BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033405
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 183 bits (465), Expect = 2e-47, Method: Composition-based stats.
Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISK + C LC
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI----CSLLC 113
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 181 bits (459), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 94/115 (81%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL+DLQ+DPP CSAGPV +D+FHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 6 MALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SK + C LC
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI----CSLLC 116
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 11 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 121
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 93/111 (83%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL+DL +DPP CSAGPV +D+FHWQATIMGPP+SPY GGVF ++IHFP DY
Sbjct: 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 114
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +++HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SK + + C
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC 117
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 11 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 121
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 6 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 66 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 116
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +++HFP DY
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SK + + C
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC 113
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 113
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 111
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 179 bits (453), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 113
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 179 bits (453), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 93/115 (80%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGPPDS Y GGVF +++HFP DY
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SK + C LC
Sbjct: 79 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI----CSLLC 129
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 179 bits (453), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 93/109 (85%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI +EL DL KDPP+S SAGPV +D+FHWQATIMGP DSPYAGGVF +SIHFP DY
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
PFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISK +S +
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSL 109
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 178 bits (452), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 129
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 178 bits (452), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 93/102 (91%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
+SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP DSPYAGGVF +SIHFP DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAF 103
FKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SK
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVL 104
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 178 bits (451), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 92/108 (85%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A KRI KEL DL KDPPT+CSAGPV +DMFHWQATIMGP DSPY+GGVF ++IHFP DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
FKPPKV F TK++HPNINS G+ICLDILK+QWSPALTISK +S +
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSL 129
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 178 bits (451), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 69 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 119
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 90/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QW PALTISK + + C
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLC 113
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 90/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLD L+ QWSPALTISK + + C
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLC 113
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 90/111 (81%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQAT MGP DSPY GGVF ++IHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 113
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 90/110 (81%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
FKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 113
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 90/110 (81%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
FKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISK + + C
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC 110
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISK + C LC
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI----CSLLC 114
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISK + C LC
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI----CSLLC 111
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 175 bits (443), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPKVAF T+++HPNINSNGSI LDIL+ QWSPALTISK + C LC
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSI----CSLLC 129
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 90/114 (78%), Gaps = 4/114 (3%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
ASKRI KEL DL +DPP CSAGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
FKPPKVAF T+++HPNINSNGSI LDIL+ QWSPAL ISK + C LC
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSI----CSLLC 110
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DLQ+DPP C AGPV +D+FHWQATIMGPPDS Y GGVF +++HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115
PFKPPK+AF TK++HPNINSNGSI LDIL+ QWSPALT+SK + C LC
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSI----CSLLC 117
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 171 bits (433), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 88/111 (79%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA KRI KEL DL +DPP C AGPV +DMFHWQATIMGP DSPY GGVF ++IHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
PFKPPKVAF T+++HP INSNGSI LDIL+ QWSPALTISK + + C
Sbjct: 61 PFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLC 111
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 88/109 (80%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
MA +RI KEL+++Q+DPP +CSAGPV +D+FHW ATI GP DSPY GG+F + +HFP DY
Sbjct: 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
PFK P+V F TKV+HPNIN NG ICLDILK+QWSPALT+S+ +S +
Sbjct: 64 PFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSL 112
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 80/102 (78%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
++KRI KEL D+ DPP +CSAGP ++++ W++TI+GPP S Y GGVF + I F P+YP
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYP 108
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAF 103
FKPPKV FRT+++H NINS G ICLDILK+ WSPALTISK
Sbjct: 109 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVL 150
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 80/102 (78%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
++KRI KEL ++ DPP +CSAGP ++++ W++TI+GPP S Y GGVF + I F PDYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAF 103
FKPPKV FRT+++H NINS G ICLDILK+ WSPALTISK
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVL 105
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 71/110 (64%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A KR++++ K LQ+DPP S P ++ W A I GP D+P+ GG F +S+ F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111
KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ T + + C
Sbjct: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLC 114
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 71/108 (65%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +S+ F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP ++ T + +
Sbjct: 65 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSL 112
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GPP +PY GG F+V I P +YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 62 FKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKAF 103
FKPPK+ F TKV+HPNI+S G+ICLDIL+ WSP +T+ A
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSAL 106
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 71/108 (65%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +S+ F +YP
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 67
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP ++ T + +
Sbjct: 68 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSL 115
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GPP +PY GG F+V I P +YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 62 FKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKAF 103
FKPPK+ F TKV+HPNI+S G+ICLDILK WSP +T+ A
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL 105
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A +R++++ K LQ+DPP S P ++ W A I GP +P+ G F + I F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
KPP V F +K+FHPN+ ++GSICLDIL+ +WSP +S T + +
Sbjct: 65 NKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSL 112
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 70/108 (64%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A +R++++ K +++D P SA P+ +++ W A I+GP D+PY G F + + F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEV 109
KPP V F +++FHPN+ +NG ICLDIL+ +W+P ++ T + +
Sbjct: 65 NKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSL 112
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
DYP + PKV F TK++HPNI+ G ICLD+LK WSPAL I
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 101
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKP 64
R+ KELKD++ + A + F W I GP +PY GG F ++I P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 65 PKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKAF 103
PK+ F TK++HPNI+S G+ICLD+LK +WSPALTI A
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTAL 126
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 63/100 (63%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAF 103
PPKV F TK++HPNI+ G ICLDILK++WSPAL I
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 103
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 100
PPKV F TK++HPNI+ G ICLDILK++WSPAL I
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIR 100
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPNI+ G ICLD+LK WSPAL I
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 103
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 14/113 (12%)
Query: 5 RILKELKDLQK-------DPPTS------CSAGPVAEDMFHWQATIMGPPDSPYAGGVFL 51
R+LKEL D+Q+ +P + SA V D+ W+ I GP +PY GG F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 52 VSIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKAF 103
+ I PPDYP+ PPK+ F TK++HPNI+S G+ICLDILK +WSPALTI A
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A KR+LKEL+ L KD P AGP +E+ +F W I GPPD+PYA GVF + FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKAFTIV 106
P PPK+ F + HPNI NG +C+ IL +E+WSP ++ K V
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 123
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
DYP + PKV F TK++HPNI+ G I LD+LK WSPAL I
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQI 101
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
DYP + PKV F TK++HP I+ G I LD+LK WSPAL I
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQI 101
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 99
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 108
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 99
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 107
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 99
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 123
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 99
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 159
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFP 57
+A +RI +E K++ K TS V E+ + I GPPD+PY GG + + I P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 58 PDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 99
YPF PPKV F TK++HPNI+S G+ICLDILK+QW+ A+T+
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 110
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPN++ G ICLDILK++WSPAL I
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 101
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPN++ G ICLDILK++WSPAL I
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPN++ G ICLDILK++WSPAL I
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 104
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPN++ G ICLDILK++WSPAL I
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 99
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
PKV F TK++HPN++ G ICLDILK++WSPAL I
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 106
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
+ + KE+ L DPP P ED+ Q TI GP +PYAGG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIV 106
PPK F TK+FHPN+ +NG IC+++LK W+ L I +
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTI 118
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 6 ILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKP 64
+ ++L +L K+P SAG + + D++ W+ I+GPPD+ Y GGVF + FP DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 65 PKVAFRTKVFHPNINSNGSICLDILKE 91
PK+ F T+++HPN++ NG +C+ IL E
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHE 108
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 62/97 (63%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF 62
SKR+ +EL+ L +A P +++F W AT+ GP D+ Y + +++ FP DYP+
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 63 KPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 99
KPP V F T +HPN++ +G+ICLDILKE W+ + +
Sbjct: 71 KPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDV 107
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKAFTIV 106
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K V
Sbjct: 67 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 125
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKAFTIV 106
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K V
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKAFTIV 106
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K V
Sbjct: 68 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 126
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKAFTIV 106
P PPK+ F ++FHPNI +G +C+ IL E+WSP ++ K V
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 128
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 59
Query: 60 YPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSP 95
YPFKPP + F TK++HPN++ NG ICL I+ E W P
Sbjct: 60 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 96
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPA 96
PFKPPK+ F+TK++HPNI+ G +CL ++ E W PA
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 100
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 62
Query: 60 YPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSP 95
YPFKPP + F TK++HPN++ NG ICL I+ E W P
Sbjct: 63 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 99
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPA 96
PFKPPK+ F+TK++HPNI+ G +CL ++ E W PA
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 14/107 (13%)
Query: 8 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPK 66
K+L D+++ P SAG V + D++ W+ ++GPPD+ Y GG F + FP DYP KPPK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 67 VAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTIS 100
+ F ++++HPNI+ G++C+ IL +E+W P T+
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVE 116
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GPP++ Y GG F + FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTI 99
P+ PP F TK++HPNI G +C+ IL E+W+P +
Sbjct: 68 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV 119
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GPP++ Y GG F + FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTI 99
P+ PP F TK++HPNI G +C+ IL E+W+P +
Sbjct: 65 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV 116
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF 62
+ R+ +EL L +PP + + M +A I+G ++PY GVF + + P YPF
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 63 KPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKAFTIVS 107
+PP++ F T ++HPNI+S G ICLD+L K W P+L I+ T +
Sbjct: 66 EPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQ 114
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +++ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
+YP KPPKV F +HPN+ +G+ICL IL E W PA+T+ + V ++
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +++ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 59 DYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
+YP KPPKV F +HPN+ +G+ICL IL E W PA+T+ + V ++
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 119
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+ R+ +E K ++D P A P D+ +W+ I G P + + GG++ +++
Sbjct: 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 69
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKAFTIVSEV 109
FP +YP +PPK F +FHPN+ +G++CL IL E+ W PA+TI + + ++
Sbjct: 70 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDL 125
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
KR+ +EL L SA P ++++F W TI G + Y + +S+ FP YP+
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQWS 94
P V F T +HPN+++ G+I LDILKE+WS
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWS 123
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 5 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 64
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 65 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 9 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 68
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 69 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++CL IL+E W PA+TI + + E+
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 119
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 1 MAS--KRILKELKDLQKDPP--TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHF 56
MAS KR+ KEL LQ DPP + + V + W + G P + Y G F + F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 57 PPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTI-SKAFTIVS 107
YPF P+V F + HP++ SNG ICL IL E WSPAL++ S +I+S
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIIS 133
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHP + +G++CL IL+E W PA+TI + + E+
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A+ RI KEL + K+PP +C+ ++ W +G ++ YA V+ + I FP +YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 62 FKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPALTIS 100
KPP V F K H ++ SNG ICL +L + ++P+L+IS
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSIS 120
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++ L IL+E W PA+TI + + E+
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQEL 119
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKAFTIVSEV 109
F DYP PPK F +FHPN+ +G++ L IL+E W PA+TI + + E+
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQEL 119
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A+ RI KEL + +PP +C+ ++ W +G ++ YA V+ + I FP DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 62 FKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPALTIS 100
KPP V F K H ++ SNG ICL +L + ++P+L+IS
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSIS 106
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKV 67
++ DL+++ +A PV+EDM W+ I G +S + G VF ++IHF +Y + PP V
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 68 AFRTKVFHPNIN-SNGSICLDILK--EQWSPALTIS 100
F T FHPN++ G C+D L E+W+ T+S
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLS 125
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 SIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPA 96
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPV 116
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 SIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPA 96
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GP D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 SIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPA 96
I P YP PPK++F + + H N+ S G ICL+ILK E+W+P
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 39 GPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPAL 97
GP +PY GGV+ V + P YPFK P + F K+FHPNI+ ++G++CLD++ + W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 98 TISKAF 103
++ F
Sbjct: 119 DLTNIF 124
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 30 MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDI 88
MFH GP + Y GG++ V + P DYPF P + F K+ HPN++ ++GS+CLD+
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 89 LKEQWSPALTISKAFTI 105
+ + W+P ++ F +
Sbjct: 88 INQTWTPLYSLVNVFEV 104
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ S Y
Sbjct: 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 63
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFL 114
P PPKV T V+HPNI+ G++CL+IL+E W P LTI+ +I+ + +FL
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTIN---SIIYGLQYLFL 114
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 39 GPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPAL 97
GP +PY G +++ + P DYPFK P + F ++ HPN++ +GS+CLD++ + W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 98 TISKAFTI 105
+ F +
Sbjct: 106 QLENIFDV 113
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 36 TIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP 95
I+ P + Y G ++ F YP +PPKV K+FHPNI+ G++CL+IL+E WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 96 ALTISKAFTIVSEVGCIFLCLK 117
AL + T G +FL L+
Sbjct: 128 ALDLQSIIT-----GLLFLFLE 144
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ S Y
Sbjct: 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 83
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFL 114
P PPKV T V+HPNI+ G++ L+IL+E W P LTI+ +I+ + +FL
Sbjct: 84 PHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTIN---SIIYGLQYLFL 134
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTI 99
PPKV TK++HPNI G ICL +L+E W+P T+
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 118
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTI 99
PPKV TK++HPNI G ICL +L+E W+P T+
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTL 118
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61
A++R+ ++ ++KDP A P+ ++ W + GP +PY GG + + FP ++P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 62 FKPPKVAFRTKVFHPN--INSNGSICLDILK---EQWSPALTISKAFT 104
FKPP + T PN N +CL I + W+PA ++S T
Sbjct: 75 FKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT 118
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 1 MASKRILKELK------DLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPY--A 46
+++KRI+K+LK D + +S S A + +++W + P DS Y A
Sbjct: 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGA 67
Query: 47 GGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKAFTIV 106
G + +S+ F DYP +PP V F T V+ P + G IC ++ + W+P S +V
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLV 127
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 37 IMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-- 89
I GP D+PYA G F ++FP DYP PP V T F+PN+ ++G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 90 -----KEQWSPALT 98
+E+W+P +
Sbjct: 176 WHGRPEEKWNPQTS 189
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GPP S + ++ +SI P+Y
Sbjct: 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 61 PFKPPKVAFRTKVFHPNIN-SNGSICLDILK-EQWSPALTIS 100
P PPKV F +K+ P +N + G + D W A T+
Sbjct: 70 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTME 111
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GPP S + ++ +SI P+Y
Sbjct: 9 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 61 PFKPPKVAFRTKVFHPNIN-SNGSICLDILK-EQWSPALTIS 100
P PPKV F +K+ P +N + G + D W A T+
Sbjct: 69 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTME 110
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ +NS+ +
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ IN++ +
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ +NS+ +
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ IN++ +
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ IN++ +
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + + P Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC 85
P PP V F TK+ IN++ +
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L+EL++ QK + + +D + W I+GPP + Y ++ + I P Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 61 PFKPPKVAFRTKVFHPNINSNGSI 84
P PP V F TK+ +NS+ +
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGV 122
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 5 RILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L EL+ QK + S G + D + +W TI G P + + ++ ++I +Y
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC---LDILKEQWSPALTI 99
P PP V F TK+ +++ G + L ILK W+ TI
Sbjct: 89 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTI 129
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 5 RILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60
R+L EL+ QK + S G + D + +W TI G P + + ++ ++I +Y
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 61 PFKPPKVAFRTKVFHPNINSNGSIC---LDILKEQWSPALTI 99
P PP V F TK+ +++ G + L ILK W+ TI
Sbjct: 85 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTI 125
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 2 ASKRILKELKDLQKDPPTSC---SAGPVAEDMFHWQATIMG-PPDSPYAGGV-------- 49
AS R++KEL+D+ + S + + ++ W + PDSP +
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 50 ---FLVSIHFPPDYPFKPPKVAFRTKVFHPN-INSNGSICLDILKEQ-WSPALTI 99
L++ F ++PF PP V V + G++C+++L +Q WS A +I
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 142
>pdb|3CP3|A Chain A, Crystal Structure Of Conserved Protein Of Unknown
Function Dip1874 From Corynebacterium Diphtheriae
Length = 148
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 54 IHFPPDYPFKPPKVAFR----TKVFHPNINSNGSICLDILK--EQWSPAL 97
++F DY + P+V FR TK+F N+NS+ +D E WS L
Sbjct: 45 VNFVLDYSAEQPRVYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVL 94
>pdb|2J0N|A Chain A, A Proteolytically Truncated Form Of Shigella Flexneri Ipad
pdb|2J0N|B Chain B, A Proteolytically Truncated Form Of Shigella Flexneri Ipad
Length = 200
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVSIHFPP-DY 60
K+ L+ELK+ KD P + V+++ + T +G + G ++VSI+ P D
Sbjct: 64 KKALEELKEKYKDKPLYPANNTVSQEQANKWLTELGGTIGKVSQKNGGYVVSINMTPIDN 123
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALT 98
K N+ NG + LD K Q W+ +
Sbjct: 124 MLKSL----------DNLGGNGEVVLDNAKYQAWNAGFS 152
>pdb|2JAA|A Chain A, Semet Substituted Shigella Flexneri Ipad
pdb|2JAA|B Chain B, Semet Substituted Shigella Flexneri Ipad
Length = 212
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVSIHFPP-DY 60
K+ L+ELK+ KD P + V+++ + T +G + G ++VSI+ P D
Sbjct: 76 KKALEELKEKYKDKPLYPANNTVSQEQANKWLTELGGTIGKVSQKNGGYVVSINXTPIDN 135
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALT 98
K N+ NG + LD K Q W+ +
Sbjct: 136 XLKSL----------DNLGGNGEVVLDNAKYQAWNAGFS 164
>pdb|3R9V|A Chain A, Cocrystal Structure Of Proteolytically Truncated Form Of
Ipad From Shigella Flexneri Bound To Deoxycholate
pdb|3R9V|B Chain B, Cocrystal Structure Of Proteolytically Truncated Form Of
Ipad From Shigella Flexneri Bound To Deoxycholate
Length = 286
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVSIHFPP-DY 60
K+ L+ELK+ KD P + V+++ + T +G + G ++VSI+ P D
Sbjct: 160 KKALEELKEKYKDKPLYPANNTVSQEQANKWLTELGGTIGKVSQKNGGYVVSINMTPIDN 219
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALT 98
K N+ NG + LD K Q W+ +
Sbjct: 220 MLKSL----------DNLGGNGEVVLDNAKYQAWNAGFS 248
>pdb|2J0O|A Chain A, Shigella Flexneri Ipad
pdb|2J0O|B Chain B, Shigella Flexneri Ipad
Length = 318
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVSIHFPP-DY 60
K+ L+ELK+ KD P + V+++ + T +G + G ++VSI+ P D
Sbjct: 182 KKALEELKEKYKDKPLYPANNTVSQEQANKWLTELGGTIGKVSQKNGGYVVSINMTPIDN 241
Query: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALT 98
K N+ NG + LD K Q W+ +
Sbjct: 242 MLKSL----------DNLGGNGEVVLDNAKYQAWNAGFS 270
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 57 PPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSPA 96
P YP KPP ++ + F N I+SNG I L IL W PA
Sbjct: 90 PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPA 139
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Query: 57 PPDYPFKPPKVAFRTKVFHPN-----------INSNGSICLDILKEQWSPA 96
P YP KPP ++ + F N I+SNG I L IL W PA
Sbjct: 96 PSXYPVKPPFISINLENFDXNTISSSLPIQEYIDSNGWIALPIL-HCWDPA 145
>pdb|3CJM|A Chain A, Crystal Structure Of Putative Beta-Lactamase (Np_815223.1)
From Enterococcus Faecalis V583 At 1.50 A Resolution
Length = 282
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 17 PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK 63
P T A VA W I + Y G +++ + P+YP K
Sbjct: 82 PLTXLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLK 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,092,444
Number of Sequences: 62578
Number of extensions: 161572
Number of successful extensions: 412
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 129
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)