BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033400
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30235|PSUK_ECOLI Pseudouridine kinase OS=Escherichia coli (strain K12) GN=psuK PE=1
SV=2
Length = 313
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 41 QEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMIS 100
+E +IIG +D+ N + GK + GGV RN+A+ ++ LG K +++S
Sbjct: 2 REKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLS 61
Query: 101 ALGLDM 106
A+G D
Sbjct: 62 AVGSDF 67
>sp|Q9CA67|CHLP_ARATH Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis
thaliana GN=CHLP PE=1 SV=1
Length = 467
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 27 VLHKVALSKLQLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVA 86
V HK + K QL + A+ I+GG ++ + A P IP +PR L K ++G A V
Sbjct: 281 VTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHP-IPEHPRPRRLSKRVALVGDAAGYVT 339
Query: 87 EC 88
+C
Sbjct: 340 KC 341
>sp|Q9ZS34|CHLP_TOBAC Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana
tabacum GN=CHLP PE=2 SV=1
Length = 464
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 27 VLHKVALSKLQLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVA 86
V HK + K QL + A+ I GG ++ + A P IP +PR L ++G A V
Sbjct: 278 VTHKADIKKFQLATRLRADSKITGGKIIRVEAHP-IPEHPRPRRLQDRVALVGDAAGYVT 336
Query: 87 EC 88
+C
Sbjct: 337 KC 338
>sp|Q6LK43|IOLC_PHOPR 5-dehydro-2-deoxygluconokinase OS=Photobacterium profundum GN=iolC
PE=3 SV=1
Length = 331
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 33 LSKLQLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKL 92
++K+ LQ+ + +++G +D++A AN + N +GG A N+A +SKL
Sbjct: 1 MTKIALQQDRPLDAIVLGRAGVDLYARE---ANTDMADISGFNKFVGGSAANIAVAISKL 57
Query: 93 GAKPYMISALGLD 105
G K I + D
Sbjct: 58 GGKVGFIGCVADD 70
>sp|O84763|MURD_CHLTR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=murD PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 25 NPVLHKVALSKLQLQKQEAAEPMIIGGMVLDI 56
NP + V +S QL QE + P++ GGM+L+I
Sbjct: 146 NPGVRIVEISSFQLADQEKSYPVLSGGMILNI 177
>sp|Q3KKT4|MURD_CHLTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=murD PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 25 NPVLHKVALSKLQLQKQEAAEPMIIGGMVLDI 56
NP + V +S QL QE + P++ GGM+L+I
Sbjct: 146 NPGVRIVEISSFQLADQEKSYPVLSGGMILNI 177
>sp|B0B8Y4|MURD_CHLT2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=murD PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 25 NPVLHKVALSKLQLQKQEAAEPMIIGGMVLDI 56
NP + V +S QL QE + P++ GGM+L+I
Sbjct: 146 NPGVRIVEISSFQLADQEKSYPVLSGGMILNI 177
>sp|B0BAL3|MURD_CHLTB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=murD
PE=3 SV=1
Length = 416
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 25 NPVLHKVALSKLQLQKQEAAEPMIIGGMVLDI 56
NP + V +S QL QE + P++ GGM+L+I
Sbjct: 146 NPGVRIVEISSFQLADQEKSYPVLSGGMILNI 177
>sp|Q6Z2T6|CHLP_ORYSJ Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa
subsp. japonica GN=CHLP PE=2 SV=1
Length = 463
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 27 VLHKVALSKLQLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVA 86
V HK + K Q + A+ I GG ++ + A P IP +PR + ++G A V
Sbjct: 277 VTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHP-IPEHPRPKRVAGRVTLVGDAAGYVT 335
Query: 87 EC 88
+C
Sbjct: 336 KC 337
>sp|P33020|YEII_ECOLI Uncharacterized sugar kinase YeiI OS=Escherichia coli (strain K12)
GN=yeiI PE=3 SV=2
Length = 362
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 47 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 106
+++G + +DI I + G + GGV RN+A ++ LG +++S +G D
Sbjct: 61 VVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDF 120
>sp|O27587|Y1544_METTH Uncharacterized sugar kinase MTH_1544 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1544 PE=3 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 62 IPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 107
P +T + + + GG A NVA S+LG + ++SA+G D E
Sbjct: 24 FPEPNTSTAIKRMRNLHGGAAANVALVGSRLGLRTSLVSAVGGDFE 69
>sp|A8MC59|COXX_CALMQ Protoheme IX farnesyltransferase OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=ctaB PE=3 SV=2
Length = 281
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 75 NYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW 111
N V+GG A N A + AKP + ++ L M IY W
Sbjct: 134 NIVIGGFAGNAALLSGWIMAKPIDLESILLSMVIYVW 170
>sp|B2RJX3|PTP_PORG3 Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain
ATCC 33277 / DSM 20709 / JCM 12257) GN=ptpA PE=3 SV=1
Length = 732
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 50 GGMVLDIHATPSIPANPRTTTLGKANYVL 78
G ++DI +P++P T +GK +Y L
Sbjct: 438 GSAIIDIFQSPTVPRKVTVTNIGKGSYTL 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,874,116
Number of Sequences: 539616
Number of extensions: 1535147
Number of successful extensions: 3967
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3958
Number of HSP's gapped (non-prelim): 20
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)