Query 033401
Match_columns 120
No_of_seqs 113 out of 160
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efv_A Hypothetical protein MJ 18.6 34 0.0012 23.9 0.7 15 27-41 59-73 (92)
2 2do3_A Transcription elongatio 16.3 26 0.0009 23.1 -0.3 14 56-69 15-28 (69)
3 1ksi_A Copper amine oxidase; P 13.0 39 0.0013 30.1 -0.2 14 56-69 291-304 (642)
4 1w6g_A Phenylethylamine oxidas 12.6 41 0.0014 30.1 -0.2 14 56-69 292-305 (646)
5 1spu_A Copper amine oxidase; o 12.1 43 0.0015 30.1 -0.2 14 56-69 379-392 (727)
6 4efa_E V-type proton ATPase su 11.7 11 0.00039 28.2 -3.5 29 32-60 204-233 (233)
7 2gfg_A BH2851; antiparallel ba 9.1 79 0.0027 22.8 0.3 15 56-70 38-52 (193)
8 3v85_A CYTH-like phosphatase; 8.4 92 0.0031 22.4 0.4 15 55-69 33-47 (210)
9 3tj7_A GBAA_1210 protein; stru 8.3 93 0.0032 23.0 0.4 14 56-69 38-51 (195)
10 1xpn_A Hypothetical protein PA 8.1 2E+02 0.007 21.5 2.3 33 41-73 12-44 (170)
No 1
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=18.58 E-value=34 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCC
Q 033401 27 SSEEEEAALKKKYGG 41 (120)
Q Consensus 27 s~~~eE~kl~~KYG~ 41 (120)
.++++|.+|..|||+
T Consensus 59 tLsdeEe~IieKyGK 73 (92)
T 2efv_A 59 TLTEEEEVIIQRLGK 73 (92)
T ss_dssp ECCHHHHHHHHHHGG
T ss_pred EecHHHHHHHHHHhH
Confidence 467899999999996
No 2
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=16.33 E-value=26 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=11.3
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
||||.-||+.--=.
T Consensus 15 rK~F~~GDHVkVi~ 28 (69)
T 2do3_A 15 RKYFKMGDHVKVIA 28 (69)
T ss_dssp CSSCCTTCEEEESS
T ss_pred eeeccCCCeEEEec
Confidence 89999999865444
No 3
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=12.96 E-value=39 Score=30.06 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=11.5
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|||-|+..
T Consensus 291 k~~fD~GeyG~G~~ 304 (642)
T 1ksi_A 291 KTFFDSGEFGFGLS 304 (642)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeeeccccCcccc
Confidence 46999999988765
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=12.57 E-value=41 Score=30.06 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=12.1
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|||-|+..
T Consensus 292 k~afD~GeyG~G~~ 305 (646)
T 1w6g_A 292 QNYFDTGEYLVGQY 305 (646)
T ss_dssp CEEECCCCCCGGGG
T ss_pred ceeeeccCcCCccc
Confidence 47999999988875
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=12.14 E-value=43 Score=30.12 Aligned_cols=14 Identities=43% Similarity=0.940 Sum_probs=11.6
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|||-|+..
T Consensus 379 k~~fD~GeyG~G~~ 392 (727)
T 1spu_A 379 KAYLDSGDYGMGTL 392 (727)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeeeccCcCCccc
Confidence 47999999988765
No 6
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=11.73 E-value=11 Score=28.18 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=9.8
Q ss_pred HHHHHHHhCCCCCC-CCccccccccccccc
Q 033401 32 EAALKKKYGGIVPK-KPPLISKDHERAYFD 60 (120)
Q Consensus 32 E~kl~~KYG~L~pK-k~~Li~K~~eRKYFD 60 (120)
|.+|...+-.+.|. ...|......|||||
T Consensus 204 e~RL~~~~~~~lp~Ir~~LFG~~~~r~f~d 233 (233)
T 4efa_E 204 EERLKLLSEEALPAIRLELYGPSKTRKFFD 233 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCCCCCCCC
Confidence 34444444443433 234555566799998
No 7
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=9.07 E-value=79 Score=22.81 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.1
Q ss_pred cccccchhhHhhhhc
Q 033401 56 RAYFDSADWALGKQQ 70 (120)
Q Consensus 56 RKYFDSgDyAL~Kq~ 70 (120)
--|||..|..|.+++
T Consensus 38 n~YfDTpd~~L~~~~ 52 (193)
T 2gfg_A 38 NHYFETDDFQLKKQS 52 (193)
T ss_dssp EEEEECTTCHHHHTT
T ss_pred EEeeeCCCHHHHhCC
Confidence 369999999999983
No 8
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=8.38 E-value=92 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=13.1
Q ss_pred ccccccchhhHhhhh
Q 033401 55 ERAYFDSADWALGKQ 69 (120)
Q Consensus 55 eRKYFDSgDyAL~Kq 69 (120)
.--|||..|+.|.++
T Consensus 33 ~~~y~dt~~~~l~~~ 47 (210)
T 3v85_A 33 RNTFFDTPKNDLSLR 47 (210)
T ss_dssp EEEEEECTTCHHHHT
T ss_pred EEEEEeCCCHHHHhC
Confidence 346999999999998
No 9
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=8.27 E-value=93 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.8
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
--|||..|+.|.++
T Consensus 38 n~YfDTpd~~L~~~ 51 (195)
T 3tj7_A 38 NHYFETPNSSLKEA 51 (195)
T ss_dssp EEEEECTTCHHHHT
T ss_pred EEEEeCCcHhHHhC
Confidence 46999999999998
No 10
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1
Probab=8.12 E-value=2e+02 Score=21.51 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=21.4
Q ss_pred CCCCCCCcccccccccccccchhhHhhhhcCCC
Q 033401 41 GIVPKKPPLISKDHERAYFDSADWALGKQQGVE 73 (120)
Q Consensus 41 ~L~pKk~~Li~K~~eRKYFDSgDyAL~Kq~g~~ 73 (120)
+|.|+.++.-.--..+.-||++||+-..+.|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~Fd~~e~a~~~~~G~~ 44 (170)
T 1xpn_A 12 GLVPRGSHMASNPNDLPDFPEHEYAATQQVGGG 44 (170)
T ss_dssp CSCSSCCSSSCCSCCCCSSCCGGGGTCCCCCCC
T ss_pred CcccCCCcccCCCCCCCCCCHHHHHHHhCCCCc
Confidence 355554433333334678999999988887754
Done!