Query 033404
Match_columns 120
No_of_seqs 110 out of 1014
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.7 1.5E-18 3.3E-23 113.7 0.3 69 44-114 25-96 (96)
2 cd04660 nsLTP_like nsLTP_like: 99.7 5.1E-17 1.1E-21 102.8 5.5 69 40-114 3-73 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.6 3.1E-16 6.7E-21 96.0 3.7 62 45-106 1-63 (63)
4 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 6E-16 1.3E-20 101.0 4.7 75 40-115 5-89 (89)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.6 3E-15 6.6E-20 93.2 4.8 63 42-110 3-65 (66)
6 smart00499 AAI Plant lipid tra 99.3 7.4E-12 1.6E-16 78.0 5.1 72 40-114 3-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.9 3.5E-11 7.6E-16 78.0 -3.6 68 43-114 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 97.3 8.7E-05 1.9E-09 48.3 0.9 74 42-115 6-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 96.9 0.001 2.2E-08 43.2 3.3 70 42-114 8-85 (85)
10 PF07172 GRP: Glycine rich pro 81.9 1.8 4E-05 28.5 3.0 19 1-19 1-19 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 80.4 0.94 2E-05 29.9 1.2 63 43-108 13-104 (110)
12 KOG4063 Major epididymal secre 43.6 24 0.00052 25.4 2.5 32 1-35 1-32 (158)
13 PF05617 Prolamin_like: Prolam 32.1 56 0.0012 19.4 2.6 21 57-80 26-46 (70)
14 PF10913 DUF2706: Protein of u 24.3 99 0.0021 18.3 2.5 15 2-16 1-15 (60)
15 PLN00214 putative protein; Pro 22.8 52 0.0011 22.5 1.3 22 58-82 60-81 (115)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.70 E-value=1.5e-18 Score=113.68 Aligned_cols=69 Identities=39% Similarity=0.815 Sum_probs=47.1
Q ss_pred chhcc---HHHhhCCCCCCChhhHHHHHhhhccCCcccceeccccchhhcCCCHHHHhhchhccCCCCCCCCCC
Q 033404 44 SLTPC---LGAARNGRAKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQAGIKPAIAISIPKRCNLRRPVGKKC 114 (120)
Q Consensus 44 ~l~pC---~~yv~~~~~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~~~in~~~a~~LP~~Cg~~~p~~~~C 114 (120)
.|.+| ..|++++ ..||+.||+++|++.+.+..|||+++++.....++||.+|+.+||++||++.|+ ++|
T Consensus 25 ~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 25 SLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-SKC 96 (96)
T ss_dssp CCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S-----
T ss_pred HHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-CCC
Confidence 46666 7888854 589999999999988889999999987765455689999999999999999887 777
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.69 E-value=5.1e-17 Score=102.78 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=57.2
Q ss_pred hhhhchhccHHHhhCCC--CCCChhhHHHHHhhhccCCcccceeccccchhhcCCCHHHHhhchhccCCCCCCCCCC
Q 033404 40 SAAASLTPCLGAARNGR--AKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQAGIKPAIAISIPKRCNLRRPVGKKC 114 (120)
Q Consensus 40 ~~~~~l~pC~~yv~~~~--~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~~~in~~~a~~LP~~Cg~~~p~~~~C 114 (120)
..+..|+||++|+++++ .+||..||++||++ +..|+|.++...... .||.++|.+||++||+++|+ ++|
T Consensus 3 ~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~~~--~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 3 MDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSLVLQ--IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCCccc--ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 34588999999999876 36899999999984 566999887543222 59999999999999999988 887
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.62 E-value=3.1e-16 Score=95.97 Aligned_cols=62 Identities=39% Similarity=0.882 Sum_probs=53.8
Q ss_pred hhccHHHhhCCCCCCChhhHHHHHhhhccCCcccceeccccchhhcCC-CHHHHhhchhccCC
Q 033404 45 LTPCLGAARNGRAKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQAGI-KPAIAISIPKRCNL 106 (120)
Q Consensus 45 l~pC~~yv~~~~~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~~~i-n~~~a~~LP~~Cg~ 106 (120)
|.||++|+++++.+||+.||++++++.+.+..|+|+++.......+++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999876789999999999998888999999987655444455 79999999999996
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.61 E-value=6e-16 Score=101.00 Aligned_cols=75 Identities=29% Similarity=0.666 Sum_probs=58.6
Q ss_pred hhhhchhccHHHhhCCCCCCChhhHHHHHhhhcc-----CCcccceeccccchhhc-CCCHHHHhhchhccCCCCC----
Q 033404 40 SAAASLTPCLGAARNGRAKPPPICCSKLGALIRT-----APRCLCAVLLSPLAKQA-GIKPAIAISIPKRCNLRRP---- 109 (120)
Q Consensus 40 ~~~~~l~pC~~yv~~~~~~Ps~~CC~~vk~l~~~-----~~~ClC~~i~~~~~~~~-~in~~~a~~LP~~Cg~~~p---- 109 (120)
++...|.||++|+++++..|++.||++++++++. +..|+|..+ ++....+ +||.+|+.+||++||++.|
T Consensus 5 ~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~-~~~~~~~~~i~~~~a~~LP~~C~v~~~~~i~ 83 (89)
T cd01960 5 QVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCL-KSAAAGISGLNPGRAAGLPGKCGVSIPYPIS 83 (89)
T ss_pred HHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcc-cccccccCCCCHHHHHhChHhcccCCCCCCC
Confidence 7889999999999987778999999999998754 334555554 4444555 5999999999999999843
Q ss_pred CCCCCC
Q 033404 110 VGKKCE 115 (120)
Q Consensus 110 ~~~~C~ 115 (120)
+..+|+
T Consensus 84 ~~~dC~ 89 (89)
T cd01960 84 PSTDCS 89 (89)
T ss_pred CCCCCC
Confidence 255663
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.57 E-value=3e-15 Score=93.19 Aligned_cols=63 Identities=32% Similarity=0.643 Sum_probs=53.7
Q ss_pred hhchhccHHHhhCCCCCCChhhHHHHHhhhccCCcccceeccccchhhcCCCHHHHhhchhccCCCCCC
Q 033404 42 AASLTPCLGAARNGRAKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQAGIKPAIAISIPKRCNLRRPV 110 (120)
Q Consensus 42 ~~~l~pC~~yv~~~~~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~~~in~~~a~~LP~~Cg~~~p~ 110 (120)
...|.+|++|++++ .+||++||+.+|+ +..|||+|+..+..+.| ||.++|++||++||+++|.
T Consensus 3 ~~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~p~l~~~-i~~~~A~~l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKNPSLKQY-VNSPNARKVLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecCccHHhh-cCcHHHHHHHHHcCCCCCC
Confidence 45799999999976 4899999999997 55999999866555555 9999999999999999874
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.27 E-value=7.4e-12 Score=77.96 Aligned_cols=72 Identities=29% Similarity=0.623 Sum_probs=56.6
Q ss_pred hhhhchhccHHHhhCC--CCCCChhhHHHHHhhhccCCcccceeccccchhhcC---CCHHHHhhchhccCCCCCCCCCC
Q 033404 40 SAAASLTPCLGAARNG--RAKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQAG---IKPAIAISIPKRCNLRRPVGKKC 114 (120)
Q Consensus 40 ~~~~~l~pC~~yv~~~--~~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~~~---in~~~a~~LP~~Cg~~~p~~~~C 114 (120)
+.+..+.+|.+|+++. ...|+..||++++.+. +..|+|.++.......+. ++.+++.+||+.||++.|. +.|
T Consensus 3 ~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~~C 79 (79)
T smart00499 3 QVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-TDC 79 (79)
T ss_pred hhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-CCC
Confidence 5666788999999876 3588899999999975 788999887554333222 6999999999999999664 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.91 E-value=3.5e-11 Score=78.00 Aligned_cols=68 Identities=29% Similarity=0.692 Sum_probs=53.9
Q ss_pred hchhccHHHhhCCCCCCChhhHHHHHhhhccCCcccceeccccchhh----------cCCCHHHHhhchhccCCCCCCCC
Q 033404 43 ASLTPCLGAARNGRAKPPPICCSKLGALIRTAPRCLCAVLLSPLAKQ----------AGIKPAIAISIPKRCNLRRPVGK 112 (120)
Q Consensus 43 ~~l~pC~~yv~~~~~~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~~----------~~in~~~a~~LP~~Cg~~~p~~~ 112 (120)
..+.+|.+|++++...|+..||++|+++ +..|+|..+....... .+++..+|.+||+.||++.|. +
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~-~ 88 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY-T 88 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-S
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-C
Confidence 4599999999987667999999999997 7899998874432221 258999999999999999664 4
Q ss_pred CC
Q 033404 113 KC 114 (120)
Q Consensus 113 ~C 114 (120)
+|
T Consensus 89 ~C 90 (90)
T PF00234_consen 89 DC 90 (90)
T ss_dssp -G
T ss_pred CC
Confidence 44
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=97.30 E-value=8.7e-05 Score=48.28 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=49.4
Q ss_pred hhchhccHHHhhC----CCCCCChhhHHHHHhhhccC-CcccceeccccchhhcCCCHH-HHhhchhccCCCCCCCCCCC
Q 033404 42 AASLTPCLGAARN----GRAKPPPICCSKLGALIRTA-PRCLCAVLLSPLAKQAGIKPA-IAISIPKRCNLRRPVGKKCE 115 (120)
Q Consensus 42 ~~~l~pC~~yv~~----~~~~Ps~~CC~~vk~l~~~~-~~ClC~~i~~~~~~~~~in~~-~a~~LP~~Cg~~~p~~~~C~ 115 (120)
..+|.-|...+.. .+.++.+.||+-++.+.+.+ ..|||..+..+....+++|.. ....|-..||.+.|.+++|.
T Consensus 6 ~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~gf~C~ 85 (85)
T PF14547_consen 6 ALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPSGFTCP 85 (85)
T ss_pred chhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcCCCcCC
Confidence 3477788887711 12357889999999998775 469997763332111233333 34457788999999999994
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=96.94 E-value=0.001 Score=43.23 Aligned_cols=70 Identities=24% Similarity=0.498 Sum_probs=47.5
Q ss_pred hhchhccHHHhhCC----CCCCChhhHHHHHhhhccC-CcccceeccccchhhcCC--CHHHHh-hchhccCCCCCCCCC
Q 033404 42 AASLTPCLGAARNG----RAKPPPICCSKLGALIRTA-PRCLCAVLLSPLAKQAGI--KPAIAI-SIPKRCNLRRPVGKK 113 (120)
Q Consensus 42 ~~~l~pC~~yv~~~----~~~Ps~~CC~~vk~l~~~~-~~ClC~~i~~~~~~~~~i--n~~~a~-~LP~~Cg~~~p~~~~ 113 (120)
..+|--|..-+..- +.+|.+.||+-++.+.+.+ ..|||..+..+ .+|| |..-.. -|-..||...|.+++
T Consensus 8 alkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan---~lgi~~~~pv~l~llln~CGk~~P~gf~ 84 (85)
T cd01958 8 ALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN---ILGISINIPVALSLLLNSCGRNVPPGFT 84 (85)
T ss_pred hHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc---ccCcccccChhHHHHHHHHcCcCCCCCc
Confidence 34677777766321 2367789999999998875 56999776332 2343 333333 455789999999998
Q ss_pred C
Q 033404 114 C 114 (120)
Q Consensus 114 C 114 (120)
|
T Consensus 85 C 85 (85)
T cd01958 85 C 85 (85)
T ss_pred C
Confidence 8
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.90 E-value=1.8 Score=28.51 Aligned_cols=19 Identities=21% Similarity=0.238 Sum_probs=7.8
Q ss_pred CccchhHHHHHHHHHHHHH
Q 033404 1 MVNSSMKTCFVALFVFLLV 19 (120)
Q Consensus 1 ~~~~~m~~~~~~~~~~~~~ 19 (120)
|.++...++.++++++||+
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5544433333333334444
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=80.37 E-value=0.94 Score=29.91 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=41.3
Q ss_pred hchhccHHHhhCCC---C-----------CCChhhHHHHHhhhccCCcccceeccccchh---h-------c-----CCC
Q 033404 43 ASLTPCLGAARNGR---A-----------KPPPICCSKLGALIRTAPRCLCAVLLSPLAK---Q-------A-----GIK 93 (120)
Q Consensus 43 ~~l~pC~~yv~~~~---~-----------~Ps~~CC~~vk~l~~~~~~ClC~~i~~~~~~---~-------~-----~in 93 (120)
..|.+|..|+.-.. . .....||..++.+ ...|.|..+..-... . + ...
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 46889999985321 1 1125699999985 678999887421110 0 0 133
Q ss_pred HHHHhhchhccCCCC
Q 033404 94 PAIAISIPKRCNLRR 108 (120)
Q Consensus 94 ~~~a~~LP~~Cg~~~ 108 (120)
...|.+||..||+..
T Consensus 90 ~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 90 RQAAQNLPSMCNLYP 104 (110)
T ss_pred HHHHHhhchhcCCCC
Confidence 467889999999984
No 12
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=43.56 E-value=24 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=16.8
Q ss_pred CccchhHHHHHHHHHHHHHHhhhhhhhcccCCCCC
Q 033404 1 MVNSSMKTCFVALFVFLLVSETLIEETDAAGECGR 35 (120)
Q Consensus 1 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 35 (120)
||.+.++++.+.+++-+.+ ..+.+-.-.+|++
T Consensus 1 m~ms~~~~v~l~alls~a~---aq~~~t~~k~C~s 32 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAA---AQAISTGVKQCGS 32 (158)
T ss_pred CchHHHHHHHHHHHHHHhh---hcccCcccccccC
Confidence 6777777666655444444 1122223456774
No 13
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=32.07 E-value=56 Score=19.45 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=16.4
Q ss_pred CCCChhhHHHHHhhhccCCcccce
Q 033404 57 AKPPPICCSKLGALIRTAPRCLCA 80 (120)
Q Consensus 57 ~~Ps~~CC~~vk~l~~~~~~ClC~ 80 (120)
...+..||.++..+ ...|.=.
T Consensus 26 ~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHH---hHhHHHH
Confidence 47899999999985 5667654
No 14
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=24.31 E-value=99 Score=18.32 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=6.9
Q ss_pred ccchhHHHHHHHHHH
Q 033404 2 VNSSMKTCFVALFVF 16 (120)
Q Consensus 2 ~~~~m~~~~~~~~~~ 16 (120)
|.+..|+..+.+++.
T Consensus 1 mlk~lkf~lv~imla 15 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLA 15 (60)
T ss_pred ChhHHHHHHHHHHHH
Confidence 344555554444333
No 15
>PLN00214 putative protein; Provisional
Probab=22.80 E-value=52 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=15.9
Q ss_pred CCChhhHHHHHhhhccCCcccceec
Q 033404 58 KPPPICCSKLGALIRTAPRCLCAVL 82 (120)
Q Consensus 58 ~Ps~~CC~~vk~l~~~~~~ClC~~i 82 (120)
++|..||+.+-. ....|.=.++
T Consensus 60 t~s~~CC~~LVk---~GK~CH~~Li 81 (115)
T PLN00214 60 TLIDPCCNDLVK---EGKVCHDTLI 81 (115)
T ss_pred CCchHHHHHHHH---HhhHHHHHHH
Confidence 689999998876 3566765443
Done!