.30 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.1
Q ss_pred ccEEEEeCCCCCeEEE
Q 033399 100 RPAIFTRDPDANALEF 115 (120)
Q Consensus 100 ~~~~~~~DPdGn~iEl 115 (120)
.-.+.+.||+|+.+.-
T Consensus 37 ~~~v~i~dp~g~~v~~ 52 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFR 52 (99)
T ss_dssp EEEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 4567889999988754
No 280
>PRK10658 putative alpha-glucosidase; Provisional
Probab=26.46 E-value=1.1e+02 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHCCCeEEec--C----------CC-ccEEEEeCCCCCeEEE
Q 033399 77 RDVSKLKMILDKAGISYTLS--K----------SG-RPAIFTRDPDANALEF 115 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~--~----------~g-~~~~~~~DPdGn~iEl 115 (120)
+|.++++++|+++|+++..- + .+ .+-.++++++|.....
T Consensus 325 Pdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~ 376 (665)
T PRK10658 325 PDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQW 376 (665)
T ss_pred CCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeee
Confidence 37899999999999998651 1 01 2446789999987654
No 281
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=26.44 E-value=1e+02 Score=22.61 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.9
Q ss_pred ECCHHHHHHHHHHCCCeEEe
Q 033399 76 IRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~ 95 (120)
+.|++++++.|+++|+-++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEE
Confidence 58999999999999998765
No 282
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=26.44 E-value=1.2e+02 Score=16.45 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=18.4
Q ss_pred EEEEEC----CHHHHHHHHHHCCCeEEe
Q 033399 72 TCIAIR----DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 72 i~f~v~----d~d~~~~~l~~~Gv~~~~ 95 (120)
+.|.++ .+..+++.++++|+.+..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~ 29 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTK 29 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEE
Confidence 345554 378889999999999866
No 283
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=25.46 E-value=1.1e+02 Score=15.61 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCeEEecCCCc
Q 033399 79 VSKLKMILDKAGISYTLSKSGR 100 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~ 100 (120)
-...++.|+++|+.+...+.|.
T Consensus 17 ~~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 17 PSKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred HHHHHHHHHHCCCeeEECCCCC
Confidence 3456788999999887765553
No 284
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=25.18 E-value=51 Score=20.03 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.9
Q ss_pred ccEEEEeCCCCCeEE-EEe
Q 033399 100 RPAIFTRDPDANALE-FTQ 117 (120)
Q Consensus 100 ~~~~~~~DPdGn~iE-l~~ 117 (120)
..+++|.||+|..+. +++
T Consensus 77 vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 77 IPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred cceEEEECCCCCCchhhcc
Confidence 567888999999887 444
No 285
>PHA01735 hypothetical protein
Probab=24.91 E-value=64 Score=18.15 Aligned_cols=19 Identities=16% Similarity=0.024 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHCCCeEEe
Q 033399 77 RDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~ 95 (120)
.|+.+++++|++++|.-..
T Consensus 33 aDL~AA~d~Lk~NdItgv~ 51 (76)
T PHA01735 33 ADLRAACDWLKSNDITGVA 51 (76)
T ss_pred HHHHHHHHHHHHCCCceee
Confidence 4899999999999997655
No 286
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=24.85 E-value=65 Score=21.79 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=24.6
Q ss_pred ECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEeeCC
Q 033399 76 IRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVDG 120 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~~~~ 120 (120)
+.|.|-++.-....|-....-..|--.+|+.||.|++.-|.+.-|
T Consensus 77 ~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~kng~L~l~Tds~G 121 (201)
T PF09147_consen 77 LNDAELLYTIFTRLGNSALSLAEGDFCFFIEDKNGELTLITDSRG 121 (201)
T ss_dssp --HHHHHHHHHHHH-GGGGGG--SSEEEEEEETTSEEEEEE-SSS
T ss_pred eccHHHHHHHHHHhhhhhhhhhcCceEEEEecCCCcEEEEecCCC
Confidence 345555554444445444333456677888899998877766543
No 287
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=24.78 E-value=1.7e+02 Score=17.68 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=22.4
Q ss_pred cce-EEEEECCHHHHHHHHHHCCCeEEe
Q 033399 69 DRH-TCIAIRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 69 ~~h-i~f~v~d~d~~~~~l~~~Gv~~~~ 95 (120)
..+ +.+.-++.|++++.++++|+.+..
T Consensus 47 ~~q~v~l~F~skE~Ai~yaer~G~~Y~V 74 (101)
T PF04800_consen 47 LSQSVRLKFDSKEDAIAYAERNGWDYEV 74 (101)
T ss_dssp EEE-CEEEESSHHHHHHHHHHCT-EEEE
T ss_pred hhCeeEeeeCCHHHHHHHHHHcCCeEEE
Confidence 455 788889999999999999999865
No 288
>PRK09732 hypothetical protein; Provisional
Probab=24.65 E-value=1.9e+02 Score=18.30 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEeeC
Q 033399 79 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
++++.++.++.|+++ ++-+-|+.||++-+.-.+
T Consensus 16 ~~aA~~~A~~~g~~v--------~iaVvD~~G~l~a~~RmD 48 (134)
T PRK09732 16 IAAGQEEAQKNNWSV--------SIAVADDGGHLLALSRMD 48 (134)
T ss_pred HHHHHHHHHHhCCCE--------EEEEEcCCCCEEEEEEcC
Confidence 455566667776654 344566666666555443
No 289
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=24.57 E-value=55 Score=17.36 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=16.4
Q ss_pred HHCCCeEEecCCCccEEEEeCCCCCeE
Q 033399 87 DKAGISYTLSKSGRPAIFTRDPDANAL 113 (120)
Q Consensus 87 ~~~Gv~~~~~~~g~~~~~~~DPdGn~i 113 (120)
....+.+...+.....+|+.|++| .|
T Consensus 34 ~g~~V~vryDp~dl~~i~V~~~~g-~i 59 (62)
T PF09299_consen 34 IGQKVRVRYDPDDLSRIYVYDEDG-FI 59 (62)
T ss_dssp S-SEEEEEE-GGGTTEEEEEETTS-EE
T ss_pred cCCEEEEEECcccCCEEEEEECCc-EE
Confidence 344455555555567899999999 44
No 290
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=24.39 E-value=1.8e+02 Score=18.08 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=18.2
Q ss_pred CCcceEEEEEC-CHHHHHHHHHHCCCeEE
Q 033399 67 GRDRHTCIAIR-DVSKLKMILDKAGISYT 94 (120)
Q Consensus 67 ~~~~hi~f~v~-d~d~~~~~l~~~Gv~~~ 94 (120)
|+-||-+|+.. +.+.+....+-.|+++.
T Consensus 85 GGaHHtv~s~~~t~e~~~d~A~~~giE~v 113 (115)
T PF11762_consen 85 GGAHHTVFSTAVTAEQLEDFAEMAGIELV 113 (115)
T ss_dssp T--SEEEEESS--HHHHHHHHHHTT-EEE
T ss_pred CCCccEEEEccCCHHHHHHHHHHhCCEEE
Confidence 56689999887 57777777777777764
No 291
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=24.29 E-value=5e+02 Score=23.77 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=35.0
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEEee
Q 033399 70 RHTCIAIRD----VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 70 ~hi~f~v~d----~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
..|-+.++| +|.+...|.+.|+.+.......- ---+|++|.++++...
T Consensus 18 TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl-~V~RD~~G~L~~v~~~ 69 (1528)
T PF05088_consen 18 TVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVL-NVERDADGKLVAVGPA 69 (1528)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcE-EEEECCCCcEEEecCC
Confidence 345666677 89999999999999977433222 2247899999988753
No 292
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=24.11 E-value=1.4e+02 Score=16.57 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEE
Q 033399 79 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl 115 (120)
..++.+.|++.|....... |... .++.|||+++-+
T Consensus 9 ~ke~ik~Le~~Gf~~vrqk-GSH~-q~kHp~~~~vtV 43 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQK-GSHR-QYKHPDGGRVTV 43 (66)
T ss_pred HHHHHHHHHhCCcEEEEee-ccee-EEEcCCCCEEEe
Confidence 5678889999999887754 3333 357888887755
No 293
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=24.00 E-value=2.4e+02 Score=19.13 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=27.7
Q ss_pred ECCHHHHHHHHHHCCCeEEe---cC------CCccEEEEeCCCCCeEEEEee
Q 033399 76 IRDVSKLKMILDKAGISYTL---SK------SGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~---~~------~g~~~~~~~DPdGn~iEl~~~ 118 (120)
..+.+...+-.++.++.... .. .....+|+.||+|..+-.+..
T Consensus 138 tg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 138 TGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred eCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence 33466666666677766522 11 224678999999999887654
No 294
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=23.84 E-value=1.3e+02 Score=16.95 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=14.2
Q ss_pred CCCccEEEEeCCCCCeEEEEeeC
Q 033399 97 KSGRPAIFTRDPDANALEFTQVD 119 (120)
Q Consensus 97 ~~g~~~~~~~DPdGn~iEl~~~~ 119 (120)
..|.-.+.+.-|+|..+.|....
T Consensus 14 ~~gdL~i~L~SP~Gt~~~L~~~~ 36 (87)
T PF01483_consen 14 YRGDLRITLISPSGTRSTLKDRR 36 (87)
T ss_dssp SGGGEEEEEE-TT--EEEEE-SS
T ss_pred CcCCEEEEEECCCCCEEEEECCc
Confidence 34567788889999998887654
No 295
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=23.72 E-value=1.7e+02 Score=19.61 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeEEE
Q 033399 79 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 115 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl 115 (120)
.+++.+-|++.|+.+... ..|.+++.+++++ +++
T Consensus 11 ~~~t~~ll~~aG~~~~~~--~~R~l~~~~~~~~-i~~ 44 (182)
T TIGR00070 11 LEDTLKLLEKAGLKVSRE--DSRKLIARDPDEG-IEF 44 (182)
T ss_pred HHHHHHHHHHcCCCCCCC--CCcceEeEcCCCC-EEE
Confidence 678899999999987663 2355666776633 444
No 296
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=23.57 E-value=1.9e+02 Score=17.73 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=34.1
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEe--cC---------CC---------ccEEEEeCCCCCeEEEE
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTL--SK---------SG---------RPAIFTRDPDANALEFT 116 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~--~~---------~g---------~~~~~~~DPdGn~iEl~ 116 (120)
+..-+++.+++.+++.+.+++.++.+.. .. .+ .+..|+.|++|.++-..
T Consensus 62 ~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 62 GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 3567888888888888888888877643 10 11 12678999999877654
No 297
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=23.50 E-value=1.1e+02 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.5
Q ss_pred EEEEeCCCCCeEEEE
Q 033399 102 AIFTRDPDANALEFT 116 (120)
Q Consensus 102 ~~~~~DPdGn~iEl~ 116 (120)
..|+.||+|.++...
T Consensus 125 ttflId~~G~i~~~~ 139 (152)
T cd00340 125 TKFLVDRDGEVVKRF 139 (152)
T ss_pred EEEEECCCCcEEEEE
Confidence 578999999998754
No 298
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=23.12 E-value=1.8e+02 Score=17.34 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=31.3
Q ss_pred cceEEEEEC-CHHHHHHHHHHCCCeEE---e----------cCCCccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIR-DVSKLKMILDKAGISYT---L----------SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~-d~d~~~~~l~~~Gv~~~---~----------~~~g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++.++ +.+++.+.+++.++.+. . ...+....|+.|++|+++...
T Consensus 56 ~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 56 VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 455666654 56677777777777542 1 113446688999999988654
No 299
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=23.04 E-value=1.2e+02 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=27.8
Q ss_pred EEEECCHHHHHHHHHHCCCeEEe---cCCCccEEEEeCCCCCe
Q 033399 73 CIAIRDVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANA 112 (120)
Q Consensus 73 ~f~v~d~d~~~~~l~~~Gv~~~~---~~~g~~~~~~~DPdGn~ 112 (120)
.-+++++.-+...++........ .......+|+.+|+|++
T Consensus 230 VsR~pSl~~l~~~~~~~~~~~~~~~~~~~~~~~~yvlNP~gDL 272 (383)
T PF03568_consen 230 VSRMPSLHFLRDLLKRHSNSRSPGYESKDPKRGFYVLNPSGDL 272 (383)
T ss_pred eEecChHHHHHHHHHHhhhhcccccccccccceEEEECCCCCH
Confidence 45688999888888775444332 12223589999999985
No 300
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.89 E-value=1.5e+02 Score=16.40 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCeEEe----c-CCC--ccEEEEeCCCCC
Q 033399 79 VSKLKMILDKAGISYTL----S-KSG--RPAIFTRDPDAN 111 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~----~-~~g--~~~~~~~DPdGn 111 (120)
+..+..-|.+.|+.+.. . ..+ .-.||+.||+|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 56777888999999966 1 333 367899999877
No 301
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=22.73 E-value=1.7e+02 Score=21.01 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHCCCeEEec--CCC-ccEEEEeCCC
Q 033399 77 RDVSKLKMILDKAGISYTLS--KSG-RPAIFTRDPD 109 (120)
Q Consensus 77 ~d~d~~~~~l~~~Gv~~~~~--~~g-~~~~~~~DPd 109 (120)
+-.+++++.|.++|+++..- ..+ ..++|.+||.
T Consensus 38 aQh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~ 73 (267)
T COG1834 38 AQHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEcCcccCCCcceEeccce
Confidence 34567788899999999772 222 5688999985
No 302
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=22.66 E-value=2.7e+02 Score=19.35 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCeEEe---cCCCccEEEEeCCCCCeEEEE
Q 033399 79 VSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~---~~~g~~~~~~~DPdGn~iEl~ 116 (120)
-+.+.+.|++.|+.... .......+.+.|++|....+.
T Consensus 63 g~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~ 103 (304)
T TIGR03828 63 GDFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLN 103 (304)
T ss_pred hHHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEE
Confidence 34678899999998654 222234566778888766554
No 303
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=22.66 E-value=12 Score=21.76 Aligned_cols=8 Identities=25% Similarity=0.683 Sum_probs=4.0
Q ss_pred Ccceeecc
Q 033399 1 MLYKYKRK 8 (120)
Q Consensus 1 ~~~~~~~~ 8 (120)
||++||.+
T Consensus 48 mL~~W~~r 55 (83)
T cd08319 48 ALVKWRQR 55 (83)
T ss_pred HHHHHHHh
Confidence 45555543
No 304
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=22.60 E-value=1.7e+02 Score=20.23 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCeEEecCCCccEEEEeCCCCC
Q 033399 79 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDAN 111 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn 111 (120)
.+++.+-|++.|+.+.......|...+.+++++
T Consensus 14 ~e~t~~ll~~aG~~~~~~~~~~R~L~~~~~~~~ 46 (215)
T PRK01686 14 LEETLPLLAKAGIDPSEDPDKSRKLIFPTPEPD 46 (215)
T ss_pred HHHHHHHHHHcCCCcccCCCCCcceEeecCCCC
Confidence 678899999999988775434466666666543
No 305
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=22.39 E-value=67 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.4
Q ss_pred CccEEEEeCCCCCe
Q 033399 99 GRPAIFTRDPDANA 112 (120)
Q Consensus 99 g~~~~~~~DPdGn~ 112 (120)
...++|+.+|||+.
T Consensus 142 DSEsfyminPdg~~ 155 (166)
T PF04759_consen 142 DSESFYMINPDGNG 155 (166)
T ss_pred CcceeEEECCCCCC
Confidence 35789999999874
No 306
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=22.14 E-value=1.2e+02 Score=19.21 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEecCCC
Q 033399 79 VSKLKMILDKAGISYTLSKSG 99 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~~g 99 (120)
-|.+.+.|.+.|+.+...+.|
T Consensus 131 AD~IRd~L~~~Gi~i~Dt~~G 151 (156)
T cd07963 131 ADRIRDELAAQGIILEDSPEG 151 (156)
T ss_pred HHHHHHHHHHCCcEEEECCCC
Confidence 567889999999999887655
No 307
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.10 E-value=88 Score=15.70 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.2
Q ss_pred ECCHHHHHHHHHHCCCeEEe
Q 033399 76 IRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~ 95 (120)
+.+.+++++-.++.|+.|+.
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~ 45 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTE 45 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCH
Confidence 45788888888999988864
No 308
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.03 E-value=2.2e+02 Score=21.08 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=30.4
Q ss_pred ECCHHHHHHHHHHCCCeEEec-CCCccEEEEeCCCCCeEEEEee
Q 033399 76 IRDVSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQV 118 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~~~-~~g~~~~~~~DPdGn~iEl~~~ 118 (120)
+-+.+.+.+.+.+.+...... ..+.+..|+..|+|..|+++.+
T Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~ig~I~p 245 (322)
T COG2896 202 YLSLDEILRKLEERATLLPVRKRLHGRAKYFIHPDGGEIGFIAP 245 (322)
T ss_pred cccHHHHHHHHHhhccccccccccCCCceEEEeCCCcEEEEEcC
Confidence 346888888888854443333 4556778899999888888764
No 309
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=22.01 E-value=1.4e+02 Score=15.56 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHCCCeEEe
Q 033399 78 DVSKLKMILDKAGISYTL 95 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~ 95 (120)
+++++.+.|++.|+.+..
T Consensus 10 ~~~~a~~~l~~~g~~~~~ 27 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTVNV 27 (63)
T ss_dssp BHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHCCCEEEE
Confidence 588999999999997643
No 310
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=21.95 E-value=84 Score=17.04 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=8.1
Q ss_pred CCccEEEEeCCC-CCeEE
Q 033399 98 SGRPAIFTRDPD-ANALE 114 (120)
Q Consensus 98 ~g~~~~~~~DPd-Gn~iE 114 (120)
.|.....|+||+ |..+.
T Consensus 35 kGV~igLFk~P~tGk~fR 52 (60)
T PF11520_consen 35 KGVKIGLFKDPETGKYFR 52 (60)
T ss_dssp --EEEEEEE-TTT--EEE
T ss_pred CceEEEEEeCCCCCcchh
Confidence 355666778888 76553
No 311
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=21.84 E-value=29 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=13.7
Q ss_pred EEEECCHHHHHHHHHHCCCeEEe
Q 033399 73 CIAIRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 73 ~f~v~d~d~~~~~l~~~Gv~~~~ 95 (120)
.+..+.++.++..|.+.||.+..
T Consensus 35 ~~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 35 DLDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp ---HHHHHHHHHHHHTT----B-
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 35666799999999999999977
No 312
>PRK11899 prephenate dehydratase; Provisional
Probab=21.76 E-value=2.7e+02 Score=20.00 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=29.9
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEe---cC---CCccEEEEeCCCCC
Q 033399 70 RHTCIAIRD----VSKLKMILDKAGISYTL---SK---SGRPAIFTRDPDAN 111 (120)
Q Consensus 70 ~hi~f~v~d----~d~~~~~l~~~Gv~~~~---~~---~g~~~~~~~DPdGn 111 (120)
.-+.|.++| +-.++..++.+|+.++. .| .-+..+|+.|=+|+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 467888875 77888999999999866 22 22455666777775
No 313
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.76 E-value=1.5e+02 Score=17.18 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=14.5
Q ss_pred CCccEEEEeCCCCCeEEEE
Q 033399 98 SGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 98 ~g~~~~~~~DPdGn~iEl~ 116 (120)
.|.-.++|.|++|..+..+
T Consensus 81 ~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp -SSSEEEECTTTSCEEEEE
T ss_pred CccCEEEEEcCCCCEEEEe
Confidence 4567888999999988643
No 314
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=21.56 E-value=3.1e+02 Score=21.07 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCeEEecC------CCccEEEEeCCCCCeEE
Q 033399 79 VSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALE 114 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~~------~g~~~~~~~DPdGn~iE 114 (120)
++.+..+|++.||++.... .....+.+..|+|-.|+
T Consensus 114 v~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~ 155 (408)
T COG2081 114 VDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK 155 (408)
T ss_pred HHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence 8899999999999997631 11245777888886443
No 315
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=21.53 E-value=1.8e+02 Score=16.81 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=26.4
Q ss_pred EEEEECCHHHHHHHHHHCCCe-E--Eec--------CCCccEEEEeCCCCCeE
Q 033399 72 TCIAIRDVSKLKMILDKAGIS-Y--TLS--------KSGRPAIFTRDPDANAL 113 (120)
Q Consensus 72 i~f~v~d~d~~~~~l~~~Gv~-~--~~~--------~~g~~~~~~~DPdGn~i 113 (120)
++..-++.++..+.+++.++. + ... ..+....|+.|++|.++
T Consensus 57 i~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~vid~~G~v~ 109 (114)
T cd02967 57 VLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAVLLDEAGVIA 109 (114)
T ss_pred EEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEEEECCCCeEE
Confidence 333334677777777777763 2 211 23457789999999765
No 316
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=21.33 E-value=71 Score=21.01 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=10.5
Q ss_pred ccEEEEeCCCCC
Q 033399 100 RPAIFTRDPDAN 111 (120)
Q Consensus 100 ~~~~~~~DPdGn 111 (120)
..++|+.+||||
T Consensus 138 SEsfyminPdg~ 149 (161)
T TIGR01570 138 SESFYMINPEGN 149 (161)
T ss_pred ceeEEeECCCCC
Confidence 578999999987
No 317
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=21.25 E-value=2.1e+02 Score=17.48 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=34.7
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEe---c---------CC---------CccEEEEeCCCCCeEEEEe
Q 033399 68 RDRHTCIAIRDVSKLKMILDKAGISYTL---S---------KS---------GRPAIFTRDPDANALEFTQ 117 (120)
Q Consensus 68 ~~~hi~f~v~d~d~~~~~l~~~Gv~~~~---~---------~~---------g~~~~~~~DPdGn~iEl~~ 117 (120)
++.-+++.+++-..+.+.+++.++.+.. . .. +....++.|++|+++....
T Consensus 62 ~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 62 GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 3456778887666677777777766533 1 12 5567889999999887654
No 318
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=20.96 E-value=2.6e+02 Score=22.46 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHHCCCeEEecCCCccEEEEeCCCCCeEEEE
Q 033399 83 KMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 116 (120)
Q Consensus 83 ~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~iEl~ 116 (120)
.+.+++.|+++.....|..++| .|+.+.-+.++
T Consensus 282 l~~~~~~gI~vVRR~SGGGAVY-HD~GNlnfSfi 314 (562)
T PRK14061 282 TRRMEEDNVRLARRSSGGGAVF-HDLGNTCFTFM 314 (562)
T ss_pred HHHHHhcCCcEEEECCCCcEEE-EcCCceEEEEE
Confidence 5688999999999887777787 57755445554
No 319
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=20.88 E-value=1e+02 Score=16.01 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=16.9
Q ss_pred cceEEEEEC-CHHHHHHHHHHC
Q 033399 69 DRHTCIAIR-DVSKLKMILDKA 89 (120)
Q Consensus 69 ~~hi~f~v~-d~d~~~~~l~~~ 89 (120)
.+.+.|.|. +++++..++++.
T Consensus 5 ~Hd~~fvVa~s~~ea~~~~k~~ 26 (52)
T PF07566_consen 5 QHDVRFVVAESIEEAKPKAKQR 26 (52)
T ss_dssp EECEEEEEESSCHHHHHHHHCC
T ss_pred eeeeEEEEECCHHHHHHHHHHh
Confidence 467888885 799999998765
No 320
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.88 E-value=1.6e+02 Score=15.93 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCeEEec-----CCC--ccEEEEeCCCCCeE
Q 033399 79 VSKLKMILDKAGISYTLS-----KSG--RPAIFTRDPDANAL 113 (120)
Q Consensus 79 ~d~~~~~l~~~Gv~~~~~-----~~g--~~~~~~~DPdGn~i 113 (120)
+..+..-|...|+.+... ..+ .-.|++.||+|..+
T Consensus 15 l~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 15 FARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred HHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 556777889999998762 123 36788899998754
No 321
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.76 E-value=1.3e+02 Score=18.55 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=16.7
Q ss_pred ECCHHHHHHHHHHCCCeEE
Q 033399 76 IRDVSKLKMILDKAGISYT 94 (120)
Q Consensus 76 v~d~d~~~~~l~~~Gv~~~ 94 (120)
++++++++++|.+.|++-.
T Consensus 55 ~p~~~eaL~~l~~~G~~~V 73 (127)
T cd03412 55 VDTPEEALAKLAADGYTEV 73 (127)
T ss_pred CCCHHHHHHHHHHCCCCEE
Confidence 7899999999999998753
No 322
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=20.70 E-value=1.7e+02 Score=16.07 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHCCCeEEe---cC---CCccEEEEeCCCC
Q 033399 78 DVSKLKMILDKAGISYTL---SK---SGRPAIFTRDPDA 110 (120)
Q Consensus 78 d~d~~~~~l~~~Gv~~~~---~~---~g~~~~~~~DPdG 110 (120)
.+-.+++.++++|+.++. .| ......|+.|=+|
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 477888999999999876 22 2234455556554
No 323
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=20.68 E-value=2.4e+02 Score=18.48 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=29.4
Q ss_pred cceEEEEECCHHHHHHHHHH----CCCeE--Eec-------CC---------CccEEEEeCCCCCeEEEE
Q 033399 69 DRHTCIAIRDVSKLKMILDK----AGISY--TLS-------KS---------GRPAIFTRDPDANALEFT 116 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~----~Gv~~--~~~-------~~---------g~~~~~~~DPdGn~iEl~ 116 (120)
..-+++.+++.+...+..+. .++++ ... .. ..+..|+.|++|.+....
T Consensus 66 v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 66 VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 46788998886554433322 24443 221 01 237889999999988765
No 324
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=20.56 E-value=2.8e+02 Score=18.65 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.6
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEe
Q 033399 70 RHTCIAIRDVSKLKMILDKAGISYTL 95 (120)
Q Consensus 70 ~hi~f~v~d~d~~~~~l~~~Gv~~~~ 95 (120)
.-+-+.|+|+..+.+-|+..|.....
T Consensus 79 ~E~E~~v~D~~~~~~il~~LGF~~~~ 104 (178)
T COG1437 79 EEIEIEVSDVEKALEILKRLGFKEVA 104 (178)
T ss_pred eeEEEEeCCHHHHHHHHHHcCCceee
Confidence 46788999999999999999988654
No 325
>PRK03381 PII uridylyl-transferase; Provisional
Probab=20.55 E-value=3.5e+02 Score=22.50 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=31.8
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEe----cCCC--ccEEEEeCCCCCeEE
Q 033399 70 RHTCIAIRD----VSKLKMILDKAGISYTL----SKSG--RPAIFTRDPDANALE 114 (120)
Q Consensus 70 ~hi~f~v~d----~d~~~~~l~~~Gv~~~~----~~~g--~~~~~~~DPdGn~iE 114 (120)
.-+.+.+.| +..+...|.+.|+.+.. ...+ .-.|||.|++|..++
T Consensus 708 t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 708 TVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 446666667 45566788899999966 2222 467999999998764
No 326
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=57 Score=22.82 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.6
Q ss_pred hhhhhhhhccCceEe
Q 033399 12 INKHQRFNLLGLEIN 26 (120)
Q Consensus 12 ~~~~fy~~vLG~~~~ 26 (120)
...+||.+.|||++.
T Consensus 149 e~a~wy~dyLGleie 163 (246)
T KOG4657|consen 149 EAASWYNDYLGLEIE 163 (246)
T ss_pred HHHHHHHHhcCceee
Confidence 346899999999994
No 327
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=20.22 E-value=2.8e+02 Score=20.07 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.7
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEe---cC--CC-ccEEEEeCCCCCe
Q 033399 70 RHTCIAIRD----VSKLKMILDKAGISYTL---SK--SG-RPAIFTRDPDANA 112 (120)
Q Consensus 70 ~hi~f~v~d----~d~~~~~l~~~Gv~~~~---~~--~g-~~~~~~~DPdGn~ 112 (120)
.-+.|.++| +-+++..+..+|+..+. .+ .+ +..+|+.|=+|+.
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc
Confidence 568888885 67788899999999866 22 12 4556667877765
No 328
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=20.12 E-value=3.8e+02 Score=20.41 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=26.5
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEecCCCccEEEEeCCCCCeE
Q 033399 69 DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 113 (120)
Q Consensus 69 ~~hi~f~v~d~d~~~~~l~~~Gv~~~~~~~g~~~~~~~DPdGn~i 113 (120)
...+.+++.|-.=..+||...=.+......| .+||.||+|++.
T Consensus 345 Tr~v~v~aqdA~WEveRL~~L~~DpdSrfgG--LLff~d~~G~R~ 387 (399)
T TIGR03079 345 TVEVKMEAKDALWEVQRLMALLGDPESRFGG--LLMFWDPEGNRI 387 (399)
T ss_pred ceEEEEEEehhhhHHHHHHHHhcCcccccce--EEEEEcCCCCEE
Confidence 3566777777655667776554444333333 466789999875
Done!