Query 033400
Match_columns 120
No_of_seqs 109 out of 1070
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 13:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09850 pseudouridine kinase; 99.5 1.9E-14 4.1E-19 114.2 8.0 77 41-117 2-82 (313)
2 PTZ00292 ribokinase; Provision 99.5 2.8E-14 6.1E-19 113.4 8.3 82 36-117 8-94 (326)
3 PRK09954 putative kinase; Prov 99.5 7.1E-14 1.5E-18 113.4 8.0 75 42-117 56-135 (362)
4 PRK11142 ribokinase; Provision 99.5 1.1E-13 2.4E-18 108.3 7.9 74 44-117 3-81 (306)
5 cd01939 Ketohexokinase Ketohex 99.5 2.2E-13 4.7E-18 106.5 7.6 73 45-117 1-78 (290)
6 cd01947 Guanosine_kinase_like 99.4 1.9E-13 4.2E-18 105.2 7.1 67 45-111 1-68 (265)
7 cd01174 ribokinase Ribokinase 99.4 3.3E-13 7.1E-18 104.6 7.5 73 45-117 1-78 (292)
8 cd01168 adenosine_kinase Adeno 99.4 1.7E-13 3.7E-18 108.1 6.0 74 44-117 2-97 (312)
9 cd01944 YegV_kinase_like YegV- 99.4 4.6E-13 9.9E-18 104.3 7.4 72 45-117 1-77 (289)
10 cd01942 ribokinase_group_A Rib 99.4 6E-13 1.3E-17 102.6 7.8 73 45-117 1-78 (279)
11 KOG2855 Ribokinase [Carbohydra 99.4 2.2E-13 4.9E-18 112.1 5.5 71 41-111 7-78 (330)
12 cd01945 ribokinase_group_B Rib 99.4 9.8E-13 2.1E-17 101.8 8.2 73 45-117 1-78 (284)
13 PLN02813 pfkB-type carbohydrat 99.4 6.5E-13 1.4E-17 111.6 7.5 95 19-117 49-176 (426)
14 cd01941 YeiC_kinase_like YeiC- 99.4 1.1E-12 2.4E-17 101.5 7.2 73 45-117 1-77 (288)
15 PTZ00247 adenosine kinase; Pro 99.4 1.4E-12 3E-17 105.1 7.1 76 42-117 4-108 (345)
16 PLN02323 probable fructokinase 99.3 3.4E-12 7.4E-17 101.8 6.9 74 41-117 8-85 (330)
17 PF00294 PfkB: pfkB family car 99.3 4E-12 8.7E-17 98.3 5.9 73 44-117 2-78 (301)
18 COG0524 RbsK Sugar kinases, ri 99.3 5.9E-12 1.3E-16 99.1 6.6 73 45-117 1-79 (311)
19 PLN02341 pfkB-type carbohydrat 99.3 7.1E-12 1.5E-16 106.3 6.8 76 41-117 70-161 (470)
20 cd01166 KdgK 2-keto-3-deoxyglu 99.2 1.2E-11 2.6E-16 95.8 5.7 69 45-117 1-73 (294)
21 TIGR02198 rfaE_dom_I rfaE bifu 99.2 2.5E-11 5.5E-16 95.5 7.7 75 42-117 6-89 (315)
22 PLN02967 kinase 99.2 1.8E-11 3.9E-16 107.1 6.7 76 42-117 195-285 (581)
23 cd01167 bac_FRK Fructokinases 99.2 2.1E-11 4.6E-16 94.6 6.2 66 45-117 1-70 (295)
24 cd01172 RfaE_like RfaE encodes 99.2 4.7E-11 1E-15 93.2 7.0 72 45-117 1-81 (304)
25 PRK11316 bifunctional heptose 99.2 6.9E-11 1.5E-15 99.0 8.0 74 43-117 10-92 (473)
26 PLN02543 pfkB-type carbohydrat 99.2 5E-11 1.1E-15 102.6 6.2 76 42-117 124-214 (496)
27 TIGR02152 D_ribokin_bact ribok 99.2 7.6E-11 1.6E-15 91.8 6.6 68 50-117 1-73 (293)
28 cd01164 FruK_PfkB_like 1-phosp 99.2 6.2E-11 1.4E-15 92.4 6.0 70 47-117 4-77 (289)
29 cd01937 ribokinase_group_D Rib 99.1 8.1E-11 1.7E-15 90.1 6.3 62 45-117 1-64 (254)
30 PRK09813 fructoselysine 6-kina 99.1 9.8E-11 2.1E-15 90.4 5.7 61 44-117 1-65 (260)
31 TIGR03828 pfkB 1-phosphofructo 99.1 1.6E-10 3.5E-15 90.2 6.3 68 48-117 4-76 (304)
32 cd01940 Fructoselysine_kinase_ 99.1 1.7E-10 3.8E-15 88.5 5.6 60 45-117 1-64 (264)
33 PRK09434 aminoimidazole ribosi 99.1 3.1E-10 6.7E-15 89.1 6.7 64 44-117 3-70 (304)
34 PLN02630 pfkB-type carbohydrat 99.1 3.6E-10 7.9E-15 92.5 7.2 61 37-107 5-65 (335)
35 cd00287 ribokinase_pfkB_like r 99.0 1.2E-09 2.6E-14 79.6 6.6 56 45-100 1-57 (196)
36 PRK09513 fruK 1-phosphofructok 98.9 3.8E-09 8.2E-14 83.7 7.0 71 46-117 5-80 (312)
37 TIGR03168 1-PFK hexose kinase, 98.9 2.3E-09 5E-14 84.2 5.3 66 50-117 6-76 (303)
38 cd01946 ribokinase_group_C Rib 98.9 2.9E-09 6.3E-14 82.7 5.3 61 45-117 1-65 (277)
39 KOG3009 Predicted carbohydrate 98.9 2.8E-09 6E-14 91.8 5.2 81 29-114 331-412 (614)
40 TIGR01231 lacC tagatose-6-phos 98.8 8.5E-09 1.8E-13 81.6 6.8 69 48-117 4-76 (309)
41 PRK13508 tagatose-6-phosphate 98.8 6.9E-09 1.5E-13 82.1 6.2 65 47-112 4-68 (309)
42 PLN02379 pfkB-type carbohydrat 98.8 1.8E-08 3.8E-13 83.1 7.9 77 41-117 17-129 (367)
43 PRK15074 inosine/guanosine kin 98.7 2.9E-08 6.4E-13 84.3 7.5 69 42-110 32-125 (434)
44 COG2870 RfaE ADP-heptose synth 98.7 2.8E-08 6E-13 84.5 6.4 72 41-113 8-84 (467)
45 PRK10294 6-phosphofructokinase 98.7 3.2E-08 6.9E-13 78.3 6.2 69 48-117 7-79 (309)
46 cd01943 MAK32 MAK32 kinase. M 98.6 2.7E-08 5.9E-13 80.4 2.6 63 45-117 1-72 (328)
47 PLN02548 adenosine kinase 98.3 2.1E-07 4.5E-12 74.3 1.8 56 62-117 34-97 (332)
48 KOG2947 Carbohydrate kinase [C 97.9 1.7E-05 3.6E-10 64.3 4.9 67 43-109 4-71 (308)
49 COG1105 FruK Fructose-1-phosph 96.7 0.0018 3.8E-08 53.5 3.7 65 51-116 8-76 (310)
50 KOG2854 Possible pfkB family c 96.4 0.0037 8E-08 52.2 3.9 69 45-113 8-100 (343)
51 PRK14746 RepA leader peptide T 74.8 2.4 5.2E-05 22.8 1.5 12 7-18 2-13 (26)
52 PRK14745 RepA leader peptide T 65.9 5.2 0.00011 21.5 1.6 12 7-18 2-14 (26)
53 cd00562 NifX_NifB This CD repr 58.3 15 0.00032 23.9 3.2 40 79-119 47-86 (102)
54 PRK07573 sdhA succinate dehydr 55.5 20 0.00044 32.0 4.5 24 78-101 43-66 (640)
55 TIGR01281 DPOR_bchL light-inde 45.8 21 0.00045 27.5 2.7 19 82-100 17-35 (268)
56 TIGR02354 thiF_fam2 thiamine b 44.0 20 0.00044 27.3 2.4 21 75-95 26-46 (200)
57 PF09140 MipZ: ATPase MipZ; I 42.4 19 0.00042 29.3 2.1 20 81-100 17-36 (261)
58 COG1433 Uncharacterized conser 41.4 28 0.0006 25.1 2.6 43 76-119 48-90 (121)
59 PF00142 Fer4_NifH: 4Fe-4S iro 40.5 30 0.00065 28.4 2.9 24 81-104 16-39 (273)
60 cd02036 MinD Bacterial cell di 37.1 37 0.0008 23.8 2.7 24 77-100 7-35 (179)
61 KOG2499 Beta-N-acetylhexosamin 35.6 6.8 0.00015 34.8 -1.6 17 5-21 207-223 (542)
62 PRK13232 nifH nitrogenase redu 33.3 41 0.00089 26.1 2.6 18 82-99 18-35 (273)
63 PRK13235 nifH nitrogenase redu 32.9 43 0.00092 26.0 2.7 19 81-99 17-35 (274)
64 CHL00072 chlL photochlorophyll 32.7 44 0.00096 26.7 2.8 20 82-101 17-36 (290)
65 PF07304 SRA1: Steroid recepto 31.6 38 0.00083 25.1 2.1 16 5-20 69-84 (157)
66 KOG1389 3-oxoacyl CoA thiolase 31.5 49 0.0011 28.4 2.9 43 7-52 2-44 (435)
67 cd00851 MTH1175 This uncharact 31.4 60 0.0013 21.0 2.9 39 80-119 50-88 (103)
68 PF02579 Nitro_FeMo-Co: Dinitr 30.8 21 0.00046 22.9 0.5 42 77-119 37-78 (94)
69 cd02037 MRP-like MRP (Multiple 30.4 53 0.0011 23.5 2.6 19 82-100 17-35 (169)
70 COG0219 CspR Predicted rRNA me 30.0 51 0.0011 24.9 2.5 34 84-117 18-51 (155)
71 PRK15116 sulfur acceptor prote 29.6 44 0.00095 27.0 2.3 19 76-94 36-54 (268)
72 cd02032 Bchl_like This family 29.3 53 0.0011 25.3 2.6 19 82-100 17-35 (267)
73 cd01487 E1_ThiF_like E1_ThiF_l 28.2 58 0.0013 24.0 2.6 20 76-95 5-24 (174)
74 cd01483 E1_enzyme_family Super 27.8 54 0.0012 22.8 2.2 20 76-95 5-24 (143)
75 PF01488 Shikimate_DH: Shikima 27.7 63 0.0014 22.7 2.6 28 74-101 16-44 (135)
76 PRK09078 sdhA succinate dehydr 27.6 64 0.0014 28.5 3.1 41 78-118 20-60 (598)
77 COG0489 Mrp ATPases involved i 27.5 57 0.0012 25.9 2.6 21 81-101 74-94 (265)
78 PRK13230 nitrogenase reductase 27.5 55 0.0012 25.5 2.5 18 82-99 18-35 (279)
79 PRK08626 fumarate reductase fl 27.3 53 0.0011 29.5 2.6 41 76-116 11-51 (657)
80 cd02117 NifH_like This family 27.2 62 0.0014 24.1 2.6 19 82-100 17-35 (212)
81 COG1348 NifH Nitrogenase subun 27.0 55 0.0012 26.9 2.4 22 81-102 17-38 (278)
82 PRK06126 hypothetical protein; 26.8 1E+02 0.0022 26.4 4.1 21 81-101 18-38 (545)
83 PHA02518 ParA-like protein; Pr 26.6 62 0.0013 23.5 2.5 20 82-101 18-37 (211)
84 PLN02312 acyl-CoA oxidase 26.5 63 0.0014 29.4 2.9 35 1-35 5-39 (680)
85 PLN00093 geranylgeranyl diphos 26.5 80 0.0017 26.9 3.4 28 74-101 42-70 (450)
86 PRK13185 chlL protochlorophyll 26.2 63 0.0014 24.9 2.6 19 82-100 19-37 (270)
87 PRK08641 sdhA succinate dehydr 26.1 64 0.0014 28.4 2.9 40 78-117 11-50 (589)
88 PRK12837 3-ketosteroid-delta-1 26.0 1.1E+02 0.0024 26.3 4.2 23 80-102 16-38 (513)
89 PRK13236 nitrogenase reductase 26.0 70 0.0015 25.5 2.8 19 82-100 23-41 (296)
90 PRK11670 antiporter inner memb 25.6 64 0.0014 26.9 2.7 34 73-109 111-149 (369)
91 CHL00175 minD septum-site dete 25.6 1.1E+02 0.0024 23.7 3.9 28 73-100 19-51 (281)
92 cd02040 NifH NifH gene encodes 25.5 65 0.0014 24.5 2.5 20 82-101 18-37 (270)
93 COG2893 ManX Phosphotransferas 25.5 1.1E+02 0.0023 22.5 3.5 29 74-102 65-93 (143)
94 PRK13234 nifH nitrogenase redu 25.0 66 0.0014 25.6 2.5 19 82-100 21-39 (295)
95 PRK05855 short chain dehydroge 24.9 2.3E+02 0.005 23.6 5.8 24 78-101 324-347 (582)
96 PTZ00139 Succinate dehydrogena 24.8 73 0.0016 28.3 3.0 44 75-118 34-77 (617)
97 COG1053 SdhA Succinate dehydro 24.4 1E+02 0.0022 27.4 3.8 32 74-105 10-41 (562)
98 cd00757 ThiF_MoeB_HesA_family 24.4 70 0.0015 24.4 2.5 22 74-95 25-46 (228)
99 PF00899 ThiF: ThiF family; I 24.2 74 0.0016 22.0 2.4 19 76-94 8-26 (135)
100 TIGR03029 EpsG chain length de 24.0 72 0.0016 24.7 2.5 20 82-101 121-140 (274)
101 PRK10262 thioredoxin reductase 23.9 1.3E+02 0.0029 23.5 4.1 30 71-100 6-36 (321)
102 PRK06452 sdhA succinate dehydr 23.8 79 0.0017 27.7 3.0 41 77-117 12-52 (566)
103 TIGR01287 nifH nitrogenase iro 23.6 74 0.0016 24.6 2.5 19 82-100 17-35 (275)
104 PRK10037 cell division protein 23.6 77 0.0017 24.3 2.6 20 82-101 19-38 (250)
105 TIGR02356 adenyl_thiF thiazole 23.1 71 0.0015 24.1 2.3 21 74-94 25-45 (202)
106 PRK08958 sdhA succinate dehydr 22.7 84 0.0018 27.7 2.9 41 78-118 15-55 (588)
107 PF01494 FAD_binding_3: FAD bi 22.6 1.2E+02 0.0027 23.1 3.6 29 75-103 5-34 (356)
108 PF14948 RESP18: RESP18 domain 22.5 75 0.0016 22.5 2.1 19 3-21 17-35 (105)
109 PRK08328 hypothetical protein; 22.4 80 0.0017 24.4 2.5 20 76-95 33-52 (231)
110 cd01938 ADPGK_ADPPFK ADP-depen 22.2 97 0.0021 26.9 3.2 32 74-105 101-133 (445)
111 TIGR03371 cellulose_yhjQ cellu 22.2 88 0.0019 23.3 2.6 20 82-101 19-38 (246)
112 PRK06153 hypothetical protein; 22.0 71 0.0015 27.5 2.2 30 74-105 180-209 (393)
113 TIGR02114 coaB_strep phosphopa 21.8 77 0.0017 24.5 2.3 25 76-100 22-46 (227)
114 PLN00128 Succinate dehydrogena 21.6 1E+02 0.0022 27.7 3.2 44 75-118 55-98 (635)
115 TIGR02045 P_fruct_ADP ADP-spec 21.2 72 0.0016 27.9 2.2 29 76-104 86-116 (446)
116 PF14113 DUF4285: Domain of un 20.8 43 0.00093 23.5 0.6 41 80-120 6-51 (115)
117 TIGR00137 gid_trmFO tRNA:m(5)U 20.7 1.3E+02 0.0029 26.0 3.7 27 75-101 4-31 (433)
118 TIGR01969 minD_arch cell divis 20.3 99 0.0021 23.0 2.6 19 82-100 18-36 (251)
119 cd00755 YgdL_like Family of ac 20.3 94 0.002 24.3 2.5 21 74-94 15-35 (231)
No 1
>PRK09850 pseudouridine kinase; Provisional
Probab=99.54 E-value=1.9e-14 Score=114.16 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=67.6
Q ss_pred CCCCcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCc
Q 033400 41 QEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 116 (120)
Q Consensus 41 ~~~~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~ 116 (120)
+|++.|+|+|++++|++++++.++..+++++......+||+++|+|++++|||.++.++|+||+|.+|+ .|++.||
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gV 81 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGV 81 (313)
T ss_pred CCCCcEEEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCC
Confidence 467899999999999999987766667777778889999999999999999999999999999999997 4455677
Q ss_pred c
Q 033400 117 L 117 (120)
Q Consensus 117 ~ 117 (120)
+
T Consensus 82 d 82 (313)
T PRK09850 82 Y 82 (313)
T ss_pred C
Confidence 5
No 2
>PTZ00292 ribokinase; Provisional
Probab=99.53 E-value=2.8e-14 Score=113.39 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=71.5
Q ss_pred cccCCCCCCcEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----c
Q 033400 36 LQLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----C 110 (120)
Q Consensus 36 ~~~~~~~~~~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~ 110 (120)
+++.+...++|+|+|.+++|+++.++++|.++++... .+...+||++.|+|++++|||.++.++|.||+|.+|+ .
T Consensus 8 ~~~~~~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~ 87 (326)
T PTZ00292 8 ASHGGEAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKN 87 (326)
T ss_pred hcccCCCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHH
Confidence 4566777889999999999999999998888777654 6788999999999999999999999999999999998 4
Q ss_pred HHhcCcc
Q 033400 111 WNTGNLL 117 (120)
Q Consensus 111 ~~~~~~~ 117 (120)
|++.||+
T Consensus 88 l~~~GI~ 94 (326)
T PTZ00292 88 FKRNGVN 94 (326)
T ss_pred HHHcCCC
Confidence 4556665
No 3
>PRK09954 putative kinase; Provisional
Probab=99.49 E-value=7.1e-14 Score=113.40 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=64.2
Q ss_pred CCCcEEEEccccceeeeecC-CCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCc
Q 033400 42 EAAEPMIIGGMVLDIHATPS-IPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 116 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~v~-~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~ 116 (120)
+...|+|+|++++|++++++ +.|..++ .+..+...+||+++|+|++++|||.++.|+|+||+|.+|+ .+++.||
T Consensus 56 ~~~~v~viG~~~vD~~~~~~~~~p~~~~-~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GV 134 (362)
T PRK09954 56 EQEYCVVVGAINMDIRGMADIRYPQAAS-HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGV 134 (362)
T ss_pred CCccEEEEEEEEEEEEEeeCCcCcCCCC-CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCC
Confidence 34589999999999999988 5565554 5668889999999999999999999999999999999998 4555676
Q ss_pred c
Q 033400 117 L 117 (120)
Q Consensus 117 ~ 117 (120)
+
T Consensus 135 d 135 (362)
T PRK09954 135 N 135 (362)
T ss_pred C
Confidence 5
No 4
>PRK11142 ribokinase; Provisional
Probab=99.48 E-value=1.1e-13 Score=108.32 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=65.5
Q ss_pred CcEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 44 AEPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 44 ~~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
++|+|+|.+++|+++.++++|.+++.... ++...+||++.|+|++|+|||.++.++|.+|+|.+|+ .+++.||+
T Consensus 3 ~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 81 (306)
T PRK11142 3 GKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID 81 (306)
T ss_pred CcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence 36999999999999999998888777654 7888999999999999999999999999999999998 44556665
No 5
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.45 E-value=2.2e-13 Score=106.54 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=64.3
Q ss_pred cEEEEccccceeeeecCCCCCCCCcee-ceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~-~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
.|+|+|++++|+++.++..|.+++... .+....+||+++|+|++++|||.++.++|+||+|.+|+ .+++.||+
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId 78 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGID 78 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCc
Confidence 489999999999999999888876654 46778899999999999999999999999999999998 55567765
No 6
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.45 E-value=1.9e-13 Score=105.21 Aligned_cols=67 Identities=25% Similarity=0.276 Sum_probs=60.7
Q ss_pred cEEEEccccceeeeecCCCCCCCCce-eceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccH
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTT-LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW 111 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~-~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~ 111 (120)
+|+|+|.+++|+++.++.+|.+++.. ..++...+||+++|+|++++|||.++.++|+||+|.+|+.+
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i 68 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQS 68 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHH
Confidence 58999999999999999888876554 45899999999999999999999999999999999999743
No 7
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.44 E-value=3.3e-13 Score=104.65 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=64.4
Q ss_pred cEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+|+|.+++|++...++.|..++.+.. .+...+||++.|+|++++|||.++.++|.+|+|.+|+ .|++.||+
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~ 78 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGID 78 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCC
Confidence 5899999999999999887777777665 7789999999999999999999999999999999997 45556765
No 8
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.43 E-value=1.7e-13 Score=108.11 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=62.8
Q ss_pred CcEEEEccccceeeeecCCCC------CCCCceec------------eeeEecCChHHHHHHHHHHcCCCcEEEEeecCC
Q 033400 44 AEPMIIGGMVLDIHATPSIPA------NPRTTTLG------------KANYVLGGVARNVAECMSKLGAKPYMISALGLD 105 (120)
Q Consensus 44 ~~VlvvGs~~iDii~~v~~~p------~~g~~~~~------------~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD 105 (120)
.+|+|+|++++|+++++++.| .++++... .....+||+++|+|++++|||.++.++++||+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 469999999999999999876 44554443 368889999999999999999999999999999
Q ss_pred hhcc----cHHhcCcc
Q 033400 106 MEIY----CWNTGNLL 117 (120)
Q Consensus 106 ~~G~----~~~~~~~~ 117 (120)
.+|+ .+++.||+
T Consensus 82 ~~g~~i~~~l~~~GV~ 97 (312)
T cd01168 82 KLGDFLLKDLRAAGVD 97 (312)
T ss_pred hhHHHHHHHHHHCCCc
Confidence 9998 45566765
No 9
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.42 E-value=4.6e-13 Score=104.30 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=63.5
Q ss_pred cEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+|+|.+++|++.++++.|..++.... .+...+|| ++|+|++++|||.++.++|.||+|.+|+ .|++.||+
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~ 77 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIE 77 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCc
Confidence 5899999999999999988887766654 78899999 9999999999999999999999999997 45556664
No 10
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.42 E-value=6e-13 Score=102.56 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=64.1
Q ss_pred cEEEEccccceeeeecCCCCCCCCc-eeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~-~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+|+|.+++|+++++++.|..++. ...+....+||++.|+|++++|||.++.++|.+|+|.+|+ .++..||+
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~ 78 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVD 78 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCC
Confidence 5899999999999999998877654 4458999999999999999999999999999999999996 45556664
No 11
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.2e-13 Score=112.12 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCCCcEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccH
Q 033400 41 QEAAEPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW 111 (120)
Q Consensus 41 ~~~~~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~ 111 (120)
.+.+.|+|+|++++|++.++.+.|.++++... .+...+||+++|+|++++|||.+++|||.||+|.||+.+
T Consensus 7 ~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l 78 (330)
T KOG2855|consen 7 GEPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDL 78 (330)
T ss_pred cCCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHH
Confidence 45779999999999999999999999888665 899999999999999999999999999999999999844
No 12
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.40 E-value=9.8e-13 Score=101.79 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=63.8
Q ss_pred cEEEEccccceeeeecCCCCCCCCce-eceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccH----HhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTT-LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW----NTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~-~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~----~~~~~~ 117 (120)
+|+|+|.+++|++.+++..|..++.. ..++...+||+++|+|.+++|||.++.++|.+|+|.+|+++ ++.||+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~ 78 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVD 78 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCC
Confidence 58999999999999998887776554 45899999999999999999999999999999999999744 456664
No 13
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.40 E-value=6.5e-13 Score=111.64 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=72.3
Q ss_pred cCCCCCCcchhhccccccccCCCCCCcEEEEccccceeeeecCC-------CCCCCCce-------------ec-eeeEe
Q 033400 19 QQPCEANPVLHKVALSKLQLQKQEAAEPMIIGGMVLDIHATPSI-------PANPRTTT-------------LG-KANYV 77 (120)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VlvvGs~~iDii~~v~~-------~p~~g~~~-------------~~-~~~~~ 77 (120)
++|.|.+-..+..|-. -..++.+|+++|++++|++..+++ .|..+.+. .. .+...
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~ 124 (426)
T PLN02813 49 QQDEEQPEGFGPIPEK----AVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKAS 124 (426)
T ss_pred cCCCCCccccCCCCcc----cCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEe
Confidence 5665555433322222 223578899999999999999998 77777322 22 57789
Q ss_pred cCChHHHHHHHHHHcC--------CCcEEEEeecCChhcc----cHHhcCcc
Q 033400 78 LGGVARNVAECMSKLG--------AKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG--------~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+||+++|+|++++||| .++.|+|+||+|.+|+ .|++.||+
T Consensus 125 ~GG~~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd 176 (426)
T PLN02813 125 AGGSLSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVH 176 (426)
T ss_pred cCcHHHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCc
Confidence 9999999999999999 7999999999999998 45556765
No 14
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.38 E-value=1.1e-12 Score=101.46 Aligned_cols=73 Identities=32% Similarity=0.421 Sum_probs=64.1
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccH----HhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW----NTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~----~~~~~~ 117 (120)
.|+++|.+++|+++.+++.|.+++.........+||+++|+|++++|||.++.+++.+|+|.+|+.+ ++.||+
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~ 77 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLN 77 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCc
Confidence 4899999999999999987777766666778999999999999999999999999999999999844 556765
No 15
>PTZ00247 adenosine kinase; Provisional
Probab=99.36 E-value=1.4e-12 Score=105.13 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=62.9
Q ss_pred CCCcEEEEccccceeeeecCC------CCCCCCceec-e--------------eeEecCChHHHHHHHHHHcC---C-Cc
Q 033400 42 EAAEPMIIGGMVLDIHATPSI------PANPRTTTLG-K--------------ANYVLGGVARNVAECMSKLG---A-KP 96 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~v~~------~p~~g~~~~~-~--------------~~~~~GG~aaNvAvalaRLG---~-~v 96 (120)
..++|+|+|++++|+++++++ .|..|+.... + +...+||+++|+|++++||| . ++
T Consensus 4 ~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v 83 (345)
T PTZ00247 4 APKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFV 83 (345)
T ss_pred CCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcE
Confidence 467899999999999999985 3666655443 3 37889999999999999885 5 99
Q ss_pred EEEEeecCChhcc----cHHhcCcc
Q 033400 97 YMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 97 ~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
.|+|+||+|.+|+ .+++.||+
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd 108 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVE 108 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCe
Confidence 9999999999998 45567775
No 16
>PLN02323 probable fructokinase
Probab=99.32 E-value=3.4e-12 Score=101.77 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCCCcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCc
Q 033400 41 QEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 116 (120)
Q Consensus 41 ~~~~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~ 116 (120)
.++++|+|+|++++|++..++..|.. ....+...+||+++|+|++++|||.++.++++||+|.+|+ .|++.||
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI 84 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVSGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGV 84 (330)
T ss_pred CCCCcEEEechhhhhhccCCCCCCcc---cccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCC
Confidence 35668999999999999877654432 1235678899999999999999999999999999999997 5566776
Q ss_pred c
Q 033400 117 L 117 (120)
Q Consensus 117 ~ 117 (120)
+
T Consensus 85 ~ 85 (330)
T PLN02323 85 N 85 (330)
T ss_pred C
Confidence 5
No 17
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.30 E-value=4e-12 Score=98.33 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=63.6
Q ss_pred CcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 44 AEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 44 ~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
++|+|+|.+++|++..++.+ .++.....+....+||++.|+|++|++||.++.+++.+|+|.+|+ .+++.||+
T Consensus 2 ~~v~~iG~~~iD~~~~~~~~-~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~ 78 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDRF-KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVD 78 (301)
T ss_dssp EEEEEESEEEEEEEEESSSH-TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CcEEEECccceEEEeecCCc-CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccccccc
Confidence 47999999999999999988 555555568999999999999999999999999999999999998 44556654
No 18
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.29 E-value=5.9e-12 Score=99.13 Aligned_cols=73 Identities=29% Similarity=0.292 Sum_probs=63.2
Q ss_pred cEEEEccccceeeee-cCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHAT-PSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~-v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+++|++++|++.+ .+.+|.+++.... .....+||+++|+|++++|||.++.|+|+||+|.+|+ .+++.||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd 79 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVD 79 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCc
Confidence 489999999999997 5567777766555 6788999999999999999999999999999999997 66667775
No 19
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.28 E-value=7.1e-12 Score=106.33 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=62.2
Q ss_pred CCCCcEEEEccccceeeeecCCCCCCCCce------------eceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhc
Q 033400 41 QEAAEPMIIGGMVLDIHATPSIPANPRTTT------------LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEI 108 (120)
Q Consensus 41 ~~~~~VlvvGs~~iDii~~v~~~p~~g~~~------------~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G 108 (120)
.+..+|+++|++++|+++.+++.|.+++.. +.......|| ++|+|++++|||.++.++|+||+|.+|
T Consensus 70 ~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G 148 (470)
T PLN02341 70 GKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYG 148 (470)
T ss_pred cccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHH
Confidence 356789999999999999999988876431 1245556788 689999999999999999999999999
Q ss_pred cc----HHhcCcc
Q 033400 109 YC----WNTGNLL 117 (120)
Q Consensus 109 ~~----~~~~~~~ 117 (120)
++ +++.||+
T Consensus 149 ~~i~~~L~~~GVd 161 (470)
T PLN02341 149 KFLLDVLAEEGIS 161 (470)
T ss_pred HHHHHHHHHcCCe
Confidence 84 4556665
No 20
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.24 E-value=1.2e-11 Score=95.82 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=57.0
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+|+|++++|++...+. ......+....+||+++|+|++++|||.++.++|.||+|.+|+ .|++.||+
T Consensus 1 ~i~~iG~~~iD~~~~~~~----~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~ 73 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG----RLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVD 73 (294)
T ss_pred CeEEechhheeeecCCCC----ccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCC
Confidence 589999999999876542 2233457788899999999999999999999999999999997 44556765
No 21
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.24 E-value=2.5e-11 Score=95.52 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=58.6
Q ss_pred CCCcEEEEccccceeeee--cCCC-C-CCCCc-eeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHH
Q 033400 42 EAAEPMIIGGMVLDIHAT--PSIP-A-NPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWN 112 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~--v~~~-p-~~g~~-~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~ 112 (120)
+.++|+|+|.+++|.+++ +++. | .++.. ....+...+|| ++|+|.+|+|||.++.++|+||+|.+|+ .|+
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~ 84 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLA 84 (315)
T ss_pred CCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHH
Confidence 367899999999999987 4332 2 22222 22366778999 7999999999999999999999999997 445
Q ss_pred hcCcc
Q 033400 113 TGNLL 117 (120)
Q Consensus 113 ~~~~~ 117 (120)
+.||+
T Consensus 85 ~~gI~ 89 (315)
T TIGR02198 85 EEGID 89 (315)
T ss_pred HCCCC
Confidence 67776
No 22
>PLN02967 kinase
Probab=99.22 E-value=1.8e-11 Score=107.12 Aligned_cols=76 Identities=18% Similarity=0.037 Sum_probs=60.8
Q ss_pred CCCcEEEEccccceeeeecC--CCCCCC---------CceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc-
Q 033400 42 EAAEPMIIGGMVLDIHATPS--IPANPR---------TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY- 109 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~v~--~~p~~g---------~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~- 109 (120)
..+.|+|+|.+++|++-... ..+..+ ++.+..+...+||+++|+|++|+|||.++.|+|+||+|.+|+
T Consensus 195 ~~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ 274 (581)
T PLN02967 195 WPPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQA 274 (581)
T ss_pred CCCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHH
Confidence 45579999999999965332 111112 456678899999999999999999999999999999999998
Q ss_pred ---cHHhcCcc
Q 033400 110 ---CWNTGNLL 117 (120)
Q Consensus 110 ---~~~~~~~~ 117 (120)
.|+..||+
T Consensus 275 ll~~L~~~GVD 285 (581)
T PLN02967 275 MLYYLNVNKVQ 285 (581)
T ss_pred HHHHHHHcCCc
Confidence 55567775
No 23
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.22 E-value=2.1e-11 Score=94.61 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=56.9
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhccc----HHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYC----WNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~----~~~~~~~ 117 (120)
+|+|+|.+++|++...+.. .......+||+++|+|.++++||.++.+++.+|+|.+|+. |++.||+
T Consensus 1 ~ilviG~~~~D~~~~~~~~-------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~ 70 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA-------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVD 70 (295)
T ss_pred CEEEEcceeEEEecCCCCC-------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCC
Confidence 6899999999999766543 4567888999999999999999999999999999999984 4556764
No 24
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.19 E-value=4.7e-11 Score=93.21 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=56.0
Q ss_pred cEEEEccccceeeeecC--CCCCCCC---ceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhccc----HHhcC
Q 033400 45 EPMIIGGMVLDIHATPS--IPANPRT---TTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYC----WNTGN 115 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~--~~p~~g~---~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~----~~~~~ 115 (120)
+|+|+|.+++|++++++ +.|.... .........+|| ++|+|.+|+|||.++.++|.||+|.+|+. +++.|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 68999999999999864 3322211 122367778999 58999999999999999999999999984 45566
Q ss_pred cc
Q 033400 116 LL 117 (120)
Q Consensus 116 ~~ 117 (120)
|+
T Consensus 80 I~ 81 (304)
T cd01172 80 ID 81 (304)
T ss_pred CC
Confidence 64
No 25
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.18 E-value=6.9e-11 Score=99.02 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=58.6
Q ss_pred CCcEEEEccccceeeeecC--CC-C-CCCCce-eceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHh
Q 033400 43 AAEPMIIGGMVLDIHATPS--IP-A-NPRTTT-LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNT 113 (120)
Q Consensus 43 ~~~VlvvGs~~iDii~~v~--~~-p-~~g~~~-~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~ 113 (120)
.++|+|+|++++|++++++ +. | .+.... ...+...+|| ++|+|++|+|||.++.++|.||+|.+|+ .|++
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~ 88 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAA 88 (473)
T ss_pred CCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 4579999999999999864 22 2 233233 3478888999 6899999999999999999999999998 4555
Q ss_pred cCcc
Q 033400 114 GNLL 117 (120)
Q Consensus 114 ~~~~ 117 (120)
.||+
T Consensus 89 ~gI~ 92 (473)
T PRK11316 89 VGVK 92 (473)
T ss_pred cCCc
Confidence 6665
No 26
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.16 E-value=5e-11 Score=102.60 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCcEEEEccccceeeeecCCCCCC-C----------CceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc-
Q 033400 42 EAAEPMIIGGMVLDIHATPSIPANP-R----------TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY- 109 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~v~~~p~~-g----------~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~- 109 (120)
..+.|+|+|.+.+|++-........ . +-....+...+||+++|+|++++|||.++.|+|+||+|.+|+
T Consensus 124 ~~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~ 203 (496)
T PLN02543 124 DPPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEE 203 (496)
T ss_pred CCCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHH
Confidence 4556999999999999864421110 0 002236788999999999999999999999999999999998
Q ss_pred ---cHHhcCcc
Q 033400 110 ---CWNTGNLL 117 (120)
Q Consensus 110 ---~~~~~~~~ 117 (120)
.|+..||+
T Consensus 204 l~~~L~~~GVD 214 (496)
T PLN02543 204 LVLMMNKERVQ 214 (496)
T ss_pred HHHHHHHcCCc
Confidence 45567765
No 27
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.16 E-value=7.6e-11 Score=91.80 Aligned_cols=68 Identities=24% Similarity=0.248 Sum_probs=60.5
Q ss_pred ccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 50 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 50 Gs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
|.+++|+++.++++|..++.+.. .+...+||++.|+|.++++||.++.+++.+|+|.+|+ .++..||+
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~ 73 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGID 73 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCC
Confidence 78999999999998888878765 7889999999999999999999999999999999997 44556664
No 28
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.15 E-value=6.2e-11 Score=92.45 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=58.9
Q ss_pred EEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 47 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 47 lvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
.++|+.++|++++++++|..+.....+....+||+++|+|++|+|||.++.++|.||+| +|+ .|++.||+
T Consensus 4 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~ 77 (289)
T cd01164 4 TVTLNPAIDLTIELDQLQPGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIP 77 (289)
T ss_pred EEecChHHeEEEEcCcccCCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCC
Confidence 57899999999999998654333445888999999999999999999999999999998 787 45556664
No 29
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.15 E-value=8.1e-11 Score=90.11 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=53.2
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc--cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY--CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~--~~~~~~~~ 117 (120)
+|+|+|++++|++... .+....+||+++|+|++++|||.++.++|.||+|.+|+ .+++.||+
T Consensus 1 ~il~iG~~~iD~~~~~-----------~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~~~~l~~~gv~ 64 (254)
T cd01937 1 KIVIIGHVTIDEIVTN-----------GSGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDKWSDLFDNGIE 64 (254)
T ss_pred CeEEEcceeEEEEecC-----------CceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHHHHHHHHCCcE
Confidence 5899999999999753 13568899999999999999999999999999999997 44556654
No 30
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.12 E-value=9.8e-11 Score=90.40 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=52.3
Q ss_pred CcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccH----HhcCcc
Q 033400 44 AEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCW----NTGNLL 117 (120)
Q Consensus 44 ~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~----~~~~~~ 117 (120)
++|+++|.+++|++.+.. ...+||+++|+|++++|||.++.++|+||+|.+|+++ ++.||+
T Consensus 1 ~~v~~iG~~~~D~~~~~~-------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~ 65 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG-------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVD 65 (260)
T ss_pred CeEEEeccceeeecccCC-------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCc
Confidence 479999999999986431 2589999999999999999999999999999999844 556765
No 31
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.10 E-value=1.6e-10 Score=90.19 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=58.3
Q ss_pred EEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 48 IIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 48 vvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
|.=+.++|++++++++| +|+.+.. ++...+||+++|+|++++|||.++.++|+||+| +|+ .|++.||+
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId 76 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIK 76 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCc
Confidence 45578999999999988 7766655 889999999999999999999999999999999 587 45556765
No 32
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.08 E-value=1.7e-10 Score=88.53 Aligned_cols=60 Identities=27% Similarity=0.194 Sum_probs=51.7
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+|+|+|.+++|++... ....+||+++|+|++++|||.++.++|.+|+|.+|+ .|++.||+
T Consensus 1 ~v~~iG~~~~D~~~~~-------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~ 64 (264)
T cd01940 1 RLAAIGDNVVDKYLHL-------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVD 64 (264)
T ss_pred CeEEEcceEEEEeccC-------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCC
Confidence 5899999999998531 457899999999999999999999999999999998 45556664
No 33
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.07 E-value=3.1e-10 Score=89.12 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=53.5
Q ss_pred CcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 44 AEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 44 ~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
++|+++|++++|++ |..+ ..+...+||+++|+|++++|||.++.+++.||+|.+|+ .+++.||+
T Consensus 3 ~~il~iG~~~iD~~------~~~~----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~ 70 (304)
T PRK09434 3 NKVWVLGDAVVDLI------PEGE----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVD 70 (304)
T ss_pred CcEEEecchheeee------cCCC----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCC
Confidence 48999999999998 1111 23567799999999999999999999999999999997 45567775
No 34
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.07 E-value=3.6e-10 Score=92.55 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=52.9
Q ss_pred ccCCCCCCcEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChh
Q 033400 37 QLQKQEAAEPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 107 (120)
Q Consensus 37 ~~~~~~~~~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~ 107 (120)
++++.+.++|+|||.+++|+++++ |+. ....+||+++|+|++++|||.++.++|+||+|..
T Consensus 5 ~~~~~~~~~vlvvG~~~~D~i~~~------g~~----~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~ 65 (335)
T PLN02630 5 SKRPIPQRRVLIVGNYCHDVLIQN------GSV----TAESLGGAASFISNVLDALSVECELVSKVGPDFL 65 (335)
T ss_pred CCCCCCCCCEEEEeeeeeeEEEeC------CcE----EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc
Confidence 456677899999999999999875 321 5678999999999999999999999999999953
No 35
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=98.99 E-value=1.2e-09 Score=79.62 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=51.0
Q ss_pred cEEEEccccceeeeecCCCCCCCCcee-ceeeEecCChHHHHHHHHHHcCCCcEEEE
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~-~~~~~~~GG~aaNvAvalaRLG~~v~lvs 100 (120)
+|+++|..++|++++++++|.+++... .+....+||+|.|+|.+++|||.++.+++
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE
Confidence 589999999999999998888876654 58899999999999999999999999988
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=98.91 E-value=3.8e-09 Score=83.69 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=59.2
Q ss_pred EE-EEccccceeeeecCCCCCCCCcee-ceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc---cHHhcCcc
Q 033400 46 PM-IIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY---CWNTGNLL 117 (120)
Q Consensus 46 Vl-vvGs~~iDii~~v~~~p~~g~~~~-~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~---~~~~~~~~ 117 (120)
|+ |.=+.++|+++.++++| .++... ..+.+.+||+++|+|++++|||.++.++|.||+|.+|+ .|++.||+
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~~~~l~~~gv~ 80 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIA 80 (312)
T ss_pred EEEEecChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHHHHHHHHcCCC
Confidence 44 55678999999999987 455544 58899999999999999999999999999999999997 44455664
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=98.89 E-value=2.3e-09 Score=84.16 Aligned_cols=66 Identities=18% Similarity=0.088 Sum_probs=54.6
Q ss_pred ccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 50 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 50 Gs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
=++++|++++++++ ..++.... +....+||.++|+|++++|||.++.++|.||+| +|+ .+++.||+
T Consensus 6 ~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~ 76 (303)
T TIGR03168 6 LNPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIK 76 (303)
T ss_pred cchHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCC
Confidence 35789999999996 44555544 788999999999999999999999999999999 787 44556654
No 38
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.87 E-value=2.9e-09 Score=82.74 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=48.4
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
.|+|+|.+++|++-. . .......+||+++|+|++++||| ++.+++.||+| +|+ .+++.||+
T Consensus 1 ~v~~~G~~~~D~~~~------~----~~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~ 65 (277)
T cd01946 1 SLLVVGSVAFDAIET------P----FGKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIV 65 (277)
T ss_pred CeEEEEEeeeeeecC------C----CceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCc
Confidence 389999999999911 1 11245779999999999999998 69999999999 786 45556654
No 39
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.86 E-value=2.8e-09 Score=91.82 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=67.8
Q ss_pred hhccccccccCCCCCCcEEEEccccceeeeecCCCCCC-CCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChh
Q 033400 29 HKVALSKLQLQKQEAAEPMIIGGMVLDIHATPSIPANP-RTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 107 (120)
Q Consensus 29 ~~~~~~~~~~~~~~~~~VlvvGs~~iDii~~v~~~p~~-g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~ 107 (120)
.+|+..+.... +-+|||+..+|+.+..+..... |.++.....+..||+|.|.|.+++|||.++.|||+||+|..
T Consensus 331 ~~s~~~~~~~~-----KPv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n 405 (614)
T KOG3009|consen 331 SQSQPTASTTR-----KPVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNN 405 (614)
T ss_pred cCCCCcccccc-----CceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCc
Confidence 44554444444 4499999999999999986554 88899999999999999999999999999999999999988
Q ss_pred cccHHhc
Q 033400 108 IYCWNTG 114 (120)
Q Consensus 108 G~~~~~~ 114 (120)
|++.++.
T Consensus 406 ~~~~~~~ 412 (614)
T KOG3009|consen 406 GHFFRQN 412 (614)
T ss_pred chhhhhh
Confidence 8866553
No 40
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=98.83 E-value=8.5e-09 Score=81.58 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=56.1
Q ss_pred EEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 48 IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 48 vvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
|.=+.++|+.+.++..+..+.....++...+||+++|+|++++|||.++.++|.+|+| +|+ .+++.||+
T Consensus 4 ~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~ 76 (309)
T TIGR01231 4 VTLNPSVDISYPLTALKLDTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIK 76 (309)
T ss_pred EEcchHHeEEEEcCCeeeCceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCc
Confidence 3446789999999987766644334789999999999999999999999999999975 897 45556665
No 41
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=98.83 E-value=6.9e-09 Score=82.10 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=54.0
Q ss_pred EEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHH
Q 033400 47 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWN 112 (120)
Q Consensus 47 lvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~ 112 (120)
.+.-+.++|.++.++.++..+......+...+||+++|+|++++|||.++.++|.||+ .+|+.++
T Consensus 4 ~~t~np~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~ 68 (309)
T PRK13508 4 TVTLNPSIDISYPLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIA 68 (309)
T ss_pred EEecChHHeEEEEeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHH
Confidence 4667889999999998766653233478899999999999999999999999999996 6798443
No 42
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=98.80 E-value=1.8e-08 Score=83.11 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=58.5
Q ss_pred CCCCcEEEEc-cccceeeeecCC-C------CCCCCcee-----------------------ceeeEecCChHHHHHHHH
Q 033400 41 QEAAEPMIIG-GMVLDIHATPSI-P------ANPRTTTL-----------------------GKANYVLGGVARNVAECM 89 (120)
Q Consensus 41 ~~~~~VlvvG-s~~iDii~~v~~-~------p~~g~~~~-----------------------~~~~~~~GG~aaNvAval 89 (120)
+++++|+++| +..+|+...++. + ++.+.... ......+||+++|+|+++
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~l 96 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGL 96 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHH
Confidence 4577899999 999999999862 2 11111110 125567999999999999
Q ss_pred HH-cCCCcEEEEeecCChhccc----HHhcCcc
Q 033400 90 SK-LGAKPYMISALGLDMEIYC----WNTGNLL 117 (120)
Q Consensus 90 aR-LG~~v~lvs~VGdD~~G~~----~~~~~~~ 117 (120)
++ ||.++.++|+||+|.+|++ +++.||+
T Consensus 97 a~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~ 129 (367)
T PLN02379 97 SAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVD 129 (367)
T ss_pred HHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCC
Confidence 96 9999999999999999984 4456665
No 43
>PRK15074 inosine/guanosine kinase; Provisional
Probab=98.74 E-value=2.9e-08 Score=84.26 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=52.9
Q ss_pred CCCcEEEEccccceeeeecCC-C------CCCCCceece----------------eeEecCChHHHHHHHHHHcC-CCcE
Q 033400 42 EAAEPMIIGGMVLDIHATPSI-P------ANPRTTTLGK----------------ANYVLGGVARNVAECMSKLG-AKPY 97 (120)
Q Consensus 42 ~~~~VlvvGs~~iDii~~v~~-~------p~~g~~~~~~----------------~~~~~GG~aaNvAvalaRLG-~~v~ 97 (120)
++-+|+++|+..+|+...++. + .+.+...... ....+||+++|+|++++||| .++.
T Consensus 32 ~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~~ 111 (434)
T PRK15074 32 SRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRSV 111 (434)
T ss_pred CCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCeE
Confidence 456899999999999999862 1 1122221111 24458999999999999996 9999
Q ss_pred EEEeecCC-hhccc
Q 033400 98 MISALGLD-MEIYC 110 (120)
Q Consensus 98 lvs~VGdD-~~G~~ 110 (120)
|+|+||+| .+|++
T Consensus 112 fig~VGdDd~~G~~ 125 (434)
T PRK15074 112 LLGVMSSNIEIGSY 125 (434)
T ss_pred EEEEeCCCHHHHHH
Confidence 99999999 69975
No 44
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=2.8e-08 Score=84.46 Aligned_cols=72 Identities=26% Similarity=0.354 Sum_probs=59.1
Q ss_pred CCCCcEEEEccccceeeeecC-CCCCCCCcee---c-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHh
Q 033400 41 QEAAEPMIIGGMVLDIHATPS-IPANPRTTTL---G-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNT 113 (120)
Q Consensus 41 ~~~~~VlvvGs~~iDii~~v~-~~p~~g~~~~---~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~ 113 (120)
-+..+|+|+|.+++|.+++.. ....|+...| . +....+||.| |+|-+++.||.++.++|.+|+|..|+.+++
T Consensus 8 f~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGAa-NVa~NiasLGa~a~l~GvvG~Deag~~L~~ 84 (467)
T COG2870 8 FKQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGAA-NVAKNIASLGANAYLVGVVGKDEAGKALIE 84 (467)
T ss_pred hcCCcEEEEcceeeeeeccccccccCCCCCCceEEecccccccccHH-HHHHHHHHcCCCEEEEEeeccchhHHHHHH
Confidence 457899999999999999988 3334444433 2 6788899985 999999999999999999999999985543
No 45
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=98.70 E-value=3.2e-08 Score=78.30 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=56.7
Q ss_pred EEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 48 IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 48 vvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
|.=+..+|+++.+++.+..+.....+....+||+++|+|++++|||.++.+++.+|+ .+|+ .|++.||+
T Consensus 7 ~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~ 79 (309)
T PRK10294 7 LTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVP 79 (309)
T ss_pred EecChHHeEEEEeCceeeCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCC
Confidence 445678999999998764444455688888999999999999999999999999996 7898 45556664
No 46
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=98.58 E-value=2.7e-08 Score=80.39 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=51.4
Q ss_pred cEEEEccccceeeeecCCCCCCCCceeceeeEecCChHHHHHHHHHHc-CC--Cc--EEEEeecCChhcc----cHHhcC
Q 033400 45 EPMIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKL-GA--KP--YMISALGLDMEIY----CWNTGN 115 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~p~~g~~~~~~~~~~~GG~aaNvAvalaRL-G~--~v--~lvs~VGdD~~G~----~~~~~~ 115 (120)
+++++|.+.+|++..... ..+...+||+++|+|+++++| |. ++ .+++++|+| +|+ .|+..|
T Consensus 1 ~~~~~G~~~~d~i~~~~~---------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~G 70 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS---------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWG 70 (328)
T ss_pred CccccCcEEeeccccCCC---------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcC
Confidence 478999999999987662 346677999999999999999 54 77 889999999 998 455566
Q ss_pred cc
Q 033400 116 LL 117 (120)
Q Consensus 116 ~~ 117 (120)
|+
T Consensus 71 Vd 72 (328)
T cd01943 71 TG 72 (328)
T ss_pred Cc
Confidence 64
No 47
>PLN02548 adenosine kinase
Probab=98.33 E-value=2.1e-07 Score=74.32 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=42.1
Q ss_pred CCCCCCCcee-ceeeEecCChHHHHHH---HHHHcCCCcEEEEeecCChhcc----cHHhcCcc
Q 033400 62 IPANPRTTTL-GKANYVLGGVARNVAE---CMSKLGAKPYMISALGLDMEIY----CWNTGNLL 117 (120)
Q Consensus 62 ~~p~~g~~~~-~~~~~~~GG~aaNvAv---alaRLG~~v~lvs~VGdD~~G~----~~~~~~~~ 117 (120)
+.|.+++... ......+||+++|+|. .++++|.++.|+|.||+|.+|+ .|++.||+
T Consensus 34 ~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd 97 (332)
T PLN02548 34 HLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVN 97 (332)
T ss_pred HHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCc
Confidence 3444444433 3688899999999754 4567799999999999999998 55556765
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=1.7e-05 Score=64.31 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=56.4
Q ss_pred CCcEEEEccccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhcc
Q 033400 43 AAEPMIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY 109 (120)
Q Consensus 43 ~~~VlvvGs~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~ 109 (120)
.+.|+|||.+.+|++-.++.+|.+++.... +-.-.-||.++|++..+.+||.++.|.|.+-....-+
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~ 71 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFR 71 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHH
Confidence 468999999999999999999988766553 5555679999999999999999999999987544443
No 49
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.0018 Score=53.51 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=50.9
Q ss_pred cccceeeeecCCCCCCCCceec-eeeEecCChHHHHHHHHHHcCCCcEEEEeecCChhc---ccHHhcCc
Q 033400 51 GMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEI---YCWNTGNL 116 (120)
Q Consensus 51 s~~iDii~~v~~~p~~g~~~~~-~~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G---~~~~~~~~ 116 (120)
+..+|++++.+. ...|+.+.. +....+||+|.|||..|++||.++.-.+.+|.+.-- +.++..||
T Consensus 8 NPaiD~~~~l~~-l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi 76 (310)
T COG1105 8 NPALDYTVFLDE-LELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGI 76 (310)
T ss_pred ChhHhheeeccc-ccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCC
Confidence 457899988844 355667664 889999999999999999999999999999987432 34555554
No 50
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0037 Score=52.21 Aligned_cols=69 Identities=20% Similarity=0.150 Sum_probs=53.3
Q ss_pred cEEEEccccceeeeecCCC-----C-CCCCcee---------------ceeeEecCChHHHHHHHHHHcCC---CcEEEE
Q 033400 45 EPMIIGGMVLDIHATPSIP-----A-NPRTTTL---------------GKANYVLGGVARNVAECMSKLGA---KPYMIS 100 (120)
Q Consensus 45 ~VlvvGs~~iDii~~v~~~-----p-~~g~~~~---------------~~~~~~~GG~aaNvAvalaRLG~---~v~lvs 100 (120)
-.+..|...+|+...++.. . ..++... .+.....||++-|.+..+++++- .+.|+|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 3456899999999988832 1 1222211 14678899999999999999987 899999
Q ss_pred eecCChhcccHHh
Q 033400 101 ALGLDMEIYCWNT 113 (120)
Q Consensus 101 ~VGdD~~G~~~~~ 113 (120)
+||+|.+|+.+++
T Consensus 88 svG~Dk~ge~l~~ 100 (343)
T KOG2854|consen 88 SVGKDKFGELLKS 100 (343)
T ss_pred eccCchHHHHHHH
Confidence 9999999996554
No 51
>PRK14746 RepA leader peptide Tap; Provisional
Probab=74.81 E-value=2.4 Score=22.81 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhh
Q 033400 7 QERLNAVFRHLL 18 (120)
Q Consensus 7 ~~~~~~~~~~~~ 18 (120)
+||+|.++||++
T Consensus 2 ~RK~Q~l~~~lL 13 (26)
T PRK14746 2 FRKVQYLLRLLL 13 (26)
T ss_pred cHHHHHHHHHHH
Confidence 689999999976
No 52
>PRK14745 RepA leader peptide Tap; Provisional
Probab=65.95 E-value=5.2 Score=21.46 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=10.3
Q ss_pred HHHHHHHH-HHhh
Q 033400 7 QERLNAVF-RHLL 18 (120)
Q Consensus 7 ~~~~~~~~-~~~~ 18 (120)
+||+|.+| ||++
T Consensus 2 lrk~qylfl~hll 14 (26)
T PRK14745 2 LRKFQYLFLWHLL 14 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 68999999 8876
No 53
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=58.34 E-value=15 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcccc
Q 033400 79 GGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 119 (120)
Q Consensus 79 GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~~ 119 (120)
+|.+...+..+...|.++.+++.+|...... +++.||..|
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~a~~~-l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGPAAAK-LEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCccHHHH-HHHcCCEEE
Confidence 4667788899999999999999999876655 777787665
No 54
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.51 E-value=20 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=17.3
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEe
Q 033400 78 LGGVARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG~~v~lvs~ 101 (120)
.|+.|...|+.+++.|.+|.++.+
T Consensus 43 ~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 43 TGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEec
Confidence 455667777777777888887754
No 55
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=45.77 E-value=21 Score=27.52 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.+|++.|.+|.+|-
T Consensus 17 ~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 17 SSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 7899999999999988773
No 56
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=44.02 E-value=20 Score=27.25 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.1
Q ss_pred eEecCChHHHHHHHHHHcCCC
Q 033400 75 NYVLGGVARNVAECMSKLGAK 95 (120)
Q Consensus 75 ~~~~GG~aaNvAvalaRLG~~ 95 (120)
-.-.||.|+++|..|+|.|..
T Consensus 26 IvG~GglGs~ia~~La~~Gvg 46 (200)
T TIGR02354 26 ICGLGGLGSNVAINLARAGIG 46 (200)
T ss_pred EECcCHHHHHHHHHHHHcCCC
Confidence 345799999999999999984
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=42.40 E-value=19 Score=29.30 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCCCcEEEE
Q 033400 81 VARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lvs 100 (120)
++.|+|++|++.|.+|.++-
T Consensus 17 va~~lA~aLa~~G~kVg~lD 36 (261)
T PF09140_consen 17 VAVNLAVALARMGKKVGLLD 36 (261)
T ss_dssp HHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999987764
No 58
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=41.41 E-value=28 Score=25.07 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=35.9
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcccc
Q 033400 76 YVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 119 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~~ 119 (120)
....|.|.-+|..|...|.++.+++.+|.-.+.. |++.||..|
T Consensus 48 ~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~-l~~~GIkv~ 90 (121)
T COG1433 48 SAEKGAGIRIAELLVDEGVDVVIASNIGPNAYNA-LKAAGIKVY 90 (121)
T ss_pred cccCcchHHHHHHHHHcCCCEEEECccCHHHHHH-HHHcCcEEE
Confidence 3457888888999999999999999999887765 888888766
No 59
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=40.47 E-value=30 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCCcEEEEeecC
Q 033400 81 VARNVAECMSKLGAKPYMISALGL 104 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lvs~VGd 104 (120)
.++|.+.+++..|.+|.+||+=-+
T Consensus 16 ~~~Nlsaala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 16 TASNLSAALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp HHHHHHHHHHHTT--EEEEEESSS
T ss_pred hhhHHHHHHHhccceeeEecccCC
Confidence 368999999999999999887443
No 60
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=37.12 E-value=37 Score=23.85 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.0
Q ss_pred ecCCh-----HHHHHHHHHHcCCCcEEEE
Q 033400 77 VLGGV-----ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 77 ~~GG~-----aaNvAvalaRLG~~v~lvs 100 (120)
.-||+ +.|.|..+++.|.+|.++-
T Consensus 7 ~kgG~GKtt~a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 7 GKGGVGKTTTTANLGTALAQLGYKVVLID 35 (179)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34665 6899999999999999984
No 61
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=35.63 E-value=6.8 Score=34.80 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhcCC
Q 033400 5 SVQERLNAVFRHLLQQP 21 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (120)
-|+.||||+|||+-|.+
T Consensus 207 Ma~nKLNVlHWHivDs~ 223 (542)
T KOG2499|consen 207 MAANKLNVLHWHIVDSQ 223 (542)
T ss_pred HHhhhhceeEEEeecCC
Confidence 47889999999998865
No 62
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=33.30 E-value=41 Score=26.12 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 033400 82 ARNVAECMSKLGAKPYMI 99 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lv 99 (120)
+.|.|.+|++.|.+|.++
T Consensus 18 a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 18 TQNLTAALSTMGNKILLV 35 (273)
T ss_pred HHHHHHHHHhhCCCeEEE
Confidence 579999999999999888
No 63
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.88 E-value=43 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCCcEEE
Q 033400 81 VARNVAECMSKLGAKPYMI 99 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lv 99 (120)
.+.|.|.+|++.|.+|.+|
T Consensus 17 ~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 17 TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3689999999999998887
No 64
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.69 E-value=44 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
+.|.|.+|++.|.+|.+|..
T Consensus 17 a~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 17 SCNISIALARRGKKVLQIGC 36 (290)
T ss_pred HHHHHHHHHHCCCeEEEEec
Confidence 78999999999999877643
No 65
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=31.57 E-value=38 Score=25.10 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhcC
Q 033400 5 SVQERLNAVFRHLLQQ 20 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (120)
..+|||+.+|+||-..
T Consensus 69 D~~KRL~iLfd~ln~g 84 (157)
T PF07304_consen 69 DIEKRLNILFDHLNNG 84 (157)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5789999999999654
No 66
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism]
Probab=31.45 E-value=49 Score=28.38 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhccccccccCCCCCCcEEEEccc
Q 033400 7 QERLNAVFRHLLQQPCEANPVLHKVALSKLQLQKQEAAEPMIIGGM 52 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlvvGs~ 52 (120)
.+|++++.+||- |..+.|.++-+++.+-.+... .-+|++|+..
T Consensus 2 ~er~~~ll~hl~--~~s~s~~~~a~~c~s~~~~~~-~~DVViVaa~ 44 (435)
T KOG1389|consen 2 MERQQVLLRHLR--PSSSSASLSASACLSGDSAAS-AEDVVIVAAL 44 (435)
T ss_pred chHHHHHHHhcC--CcccccccccccccccCcccc-ccCEEEEeec
Confidence 589999999984 444558888888876555533 3577777653
No 67
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.44 E-value=60 Score=21.02 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcccc
Q 033400 80 GVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 119 (120)
Q Consensus 80 G~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~~ 119 (120)
|.+...+..|...|.++.+++.+|.-... .+++.||..|
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~~~~-~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPRALN-KLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcCHHH-HHHHCCCEEE
Confidence 44567788888899999999999966554 4777777654
No 68
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.81 E-value=21 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=30.9
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcccc
Q 033400 77 VLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 119 (120)
Q Consensus 77 ~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~~ 119 (120)
..+|.+...+-.|...|.++.+++.+|...+. .|++.||.-|
T Consensus 37 ~~~~~~~~~~~~l~~~~v~~li~~~iG~~~~~-~L~~~gI~v~ 78 (94)
T PF02579_consen 37 EGGGGGDKIAKFLAEEGVDVLICGGIGEGAFR-ALKEAGIKVY 78 (94)
T ss_dssp CSSCHSTHHHHHHHHTTESEEEESCSCHHHHH-HHHHTTSEEE
T ss_pred cccccchhHHHHHHHcCCCEEEEeCCCHHHHH-HHHHCCCEEE
Confidence 34577777788888899999999999876554 4666676544
No 69
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=30.40 E-value=53 Score=23.46 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|..+++.|.+|.+|-
T Consensus 17 a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 17 AVNLALALAKLGYKVGLLD 35 (169)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 5799999999999999985
No 70
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=30.00 E-value=51 Score=24.92 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCcEEEEeecCChhcccHHhcCcc
Q 033400 84 NVAECMSKLGAKPYMISALGLDMEIYCWNTGNLL 117 (120)
Q Consensus 84 NvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~ 117 (120)
|++..|+-+|.+..+|-..|=+..-++++.+|++
T Consensus 18 NI~R~ca~tga~LhlI~PlGF~l~dk~lkRAGlD 51 (155)
T COG0219 18 NIIRTCAATGAELHLIEPLGFDLDDKRLKRAGLD 51 (155)
T ss_pred HHHHHHHhcCCeEEEEccCCCccchhhhhhcccc
Confidence 9999999999999999999988888888888876
No 71
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=29.63 E-value=44 Score=26.98 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.0
Q ss_pred EecCChHHHHHHHHHHcCC
Q 033400 76 YVLGGVARNVAECMSKLGA 94 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~ 94 (120)
.-.||.|..+|.+|+|.|.
T Consensus 36 vG~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 36 VGIGGVGSWAAEALARTGI 54 (268)
T ss_pred ECcCHHHHHHHHHHHHcCC
Confidence 3589999999999999994
No 72
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.32 E-value=53 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.+|++.|.+|.+|-
T Consensus 17 a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 17 SSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 6899999999999988773
No 73
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=28.20 E-value=58 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.7
Q ss_pred EecCChHHHHHHHHHHcCCC
Q 033400 76 YVLGGVARNVAECMSKLGAK 95 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~ 95 (120)
.-.||.|+.+|..|+|.|..
T Consensus 5 iG~GglGs~ia~~La~~Gvg 24 (174)
T cd01487 5 AGAGGLGSNIAVLLARSGVG 24 (174)
T ss_pred ECcCHHHHHHHHHHHHcCCC
Confidence 35799999999999999985
No 74
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.77 E-value=54 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.5
Q ss_pred EecCChHHHHHHHHHHcCCC
Q 033400 76 YVLGGVARNVAECMSKLGAK 95 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~ 95 (120)
.-.||.|..+|.+|++.|..
T Consensus 5 iG~GglGs~ia~~L~~~Gv~ 24 (143)
T cd01483 5 VGLGGLGSEIALNLARSGVG 24 (143)
T ss_pred ECCCHHHHHHHHHHHHCCCC
Confidence 34799999999999999983
No 75
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.72 E-value=63 Score=22.66 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=22.8
Q ss_pred eeEecCChHHHHHHHHHHcCCC-cEEEEe
Q 033400 74 ANYVLGGVARNVAECMSKLGAK-PYMISA 101 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~~-v~lvs~ 101 (120)
.-.-.||.|.-++.+|..+|.+ +.++.+
T Consensus 16 lviGaGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 16 LVIGAGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp EEESSSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred EEECCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4455799999999999999988 666654
No 76
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.59 E-value=64 Score=28.48 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=26.0
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCccc
Q 033400 78 LGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~ 118 (120)
.|+.|.-.|+.+++.|.+|.++.+-.....+..+...|+.+
T Consensus 20 ~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a 60 (598)
T PRK09078 20 AGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISA 60 (598)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCccc
Confidence 45577888888889999998887743222223444455543
No 77
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.54 E-value=57 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCCCcEEEEe
Q 033400 81 VARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lvs~ 101 (120)
.+.|.|.+++++|.+|.++-+
T Consensus 74 va~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 74 VAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred HHHHHHHHHHhcCCcEEEEeC
Confidence 358999999999999988754
No 78
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=27.47 E-value=55 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 033400 82 ARNVAECMSKLGAKPYMI 99 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lv 99 (120)
+.|.|.+|++.|.+|.+|
T Consensus 18 a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 18 VCNIAAALAESGKKVLVV 35 (279)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 589999999999998877
No 79
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=27.35 E-value=53 Score=29.52 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=27.4
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCc
Q 033400 76 YVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNL 116 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~ 116 (120)
.-.|+.|...|+.++..|.+|.++++.........+...|+
T Consensus 11 IG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi 51 (657)
T PRK08626 11 IGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGM 51 (657)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhH
Confidence 34566788888889999999999987654332233444444
No 80
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=27.17 E-value=62 Score=24.08 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.++++.|.+|.+|-
T Consensus 17 ~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 17 SQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 5799999999999988773
No 81
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=26.95 E-value=55 Score=26.89 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHcCCCcEEEEee
Q 033400 81 VARNVAECMSKLGAKPYMISAL 102 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lvs~V 102 (120)
...|+|.+|+.+|.++-+||+=
T Consensus 17 ts~N~aAAla~~GkkVl~vGCD 38 (278)
T COG1348 17 TSQNLAAALAELGKKVLIVGCD 38 (278)
T ss_pred hHHHHHHHHHHcCCeEEEEcCC
Confidence 3589999999999999988763
No 82
>PRK06126 hypothetical protein; Provisional
Probab=26.85 E-value=1e+02 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHcCCCcEEEEe
Q 033400 81 VARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 81 ~aaNvAvalaRLG~~v~lvs~ 101 (120)
+|.-.|+.|+|.|+++.++-+
T Consensus 18 aGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 18 VGLALALDLGRRGVDSILVER 38 (545)
T ss_pred HHHHHHHHHHHCCCcEEEEeC
Confidence 344455555555555555543
No 83
>PHA02518 ParA-like protein; Provisional
Probab=26.59 E-value=62 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
++|.|..+++.|.+|.+|-.
T Consensus 18 a~~la~~la~~g~~vlliD~ 37 (211)
T PHA02518 18 ATNLASWLHADGHKVLLVDL 37 (211)
T ss_pred HHHHHHHHHhCCCeEEEEeC
Confidence 57999999999999988765
No 84
>PLN02312 acyl-CoA oxidase
Probab=26.52 E-value=63 Score=29.40 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCCcchhhccccc
Q 033400 1 MDSSSVQERLNAVFRHLLQQPCEANPVLHKVALSK 35 (120)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (120)
|+++-++||+.++-.||...+-.-+--+..+||..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (680)
T PLN02312 5 MSPSAAARRAHVLANHLAQSPPSPNSSLTPSPCLQ 39 (680)
T ss_pred cchhHHHHHHHHHHHhccCCCCCCcccCCchhhhh
Confidence 67888999999999999652222222255555554
No 85
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=26.52 E-value=80 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=16.0
Q ss_pred eeEecCChH-HHHHHHHHHcCCCcEEEEe
Q 033400 74 ANYVLGGVA-RNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 74 ~~~~~GG~a-aNvAvalaRLG~~v~lvs~ 101 (120)
..+.-||.| +-.|..|++.|.+|.++=+
T Consensus 42 ViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 42 VAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 444445543 3334467777777777754
No 86
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.24 E-value=63 Score=24.86 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.++++.|.+|.+|-
T Consensus 19 ~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 19 SSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 5899999999999988874
No 87
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.09 E-value=64 Score=28.42 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=25.9
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcc
Q 033400 78 LGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLL 117 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~ 117 (120)
.|+.|.-.|+.+++.|.+|.++.+-.-..-...+...|+.
T Consensus 11 ~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~ 50 (589)
T PRK08641 11 GGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGIN 50 (589)
T ss_pred chHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeE
Confidence 4556777888899999999999865432222234444443
No 88
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=26.00 E-value=1.1e+02 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHcCCCcEEEEee
Q 033400 80 GVARNVAECMSKLGAKPYMISAL 102 (120)
Q Consensus 80 G~aaNvAvalaRLG~~v~lvs~V 102 (120)
|.|...|+.+++.|.+|.++-+-
T Consensus 16 GaGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 16 GGGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred hHHHHHHHHHHHCCCcEEEEecC
Confidence 38888899999999999998854
No 89
>PRK13236 nitrogenase reductase; Reviewed
Probab=25.98 E-value=70 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.+|++.|.+|.++-
T Consensus 23 a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 23 SQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 5899999999999998883
No 90
>PRK11670 antiporter inner membrane protein; Provisional
Probab=25.64 E-value=64 Score=26.91 Aligned_cols=34 Identities=32% Similarity=0.278 Sum_probs=24.9
Q ss_pred eeeEecCCh-----HHHHHHHHHHcCCCcEEEEeecCChhcc
Q 033400 73 KANYVLGGV-----ARNVAECMSKLGAKPYMISALGLDMEIY 109 (120)
Q Consensus 73 ~~~~~~GG~-----aaNvAvalaRLG~~v~lvs~VGdD~~G~ 109 (120)
.+...=||+ +.|.|.+|++.|.+|.++-+ |..|.
T Consensus 111 aV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~---D~qgp 149 (369)
T PRK11670 111 AVSSGKGGVGKSSTAVNLALALAAEGAKVGILDA---DIYGP 149 (369)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC---CCCCC
Confidence 455555665 58999999999999888754 55543
No 91
>CHL00175 minD septum-site determining protein; Validated
Probab=25.58 E-value=1.1e+02 Score=23.67 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred eeeEecCCh-----HHHHHHHHHHcCCCcEEEE
Q 033400 73 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 73 ~~~~~~GG~-----aaNvAvalaRLG~~v~lvs 100 (120)
.+.-.-||+ ++|.|.++++.|.+|.+|-
T Consensus 19 ~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD 51 (281)
T CHL00175 19 VITSGKGGVGKTTTTANLGMSIARLGYRVALID 51 (281)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 445556776 6899999999999988874
No 92
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.53 E-value=65 Score=24.51 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
+.|.|.+|++.|.+|.+|-.
T Consensus 18 ~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 18 TQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred HHHHHHHHHhCCCeEEEEEc
Confidence 58999999999999988743
No 93
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=25.47 E-value=1.1e+02 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.2
Q ss_pred eeEecCChHHHHHHHHHHcCCCcEEEEee
Q 033400 74 ANYVLGGVARNVAECMSKLGAKPYMISAL 102 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~~v~lvs~V 102 (120)
+.-..||+..|+|..+...+-.+.+|+-+
T Consensus 65 ltDl~GGSP~N~A~~l~~~~~~~~viaGv 93 (143)
T COG2893 65 LTDLFGGSPFNVASRLAMEGPRVEVIAGV 93 (143)
T ss_pred EEecCCCCHhHHHHHHHhhCCCceEEecC
Confidence 56678999999999999999887777643
No 94
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.01 E-value=66 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.++++.|.+|.+|.
T Consensus 21 ~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 21 SQNTLAALVEMGQKILIVG 39 (295)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 5799999999999988883
No 95
>PRK05855 short chain dehydrogenase; Validated
Probab=24.95 E-value=2.3e+02 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEe
Q 033400 78 LGGVARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG~~v~lvs~ 101 (120)
.||-|..+|..+++.|.++.+++.
T Consensus 324 s~giG~~~a~~l~~~G~~v~~~~r 347 (582)
T PRK05855 324 GSGIGRETALAFAREGAEVVASDI 347 (582)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeC
Confidence 478888888889998988777665
No 96
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=24.78 E-value=73 Score=28.34 Aligned_cols=44 Identities=25% Similarity=0.119 Sum_probs=29.2
Q ss_pred eEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCccc
Q 033400 75 NYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118 (120)
Q Consensus 75 ~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~ 118 (120)
.+-.|+.|.-.|+.++..|.+|.++.+-.....+..+...|+.+
T Consensus 34 VIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a 77 (617)
T PTZ00139 34 VVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINA 77 (617)
T ss_pred EECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeE
Confidence 34456677788888888899999988754332233555566654
No 97
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=24.43 E-value=1e+02 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=26.9
Q ss_pred eeEecCChHHHHHHHHHHcCCCcEEEEeecCC
Q 033400 74 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 105 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD 105 (120)
...-.||.|.+.|+.++..|.+|.+++++=--
T Consensus 10 vVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 10 VVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred EEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 44557999999999999999999999987543
No 98
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=24.35 E-value=70 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.7
Q ss_pred eeEecCChHHHHHHHHHHcCCC
Q 033400 74 ANYVLGGVARNVAECMSKLGAK 95 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~~ 95 (120)
.-.-+||.|..+|..|+++|..
T Consensus 25 livG~GglGs~va~~La~~Gvg 46 (228)
T cd00757 25 LVVGAGGLGSPAAEYLAAAGVG 46 (228)
T ss_pred EEECCCHHHHHHHHHHHHcCCC
Confidence 3456899999999999999963
No 99
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=24.21 E-value=74 Score=22.00 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.2
Q ss_pred EecCChHHHHHHHHHHcCC
Q 033400 76 YVLGGVARNVAECMSKLGA 94 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~ 94 (120)
.-.||.|+.+|.+|++.|.
T Consensus 8 iG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 8 IGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp ESTSHHHHHHHHHHHHHTT
T ss_pred ECcCHHHHHHHHHHHHhCC
Confidence 4578999999999999998
No 100
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.97 E-value=72 Score=24.65 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
+.|.|.++++.|.+|.+|-.
T Consensus 121 a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 121 AANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred HHHHHHHHHhcCCeEEEEeC
Confidence 67999999999999999855
No 101
>PRK10262 thioredoxin reductase; Provisional
Probab=23.88 E-value=1.3e+02 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.5
Q ss_pred eceeeEecCC-hHHHHHHHHHHcCCCcEEEE
Q 033400 71 LGKANYVLGG-VARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 71 ~~~~~~~~GG-~aaNvAvalaRLG~~v~lvs 100 (120)
..++...-|| .|.+.|..++|.|+++.++-
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 3456666677 55788888999999988874
No 102
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.82 E-value=79 Score=27.70 Aligned_cols=41 Identities=17% Similarity=-0.024 Sum_probs=26.2
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCcc
Q 033400 77 VLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLL 117 (120)
Q Consensus 77 ~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~ 117 (120)
-.|+.|.-.|+.+++.|.+|.++.+-.....+..+...|+.
T Consensus 12 G~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~ 52 (566)
T PRK06452 12 GGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIA 52 (566)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchh
Confidence 35667777888888899999999875332222244444444
No 103
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=23.61 E-value=74 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.+|++.|.+|.+|-
T Consensus 17 a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 17 TQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 5799999999999988873
No 104
>PRK10037 cell division protein; Provisional
Probab=23.56 E-value=77 Score=24.28 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
+.|.|.+|++.|.+|.+|-.
T Consensus 19 a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 19 TAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred HHHHHHHHHhcCCcEEEEeC
Confidence 58999999999999988843
No 105
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.10 E-value=71 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.3
Q ss_pred eeEecCChHHHHHHHHHHcCC
Q 033400 74 ANYVLGGVARNVAECMSKLGA 94 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~ 94 (120)
...-.||.|..+|..|++.|.
T Consensus 25 lviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 25 LIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred EEECCCHHHHHHHHHHHHcCC
Confidence 445689999999999999997
No 106
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.73 E-value=84 Score=27.75 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=26.4
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCccc
Q 033400 78 LGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118 (120)
Q Consensus 78 ~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~ 118 (120)
.|+.|.-.|+.++..|.+|.++.+-....-+..+..+|+.+
T Consensus 15 ~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a 55 (588)
T PRK08958 15 AGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITV 55 (588)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhh
Confidence 45566677788888899999888764433334455555533
No 107
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.62 E-value=1.2e+02 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred eEecCC-hHHHHHHHHHHcCCCcEEEEeec
Q 033400 75 NYVLGG-VARNVAECMSKLGAKPYMISALG 103 (120)
Q Consensus 75 ~~~~GG-~aaNvAvalaRLG~~v~lvs~VG 103 (120)
.+.-|| .|.=.|..|+|.|.++.++=+-.
T Consensus 5 ~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 5 AIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 344556 56778999999999998886643
No 108
>PF14948 RESP18: RESP18 domain
Probab=22.52 E-value=75 Score=22.54 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHhhcCC
Q 033400 3 SSSVQERLNAVFRHLLQQP 21 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (120)
++.+|.||++|++.|.-+-
T Consensus 17 s~pvlQrLQ~vLqqL~~qG 35 (105)
T PF14948_consen 17 SPPVLQRLQVVLQQLMPQG 35 (105)
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 5789999999999987654
No 109
>PRK08328 hypothetical protein; Provisional
Probab=22.40 E-value=80 Score=24.39 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.6
Q ss_pred EecCChHHHHHHHHHHcCCC
Q 033400 76 YVLGGVARNVAECMSKLGAK 95 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~ 95 (120)
.-.||.|+++|..|++.|..
T Consensus 33 iG~GGlGs~ia~~La~~Gvg 52 (231)
T PRK08328 33 VGVGGLGSPVAYYLAAAGVG 52 (231)
T ss_pred ECCCHHHHHHHHHHHHcCCC
Confidence 44799999999999999975
No 110
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=22.24 E-value=97 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.1
Q ss_pred eeEecCChHHHHHHHHHHcCC-CcEEEEeecCC
Q 033400 74 ANYVLGGVARNVAECMSKLGA-KPYMISALGLD 105 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~-~v~lvs~VGdD 105 (120)
.....||.|.-+|..++++|. +|.+.+++...
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k 133 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK 133 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcH
Confidence 358899999999999999999 88888776544
No 111
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.15 E-value=88 Score=23.34 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 033400 82 ARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs~ 101 (120)
+.|.|..+++.|.+|.+|-.
T Consensus 19 a~nla~~la~~g~~VlliD~ 38 (246)
T TIGR03371 19 TANLASALKLLGEPVLAIDL 38 (246)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 58999999999999888865
No 112
>PRK06153 hypothetical protein; Provisional
Probab=21.96 E-value=71 Score=27.50 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred eeEecCChHHHHHHHHHHcCCCcEEEEeecCC
Q 033400 74 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 105 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD 105 (120)
.-.-+||.|..++..|+|+|.. =+.-|-.|
T Consensus 180 aIVG~GG~GS~Va~~LAR~GVg--eI~LVD~D 209 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAKTPVR--EIHLFDGD 209 (393)
T ss_pred EEEcCCccHHHHHHHHHHcCCC--EEEEECCC
Confidence 4467999999999999999963 33344444
No 113
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=21.77 E-value=77 Score=24.48 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=22.7
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEE
Q 033400 76 YVLGGVARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~v~lvs 100 (120)
.+.||.|.-.|..+++.|.+|.+++
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEc
Confidence 4579999999999999999999986
No 114
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.60 E-value=1e+02 Score=27.66 Aligned_cols=44 Identities=20% Similarity=0.075 Sum_probs=29.6
Q ss_pred eEecCChHHHHHHHHHHcCCCcEEEEeecCChhcccHHhcCccc
Q 033400 75 NYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 118 (120)
Q Consensus 75 ~~~~GG~aaNvAvalaRLG~~v~lvs~VGdD~~G~~~~~~~~~~ 118 (120)
.+-.|+.|.-.|+.+++.|.+|.++.+-.-......+...|+.+
T Consensus 55 VIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a 98 (635)
T PLN00128 55 VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINA 98 (635)
T ss_pred EECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCcee
Confidence 34455567778899999999999999854322233555566654
No 115
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=21.15 E-value=72 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.4
Q ss_pred EecCChHHHHHHHHHHcCCCc--EEEEeecC
Q 033400 76 YVLGGVARNVAECMSKLGAKP--YMISALGL 104 (120)
Q Consensus 76 ~~~GG~aaNvAvalaRLG~~v--~lvs~VGd 104 (120)
...||.|..+|..++++|.+. .++..++.
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~ 116 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK 116 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 579999999999999999984 45555554
No 116
>PF14113 DUF4285: Domain of unknown function (DUF4285)
Probab=20.82 E-value=43 Score=23.49 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHcCCCcEEEE-----eecCChhcccHHhcCccccC
Q 033400 80 GVARNVAECMSKLGAKPYMIS-----ALGLDMEIYCWNTGNLLAYL 120 (120)
Q Consensus 80 G~aaNvAvalaRLG~~v~lvs-----~VGdD~~G~~~~~~~~~~~~ 120 (120)
-||.+++++|.+-|++..-.+ .-|.|.....++...|..||
T Consensus 6 ~CAiRmS~aL~~~G~~i~~~~~~~~~~~~~~g~~y~~ra~~l~~~L 51 (115)
T PF14113_consen 6 TCAIRMSYALNYSGIPIKSFSTLGRTVSGADGKWYIYRAEELANWL 51 (115)
T ss_pred hhHHHHHHHHHhCCCccCcccccceeccCCCCCchhhHHHHHHHHH
Confidence 378889999999998776655 33445555555655555553
No 117
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=20.68 E-value=1.3e+02 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=21.9
Q ss_pred eEecCC-hHHHHHHHHHHcCCCcEEEEe
Q 033400 75 NYVLGG-VARNVAECMSKLGAKPYMISA 101 (120)
Q Consensus 75 ~~~~GG-~aaNvAvalaRLG~~v~lvs~ 101 (120)
...-|| +|.-.|.+|++.|.+|.++-.
T Consensus 4 vVIGgGlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 4 HVIGGGLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 344555 788899999999999999973
No 118
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=20.32 E-value=99 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 033400 82 ARNVAECMSKLGAKPYMIS 100 (120)
Q Consensus 82 aaNvAvalaRLG~~v~lvs 100 (120)
+.|.|.++++.|.+|.+|-
T Consensus 18 a~~LA~~la~~g~~VlliD 36 (251)
T TIGR01969 18 TANLGVALAKLGKKVLALD 36 (251)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 5788999999999988874
No 119
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.28 E-value=94 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.2
Q ss_pred eeEecCChHHHHHHHHHHcCC
Q 033400 74 ANYVLGGVARNVAECMSKLGA 94 (120)
Q Consensus 74 ~~~~~GG~aaNvAvalaRLG~ 94 (120)
...-.||.|..+|.+|+|.|.
T Consensus 15 lVvG~GGvGs~va~~Lar~GV 35 (231)
T cd00755 15 AVVGLGGVGSWAAEALARSGV 35 (231)
T ss_pred EEECCCHHHHHHHHHHHHcCC
Confidence 345589999999999999996
Done!