Query 033405
Match_columns 120
No_of_seqs 164 out of 1068
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 13:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.1E-48 2.4E-53 262.5 10.6 115 1-115 1-115 (148)
2 COG5078 Ubiquitin-protein liga 100.0 8.4E-48 1.8E-52 262.8 12.1 115 2-116 6-121 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 2.6E-46 5.6E-51 245.7 10.0 115 2-116 5-119 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.3E-44 2.9E-49 247.4 14.3 116 1-116 1-116 (147)
5 PTZ00390 ubiquitin-conjugating 100.0 7.6E-44 1.6E-48 244.7 14.1 115 2-116 3-117 (152)
6 KOG0421 Ubiquitin-protein liga 100.0 1.1E-41 2.3E-46 227.0 8.0 115 2-116 30-144 (175)
7 KOG0418 Ubiquitin-protein liga 100.0 3.6E-40 7.9E-45 228.0 10.0 113 2-114 4-120 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 1.7E-39 3.6E-44 219.0 11.1 115 2-116 6-134 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-39 4.6E-44 219.7 10.6 112 5-116 1-114 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 9.5E-39 2.1E-43 216.8 12.6 112 4-115 2-114 (141)
11 KOG0426 Ubiquitin-protein liga 100.0 7.7E-39 1.7E-43 210.7 9.9 116 1-116 4-133 (165)
12 KOG0424 Ubiquitin-protein liga 100.0 2.6E-38 5.6E-43 210.5 10.3 117 1-117 4-127 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 4E-37 8.7E-42 209.7 12.7 113 4-116 1-115 (145)
14 KOG0427 Ubiquitin conjugating 100.0 3.2E-35 6.9E-40 193.3 11.9 112 1-113 15-127 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 1.1E-33 2.4E-38 187.6 9.5 116 1-117 2-119 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 5.7E-32 1.2E-36 190.8 11.8 109 2-112 6-117 (244)
17 KOG0420 Ubiquitin-protein liga 100.0 3.5E-32 7.7E-37 186.0 7.4 112 2-116 29-144 (184)
18 KOG0423 Ubiquitin-protein liga 100.0 1.7E-31 3.7E-36 183.1 4.5 115 3-117 12-126 (223)
19 KOG0416 Ubiquitin-protein liga 99.9 4.7E-28 1E-32 165.5 7.4 111 2-115 4-116 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 2.3E-25 5E-30 160.3 9.8 106 2-110 12-120 (314)
21 KOG0429 Ubiquitin-conjugating 99.8 1.7E-19 3.7E-24 128.2 9.8 112 4-116 22-137 (258)
22 KOG0895 Ubiquitin-conjugating 99.8 1.7E-19 3.7E-24 150.0 7.1 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.8 5.5E-18 1.2E-22 141.1 10.7 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 6E-15 1.3E-19 97.7 8.5 114 5-118 9-129 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 5E-10 1.1E-14 72.5 3.1 63 50-112 13-77 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.9 2.6E-09 5.6E-14 71.9 6.4 67 46-112 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.5 2.6E-07 5.7E-12 61.3 6.1 78 30-112 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.5 1.1E-07 2.3E-12 64.1 3.3 95 3-103 26-135 (161)
29 KOG3357 Uncharacterized conser 98.1 1.1E-05 2.4E-10 53.8 5.2 95 3-103 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.5 0.001 2.2E-08 50.9 8.3 75 39-114 57-139 (365)
31 PF14462 Prok-E2_E: Prokaryoti 97.1 0.0081 1.8E-07 39.9 9.1 92 19-111 12-120 (122)
32 PF05773 RWD: RWD domain; Int 97.1 0.0022 4.8E-08 40.8 6.1 68 4-72 4-73 (113)
33 PF14457 Prok-E2_A: Prokaryoti 97.0 0.01 2.3E-07 41.2 8.8 69 51-119 56-133 (162)
34 smart00591 RWD domain in RING 97.0 0.014 3.1E-07 36.7 8.9 27 46-72 39-65 (107)
35 PF09765 WD-3: WD-repeat regio 93.4 0.18 3.8E-06 38.3 4.8 85 4-111 102-187 (291)
36 KOG0309 Conserved WD40 repeat- 86.9 4.2 9E-05 35.0 7.6 67 5-72 424-491 (1081)
37 KOG4018 Uncharacterized conser 86.7 1.9 4.2E-05 31.3 5.0 60 8-70 9-71 (215)
38 PF06113 BRE: Brain and reprod 86.3 2.8 6.2E-05 32.4 6.0 74 30-115 53-129 (333)
39 smart00340 HALZ homeobox assoc 68.4 4.9 0.00011 21.7 1.8 14 3-16 21-34 (44)
40 TIGR03737 PRTRC_B PRTRC system 66.8 10 0.00022 27.9 3.8 30 76-109 139-169 (228)
41 cd00421 intradiol_dioxygenase 66.5 11 0.00024 25.4 3.8 24 47-70 65-89 (146)
42 PF14460 Prok-E2_D: Prokaryoti 63.1 3.8 8.3E-05 28.6 1.0 14 76-89 98-111 (175)
43 cd03457 intradiol_dioxygenase_ 61.7 15 0.00032 26.1 3.8 25 46-70 85-109 (188)
44 cd03459 3,4-PCD Protocatechuat 55.7 22 0.00048 24.5 3.8 25 47-71 72-101 (158)
45 PF03366 YEATS: YEATS family; 51.8 54 0.0012 20.1 5.0 40 31-72 2-41 (84)
46 KOG4445 Uncharacterized conser 51.2 22 0.00048 27.4 3.4 25 48-72 45-69 (368)
47 PF14135 DUF4302: Domain of un 50.0 61 0.0013 23.6 5.6 47 2-59 10-56 (235)
48 cd05845 Ig2_L1-CAM_like Second 48.5 54 0.0012 20.5 4.5 26 45-72 16-41 (95)
49 KOG3285 Spindle assembly check 47.1 37 0.00079 24.2 3.8 54 3-67 121-174 (203)
50 PF04881 Adeno_GP19K: Adenovir 46.3 33 0.00073 23.0 3.3 31 26-56 43-74 (139)
51 KOG0177 20S proteasome, regula 45.0 12 0.00025 26.9 1.0 28 81-108 135-162 (200)
52 TIGR02423 protocat_alph protoc 44.9 37 0.00081 24.2 3.7 24 47-70 96-124 (193)
53 PF06113 BRE: Brain and reprod 43.9 35 0.00077 26.5 3.6 24 48-71 306-329 (333)
54 cd03463 3,4-PCD_alpha Protocat 42.2 45 0.00097 23.6 3.7 24 47-70 92-120 (185)
55 PF12065 DUF3545: Protein of u 40.6 21 0.00045 20.7 1.5 12 4-15 37-48 (59)
56 PF13950 Epimerase_Csub: UDP-g 40.5 34 0.00074 19.6 2.4 23 92-114 37-60 (62)
57 PF00845 Gemini_BL1: Geminivir 38.0 81 0.0018 23.7 4.5 47 29-75 101-155 (276)
58 KOG1047 Bifunctional leukotrie 35.2 40 0.00088 28.2 2.8 29 43-72 248-279 (613)
59 KOG0662 Cyclin-dependent kinas 33.1 34 0.00074 24.9 1.9 56 62-117 167-226 (292)
60 PF09606 Med15: ARC105 or Med1 32.9 14 0.00031 31.9 0.0 24 49-72 715-738 (799)
61 COG4957 Predicted transcriptio 32.6 23 0.0005 24.1 0.9 17 50-66 104-120 (148)
62 PRK15486 hpaC 4-hydroxyphenyla 32.0 36 0.00078 23.7 1.9 69 6-91 6-77 (170)
63 cd07356 HN_L-whirlin_R1_like F 31.8 51 0.0011 20.1 2.2 27 92-118 30-56 (78)
64 KOG1814 Predicted E3 ubiquitin 30.6 54 0.0012 26.4 2.8 22 50-71 76-98 (445)
65 COG0544 Tig FKBP-type peptidyl 29.9 1.5E+02 0.0032 24.0 5.2 16 48-63 209-224 (441)
66 TIGR02439 catechol_proteo cate 29.3 89 0.0019 23.8 3.7 24 47-70 180-221 (285)
67 TIGR02296 HpaC 4-hydroxyphenyl 28.5 40 0.00086 22.9 1.6 30 62-91 36-68 (154)
68 cd03461 1,2-HQD Hydroxyquinol 28.4 95 0.0021 23.5 3.7 24 47-70 172-213 (277)
69 PF09943 DUF2175: Uncharacteri 28.2 63 0.0014 20.8 2.3 20 31-52 1-20 (101)
70 COG3866 PelB Pectate lyase [Ca 28.0 1.3E+02 0.0027 23.5 4.2 41 31-71 197-240 (345)
71 cd03464 3,4-PCD_beta Protocate 27.6 1E+02 0.0022 22.5 3.7 24 47-70 122-152 (220)
72 PF00779 BTK: BTK motif; Inte 27.6 19 0.00042 18.1 -0.1 14 73-86 2-16 (32)
73 COG2819 Predicted hydrolase of 27.0 1.1E+02 0.0024 23.0 3.8 30 42-71 15-46 (264)
74 PHA03200 uracil DNA glycosylas 26.6 29 0.00063 26.0 0.7 57 30-89 82-153 (255)
75 cd03460 1,2-CTD Catechol 1,2 d 26.1 1.1E+02 0.0024 23.2 3.7 24 47-70 176-217 (282)
76 PHA03199 uracil DNA glycosylas 26.0 51 0.0011 25.3 1.9 45 21-68 119-174 (304)
77 PF11745 DUF3304: Protein of u 25.9 37 0.00079 22.1 1.0 21 80-100 49-69 (118)
78 PRK11700 hypothetical protein; 25.8 2.5E+02 0.0055 20.1 6.4 71 29-105 87-184 (187)
79 TIGR02422 protocat_beta protoc 25.6 1.2E+02 0.0025 22.2 3.7 24 47-70 117-147 (220)
80 PF09458 H_lectin: H-type lect 25.3 1.1E+02 0.0023 17.5 2.9 21 49-70 2-22 (72)
81 PF14909 SPATA6: Spermatogenes 25.1 2.3E+02 0.0049 19.3 5.5 50 20-72 86-137 (140)
82 PHA03201 uracil DNA glycosylas 24.9 88 0.0019 24.2 3.0 36 30-68 151-188 (318)
83 TIGR02438 catachol_actin catec 24.8 1.2E+02 0.0027 23.0 3.7 24 47-70 184-225 (281)
84 PF07849 DUF1641: Protein of u 23.7 66 0.0014 17.0 1.6 15 104-118 14-28 (42)
85 PF14455 Metal_CEHH: Predicted 23.6 1E+02 0.0022 21.5 2.8 63 6-72 10-76 (177)
86 TIGR03615 RutF pyrimidine util 23.0 59 0.0013 22.1 1.6 67 8-91 4-73 (156)
87 TIGR02465 chlorocat_1_2 chloro 22.8 1.5E+02 0.0032 22.1 3.8 25 46-70 149-191 (246)
88 PHA03204 uracil DNA glycosylas 22.2 1.2E+02 0.0027 23.5 3.3 43 23-68 135-188 (322)
89 PF06943 zf-LSD1: LSD1 zinc fi 21.8 54 0.0012 15.5 0.9 12 59-70 9-20 (25)
90 PF02970 TBCA: Tubulin binding 21.1 85 0.0018 19.4 1.9 14 2-15 8-21 (90)
91 PHA03347 uracil DNA glycosylas 21.0 65 0.0014 24.1 1.6 37 29-68 75-112 (252)
92 KOG4274 Positive cofactor 2 (P 20.9 1.8E+02 0.0039 24.7 4.2 14 51-64 662-675 (742)
93 KOG3696 Aspartyl beta-hydroxyl 20.9 84 0.0018 24.4 2.2 40 44-83 283-328 (334)
94 PF01383 CpcD: CpcD/allophycoc 20.2 1.1E+02 0.0025 17.1 2.2 23 3-25 33-55 (56)
95 smart00580 PUG domain in prote 20.2 99 0.0021 17.5 1.9 19 98-116 2-20 (58)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=262.54 Aligned_cols=115 Identities=67% Similarity=1.205 Sum_probs=112.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||.||++++++.+++++++.++++|+++|+++|.||.|||||||.|++.|.||++||+.||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
.|.||+|+|+++|+|+++|++||.+|++||++||.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~Pnp 115 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNP 115 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-48 Score=262.78 Aligned_cols=115 Identities=55% Similarity=1.057 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.+||++|++++++.+++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|+++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 689999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+||+|+|+++|+|++++++||.+|++||.+||+.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~ 121 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPD 121 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999874
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-46 Score=245.67 Aligned_cols=115 Identities=41% Similarity=0.866 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||.+|++.++++++.|++..|.++|++.|.++|.||.+|||+||+|++.+.|+++||.+||.|+|++.+||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|.+|+|+|...|+|+|++.+||.+||+||++|+-.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~ 119 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPN 119 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999853
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-44 Score=247.38 Aligned_cols=116 Identities=66% Similarity=1.149 Sum_probs=113.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
||.+||+||++++++++++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|.++|+|++++++||.+|++||.+|+..
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~ 116 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPD 116 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999753
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.6e-44 Score=244.74 Aligned_cols=115 Identities=41% Similarity=0.761 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
+.|||++|++++++++++++.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|.||+++|.++|+|++|+++||++|++||.+|+..
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~ 117 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPD 117 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999998753
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=226.95 Aligned_cols=115 Identities=37% Similarity=0.690 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
..|||++|+..|+-...+||++.|.++|++.|.++|.||.+|+|+|..|++.+.||.+||+.||+|+|.|++|||||+..
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~ 109 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLS 109 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|.||+|||+++|+..|++++||++||+||.+||+.
T Consensus 110 GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~ 144 (175)
T KOG0421|consen 110 GNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNS 144 (175)
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999975
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=228.03 Aligned_cols=113 Identities=43% Similarity=0.814 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhhcCC---CCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccc
Q 033405 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv 78 (120)
|.+|+++|.+++.+++ ..++.+...++|+.+.++.|.||+|||||||+|.+.|.+|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchh
Q 033405 79 N-SNGSICLDILKEQWSPALTISKAFTIVSEVGCIFL 114 (120)
Q Consensus 79 ~-~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~ 114 (120)
+ .+|.||+|+|++.|++++|++++|++||++|+.|+
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pE 120 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPE 120 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCC
Confidence 9 49999999999999999999999999999999886
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=219.01 Aligned_cols=115 Identities=38% Similarity=0.798 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|..-|+++|++|++++.+|+.+...++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|++++||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 345688999999999999999987766 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCC-------------CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILK-------------EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.+|++||- +.|+|..|+++||+||.+||++||+.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~ 134 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDE 134 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCC
Confidence 9999999992 56999999999999999999999985
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-39 Score=219.69 Aligned_cols=112 Identities=50% Similarity=0.979 Sum_probs=102.8
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCCe
Q 033405 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (120)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (120)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC-CCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 84 ICLDILKE-QWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 84 iCl~~l~~-~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+++|.. .|+|++++.+||.+|+++|.+|+..
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~ 114 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPE 114 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTT
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCC
Confidence 99999975 5999999999999999999999654
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=9.5e-39 Score=216.81 Aligned_cols=112 Identities=54% Similarity=1.014 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCCe
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (120)
|||++|+++++++++.|+++.+.++|+++|+++|.|+++|||+||.|++.|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC-CCCcCcHHHHHHHHHHHhhchhh
Q 033405 84 ICLDILKEQ-WSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 84 iCl~~l~~~-W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
||++++..+ |+|++++++||.+|+++|.+|+.
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~ 114 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNP 114 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCC
Confidence 999999876 99999999999999999999975
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-39 Score=210.70 Aligned_cols=116 Identities=39% Similarity=0.802 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
+|+|||++||++|-.++++||.+.|.+ +|++.|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999998875 5899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeecCCC-------------CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 80 SNGSICLDILK-------------EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.+|+||+++|. +.|+|.++++.||+++.+||++||.+
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdE 133 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDE 133 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999983 57999999999999999999999976
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=210.53 Aligned_cols=117 Identities=34% Similarity=0.736 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCC-----CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH 75 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~H 75 (120)
.|+.||+.|-+.+.++.+-|+++.|..+ |++.|.+.|.|+.||+||||.|.+++.||++||.+||+++|.++.||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 3678999999999999999999988753 69999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeEeecCCCCC--CCCcCcHHHHHHHHHHHhhchhhhh
Q 033405 76 PNINSNGSICLDILKEQ--WSPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 76 pnv~~~G~iCl~~l~~~--W~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
||||++|.|||++|.++ |+|+.||..||.+||.||.+||...
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~ 127 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITS 127 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999765 9999999999999999999999764
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4e-37 Score=209.69 Aligned_cols=113 Identities=55% Similarity=1.028 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCC
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (120)
+||++|+++++++.++++.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988876 999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCC-CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 83 SICLDILK-EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 83 ~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.+|++++. ++|+|+++++++|.+|+++|.+|+..
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~ 115 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPD 115 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 99999998 89999999999999999999998754
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-35 Score=193.33 Aligned_cols=112 Identities=34% Similarity=0.719 Sum_probs=107.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccc-cccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~ 79 (120)
.|++||+||+.+++.+++.|+... ..+|+.+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|+|.|..++ .|||||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 378999999999999999999887 788999999999999999999999999999999999999999999875 899999
Q ss_pred CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhch
Q 033405 80 SNGSICLDILKEQWSPALTISKAFTIVSEVGCIF 113 (120)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p 113 (120)
.+|.||+|+|.++|+|++++.+|.++|.+||++-
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999864
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=187.56 Aligned_cols=116 Identities=34% Similarity=0.690 Sum_probs=106.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeE-EeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~-~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
+|.+||.||+.+|+++....+. +...++|++.|.+.|. |++-||..|.|+++|.||.+|||.||+|.|.|+||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4889999999999998776543 4456789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEeecCC-CCCCCCcCcHHHHHHHHHHHhhchhhhh
Q 033405 80 SNGSICLDIL-KEQWSPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 80 ~~G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
+.|.+|+.++ .++|.|+.+..+||+++.+++++|+-+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~ 119 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEH 119 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccc
Confidence 9999999988 6889999999999999999999998654
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.7e-32 Score=190.84 Aligned_cols=109 Identities=34% Similarity=0.694 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.|||+|||+.|.+++.+.|.+.|.++|+.+||.+|.||++|||+||.|+.++.||++||++||.|+++|| +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 4556678
Q ss_pred CeEeecCC---CCCCCCcCcHHHHHHHHHHHhhc
Q 033405 82 GSICLDIL---KEQWSPALTISKAFTIVSEVGCI 112 (120)
Q Consensus 82 G~iCl~~l---~~~W~p~~~i~~vl~~i~~ll~~ 112 (120)
-++||++. .+.|+|.|++.+||.++.|+|.+
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhc
Confidence 89999887 58999999999999999999976
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-32 Score=185.98 Aligned_cols=112 Identities=34% Similarity=0.618 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeE--EeecCCCcc--eeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 2 ASKRILKELKDLQKDPPTSCS--AGPVAEDMF--HWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~--~~~~~~~~~--~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
|.-||++|..+++ -+++++ +....++++ +..++|. |+++.|.||.|.|.+.+|+.||++||+|+|.|++||||
T Consensus 29 a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 5667777777774 444444 222234444 4888988 99999999999999999999999999999999999999
Q ss_pred ccCCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 78 INSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 78 v~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|+.+|.||++||+++|+|+.++.+|+.++++||.+|+.+
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~e 144 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPE 144 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999864
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=183.07 Aligned_cols=115 Identities=37% Similarity=0.640 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCC
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (120)
+|.|.+|++++...+++||.|.++++|+....+.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||..+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhhh
Q 033405 83 SICLDILKEQWSPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 83 ~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
.||.+.|+.+|+|+.+|+.||..|++||..|+-+.
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPES 126 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPES 126 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHH
Confidence 99999999999999999999999999999998654
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-28 Score=165.52 Aligned_cols=111 Identities=32% Similarity=0.695 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc-C
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 80 (120)
+.||+..|...|.... ..|...++++.+++|.+.||.+|||+||.+++++.+|++||++.|.|.|+++||||||+ .
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 4689999988886543 45666788899999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHH-HHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTI-VSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~-i~~ll~~p~~ 115 (120)
+|.||+|.++..|+|.+.+.-|+.. |-.||.-||.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp 116 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNP 116 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCC
Confidence 9999999999999999999999864 5567776653
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-25 Score=160.31 Aligned_cols=106 Identities=37% Similarity=0.762 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.|||+||.++++ ++.+.....|.++|+++|+++|.||.+|-|+||.|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999998 787888899999999999999999999999999999999999999999999999996 5566778
Q ss_pred CeEeecCC---CCCCCCcCcHHHHHHHHHHHh
Q 033405 82 GSICLDIL---KEQWSPALTISKAFTIVSEVG 110 (120)
Q Consensus 82 G~iCl~~l---~~~W~p~~~i~~vl~~i~~ll 110 (120)
.+||+++. .+.|.|+|+|++.|.+|..+|
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFm 120 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFM 120 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccc
Confidence 89999988 588999999999999988876
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-19 Score=128.17 Aligned_cols=112 Identities=22% Similarity=0.340 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCC--CCCeEEEecccccccccC-
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF--KPPKVAFRTKVFHPNINS- 80 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~--~pP~v~f~t~i~Hpnv~~- 80 (120)
..|+.|+..+.+++.+||+|.|+.+|-+.|.++|+ ...+.|.||.|+|+|.+|++||. +-|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35788999999999999999999999999999999 56678999999999999999995 569999999999999995
Q ss_pred CCeEeecCCCCCCCCcC-cHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPAL-TISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-~i~~vl~~i~~ll~~p~~~ 116 (120)
++.+|++-....|+-.- +|..||..+|..|.+|++-
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~s 137 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVS 137 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccc
Confidence 89999987767798776 9999999999999999863
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-19 Score=149.97 Aligned_cols=109 Identities=28% Similarity=0.600 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc--cccccccCC
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 81 (120)
+..+.|++.+..+.+.+|.|...++.+.-.++.|.|+.+|||.+|.|.|.+.||++||.+||.|...+- .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445677788888899999999999988888999999999999999999999999999999999999864 689999999
Q ss_pred CeEeecCCC-------CCCCCcCcHHHHHHHHHHHhhc
Q 033405 82 GSICLDILK-------EQWSPALTISKAFTIVSEVGCI 112 (120)
Q Consensus 82 G~iCl~~l~-------~~W~p~~~i~~vl~~i~~ll~~ 112 (120)
|++|+++|. +.|+|+-++.+||.+||+|..+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999994 5699999999999999999643
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-18 Score=141.07 Aligned_cols=111 Identities=36% Similarity=0.656 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc---ccccccc
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~---i~Hpnv~ 79 (120)
.+|+++|++.+.++.++++.+.+.+..+...+++|.|+.+|||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999875 7899999
Q ss_pred CCCeEeecCCC-------CCCCCc-CcHHHHHHHHHHHhhch
Q 033405 80 SNGSICLDILK-------EQWSPA-LTISKAFTIVSEVGCIF 113 (120)
Q Consensus 80 ~~G~iCl~~l~-------~~W~p~-~~i~~vl~~i~~ll~~p 113 (120)
.+|+||+++|- +.|+|. .++.++|.+||.++.+-
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999982 679999 79999999999998764
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6e-15 Score=97.75 Aligned_cols=114 Identities=26% Similarity=0.443 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCC--C--cceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc-
Q 033405 5 RILKELKDLQKDPPTSCSAGPVAE--D--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN- 79 (120)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~--~--~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~- 79 (120)
||.+|+.+-++--.++..-.-.++ | +..|...|.||+.|+||+..|.++|...++||..||+|+|.+++--.-|.
T Consensus 9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~ 88 (138)
T KOG0896|consen 9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNS 88 (138)
T ss_pred hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccccc
Confidence 678888777776554433222222 2 68899999999999999999999999999999999999999998766666
Q ss_pred CCCeEeecCC--CCCCCCcCcHHHHHHHHHHHhhchhhhhh
Q 033405 80 SNGSICLDIL--KEQWSPALTISKAFTIVSEVGCIFLCLKT 118 (120)
Q Consensus 80 ~~G~iCl~~l--~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 118 (120)
.+|.+.-.-+ -.+|+-.++++.+|..++-.|....++++
T Consensus 89 ~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~eN~kl 129 (138)
T KOG0896|consen 89 SNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSKENRKL 129 (138)
T ss_pred CCCccCccccchhhcccccchhhHHHHhhhHHHHHHHhhcc
Confidence 4666664222 38999999999999999998888877765
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5e-10 Score=72.52 Aligned_cols=63 Identities=22% Similarity=0.467 Sum_probs=53.1
Q ss_pred EEEEEECCCCCCCCCCeEEEeccc-ccccccCCCeEeecCC-CCCCCCcCcHHHHHHHHHHHhhc
Q 033405 50 FLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDIL-KEQWSPALTISKAFTIVSEVGCI 112 (120)
Q Consensus 50 f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~~~G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~ 112 (120)
..+.+.|+++||+.||.++...|. --..|-.+|+||+.++ .++|+++++++.++++|.+.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhc
Confidence 456788999999999999998764 3345667999999999 57899999999999999887653
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.95 E-value=2.6e-09 Score=71.88 Aligned_cols=67 Identities=27% Similarity=0.670 Sum_probs=60.8
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEeccc---ccccccCCCeEee---cCCCCCCCCcCcHHHHHHHHHHHhhc
Q 033405 46 AGGVFLVSIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKAFTIVSEVGCI 112 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~iCl---~~l~~~W~p~~~i~~vl~~i~~ll~~ 112 (120)
.|+.+.+.+.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|..++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999998653 6899999999999 77789999999999999999998874
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.54 E-value=2.6e-07 Score=61.28 Aligned_cols=78 Identities=26% Similarity=0.514 Sum_probs=53.5
Q ss_pred cceeEEEEeCCCCCCCCCCEEE--EEEECCCCCCCCCCeEEEeccc-----ccccccCCCeEeecCCCCCCCC-cCcHHH
Q 033405 30 MFHWQATIMGPPDSPYAGGVFL--VSIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (120)
Q Consensus 30 ~~~w~~~i~gp~~tpy~gg~f~--~~l~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~iCl~~l~~~W~p-~~~i~~ 101 (120)
+....++|. -.|+|.+|. +.|-+|.+||.+||.+...... -+.+|+.+|++.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 555555553 248888885 5566899999999999876321 2348999999999888 88988 779999
Q ss_pred HHHHHHHHhhc
Q 033405 102 AFTIVSEVGCI 112 (120)
Q Consensus 102 vl~~i~~ll~~ 112 (120)
++..++..|++
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99988888764
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.50 E-value=1.1e-07 Score=64.10 Aligned_cols=95 Identities=22% Similarity=0.374 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCE----------EEEEEECCCCCCCCCCeEEEecc
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
..||..||+.|-+ +++.+.++-..|+-.=..++||-|.|.+ |.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999998854 3333333334443333335555554433 55666679999999999987421
Q ss_pred -cccccccCCCeEeecCCC-CCC---CCcCcHHHHH
Q 033405 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKAF 103 (120)
Q Consensus 73 -i~Hpnv~~~G~iCl~~l~-~~W---~p~~~i~~vl 103 (120)
=-..-.|.+|+||++.-. .-| .|.++|...+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 012234579999998763 335 6888888775
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.1e-05 Score=53.78 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCE----------EEEEEECCCCCCCCCCeEEEecc
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+||..||+.+.+ +++.+.++-..|+-.-..++||-|-|.+ |.+++.+|-.||..+|.+..-.-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999865 3444455556676555568888888754 55566679999999999876321
Q ss_pred -cccccccCCCeEeec-CCCCCC---CCcCcHHHHH
Q 033405 73 -VFHPNINSNGSICLD-ILKEQW---SPALTISKAF 103 (120)
Q Consensus 73 -i~Hpnv~~~G~iCl~-~l~~~W---~p~~~i~~vl 103 (120)
--.--.|.+|+||+. ..+.-| .|.++|...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 011224568999985 345556 5666766654
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.001 Score=50.91 Aligned_cols=75 Identities=20% Similarity=0.412 Sum_probs=58.4
Q ss_pred CCCCCCCCCCEEEEEEE--CCCCCCCCCCeEEEec-c----cccccccCCCeEeecCCCCCCCC-cCcHHHHHHHHHHHh
Q 033405 39 GPPDSPYAGGVFLVSIH--FPPDYPFKPPKVAFRT-K----VFHPNINSNGSICLDILKEQWSP-ALTISKAFTIVSEVG 110 (120)
Q Consensus 39 gp~~tpy~gg~f~~~l~--fp~~YP~~pP~v~f~t-~----i~Hpnv~~~G~iCl~~l~~~W~p-~~~i~~vl~~i~~ll 110 (120)
|---.+|.|.+|.+=|. +.+.||..||.+.... . -.|-||+.+|.|.|..| .+|.+ +.++..+++-+.+.|
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAF 135 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHh
Confidence 43345788888776555 6999999999987652 1 13899999999999999 78965 558999988888888
Q ss_pred hchh
Q 033405 111 CIFL 114 (120)
Q Consensus 111 ~~p~ 114 (120)
+++.
T Consensus 136 ~~~p 139 (365)
T KOG2391|consen 136 SEDP 139 (365)
T ss_pred cCCC
Confidence 7753
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.15 E-value=0.0081 Score=39.88 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=61.0
Q ss_pred CCeEEeecCCCcceeEEEEeC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccc-------cccc-----CCCeE
Q 033405 19 TSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH-------PNIN-----SNGSI 84 (120)
Q Consensus 19 ~~i~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~H-------pnv~-----~~G~i 84 (120)
.|+..+...+.-..|-+ |.| .+.+.|....-.+-|.+|+.||..+|.+.+..|-.. |+-. -.|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 35555655566666755 555 666779999999999999999999998776654221 1100 12221
Q ss_pred e--ecCCCCCCCCcC-cHHHHHHHHHHHhh
Q 033405 85 C--LDILKEQWSPAL-TISKAFTIVSEVGC 111 (120)
Q Consensus 85 C--l~~l~~~W~p~~-~i~~vl~~i~~ll~ 111 (120)
- .|--...|+|.. ++.+.|..|...|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1 121235699988 89999988887764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.11 E-value=0.0022 Score=40.83 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+.+.|+..|+.--++.. ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|...+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 466788888877544444 22234455556666632 334444556899999999999999999988764
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.98 E-value=0.01 Score=41.23 Aligned_cols=69 Identities=26% Similarity=0.279 Sum_probs=55.9
Q ss_pred EEEEECCCCCCCCCCeEEEeccc---ccccccCC-----CeEeecCC-CCCCCCcCcHHHHHHHHHHHhhchhhhhhc
Q 033405 51 LVSIHFPPDYPFKPPKVAFRTKV---FHPNINSN-----GSICLDIL-KEQWSPALTISKAFTIVSEVGCIFLCLKTH 119 (120)
Q Consensus 51 ~~~l~fp~~YP~~pP~v~f~t~i---~Hpnv~~~-----G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~p~~~~~~ 119 (120)
.+.+.|+.+||..+|.|.+..+. .+||+... ..+|+.-- -..|.++.++..+|..|...|.+=-+.++|
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~aA~g~Lh 133 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRDAAQGTLH 133 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHHHhhcccC
Confidence 45789999999999987776543 35888755 78998544 367999999999999999999988877777
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.97 E-value=0.014 Score=36.72 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 46 AGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.36 E-value=0.18 Score=38.30 Aligned_cols=85 Identities=19% Similarity=0.413 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCCe
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (120)
++|.+|+.++..+....+ . .++++...++.+.. +.....+++.++.+||.++|.+..--++
T Consensus 102 s~ll~EIe~IGW~kl~~i--~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQI--Q-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCEEE--E-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccceEE--e-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 567888888866444222 1 36788888888872 2267889999999999999975332221
Q ss_pred EeecCCCCCCCC-cCcHHHHHHHHHHHhh
Q 033405 84 ICLDILKEQWSP-ALTISKAFTIVSEVGC 111 (120)
Q Consensus 84 iCl~~l~~~W~p-~~~i~~vl~~i~~ll~ 111 (120)
.+...|.+ ..++.+++...+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11245888 6688888877776654
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.94 E-value=4.2 Score=35.04 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCC-CCeEEEecc
Q 033405 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFK-PPKVAFRTK 72 (120)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~-pP~v~f~t~ 72 (120)
-|..|+..|-.. .+.+.++-.+..-..-.+.+.+|----=..-..++.|.||.+||.. +|.+.|..+
T Consensus 424 nLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 355566555332 2233333222233455666666443321123357889999999995 689998743
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.75 E-value=1.9 Score=31.25 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCCe-EEeecCCCcceeEEEEeCCCCC--CCCCCEEEEEEECCCCCCCCCCeEEEe
Q 033405 8 KELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDS--PYAGGVFLVSIHFPPDYPFKPPKVAFR 70 (120)
Q Consensus 8 ~E~~~l~~~~~~~i-~~~~~~~~~~~w~~~i~gp~~t--py~gg~f~~~l~fp~~YP~~pP~v~f~ 70 (120)
+|+..|...-+..+ .+ .+.+...+.+.|.--.+. -|.+ .+.+.+.++.+||.+||-+.+.
T Consensus 9 ~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 9 EELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 45666655433333 22 233443455666521111 1223 7889999999999999999443
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=86.27 E-value=2.8 Score=32.41 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=49.7
Q ss_pred cceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec-ccccccccCCCeEeecCCCCCCCCcC--cHHHHHHHH
Q 033405 30 MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT-KVFHPNINSNGSICLDILKEQWSPAL--TISKAFTIV 106 (120)
Q Consensus 30 ~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t-~i~Hpnv~~~G~iCl~~l~~~W~p~~--~i~~vl~~i 106 (120)
...+++.| ||.|...+-.|.|...||..||-+.|.. .-|+|... . +..| .+|++.- .+..++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 34555555 5999999999999999999999999963 34777321 1 1222 6787765 555666666
Q ss_pred HHHhhchhh
Q 033405 107 SEVGCIFLC 115 (120)
Q Consensus 107 ~~ll~~p~~ 115 (120)
..+..+-..
T Consensus 121 ~~~Y~~yQ~ 129 (333)
T PF06113_consen 121 RQLYKEYQI 129 (333)
T ss_pred HHHHHHHHH
Confidence 655444433
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=68.37 E-value=4.9 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcC
Q 033405 3 SKRILKELKDLQKD 16 (120)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (120)
.+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999764
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=66.82 E-value=10 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=18.4
Q ss_pred ccccCCCeEeecCCCCCCCCcC-cHHHHHHHHHHH
Q 033405 76 PNINSNGSICLDILKEQWSPAL-TISKAFTIVSEV 109 (120)
Q Consensus 76 pnv~~~G~iCl~~l~~~W~p~~-~i~~vl~~i~~l 109 (120)
.||+.+|+||+.-.+ .|.. ++.+ +......
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~ 169 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDA 169 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHH
Confidence 389999999996543 3433 4444 4444443
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=66.51 E-value=11 Score=25.44 Aligned_cols=24 Identities=29% Similarity=0.658 Sum_probs=21.9
Q ss_pred CCEEEEEEECCCCCC-CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP-FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP-~~pP~v~f~ 70 (120)
.|.|.|.-.+|-.|| .+||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999886
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=63.09 E-value=3.8 Score=28.60 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.6
Q ss_pred ccccCCCeEeecCC
Q 033405 76 PNINSNGSICLDIL 89 (120)
Q Consensus 76 pnv~~~G~iCl~~l 89 (120)
+||+.+|+||+...
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 48999999999653
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=61.72 E-value=15 Score=26.14 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYPFKPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~~pP~v~f~ 70 (120)
+.|.|.|+=.+|--||.++|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3588999999999999999999886
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=55.68 E-value=22 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCEEEEEEECCCCCC-----CCCCeEEEec
Q 033405 47 GGVFLVSIHFPPDYP-----FKPPKVAFRT 71 (120)
Q Consensus 47 gg~f~~~l~fp~~YP-----~~pP~v~f~t 71 (120)
.|.|.|+=.+|--|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998863
No 45
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=51.81 E-value=54 Score=20.08 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=27.0
Q ss_pred ceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 31 FHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 31 ~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+|.+.+.|+.+.--..-.=++.+.+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47999999987765555667788889999886 55555554
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.25 E-value=22 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.7
Q ss_pred CEEEEEEECCCCCCCCCCeEEEecc
Q 033405 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 48 g~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
-.+.+.+..++.||.+.|+|....|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3578889999999999999999765
No 47
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=49.97 E-value=61 Score=23.56 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPD 59 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~ 59 (120)
+..|+.+.++++++.. .+...-|++... |...---|| |.|.+.|.++
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~ 56 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDD 56 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCC
Confidence 5678887776665521 222233666666 333321233 7777777544
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=48.52 E-value=54 Score=20.51 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 45 YAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 45 y~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778888888899999 599998864
No 49
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.11 E-value=37 Score=24.24 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKV 67 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v 67 (120)
.+|+++|.+.+.+.-...++..|.-+-.-.+.+.++-..++ ..|.++-.+-|++
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 58999999999999888888888877777788887754443 3455555554543
No 50
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=46.30 E-value=33 Score=23.05 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred cCCCcceeEEEEeCCCCCCCC-CCEEEEEEEC
Q 033405 26 VAEDMFHWQATIMGPPDSPYA-GGVFLVSIHF 56 (120)
Q Consensus 26 ~~~~~~~w~~~i~gp~~tpy~-gg~f~~~l~f 56 (120)
..+|...|.|++.|++|++.. ..+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 356788899999999999874 4555555555
No 51
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=12 Score=26.86 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=23.4
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHH
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSE 108 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ 108 (120)
.+..|++++...|+|.+|.++.+.-++-
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkK 162 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKK 162 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHH
Confidence 5679999999999999999988765543
No 52
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=44.92 E-value=37 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~-----~pP~v~f~ 70 (120)
.|.|.|+=..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999998 88888775
No 53
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=43.90 E-value=35 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=20.7
Q ss_pred CEEEEEEECCCCCCCCCCeEEEec
Q 033405 48 GVFLVSIHFPPDYPFKPPKVAFRT 71 (120)
Q Consensus 48 g~f~~~l~fp~~YP~~pP~v~f~t 71 (120)
-.|-+.+.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 347777888999999999999986
No 54
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.15 E-value=45 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~-----~pP~v~f~ 70 (120)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 88887664
No 55
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=40.56 E-value=21 Score=20.66 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhc
Q 033405 4 KRILKELKDLQK 15 (120)
Q Consensus 4 ~RL~~E~~~l~~ 15 (120)
+||++|++++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 689999998854
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=40.52 E-value=34 Score=19.63 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=13.0
Q ss_pred CCCCcCcHHHHHHHHHHH-hhchh
Q 033405 92 QWSPALTISKAFTIVSEV-GCIFL 114 (120)
Q Consensus 92 ~W~p~~~i~~vl~~i~~l-l~~p~ 114 (120)
+|.|.+++.+++...-.. -.+|+
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcC
Confidence 699999999999765443 33444
No 57
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=37.98 E-value=81 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=30.9
Q ss_pred CcceeEEEEeCCCCCCCCC---CEEEEEEECC-----CCCCCCCCeEEEeccccc
Q 033405 29 DMFHWQATIMGPPDSPYAG---GVFLVSIHFP-----PDYPFKPPKVAFRTKVFH 75 (120)
Q Consensus 29 ~~~~w~~~i~gp~~tpy~g---g~f~~~l~fp-----~~YP~~pP~v~f~t~i~H 75 (120)
|..-|++.....+.-...| ..|+.++.++ .|-||+||+|+.+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4555877776433333333 2366666664 789999999999987553
No 58
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=35.21 E-value=40 Score=28.18 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEECCCCCCC---CCCeEEEecc
Q 033405 43 SPYAGGVFLVSIHFPPDYPF---KPPKVAFRTK 72 (120)
Q Consensus 43 tpy~gg~f~~~l~fp~~YP~---~pP~v~f~t~ 72 (120)
+||.=|+|-+ +.+|++||+ +-|-+.|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4777788885 567999998 5799999987
No 59
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=33.12 E-value=34 Score=24.89 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCCCeEEEeccccccccc--CCCeEeecCCCCCC--CCcCcHHHHHHHHHHHhhchhhhh
Q 033405 62 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 62 ~~pP~v~f~t~i~Hpnv~--~~G~iCl~~l~~~W--~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
.+||.|.|-.+.|.-.|+ +-|-|--++-..+| -|.-.+.+-|..|-.++..|+-.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 368999999999988887 34544445555666 677888888999988888887543
No 60
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=32.91 E-value=14 Score=31.94 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCCCCCeEEEecc
Q 033405 49 VFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 49 ~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.=-++|.+|.|||..+|.+.+.+.
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp ------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHH
Confidence 445788999999999999877543
No 61
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=32.59 E-value=23 Score=24.06 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=13.2
Q ss_pred EEEEEECCCCCCCCCCe
Q 033405 50 FLVSIHFPPDYPFKPPK 66 (120)
Q Consensus 50 f~~~l~fp~~YP~~pP~ 66 (120)
|+-.-.+|.|||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 44556789999999885
No 62
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=32.03 E-value=36 Score=23.67 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe---cccccccccCCC
Q 033405 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFR---TKVFHPNINSNG 82 (120)
Q Consensus 6 L~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G 82 (120)
+..++++.+..-..|+++....++ +.+ .|-+-.--..++ .+||.|-+. ...-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888888876543211 111 111111111222 469998875 235688888999
Q ss_pred eEeecCCCC
Q 033405 83 SICLDILKE 91 (120)
Q Consensus 83 ~iCl~~l~~ 91 (120)
..|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999954
No 63
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=31.79 E-value=51 Score=20.06 Aligned_cols=27 Identities=4% Similarity=-0.175 Sum_probs=22.9
Q ss_pred CCCCcCcHHHHHHHHHHHhhchhhhhh
Q 033405 92 QWSPALTISKAFTIVSEVGCIFLCLKT 118 (120)
Q Consensus 92 ~W~p~~~i~~vl~~i~~ll~~p~~~~~ 118 (120)
.+...-++.+++.+|..+|.+|+-+|.
T Consensus 30 ~Y~~~RnV~~Lv~sL~~vLd~P~Krql 56 (78)
T cd07356 30 DYHAKRNVYDLVQSLKVVLDTPEKRQL 56 (78)
T ss_pred HHHhcccHHHHHHHHHHHhCCHhHhHH
Confidence 466667999999999999999987764
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=54 Score=26.39 Aligned_cols=22 Identities=36% Similarity=0.919 Sum_probs=14.9
Q ss_pred EEEEEECCCCCCCC-CCeEEEec
Q 033405 50 FLVSIHFPPDYPFK-PPKVAFRT 71 (120)
Q Consensus 50 f~~~l~fp~~YP~~-pP~v~f~t 71 (120)
..+.+.+|++||.. ||++...+
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeeecCCccccCCCCceeeeh
Confidence 34667789999985 56654443
No 65
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=1.5e+02 Score=23.97 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.2
Q ss_pred CEEEEEEECCCCCCCC
Q 033405 48 GVFLVSIHFPPDYPFK 63 (120)
Q Consensus 48 g~f~~~l~fp~~YP~~ 63 (120)
....+.+.||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 4477899999999984
No 66
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=29.33 E-value=89 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=.+|.-|| .+||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 478999999999997 578888875
No 67
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=28.50 E-value=40 Score=22.87 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=23.8
Q ss_pred CCCCeEEEe---cccccccccCCCeEeecCCCC
Q 033405 62 FKPPKVAFR---TKVFHPNINSNGSICLDILKE 91 (120)
Q Consensus 62 ~~pP~v~f~---t~i~Hpnv~~~G~iCl~~l~~ 91 (120)
.+||.|-+. ...-|+.+..+|..|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 579998875 335688899999999999953
No 68
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=28.39 E-value=95 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=..|.-|| .+||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 588999999999999 478888775
No 69
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=28.21 E-value=63 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=16.3
Q ss_pred ceeEEEEeCCCCCCCCCCEEEE
Q 033405 31 FHWQATIMGPPDSPYAGGVFLV 52 (120)
Q Consensus 31 ~~w~~~i~gp~~tpy~gg~f~~ 52 (120)
..|++.+-| +..|+|..|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 369999987 56899999886
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=27.96 E-value=1.3e+02 Score=23.51 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=29.0
Q ss_pred ceeEEEEeCCCCC-CCCCCEEEEEEECC--CCCCCCCCeEEEec
Q 033405 31 FHWQATIMGPPDS-PYAGGVFLVSIHFP--PDYPFKPPKVAFRT 71 (120)
Q Consensus 31 ~~w~~~i~gp~~t-py~gg~f~~~l~fp--~~YP~~pP~v~f~t 71 (120)
.+|+..+.|-+++ -|++|.+++++.-. ++-=.+.|.|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 4689999995555 78899999888621 33344567999853
No 71
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.62 E-value=1e+02 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~-------~pP~v~f~ 70 (120)
.|.|.|.=..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999975 89998874
No 72
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=27.57 E-value=19 Score=18.08 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=8.2
Q ss_pred cccccccCCCe-Eee
Q 033405 73 VFHPNINSNGS-ICL 86 (120)
Q Consensus 73 i~Hpnv~~~G~-iCl 86 (120)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999997765 453
No 73
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.97 E-value=1.1e+02 Score=23.00 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCCCCCEEEEEEECCCCCCCCC--CeEEEec
Q 033405 42 DSPYAGGVFLVSIHFPPDYPFKP--PKVAFRT 71 (120)
Q Consensus 42 ~tpy~gg~f~~~l~fp~~YP~~p--P~v~f~t 71 (120)
.+.+.|..|++.+..|.+||-.. |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45688899999999999999988 9999874
No 74
>PHA03200 uracil DNA glycosylase; Provisional
Probab=26.61 E-value=29 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=32.5
Q ss_pred cceeEEEEeCCCCCCCCCCE-EEEEEECCCCCCCCCCeEEEecc-----------ccccccc---CCCeEeecCC
Q 033405 30 MFHWQATIMGPPDSPYAGGV-FLVSIHFPPDYPFKPPKVAFRTK-----------VFHPNIN---SNGSICLDIL 89 (120)
Q Consensus 30 ~~~w~~~i~gp~~tpy~gg~-f~~~l~fp~~YP~~pP~v~f~t~-----------i~Hpnv~---~~G~iCl~~l 89 (120)
+..-+|+|.| ..||.+|. --+.+..+++++. ||..+=+-+ .-|.+.. ..|.+.|+..
T Consensus 82 ~~~vKVVIlG--QDPYh~gqA~GLaFSV~~~~~~-PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtv 153 (255)
T PHA03200 82 PEDVKVVIVG--QDPYHDGSACGLAFGTVRGRSA-PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTV 153 (255)
T ss_pred hhheEEEEEe--cCCCCCCccceEEEEeCCCCCC-CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeee
Confidence 3446899998 34777643 3344555777775 776553211 1234443 3688777644
No 75
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=26.06 E-value=1.1e+02 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.2
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=..|.-|| .+||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 578888775
No 76
>PHA03199 uracil DNA glycosylase; Provisional
Probab=25.98 E-value=51 Score=25.32 Aligned_cols=45 Identities=24% Similarity=0.525 Sum_probs=26.0
Q ss_pred eEEeecCCCcce---------eEEEEeCCCCCCCCC--CEEEEEEECCCCCCCCCCeEE
Q 033405 21 CSAGPVAEDMFH---------WQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKVA 68 (120)
Q Consensus 21 i~~~~~~~~~~~---------w~~~i~gp~~tpy~g--g~f~~~l~fp~~YP~~pP~v~ 68 (120)
..+.|..++++. -+|+|.| ..||.| -.--+.+..+++.+. ||..+
T Consensus 119 ~~IyPp~~~IF~af~~tp~~~VKVVILG--QDPYh~~gqA~GLaFSV~~gv~i-PPSL~ 174 (304)
T PHA03199 119 EEIFPIKGDIFAWTRFCGPEKIRVVIIG--QDPYHGAGHAHGLAFSVKRGIPI-PPSLK 174 (304)
T ss_pred CeEcCCHHHHHHHHhcCCHHHcEEEEEe--cCCCCCCCccceEEEecCCCCCC-CccHH
Confidence 345666655444 4899998 347764 333444445666554 66654
No 77
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=25.94 E-value=37 Score=22.05 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=15.4
Q ss_pred CCCeEeecCCCCCCCCcCcHH
Q 033405 80 SNGSICLDILKEQWSPALTIS 100 (120)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~~i~ 100 (120)
.+|.+|--.+.++|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 355667767779999998753
No 78
>PRK11700 hypothetical protein; Provisional
Probab=25.81 E-value=2.5e+02 Score=20.05 Aligned_cols=71 Identities=18% Similarity=0.426 Sum_probs=44.5
Q ss_pred CcceeEEEE---eCCCCCCC-CCCEEEEEEECC--------------CCCCCCCCeEEEe--cc------ccccccc-CC
Q 033405 29 DMFHWQATI---MGPPDSPY-AGGVFLVSIHFP--------------PDYPFKPPKVAFR--TK------VFHPNIN-SN 81 (120)
Q Consensus 29 ~~~~w~~~i---~gp~~tpy-~gg~f~~~l~fp--------------~~YP~~pP~v~f~--t~------i~Hpnv~-~~ 81 (120)
....|.+.+ .-|.+.-| ..|.=++++.+| ++.|..++-|++. +| .-+|-|. ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 456676544 33555555 457888999988 3345555545544 33 4677776 68
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHH
Q 033405 82 GSICLDILKEQWSPALTISKAFTI 105 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~ 105 (120)
|.+|+.+- -+++++|+.+
T Consensus 167 ~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CCEEEEEc------CccHHHHHHh
Confidence 99998654 2577777654
No 79
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.58 E-value=1.2e+02 Score=22.19 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~-------~pP~v~f~ 70 (120)
.|.|.|.=.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999986 89998874
No 80
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=25.29 E-value=1.1e+02 Score=17.47 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=12.1
Q ss_pred EEEEEEECCCCCCCCCCeEEEe
Q 033405 49 VFLVSIHFPPDYPFKPPKVAFR 70 (120)
Q Consensus 49 ~f~~~l~fp~~YP~~pP~v~f~ 70 (120)
.+...|.|+..|.. ||+|.+.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999999987 8888764
No 81
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.09 E-value=2.3e+02 Score=19.29 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=34.2
Q ss_pred CeEEeecCCCcceeEEEEe-CCCC-CCCCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 20 SCSAGPVAEDMFHWQATIM-GPPD-SPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 20 ~i~~~~~~~~~~~w~~~i~-gp~~-tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
|.....-++|.... ++ .|.- +-|.|-.-.+.+.=...||--+|++.|.|+
T Consensus 86 g~iLA~ye~n~rDf---LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 86 GEILAYYEENTRDF---LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CcEEEEEeccccce---EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 44444445555544 33 2332 346777888899999999999999999875
No 82
>PHA03201 uracil DNA glycosylase; Provisional
Probab=24.88 E-value=88 Score=24.24 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=21.1
Q ss_pred cceeEEEEeCCCCCCCCC--CEEEEEEECCCCCCCCCCeEE
Q 033405 30 MFHWQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKVA 68 (120)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g--g~f~~~l~fp~~YP~~pP~v~ 68 (120)
+.+.+|+|.| ..||.| ..--+-+..+++.+. ||..+
T Consensus 151 ~~~VKVVILG--QDPYh~pgqA~GLaFSV~~gv~~-PpSLr 188 (318)
T PHA03201 151 PDEVRVVIIG--QDPYHQPGQAHGLAFSVRPGTPA-PPSLR 188 (318)
T ss_pred HhHcEEEEEe--cCCCCCCCCcceEeeecCCCCCC-ChhHH
Confidence 3345899998 447743 444444555666553 66654
No 83
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.76 E-value=1.2e+02 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=..|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 588999999998887 578888775
No 84
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=23.74 E-value=66 Score=16.98 Aligned_cols=15 Identities=0% Similarity=-0.545 Sum_probs=10.7
Q ss_pred HHHHHHhhchhhhhh
Q 033405 104 TIVSEVGCIFLCLKT 118 (120)
Q Consensus 104 ~~i~~ll~~p~~~~~ 118 (120)
..+-.+|.|||..+.
T Consensus 14 ~gl~~~l~Dpdvqrg 28 (42)
T PF07849_consen 14 FGLLRALRDPDVQRG 28 (42)
T ss_pred HHHHHHHcCHHHHHH
Confidence 455677889988763
No 85
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=23.65 E-value=1e+02 Score=21.50 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCC----CCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 6 ILKELKDLQKDP----PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 6 L~~E~~~l~~~~----~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
..+|.+.+.... -.|+.+. +.+.=...+.+..|+-.|-. -...+++.| .||-..||.|.|+.+
T Consensus 10 FdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 10 FDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 445666665432 1344433 33333344444445545422 124566666 799999999999865
No 86
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=22.95 E-value=59 Score=22.06 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe---cccccccccCCCeE
Q 033405 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFR---TKVFHPNINSNGSI 84 (120)
Q Consensus 8 ~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G~i 84 (120)
+++++.+..-..|+.+....+ .++ ..-+.+.-=..--.+||.+.+. +..-|+.+..+|..
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~------------~~~-----~~g~tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG------------PAG-----RAGFTASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec------------CCC-----ceeEEEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 467777777777776543221 111 1111222112234579998885 33567888999999
Q ss_pred eecCCCC
Q 033405 85 CLDILKE 91 (120)
Q Consensus 85 Cl~~l~~ 91 (120)
++++|.+
T Consensus 67 ~VnvL~~ 73 (156)
T TIGR03615 67 CVNTLAA 73 (156)
T ss_pred EEEECcH
Confidence 9999953
No 87
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=22.84 E-value=1.5e+02 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.696 Sum_probs=20.3
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
+.|.|.|+=..|.-|| .+||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3588999999999997 368888775
No 88
>PHA03204 uracil DNA glycosylase; Provisional
Probab=22.22 E-value=1.2e+02 Score=23.51 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=24.4
Q ss_pred EeecCCCcce---------eEEEEeCCCCCCCCC--CEEEEEEECCCCCCCCCCeEE
Q 033405 23 AGPVAEDMFH---------WQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKVA 68 (120)
Q Consensus 23 ~~~~~~~~~~---------w~~~i~gp~~tpy~g--g~f~~~l~fp~~YP~~pP~v~ 68 (120)
+.|..++++. -+|+|.| ..||.+ -.--+.+..++..+. ||..+
T Consensus 135 IyPp~~~IF~af~~tp~~~VKVVILG--QDPYh~pgqA~GLaFSV~~gv~i-PpSLr 188 (322)
T PHA03204 135 VYPPKSDIFAWTRYCAPDHVKVVIVG--QDPYANPGQAHGLAFSVKPGSPI-PPSLK 188 (322)
T ss_pred cCCCHHHHHHHHhcCChhHeEEEEEe--cCCCCCCCccceEEEEcCCCCCC-CccHH
Confidence 5566665554 4889988 347764 233344445555553 66554
No 89
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=21.76 E-value=54 Score=15.54 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=9.4
Q ss_pred CCCCCCCeEEEe
Q 033405 59 DYPFKPPKVAFR 70 (120)
Q Consensus 59 ~YP~~pP~v~f~ 70 (120)
.||..++.|++.
T Consensus 9 ~yp~GA~sVrCa 20 (25)
T PF06943_consen 9 MYPRGAPSVRCA 20 (25)
T ss_pred EcCCCCCCeECC
Confidence 388888888864
No 90
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.07 E-value=85 Score=19.42 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhhc
Q 033405 2 ASKRILKELKDLQK 15 (120)
Q Consensus 2 a~~RL~~E~~~l~~ 15 (120)
|.+||.||+....+
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56888888865543
No 91
>PHA03347 uracil DNA glycosylase; Provisional
Probab=21.04 E-value=65 Score=24.10 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=23.9
Q ss_pred CcceeEEEEeCCCCCCCCCCE-EEEEEECCCCCCCCCCeEE
Q 033405 29 DMFHWQATIMGPPDSPYAGGV-FLVSIHFPPDYPFKPPKVA 68 (120)
Q Consensus 29 ~~~~w~~~i~gp~~tpy~gg~-f~~~l~fp~~YP~~pP~v~ 68 (120)
.+..-+|+|.| ..||.||. --+.+..+++.+. ||..+
T Consensus 75 p~~~vKVVIlG--QDPYh~gqA~GLaFSV~~~~~~-PpSL~ 112 (252)
T PHA03347 75 DPEDIKVVILG--QDPYHGGQANGLAFSVAYGFPV-PPSLR 112 (252)
T ss_pred ChhHcEEEEEe--cCCCCCCccceEEEecCCCCCC-CccHH
Confidence 34556899998 34777643 4455566777765 77654
No 92
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=20.94 E-value=1.8e+02 Score=24.70 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.6
Q ss_pred EEEEECCCCCCCCC
Q 033405 51 LVSIHFPPDYPFKP 64 (120)
Q Consensus 51 ~~~l~fp~~YP~~p 64 (120)
-+++..|.+||.-.
T Consensus 662 Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 662 PLRLSVPTTYPAQN 675 (742)
T ss_pred Ceeeeccccccccc
Confidence 38899999999865
No 93
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=84 Score=24.38 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=26.3
Q ss_pred CCCCCEEE-EEEEC-----CCCCCCCCCeEEEecccccccccCCCe
Q 033405 44 PYAGGVFL-VSIHF-----PPDYPFKPPKVAFRTKVFHPNINSNGS 83 (120)
Q Consensus 44 py~gg~f~-~~l~f-----p~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (120)
-|+.|.+. +...| -++=+...|.|.|.-.+|||||-..-+
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccc
Confidence 46555433 33333 245556779999999999999975433
No 94
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=20.23 E-value=1.1e+02 Score=17.13 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEee
Q 033405 3 SKRILKELKDLQKDPPTSCSAGP 25 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~ 25 (120)
..||..|++.|++....-+++.|
T Consensus 33 y~~ls~~~q~I~r~GGkIvsItp 55 (56)
T PF01383_consen 33 YSQLSQEMQRINRQGGKIVSITP 55 (56)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEE
T ss_pred HHHhHHHHHHHHHCCCEEEEEEe
Confidence 36899999999998776666654
No 95
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=20.17 E-value=99 Score=17.49 Aligned_cols=19 Identities=0% Similarity=-0.162 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHhhchhhh
Q 033405 98 TISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 98 ~i~~vl~~i~~ll~~p~~~ 116 (120)
++.++|..|+.....|+.+
T Consensus 2 sv~dLLr~irNi~~hp~e~ 20 (58)
T smart00580 2 SVRDLLRALRNILHHPREE 20 (58)
T ss_pred cHHHHHHHHHHHhhCcchh
Confidence 5788999999999998876
Done!