Query 033401
Match_columns 120
No_of_seqs 113 out of 160
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 22:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d6za1 b.30.2.1 (A:301-724) C 22.8 7.7 0.00056 30.7 -0.2 14 56-69 79-92 (424)
2 d2efva1 a.43.1.12 (A:6-87) Unc 22.0 12 0.00089 24.1 0.7 16 26-41 53-68 (82)
3 d1oh0a_ d.17.4.3 (A:) Delta-5- 17.3 10 0.00076 22.6 -0.5 11 56-66 115-125 (125)
4 d2jmua1 d.63.1.2 (A:2-224) Thi 17.1 16 0.0012 25.1 0.5 14 56-69 36-49 (223)
5 d3dm8a1 d.17.4.20 (A:1-135) Un 16.4 18 0.0013 21.9 0.6 12 55-66 119-130 (135)
6 d1w2za1 b.30.2.1 (A:207-647) C 14.8 15 0.0011 29.0 -0.2 14 56-69 90-103 (441)
7 d2do3a1 b.34.5.5 (A:462-523) T 13.1 17 0.0012 22.0 -0.3 14 56-69 8-21 (62)
8 d1w6ga1 b.30.2.1 (A:212-628) C 12.8 19 0.0014 28.3 -0.2 14 56-69 83-96 (417)
9 d2csba4 a.60.2.4 (A:465-519) T 8.6 84 0.0061 18.3 1.8 13 29-41 14-26 (55)
10 d2oqea1 b.30.2.1 (A:237-672) C 7.9 34 0.0025 26.9 -0.4 14 56-69 79-92 (436)
No 1
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=22.81 E-value=7.7 Score=30.66 Aligned_cols=14 Identities=43% Similarity=0.940 Sum_probs=12.1
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|+|-|+..
T Consensus 79 ~~~~D~Ge~G~G~~ 92 (424)
T d1d6za1 79 KAYLDSGDYGMGTL 92 (424)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeEeccccCcCcc
Confidence 46999999988876
No 2
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=22.00 E-value=12 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHhCC
Q 033401 26 PSSEEEEAALKKKYGG 41 (120)
Q Consensus 26 ~s~~~eE~kl~~KYG~ 41 (120)
-.++.+|+++..|||+
T Consensus 53 ltLs~~Ee~IIeKyGK 68 (82)
T d2efva1 53 ITLTEEEEVIIQRLGK 68 (82)
T ss_dssp EECCHHHHHHHHHHGG
T ss_pred eEecHHHHHHHHHHHH
Confidence 3567899999999996
No 3
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=17.27 E-value=10 Score=22.59 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.6
Q ss_pred cccccchhhHh
Q 033401 56 RAYFDSADWAL 66 (120)
Q Consensus 56 RKYFDSgDyAL 66 (120)
|.|||++|.+|
T Consensus 115 ~~y~d~~~~~~ 125 (125)
T d1oh0a_ 115 QAYWSEVNLSV 125 (125)
T ss_dssp EEECCGGGEEC
T ss_pred EEEECHHHCcC
Confidence 78999988653
No 4
>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.07 E-value=16 Score=25.08 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=12.7
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
--|||..|+.|.++
T Consensus 36 d~YfDtpd~~L~~~ 49 (223)
T d2jmua1 36 DTYYDTSELSLMLS 49 (223)
T ss_dssp EEEEECTTSHHHHT
T ss_pred EEEEcCCChhHHhC
Confidence 46999999999988
No 5
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.40 E-value=18 Score=21.92 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=9.5
Q ss_pred ccccccchhhHh
Q 033401 55 ERAYFDSADWAL 66 (120)
Q Consensus 55 eRKYFDSgDyAL 66 (120)
-|-|||+.|++.
T Consensus 119 ~~~y~D~~~~~~ 130 (135)
T d3dm8a1 119 LRMVLDTFDLVE 130 (135)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHH
Confidence 378999999843
No 6
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=14.78 E-value=15 Score=29.02 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=12.2
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|+|-|+..
T Consensus 90 k~~~D~g~yG~G~~ 103 (441)
T d1w2za1 90 KTFFDSGEFGFGLS 103 (441)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeEcccCcccccc
Confidence 47999999988876
No 7
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=17 Score=22.05 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=11.5
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
||||.-||++---.
T Consensus 8 rK~F~~GDhVkVi~ 21 (62)
T d2do3a1 8 RKYFKMGDHVKVIA 21 (62)
T ss_dssp CSSCCTTCEEEESS
T ss_pred eeccCCCCeEEEec
Confidence 89999999876555
No 8
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=12.81 E-value=19 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=12.4
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||+|+|-|+..
T Consensus 83 ~~~~D~ge~G~G~~ 96 (417)
T d1w6ga1 83 QNYFDTGEYLVGQY 96 (417)
T ss_dssp CEEECCCCCCGGGG
T ss_pred ceeEeccccchhhh
Confidence 46999999999887
No 9
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.62 E-value=84 Score=18.31 Aligned_cols=13 Identities=54% Similarity=0.848 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhCC
Q 033401 29 EEEEAALKKKYGG 41 (120)
Q Consensus 29 ~~eE~kl~~KYG~ 41 (120)
.+.-++|.+|||+
T Consensus 14 reraerllkkygg 26 (55)
T d2csba4 14 RERAERLLKKYGG 26 (55)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcC
Confidence 3455678899997
No 10
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=7.93 E-value=34 Score=26.94 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=12.0
Q ss_pred cccccchhhHhhhh
Q 033401 56 RAYFDSADWALGKQ 69 (120)
Q Consensus 56 RKYFDSgDyAL~Kq 69 (120)
+.|||.|+|-|+..
T Consensus 79 ~~~~D~geyG~G~~ 92 (436)
T d2oqea1 79 KHALDIGEYGAGYM 92 (436)
T ss_dssp CEECHHHHTCTTTT
T ss_pred ceEEeccCccCCcc
Confidence 47999999988876
Done!