BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033401
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P305|IGO2_YEAST mRNA stability protein IGO2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IGO2 PE=1 SV=3
Length = 131
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQQGVEK 74
+E L K YG + KK L K +R YFDS D+AL K+ GV K
Sbjct: 33 QELKLYKMYGKLPSKKDLLRHKMQDRQYFDSGDYAL-KKAGVIK 75
>sp|Q2UPK0|ERB1_ASPOR Ribosome biogenesis protein erb1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=erb1 PE=3 SV=1
Length = 783
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQQGV 72
APE ++ +PS E + +K + G I+P KPP +D E+ + WA
Sbjct: 246 APEPKRRFVPSKHEAKRVMKIVKAIREGRILPYKPPTEEEDKEQDVVNYDLWA----DET 301
Query: 73 EKPKGPLEALRPKLQPTQQQTRYRKSP-YAP 102
E+P P+ PKL P + Y P Y P
Sbjct: 302 ERPDHPMHIPAPKLPPPGYEESYHPPPEYLP 332
>sp|P79058|IGO1_SCHPO mRNA stability protein mug134 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mug134 PE=2 SV=4
Length = 139
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHE-RAYFDSADWALGK 68
EE L + YG + +K L+ K + R YFDS D+AL K
Sbjct: 33 EEQKLFRLYGRLPQRKDLLVQKLQQGRKYFDSGDYALNK 71
>sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2 (strain
Thailand/NGS-C/1944) PE=1 SV=2
Length = 3391
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSA 62
MPS E+ AL++KYGG + + P + HE + +A
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWLSNA 2715
>sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2 (strain 16681-PDK53) PE=1
SV=1
Length = 3391
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQQGVEKPKGPLEALRP 84
MPS E+ AL++KYGG + + P + HE + +A + +
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWVSNASGNIVSSVN----------MIS 2727
Query: 85 KLQPTQQQTRYRKSPYAP 102
++ + RY+K+ Y P
Sbjct: 2728 RMLINRFTMRYKKATYEP 2745
>sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2 (strain
Thailand/16681/1984) PE=1 SV=1
Length = 3391
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 25 MPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQQGVEKPKGPLEALRP 84
MPS E+ AL++KYGG + + P + HE + +A + +
Sbjct: 2678 MPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWVSNASGNIVSSVN----------MIS 2727
Query: 85 KLQPTQQQTRYRKSPYAP 102
++ + RY+K+ Y P
Sbjct: 2728 RMLINRFTMRYKKATYEP 2745
>sp|B8GPT9|GCP_THISH Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcp PE=3
SV=1
Length = 336
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 15 GNAPEESQKTMPS-SEEEEAALKKKYGGIVPKKPPLISKDHERAY-------FDSADWAL 66
G A ++++ + S + + AL +YGG+VP+ L S+DH R D AD A
Sbjct: 14 GVAVIDAERGLLSHALYSQVALHAEYGGVVPE---LASRDHIRKLLPLVRQALDGADTAA 70
Query: 67 GKQQGVEKPKGP 78
G+ GP
Sbjct: 71 SDLTGIAYTSGP 82
>sp|P53897|IGO1_YEAST mRNA stability protein IGO1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IGO1 PE=1 SV=1
Length = 168
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 31 EEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGK 68
E L K YG + KK +R YFDS D+AL K
Sbjct: 34 NEMKLYKMYGKLPSKKDIFKHTMQKRKYFDSGDYALQK 71
>sp|Q0CCP0|ERB1_ASPTN Ribosome biogenesis protein erb1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=erb1 PE=3 SV=1
Length = 784
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQQGV 72
APE ++ +PS E + +K K G I+P KPP +D ++ + WA
Sbjct: 248 APEPKRRFVPSKHEAKRVMKIVKAIKEGRILPYKPP-TEEDEDKDVINYDLWA----DEA 302
Query: 73 EKPKGPLEALRPKLQPTQQQTRYRKSP-YAP 102
E+P P+ PKL P + Y P Y P
Sbjct: 303 ERPDHPMHVPAPKLPPPGYEESYHPPPEYLP 333
>sp|A2QPZ4|ERB1_ASPNC Ribosome biogenesis protein erb1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=erb1 PE=3 SV=1
Length = 788
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 17 APEESQKTMPSSEEEEAALKK----KYGGIVPKKPPLISKDHERAYFDSADWALGKQQGV 72
APE ++ +PS E + +K + G I+P KPP K+ + + WA
Sbjct: 251 APEPKRRFVPSKHEAKRVMKIVKAIREGRILPYKPPSEEKEEDLELINYDLWA----DEA 306
Query: 73 EKPKGPLEALRPKLQPTQQQTRYRKSP-YAPAGGE 106
E+P P+ PKL P + Y P Y P E
Sbjct: 307 ERPDHPMHVPAPKLPPPGYEESYHPPPEYLPDNKE 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.125 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,156,303
Number of Sequences: 539616
Number of extensions: 2308786
Number of successful extensions: 5220
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 5162
Number of HSP's gapped (non-prelim): 145
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)