BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033400
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 47 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 105
++ G V+D+ P +T G GGV RN+AE +++G S LG D
Sbjct: 10 LVFGASVVDVFGFSKASYRPYNSTPGHVKISFGGVCRNIAENXARVGVNTNFXSILGND 68
>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
Length = 364
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 48 IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVAR----------NVAEC 88
IGG+ + +P P P T LGKA YV G+ R N AEC
Sbjct: 139 TIGGVPCKLQLSPIQPKRPAATYLGKAGYV--GLTRQADAANNFHDNDAEC 187
>pdb|3FGC|B Chain B, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
pdb|3FGC|D Chain D, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
Length = 332
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 55 DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 93
D ++ P I NP T G + ++ V E +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187
>pdb|1BRL|B Chain B, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
pdb|1LUC|B Chain B, Bacterial Luciferase
pdb|1XKJ|A Chain A, Bacterial Luciferase Beta2 Homodimer
pdb|1XKJ|B Chain B, Bacterial Luciferase Beta2 Homodimer
pdb|1BSL|A Chain A, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BSL|B Chain B, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BRL|D Chain D, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
Length = 324
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 55 DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 93
D ++ P I NP T G + ++ V E +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 50 GGMVLDIHATPSIPANPRTTTLGKANYVL 78
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 50 GGMVLDIHATPSIPANPRTTTLGKANYVL 78
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 50 GGMVLDIHATPSIPANPRTTTLGKANYVL 78
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 49 IGGMVLD-IHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 107
+G LD I P + + A GG A N A + KLG ++S +G D +
Sbjct: 11 VGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFK 70
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 78 LGGVARNVAECMSKLGAKPYMISALGLD 105
GG N+A +S+LG K +IS LG D
Sbjct: 53 FGGSPANIAVNLSRLGKKVALISRLGAD 80
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 GGVARNVAECMSKLGAKPYMISALGLD 105
GG NVA +S+LG K +IS +G D
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGND 59
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 GGVARNVAECMSKLGAKPYMISALGLD 105
GG NVA +S+LG K +IS +G D
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGND 59
>pdb|1OFZ|A Chain A, Crystal Structure Of Fungal Lectin: Six-Bladed
Beta-Propeller Fold And Novel Fucose Recognition Mode
For Aleuria Aurantia Lectin
pdb|1OFZ|B Chain B, Crystal Structure Of Fungal Lectin: Six-Bladed
Beta-Propeller Fold And Novel Fucose Recognition Mode
For Aleuria Aurantia Lectin
Length = 312
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 67 RTTTLGKANYVLGGVARNV---AECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118
R G N GG ++NV A+ S L A + SA G+ + +YC N N+L+
Sbjct: 35 REAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWK-SAQGIQIRVYCVNKDNILS 88
>pdb|1IUB|A Chain A, Fucose-Specific Lectin From Aleuria Aurantia
(Hg-Derivative Form)
pdb|1IUC|A Chain A, Fucose-Specific Lectin From Aleuria Aurantia With Three
Ligands
Length = 312
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 67 RTTTLGKANYVLGGVARNV---AECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118
R G N GG ++NV A+ S L A + SA G+ + +YC N N+L+
Sbjct: 35 REAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWK-SAQGIQIRVYCVNKDNILS 88
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 79 GGVARNVAECMSKLGAKPYMISALGLD 105
GG + NV C+++LG + I LG D
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDD 76
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 79 GGVARNVAECMSKLGAKPYMISALGLD 105
GG + NV C+++LG + I LG D
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDD 76
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 79 GGVARNVAECMSKLGAKPYMISALGLDMEIY 109
GGVA N+A + LG + ++ A G D Y
Sbjct: 57 GGVAGNMAFAIGVLGGEVALVGAAGADFADY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,289,244
Number of Sequences: 62578
Number of extensions: 110899
Number of successful extensions: 319
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 22
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)