Query 033405
Match_columns 120
No_of_seqs 164 out of 1068
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 2E-46 6.7E-51 249.4 13.5 117 2-118 7-124 (125)
2 2h2y_A Ubiquitin-conjugating e 100.0 3.3E-45 1.1E-49 246.6 14.2 114 2-115 21-135 (136)
3 4gpr_A Ubiquitin-conjugating e 100.0 3.2E-45 1.1E-49 250.4 13.7 116 1-116 4-119 (151)
4 2ayv_A Ubiquitin-conjugating e 100.0 6.7E-45 2.3E-49 252.3 14.5 115 1-115 21-135 (166)
5 1z2u_A Ubiquitin-conjugating e 100.0 4.3E-45 1.5E-49 249.5 12.8 115 1-115 4-118 (150)
6 2r0j_A Ubiquitin carrier prote 100.0 5.1E-45 1.8E-49 248.9 12.7 114 2-115 2-115 (149)
7 2c4o_A Ubiquitin-conjugating e 100.0 9.2E-45 3.1E-49 251.4 13.9 115 1-115 19-133 (165)
8 1fxt_A Ubiquitin-conjugating e 100.0 3.9E-45 1.3E-49 249.5 11.4 116 1-116 1-118 (149)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.1E-44 3.7E-49 251.9 13.4 114 2-115 5-118 (169)
10 2c2v_B Ubiquitin-conjugating e 100.0 6.7E-45 2.3E-49 249.6 12.0 114 2-115 6-119 (154)
11 2e2c_A Ubiquitin conjugating e 100.0 1.9E-44 6.5E-49 247.8 13.8 116 1-116 9-124 (156)
12 1jat_A Ubiquitin-conjugating e 100.0 1.3E-44 4.4E-49 248.4 12.5 116 1-116 5-120 (155)
13 1zdn_A Ubiquitin-conjugating e 100.0 2.3E-44 7.7E-49 247.9 13.1 115 2-116 14-128 (158)
14 2aak_A UBC1, ubiquitin conjuga 100.0 2.9E-44 9.8E-49 245.9 13.4 114 2-115 5-118 (152)
15 3h8k_A Ubiquitin-conjugating e 100.0 4.6E-44 1.6E-48 247.6 14.4 116 1-116 3-132 (164)
16 2ucz_A UBC7, ubiquitin conjuga 100.0 6.5E-44 2.2E-48 247.0 14.7 115 2-116 5-133 (165)
17 1yh2_A HSPC150 protein similar 100.0 7.5E-44 2.6E-48 247.6 14.4 114 2-115 5-122 (169)
18 1i7k_A Ubiquitin-conjugating e 100.0 3.7E-44 1.3E-48 251.0 12.5 116 1-116 30-145 (179)
19 3rcz_B SUMO-conjugating enzyme 100.0 8.8E-44 3E-48 246.0 13.0 115 2-116 11-132 (163)
20 2awf_A Ubiquitin-conjugating e 100.0 1.8E-43 6.3E-48 246.3 14.4 116 1-116 17-146 (172)
21 3rz3_A Ubiquitin-conjugating e 100.0 2.3E-43 7.7E-48 247.9 14.3 114 2-115 8-135 (183)
22 2a7l_A Hypothetical ubiquitin- 100.0 1.1E-43 3.8E-48 239.1 12.1 109 3-111 24-136 (136)
23 3bzh_A Ubiquitin-conjugating e 100.0 2.9E-43 9.9E-48 249.2 14.4 114 2-115 49-162 (194)
24 1yrv_A Ubiquitin-conjugating l 100.0 9.5E-44 3.3E-48 247.1 11.3 115 2-116 24-141 (169)
25 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.4E-43 1.2E-47 248.6 13.3 115 1-115 32-160 (193)
26 2bep_A Ubiquitin-conjugating e 100.0 4.6E-43 1.6E-47 241.5 13.6 115 2-116 9-127 (159)
27 2pwq_A Ubiquitin conjugating e 100.0 1.9E-43 6.6E-48 253.6 11.8 114 2-115 24-138 (216)
28 2gjd_A Ubiquitin-conjugating e 100.0 3E-43 1E-47 242.0 11.9 115 2-116 5-126 (157)
29 1wzv_A Ubiquitin-conjugating e 100.0 6.1E-43 2.1E-47 240.0 12.4 114 1-115 4-119 (155)
30 3k9o_A Ubiquitin-conjugating e 100.0 9.9E-43 3.4E-47 247.8 13.8 115 1-115 5-123 (201)
31 2grr_A Ubiquitin-conjugating e 100.0 1.4E-42 4.7E-47 239.6 12.5 115 2-116 8-129 (161)
32 1y8x_A Ubiquitin-conjugating e 100.0 4.1E-42 1.4E-46 237.0 12.7 112 2-116 7-119 (160)
33 1tte_A Ubiquitin-conjugating e 100.0 5.1E-43 1.8E-47 251.2 8.2 115 1-115 2-118 (215)
34 2a4d_A Ubiquitin-conjugating e 100.0 1.1E-41 3.8E-46 234.7 13.7 114 2-115 26-147 (160)
35 2q0v_A Ubiquitin-conjugating e 100.0 8.8E-42 3E-46 234.4 13.1 115 2-117 22-143 (156)
36 1jat_B Ubiquitin-conjugating e 100.0 1.5E-41 5.3E-46 229.1 12.7 115 2-117 7-128 (138)
37 1c4z_D UBCH7, ubiquitin conjug 100.0 5.4E-42 1.9E-46 235.1 10.4 115 1-116 2-118 (154)
38 2nvu_C NEDD8-conjugating enzym 100.0 1.1E-41 3.8E-46 238.8 11.9 112 2-116 27-139 (180)
39 3e46_A Ubiquitin-conjugating e 100.0 1.9E-41 6.5E-46 248.0 13.7 114 2-115 58-175 (253)
40 2y9m_A Ubiquitin-conjugating e 100.0 5E-41 1.7E-45 234.0 13.4 115 2-116 7-136 (172)
41 3fn1_B NEDD8-conjugating enzym 100.0 3.5E-41 1.2E-45 233.7 12.4 113 2-115 15-135 (167)
42 2onu_A Ubiquitin-conjugating e 100.0 5.1E-42 1.7E-46 234.8 6.4 111 2-115 3-115 (152)
43 2hlw_A Ubiquitin-conjugating e 100.0 4.2E-41 1.4E-45 233.9 11.0 113 2-114 36-156 (170)
44 4ddg_A Ubiquitin-conjugating e 100.0 8.8E-41 3E-45 258.2 12.7 116 1-116 3-118 (399)
45 2z5d_A Ubiquitin-conjugating e 100.0 4.4E-41 1.5E-45 235.3 8.1 110 2-115 26-137 (179)
46 2f4w_A Ubiquitin-conjugating e 100.0 4.2E-40 1.4E-44 232.0 13.0 113 1-115 14-129 (187)
47 3o2u_A NEDD8-conjugating enzym 100.0 3.7E-40 1.3E-44 232.7 12.1 112 2-116 30-148 (190)
48 1zuo_A Hypothetical protein LO 100.0 1E-40 3.5E-45 234.8 8.4 115 2-116 28-159 (186)
49 1yf9_A Ubiquitin carrier prote 100.0 3.4E-40 1.2E-44 229.5 9.1 111 2-116 13-125 (171)
50 4ds2_A Ubiquitin-conjugating e 100.0 6.2E-40 2.1E-44 227.5 8.9 111 2-112 9-134 (167)
51 3ceg_A Baculoviral IAP repeat- 100.0 9.3E-38 3.2E-42 234.6 13.7 113 2-114 77-208 (323)
52 2z6o_A UFM1-conjugating enzyme 100.0 8.7E-31 3E-35 179.3 2.3 96 3-104 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.9 5.4E-22 1.8E-26 136.3 8.4 113 4-117 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 3.6E-22 1.2E-26 134.2 1.1 92 3-103 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 2.6E-16 9E-21 106.4 6.9 80 27-112 50-138 (146)
56 2ebm_A RWD domain-containing p 97.3 0.0033 1.1E-07 40.5 9.6 66 4-71 13-78 (128)
57 2day_A Ring finger protein 25; 97.0 0.01 3.5E-07 38.1 9.6 68 5-72 12-83 (128)
58 2yz0_A Serine/threonine-protei 96.8 0.021 7.1E-07 37.2 9.7 67 5-72 14-86 (138)
59 3zqs_A E3 ubiquitin-protein li 96.3 0.071 2.4E-06 36.9 10.3 84 4-112 4-88 (186)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.9 0.15 5.2E-06 32.8 10.2 67 4-71 13-86 (137)
61 2ebk_A RWD domain-containing p 95.1 0.062 2.1E-06 34.4 6.0 66 5-71 11-79 (128)
62 2daw_A RWD domain containing p 92.7 0.11 3.8E-06 34.6 3.6 24 49-72 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 92.5 0.096 3.3E-06 34.6 3.1 24 49-72 74-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 73.0 2.8 9.7E-05 18.9 2.0 19 3-21 7-25 (26)
65 2bum_A Protocatechuate 3,4-dio 42.9 26 0.0009 24.3 3.7 25 46-70 109-138 (209)
66 3zqs_A E3 ubiquitin-protein li 32.4 71 0.0024 21.7 4.4 54 48-106 124-179 (186)
67 1b33_N Phycobilisome 7.8 KD li 31.3 45 0.0016 18.9 2.8 27 3-29 33-59 (67)
68 3pft_A Flavin reductase; desul 29.4 35 0.0012 22.1 2.4 31 62-92 42-75 (157)
69 3rls_A YAF9, protein AF-9 homo 25.3 1.6E+02 0.0054 19.8 6.0 42 28-71 30-71 (175)
70 2bum_B Protocatechuate 3,4-dio 25.1 45 0.0015 23.6 2.5 25 46-70 134-165 (241)
71 2xsu_A Catechol 1,2 dioxygenas 25.1 43 0.0015 24.7 2.5 25 46-70 187-229 (312)
72 3t63_M 3,4-PCD, protocatechuat 24.9 46 0.0016 23.6 2.5 24 47-70 134-164 (238)
73 3kxt_A Chromatin protein CREN7 24.7 46 0.0016 18.1 1.9 11 52-62 46-56 (56)
74 3qrl_A Transcription initiatio 24.2 1.5E+02 0.0052 19.2 5.6 42 30-73 32-76 (140)
75 3t63_A 3,4-PCD, protocatechuat 23.8 56 0.0019 22.4 2.7 23 48-70 102-129 (200)
76 2ccv_A Helix pomatia agglutini 23.6 1.3E+02 0.0043 18.1 4.2 23 47-70 28-50 (101)
77 3g9r_A Fusion complex of HIV-1 23.5 55 0.0019 16.5 1.9 13 3-15 30-42 (42)
78 2azq_A Catechol 1,2-dioxygenas 23.2 49 0.0017 24.4 2.4 24 47-70 184-225 (311)
79 1tmx_A Hydroxyquinol 1,2-dioxy 23.1 50 0.0017 24.1 2.5 25 46-70 183-225 (293)
80 2c5k_P Vacuolar protein sortin 22.9 45 0.0015 15.3 1.4 12 4-15 13-24 (26)
81 3n9t_A PNPC; phospholipid bind 21.6 56 0.0019 23.8 2.5 25 46-70 180-222 (290)
82 2boy_A 3-chlorocatechol 1,2-di 21.5 57 0.002 23.3 2.5 24 47-70 154-195 (254)
83 1dmh_A 1,2-CTD, catechol 1,2-d 20.5 61 0.0021 23.9 2.5 24 47-70 187-228 (311)
84 1m46_B IQ4, IQ4 motif from MYO 20.0 71 0.0024 14.2 1.7 11 3-13 10-20 (26)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=2e-46 Score=249.35 Aligned_cols=117 Identities=33% Similarity=0.584 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccc-ccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~~ 80 (120)
|.+||++|++++++++++++++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.
T Consensus 7 a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~ 86 (125)
T 2fo3_A 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86 (125)
T ss_dssp --CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCLKT 118 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~~ 118 (120)
+|+||+++|.++|+|++++++||.+|++||++|+..++
T Consensus 87 ~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~~ 124 (125)
T 2fo3_A 87 NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKKL 124 (125)
T ss_dssp TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-------
T ss_pred CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccccC
Confidence 99999999999999999999999999999999998764
No 2
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.3e-45 Score=246.57 Aligned_cols=114 Identities=33% Similarity=0.607 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccc-ccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~~ 80 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.
T Consensus 21 ~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~ 100 (136)
T 2h2y_A 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100 (136)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|+||+++|.++|+|++++++||.+|++||++|+.
T Consensus 101 ~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 101 NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999974
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.2e-45 Score=250.43 Aligned_cols=116 Identities=60% Similarity=1.114 Sum_probs=112.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 4 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 83 (151)
T 4gpr_A 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83 (151)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+||+++|.++|+|+++|++||.+|++||.+||..
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~ 119 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPS 119 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTT
T ss_pred CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999753
No 4
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.7e-45 Score=252.26 Aligned_cols=115 Identities=70% Similarity=1.190 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||++|++++++++++++++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 21 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 100 (166)
T 2ayv_A 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS 100 (166)
T ss_dssp THHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~ 135 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLSISSLLTDPNP 135 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999974
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=4.3e-45 Score=249.53 Aligned_cols=115 Identities=70% Similarity=1.255 Sum_probs=112.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (150)
T 1z2u_A 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|+||+++|.++|+|++++.+||.+|++||.+|+.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~ 118 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 118 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999874
No 6
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=5.1e-45 Score=248.93 Aligned_cols=114 Identities=41% Similarity=0.792 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|+||+++|.++|+|++++++||.+|++||.+|+.
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEP 115 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCT
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999975
No 7
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=9.2e-45 Score=251.37 Aligned_cols=115 Identities=70% Similarity=1.240 Sum_probs=112.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 19 ~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~ 98 (165)
T 2c4o_A 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98 (165)
T ss_dssp HHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|+||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~ 133 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 133 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999875
No 8
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=3.9e-45 Score=249.49 Aligned_cols=116 Identities=45% Similarity=0.839 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
||.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 1 ~~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CCHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 6899999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred C-CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 80 S-NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 80 ~-~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
. +|.||+++|.++|+|++++++||.+|++||.+|+..
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~ 118 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPN 118 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSS
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 8 999999999999999999999999999999999853
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=251.86 Aligned_cols=114 Identities=36% Similarity=0.816 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~ 84 (169)
T 1ayz_A 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYAN 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|+||+++|+++|+|+++|.+||.+|++||.+|+.
T Consensus 85 G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~ 118 (169)
T 1ayz_A 85 GEICLDILQNRWTPTYDVASILTSIQSLFNDPNP 118 (169)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCC
T ss_pred CeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999874
No 10
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.7e-45 Score=249.57 Aligned_cols=114 Identities=38% Similarity=0.725 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 85 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|+||+++|+++|+|+++|++||.+|++||.+|+.
T Consensus 86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~ 119 (154)
T 2c2v_B 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 119 (154)
T ss_dssp CBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCC
T ss_pred CeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999874
No 11
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-44 Score=247.76 Aligned_cols=116 Identities=34% Similarity=0.670 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
.|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 9 ~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 88 (156)
T 2e2c_A 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88 (156)
T ss_dssp CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|.++|+|++++.+||.+|++||.+|+..
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~ 124 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNA 124 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCS
T ss_pred CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999753
No 12
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.3e-44 Score=248.39 Aligned_cols=116 Identities=41% Similarity=0.715 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|+++|+|++++.+||.+|++||.+|+..
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~ 120 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPN 120 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999753
No 13
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-44 Score=247.86 Aligned_cols=115 Identities=36% Similarity=0.643 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 93 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN 93 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|+||+++|.++|+|++++++||.+|++||.+|+..
T Consensus 94 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~ 128 (158)
T 1zdn_A 94 GEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPE 128 (158)
T ss_dssp SBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGG
T ss_pred CEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999854
No 14
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.9e-44 Score=245.92 Aligned_cols=114 Identities=44% Similarity=0.901 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 5 a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 84 (152)
T 2aak_A 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|.||+++|.++|+|++++.+||.+|++||.+|+.
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~ 118 (152)
T 2aak_A 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP 118 (152)
T ss_dssp SBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCT
T ss_pred CEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999975
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=4.6e-44 Score=247.56 Aligned_cols=116 Identities=41% Similarity=0.782 Sum_probs=111.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCC-CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
.|.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~ 82 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC
Confidence 3789999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeecCCC-------------CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 80 SNGSICLDILK-------------EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.+|+||+++|. ++|+|+++|++||.+|++||.+|+..
T Consensus 83 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~ 132 (164)
T 3h8k_A 83 PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDE 132 (164)
T ss_dssp TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCC
Confidence 99999999997 78999999999999999999999853
No 16
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.5e-44 Score=247.05 Aligned_cols=115 Identities=44% Similarity=0.872 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~ 84 (165)
T 2ucz_A 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84 (165)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC
Confidence 78999999999999999999999876 69999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCC-------------CCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDIL-------------KEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l-------------~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+||+++| .++|+|+++|++||.+|++||.+|+..
T Consensus 85 ~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~ 133 (165)
T 2ucz_A 85 NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIE 133 (165)
T ss_dssp TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGG
T ss_pred CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCC
Confidence 999999999 688999999999999999999999854
No 17
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.5e-44 Score=247.63 Aligned_cols=114 Identities=35% Similarity=0.693 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 5 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~ 84 (169)
T 1yh2_A 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCC----CCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILK----EQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~----~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|.||+|+|. ++|+|+++|.+||.+|++||.+|+.
T Consensus 85 G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~ 122 (169)
T 1yh2_A 85 GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 122 (169)
T ss_dssp CBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCT
T ss_pred CeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 999999998 8999999999999999999999975
No 18
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-44 Score=251.05 Aligned_cols=116 Identities=31% Similarity=0.559 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
.|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 30 ~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 109 (179)
T 1i7k_A 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109 (179)
T ss_dssp CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+||+++|.++|+|+++|.+||.+|++||.+|+..
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~ 145 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNID 145 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999854
No 19
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=8.8e-44 Score=246.01 Aligned_cols=115 Identities=32% Similarity=0.716 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCC-----CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccc
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hp 76 (120)
|++||+||++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 789999999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEeecCCCCC--CCCcCcHHHHHHHHHHHhhchhhh
Q 033405 77 NINSNGSICLDILKEQ--WSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 77 nv~~~G~iCl~~l~~~--W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
||+.+|+||+++|.+. |+|+++|++||.+|++||.+|+..
T Consensus 91 nV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~ 132 (163)
T 3rcz_B 91 NVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIA 132 (163)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCC
Confidence 9999999999999754 999999999999999999999864
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.8e-43 Score=246.27 Aligned_cols=116 Identities=37% Similarity=0.778 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecC-CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
.|.+||+||+++|++++++|+++.+.+ +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 17 ~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~ 96 (172)
T 2awf_A 17 RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96 (172)
T ss_dssp TTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC
Confidence 378999999999999999999999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeecCCC-------------CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 80 SNGSICLDILK-------------EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.+|+||+++|. ++|+|+++|++||.+|++||.+|+..
T Consensus 97 ~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~ 146 (172)
T 2awf_A 97 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGD 146 (172)
T ss_dssp TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC---
T ss_pred CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCC
Confidence 99999999996 68999999999999999999999753
No 21
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.3e-43 Score=247.94 Aligned_cols=114 Identities=35% Similarity=0.739 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.|||++|++++++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 8 a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 87 (183)
T 3rz3_A 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87 (183)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC
Confidence 68999999999999999999998 67789999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCC-------------CCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILK-------------EQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|+||+++|. ++|+|+++|++||.+|++||.+||.
T Consensus 88 ~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~ 135 (183)
T 3rz3_A 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNT 135 (183)
T ss_dssp TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 9999999996 7899999999999999999999975
No 22
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-43 Score=239.06 Aligned_cols=109 Identities=37% Similarity=0.726 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEe--ecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccc--cccc
Q 033405 3 SKRILKELKDLQKDPPTSCSAG--PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVF--HPNI 78 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~--~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~--Hpnv 78 (120)
.+||+||++++++++++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 3999999999999999999865 88899999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCeEeecCCCCCCCCcCcHHHHHHHHHHHhh
Q 033405 79 NSNGSICLDILKEQWSPALTISKAFTIVSEVGC 111 (120)
Q Consensus 79 ~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~ 111 (120)
+.+|+||+++|+++|+|++++++||.+|++||+
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999999999985
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=2.9e-43 Score=249.25 Aligned_cols=114 Identities=55% Similarity=1.058 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (120)
|.+||++|+++|++++++++++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.+
T Consensus 49 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~ 128 (194)
T 3bzh_A 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ 128 (194)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 82 GSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus 129 G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp 162 (194)
T 3bzh_A 129 GVICLDILKDNWSPALTISKVLLSICSLLTDCNP 162 (194)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CceechhhhccCCCcCcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999874
No 24
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-44 Score=247.06 Aligned_cols=115 Identities=32% Similarity=0.595 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccc-cC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI-NS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv-~~ 80 (120)
|.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||| +.
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~ 103 (169)
T 1yrv_A 24 AYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103 (169)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred CCeEeecCCC--CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILK--EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~--~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|+||+++|. ++|+|+++|++||.+|++||.+|+..
T Consensus 104 ~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~ 141 (169)
T 1yrv_A 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLE 141 (169)
T ss_dssp TCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTT
T ss_pred CCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCC
Confidence 9999999998 89999999999999999999999753
No 25
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-43 Score=248.64 Aligned_cols=115 Identities=45% Similarity=0.821 Sum_probs=108.4
Q ss_pred ChHHHHHHHHHHhhcCCC-------------CCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 033405 1 MASKRILKELKDLQKDPP-------------TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKV 67 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~-------------~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v 67 (120)
+|.+||+||+++++++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 478999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccc-CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 68 AFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 68 ~f~t~i~Hpnv~-~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|.|+||||||+ .+|.||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp 160 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVP 160 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCT
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 999999999999 599999999999999999999999999999999975
No 26
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.6e-43 Score=241.53 Aligned_cols=115 Identities=39% Similarity=0.738 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhcC---CCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccc
Q 033405 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (120)
Q Consensus 2 a~~RL~~E~~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv 78 (120)
|.+||+||+++++++ ++.++++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 9 a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 88 (159)
T 2bep_A 9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 88 (159)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCC
Confidence 689999999999985 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 79 N-SNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 79 ~-~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+ .+|.||+++|.++|+|++++.+||.+|++||.+|+..
T Consensus 89 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~ 127 (159)
T 2bep_A 89 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127 (159)
T ss_dssp CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 9 5999999999999999999999999999999999753
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.9e-43 Score=253.63 Aligned_cols=114 Identities=41% Similarity=0.782 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc-C
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 80 (120)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp 138 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLSIQALLSDPQP 138 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999975
No 28
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3e-43 Score=242.01 Aligned_cols=115 Identities=37% Similarity=0.680 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecC-----CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccc
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hp 76 (120)
|.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 5 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 84 (157)
T 2gjd_A 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHP 84 (157)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccC
Confidence 68999999999999999999999875 3899999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEeecCCCC--CCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 77 NINSNGSICLDILKE--QWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 77 nv~~~G~iCl~~l~~--~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
||+.+|.||+++|.+ +|+|+++|++||.+|++||.+|+..
T Consensus 85 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~ 126 (157)
T 2gjd_A 85 NVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126 (157)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCC
Confidence 999999999999977 7999999999999999999999764
No 29
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=6.1e-43 Score=239.99 Aligned_cols=114 Identities=39% Similarity=0.783 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEE-eecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSA-GPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~-~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
+|.+||++|++++++++++|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 47899999999999999999999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCeEeecCC-CCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 80 SNGSICLDIL-KEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 80 ~~G~iCl~~l-~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
.+|.||+++| .++|+|++++.+||.+|++||.+|+.
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~ 119 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNI 119 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCS
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999999 89999999999999999999999975
No 30
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=9.9e-43 Score=247.80 Aligned_cols=115 Identities=39% Similarity=0.757 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHhhcC---CCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 1 MASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
+|.+||+||+++++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 84 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence 4789999999999987 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 78 IN-SNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 78 v~-~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
|+ .+|.||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus 85 v~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p 123 (201)
T 3k9o_A 85 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 123 (201)
T ss_dssp BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 99 599999999999999999999999999999999974
No 31
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.4e-42 Score=239.58 Aligned_cols=115 Identities=35% Similarity=0.679 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecC-----CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccc
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hp 76 (120)
|.+||++|++++++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 87 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccC
Confidence 67999999999999999999998864 5899999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEeecCCCC--CCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 77 NINSNGSICLDILKE--QWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 77 nv~~~G~iCl~~l~~--~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
||+.+|.||+++|.+ +|+|++++.+||.+|++||.+|+..
T Consensus 88 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~ 129 (161)
T 2grr_A 88 NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129 (161)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCC
Confidence 999999999999975 7999999999999999999999854
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-42 Score=237.02 Aligned_cols=112 Identities=33% Similarity=0.626 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.+||++|++++ ++++++++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 7 ~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (160)
T 1y8x_A 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83 (160)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC
Confidence 789999999999 467899998 7889999999998 999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|.++|+|++++++||.+|++||.+|+..
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~ 119 (160)
T 1y8x_A 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPE 119 (160)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999854
No 33
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=5.1e-43 Score=251.25 Aligned_cols=115 Identities=43% Similarity=0.842 Sum_probs=110.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCC-cceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~-~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
+|.+||++|++++++++++|+++.+.++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 47899999999999999999999998774 66999999999999999999999999999999999999999999999999
Q ss_pred C-CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 80 S-NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 80 ~-~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
. +|.||+++|+++|+|++||.+||.+|++||.+|+.
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp 118 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEP 118 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 8 99999999999999999999999999999999975
No 34
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.1e-41 Score=234.66 Aligned_cols=114 Identities=28% Similarity=0.459 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhhcCCCCC-eEEee-cCCC--cceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 2 ASKRILKELKDLQKDPPTS-CSAGP-VAED--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
|.+||+||+++++++++++ +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 5789999999999998888 77776 3454 899999999999999999999999999999999999999999999999
Q ss_pred cc-CCCeEeecCCC--CCCCCcCcHHHHHHHHHHHhh-chhh
Q 033405 78 IN-SNGSICLDILK--EQWSPALTISKAFTIVSEVGC-IFLC 115 (120)
Q Consensus 78 v~-~~G~iCl~~l~--~~W~p~~~i~~vl~~i~~ll~-~p~~ 115 (120)
|+ .+|+||+++|. ++|+|+++|++||.+|++||. +||.
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~ 147 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 147 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTT
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCC
Confidence 99 69999999997 899999999999999999996 4654
No 35
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=8.8e-42 Score=234.43 Aligned_cols=115 Identities=27% Similarity=0.455 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhhcC-CCCCeEEeecC-C--CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 2 a~~RL~~E~~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
|.+||++|+++++++ +++++++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 22 ~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 101 (156)
T 2q0v_A 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSC 101 (156)
T ss_dssp HHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCC
Confidence 679999999999998 78899998854 3 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeE---eecCCCCCCCCcCcHHHHHHHHHHHhhchhhhh
Q 033405 78 INSNGSI---CLDILKEQWSPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 78 v~~~G~i---Cl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
|+.+|+| |+++|. +|+|++++++||.+|++||.+|+...
T Consensus 102 V~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~ 143 (156)
T 2q0v_A 102 VDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKR 143 (156)
T ss_dssp BCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTT
T ss_pred CccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCC
Confidence 9999999 888886 59999999999999999999998764
No 36
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.5e-41 Score=229.12 Aligned_cols=115 Identities=32% Similarity=0.566 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhhcC-CCCCeEEeecC-C--CcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 2 a~~RL~~E~~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
+.+||+||+++++++ +++++++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 86 (138)
T 1jat_B 7 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC 86 (138)
T ss_dssp HHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCC
Confidence 568999999999998 78899998854 3 4999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CeE--eecCCCCCCCCcCcHHHHHHHHHHHhhchhhhh
Q 033405 78 INSN-GSI--CLDILKEQWSPALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 78 v~~~-G~i--Cl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
|+.+ |.| |++++. +|+|++++++||.+|++||.+|+...
T Consensus 87 v~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~ 128 (138)
T 1jat_B 87 VNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKK 128 (138)
T ss_dssp BCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHT
T ss_pred EeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCC
Confidence 9985 999 899885 89999999999999999999998754
No 37
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.4e-42 Score=235.05 Aligned_cols=115 Identities=34% Similarity=0.724 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEee-cCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGP-VAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (120)
+|.+||++|++++++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 4779999999999999999998554 6779999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEeecCCC-CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 80 SNGSICLDILK-EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 80 ~~G~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.+|+||+++|. ++|+|++++.+||.+|++||.+|+..
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~ 118 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 118 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Confidence 99999999996 88999999999999999999999753
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-41 Score=238.76 Aligned_cols=112 Identities=32% Similarity=0.593 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEe-ecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.+||++|++++ ++++++++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 27 ~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~ 103 (180)
T 2nvu_C 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103 (180)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC
Confidence 689999999999 467899998 7889999999998 999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|.++|+|++++++||.+|++||.+|+..
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~ 139 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPE 139 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999864
No 39
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.9e-41 Score=248.05 Aligned_cols=114 Identities=39% Similarity=0.756 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhcC---CCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccc
Q 033405 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (120)
Q Consensus 2 a~~RL~~E~~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv 78 (120)
|.+||++|+++|+++ ++.++++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 58 a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 137 (253)
T 3e46_A 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 137 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCc
Confidence 789999999999987 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 79 N-SNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 79 ~-~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+ .+|.||+++|.++|+|+++|++||.+|++||.+||.
T Consensus 138 ~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp 175 (253)
T 3e46_A 138 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 175 (253)
T ss_dssp CTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred cCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 9 599999999999999999999999999999999974
No 40
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=5e-41 Score=233.98 Aligned_cols=115 Identities=36% Similarity=0.677 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhc-C-C------CC---CeEEee-cCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 033405 2 ASKRILKELKDLQK-D-P------PT---SCSAGP-VAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAF 69 (120)
Q Consensus 2 a~~RL~~E~~~l~~-~-~------~~---~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f 69 (120)
|.+||++|++++++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 86 (172)
T 2y9m_A 7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence 67999999999998 4 3 33 466777 77899999999999999999999999999999999999999999
Q ss_pred ec-cccccccc-CCCeEeecCCC-CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 70 RT-KVFHPNIN-SNGSICLDILK-EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 70 ~t-~i~Hpnv~-~~G~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
.| ++|||||+ .+|+||+++|. ++|+|++++++||.+|++||.+|+..
T Consensus 87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~ 136 (172)
T 2y9m_A 87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCD 136 (172)
T ss_dssp CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCC
Confidence 99 99999996 79999999998 89999999999999999999999753
No 41
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=3.5e-41 Score=233.74 Aligned_cols=113 Identities=30% Similarity=0.584 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeec-CCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
|.+||++|++++++++++|+++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 15 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 93 (167)
T 3fn1_B 15 RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93 (167)
T ss_dssp HHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC
Confidence 6799999999999999999999854 57899999998 899999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCC------CCCCcCcHHHHHHHHHHHhhc-hhh
Q 033405 81 NGSICLDILKE------QWSPALTISKAFTIVSEVGCI-FLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~------~W~p~~~i~~vl~~i~~ll~~-p~~ 115 (120)
+|+||+++|.. +|+|+++|++||.+|++||.+ ||.
T Consensus 94 ~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~ 135 (167)
T 3fn1_B 94 TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135 (167)
T ss_dssp TCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCS
T ss_pred CCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCC
Confidence 99999999975 799999999999999999999 453
No 42
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=5.1e-42 Score=234.82 Aligned_cols=111 Identities=24% Similarity=0.588 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc-C
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 80 (120)
|.+||+||++++++. |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 679999999999874 788889999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHH-HHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTI-VSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~-i~~ll~~p~~ 115 (120)
+|.||+++|.++|+|++++.+||.+ |++||.+|+.
T Consensus 80 ~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~ 115 (152)
T 2onu_A 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNP 115 (152)
T ss_dssp TCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCC
T ss_pred CCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999 7899999875
No 43
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=4.2e-41 Score=233.88 Aligned_cols=113 Identities=28% Similarity=0.467 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHhhcCCCCC-eEEee-cCCC--cceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccc
Q 033405 2 ASKRILKELKDLQKDPPTS-CSAGP-VAED--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (120)
|.+||++|+++++++++++ +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 6799999999999998888 67776 4454 999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCeEeecCCC--CCCCCcCcHHHHHHHHHHHhhc-hh
Q 033405 78 IN-SNGSICLDILK--EQWSPALTISKAFTIVSEVGCI-FL 114 (120)
Q Consensus 78 v~-~~G~iCl~~l~--~~W~p~~~i~~vl~~i~~ll~~-p~ 114 (120)
|+ .+|.||+++|. ++|+|+++|++||.+|++||.+ ||
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn 156 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKEN 156 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTT
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCC
Confidence 99 79999999997 8999999999999999999986 54
No 44
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=8.8e-41 Score=258.18 Aligned_cols=116 Identities=69% Similarity=1.185 Sum_probs=113.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
+|.|||++|++++++++++|+++.|.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
+|.||+++|+++|+|++++++||.+|++||.+||..
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~ 118 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 118 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999853
No 45
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=235.35 Aligned_cols=110 Identities=26% Similarity=0.653 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC-
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~- 80 (120)
|.+||++|++++++ +++++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 26 a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~ 101 (179)
T 2z5d_A 26 GKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEA 101 (179)
T ss_dssp HHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCC
Confidence 67999999999985 47888876 67999999999999999999999999999999999999999999999999998
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHH-HHHHhhchhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTI-VSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~-i~~ll~~p~~ 115 (120)
+|.||+++|.++|+|++++++||.+ |++||.+|+.
T Consensus 102 ~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~ 137 (179)
T 2z5d_A 102 SGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNP 137 (179)
T ss_dssp TCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCC
T ss_pred CCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999 9999999975
No 46
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-40 Score=231.95 Aligned_cols=113 Identities=27% Similarity=0.587 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccC
Q 033405 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (120)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (120)
.|.+||++|+++|++++++++.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ ||||+.
T Consensus 14 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~ 91 (187)
T 2f4w_A 14 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC 91 (187)
T ss_dssp CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc
Confidence 378999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCeEeecCC---CCCCCCcCcHHHHHHHHHHHhhchhh
Q 033405 81 NGSICLDIL---KEQWSPALTISKAFTIVSEVGCIFLC 115 (120)
Q Consensus 81 ~G~iCl~~l---~~~W~p~~~i~~vl~~i~~ll~~p~~ 115 (120)
+|+||+++| .++|+|+++|.+||.+|++||.+|+-
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHHHHHHHHSCCC
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 999999999 68999999999999999999999874
No 47
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.7e-40 Score=232.70 Aligned_cols=112 Identities=31% Similarity=0.538 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEe----ecCCCcc---eeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccc
Q 033405 2 ASKRILKELKDLQKDPPTSCSAG----PVAEDMF---HWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVF 74 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~----~~~~~~~---~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~ 74 (120)
|.+||++|+++++ .++++++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 30 a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 30 ARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp HHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred HHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 7899999999998 67899988 8889999 9999997 88899999999999999999999999999999999
Q ss_pred cccccCCCeEeecCCCCCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 75 HPNINSNGSICLDILKEQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 75 Hpnv~~~G~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
||||+.+|.||+++|.++|+|+++|++||.+|++||.+||..
T Consensus 107 HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~ 148 (190)
T 3o2u_A 107 HPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPN 148 (190)
T ss_dssp CTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTT
T ss_pred cCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999853
No 48
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1e-40 Score=234.84 Aligned_cols=115 Identities=24% Similarity=0.522 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhcCC---CCCeEEeecCCCcceeEEEEeCC-CCCCCCC-----------CEEEEEEECCCCCCCCCCe
Q 033405 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGP-PDSPYAG-----------GVFLVSIHFPPDYPFKPPK 66 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~l~fp~~YP~~pP~ 66 (120)
|.+||++|++++++++ +.++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 7899999999999987 68899999999999999999997 9999998 8999999999999999999
Q ss_pred EEEecccccc-cccCCCeEeecCCC-CCCCCcCcHHHHHHHHHHHhhchhhh
Q 033405 67 VAFRTKVFHP-NINSNGSICLDILK-EQWSPALTISKAFTIVSEVGCIFLCL 116 (120)
Q Consensus 67 v~f~t~i~Hp-nv~~~G~iCl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~ 116 (120)
|+|.+++||| ||+.+|+||+++|. ++|+|+++|++||.+|++||.+|+.+
T Consensus 108 V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~ 159 (186)
T 1zuo_A 108 VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR 159 (186)
T ss_dssp EEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred EEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence 9999999999 69999999999996 78999999999999999999999764
No 49
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-40 Score=229.53 Aligned_cols=111 Identities=23% Similarity=0.614 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEeccccccccc-C
Q 033405 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 80 (120)
|.+||++|++++++++. ++ +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 13 ~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~ 88 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88 (171)
T ss_dssp CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCccc
Confidence 46999999999999874 33 3578999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEeecCCCCCCCCcCcHHHHHHHH-HHHhhchhhh
Q 033405 81 NGSICLDILKEQWSPALTISKAFTIV-SEVGCIFLCL 116 (120)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~vl~~i-~~ll~~p~~~ 116 (120)
+|.||+++|.++|+|++++++||.+| ++||++|+..
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~ 125 (171)
T 1yf9_A 89 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 125 (171)
T ss_dssp TCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSS
T ss_pred CCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999997 7999998753
No 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.2e-40 Score=227.50 Aligned_cols=111 Identities=29% Similarity=0.619 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHhhcCC------------CCCeEEeecCCCcceeEEEEeCCCCCCCC--CCEEEEEEECCCCCCCCCCeE
Q 033405 2 ASKRILKELKDLQKDP------------PTSCSAGPVAEDMFHWQATIMGPPDSPYA--GGVFLVSIHFPPDYPFKPPKV 67 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~------------~~~i~~~~~~~~~~~w~~~i~gp~~tpy~--gg~f~~~l~fp~~YP~~pP~v 67 (120)
|.|||++|++++++++ ..++.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++||+|
T Consensus 9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v 88 (167)
T 4ds2_A 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEE
Confidence 6799999999999976 67899999999999999999999999999 999999999999999999999
Q ss_pred EEecccccccccCCCeEeecCCCCCCCCcCcHHHHH-HHHHHHhhc
Q 033405 68 AFRTKVFHPNINSNGSICLDILKEQWSPALTISKAF-TIVSEVGCI 112 (120)
Q Consensus 68 ~f~t~i~Hpnv~~~G~iCl~~l~~~W~p~~~i~~vl-~~i~~ll~~ 112 (120)
+|.|++|||||+.+|.||+++|.++|+|+++++++| ..|++|+++
T Consensus 89 ~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~ 134 (167)
T 4ds2_A 89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQ 134 (167)
T ss_dssp EESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTS
T ss_pred EEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999975 578888875
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=9.3e-38 Score=234.58 Aligned_cols=113 Identities=32% Similarity=0.583 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhhcCCCCC----eEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc-----
Q 033405 2 ASKRILKELKDLQKDPPTS----CSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK----- 72 (120)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~----i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~----- 72 (120)
|.+||++|+++|+++++++ +.+.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 6799999999999987764 5577889999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCeEeecCCC-------CCCCCcC-cHHHHHHHHHHHhh--chh
Q 033405 73 VFHPNINSNGSICLDILK-------EQWSPAL-TISKAFTIVSEVGC--IFL 114 (120)
Q Consensus 73 i~Hpnv~~~G~iCl~~l~-------~~W~p~~-~i~~vl~~i~~ll~--~p~ 114 (120)
+|||||+.+|+||+++|. ++|+|++ +|.+||.+|++||. +|+
T Consensus 157 ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn 208 (323)
T 3ceg_A 157 RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPY 208 (323)
T ss_dssp CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGG
T ss_pred cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999997 6899999 89999999999995 663
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.96 E-value=8.7e-31 Score=179.34 Aligned_cols=96 Identities=18% Similarity=0.297 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEecc
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGG----------VFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+||++|++++++ ++.+.++|++.|..++.||+||+|+|| .|.+++.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 7999999999998 577888999999999999999999999 999999999999999999999998
Q ss_pred -cccccccCCCeEeecCC-CC---CCCCcCcHHHHHH
Q 033405 73 -VFHPNINSNGSICLDIL-KE---QWSPALTISKAFT 104 (120)
Q Consensus 73 -i~Hpnv~~~G~iCl~~l-~~---~W~p~~~i~~vl~ 104 (120)
+||||||.+|+||+|++ +. .|+|+++|.++|.
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 99999999999999999 43 4559999999974
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.86 E-value=5.4e-22 Score=136.34 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCC---CCeEEeecCCCcceeEEEEeCCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEec------
Q 033405 4 KRILKELKDLQKDPP---TSCSAGPVAEDMFHWQATIMGPPDSPYAGGV---FLVSIHFPPDYPFKPPKVAFRT------ 71 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~---~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~---f~~~l~fp~~YP~~pP~v~f~t------ 71 (120)
+|..+|..++.+.-+ +...+...++...++-+.+.|.-..+|+|+. |.+.|-||++||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 567778877755322 2333445566666677777777779999998 8899999999999999998865
Q ss_pred -c---cc-cccccCCCeEeecCCCCCCCC-cCcHHHHHHHHHHHhhchhhhh
Q 033405 72 -K---VF-HPNINSNGSICLDILKEQWSP-ALTISKAFTIVSEVGCIFLCLK 117 (120)
Q Consensus 72 -~---i~-Hpnv~~~G~iCl~~l~~~W~p-~~~i~~vl~~i~~ll~~p~~~~ 117 (120)
+ |+ ||||+.+|+||+++| ++|+| +.++.++|++|+++|++|+-.+
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 999999999999999 57999 6799999999999999998765
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.83 E-value=3.6e-22 Score=134.22 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEecc
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGG----------VFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+||..||+.|-+ +++.+.++-..|...+.|++||+|+|+ .|.+++.||.+||..||+|+|.+.
T Consensus 36 ~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 36 TARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccc
Confidence 4799999999976 666667778899999999999999999 899999999999999999999995
Q ss_pred -cccccccCCCeEeecCCCCCCCC-------cCcHHHHH
Q 033405 73 -VFHPNINSNGSICLDILKEQWSP-------ALTISKAF 103 (120)
Q Consensus 73 -i~Hpnv~~~G~iCl~~l~~~W~p-------~~~i~~vl 103 (120)
.+||+++.+|+||++++ |+| .++|...+
T Consensus 110 dgkt~kmYr~GkICLdIh---wkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 110 EGKTVKMYRGGKICMTTH---FFPLWARNVPYFGISHVL 145 (168)
T ss_dssp TTTCSSEETTTEECCCTT---HHHHHHHTTTTCCHHHHH
T ss_pred cCcCccccCCCcEEeccc---cchhhHhcCCchhHHHHH
Confidence 89999999999999987 654 45666554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.65 E-value=2.6e-16 Score=106.35 Aligned_cols=80 Identities=21% Similarity=0.451 Sum_probs=70.7
Q ss_pred CCCcceeEEEEeCCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecc------cccccccCCCeEeecCCCCCCCC-cC
Q 033405 27 AEDMFHWQATIMGPPDSPYAGGVFLV--SIHFPPDYPFKPPKVAFRTK------VFHPNINSNGSICLDILKEQWSP-AL 97 (120)
Q Consensus 27 ~~~~~~w~~~i~gp~~tpy~gg~f~~--~l~fp~~YP~~pP~v~f~t~------i~Hpnv~~~G~iCl~~l~~~W~p-~~ 97 (120)
..++.+|.++|. .+|+|++|.+ .|-||++||++||.| |.++ ..||||+.+|+||++.|. +|++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-~W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH-TCCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc-ccCCCCC
Confidence 458999999996 5799999985 889999999999999 6655 489999999999999994 5988 78
Q ss_pred cHHHHHHHHHHHhhc
Q 033405 98 TISKAFTIVSEVGCI 112 (120)
Q Consensus 98 ~i~~vl~~i~~ll~~ 112 (120)
++.+++..++++|++
T Consensus 124 nL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 124 DLLGLIQVMIVVFGD 138 (146)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.31 E-value=0.0033 Score=40.51 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT 71 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t 71 (120)
.+...|+..|+.--+..+.+. ++....+.+.+....+..-+.-.+.+.+.+|++||.+||.+...+
T Consensus 13 e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 13 EEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 456678888876555555442 323456666665322222233478899999999999999998765
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=97.00 E-value=0.01 Score=38.10 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCeEEeecC--CCcceeEEEEeCCCCCCC--CCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 5 RILKELKDLQKDPPTSCSAGPVA--EDMFHWQATIMGPPDSPY--AGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~--~~~~~w~~~i~gp~~tpy--~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
+...|+..|+.--+..+.+.... .+...+.+.+..+.+..- ..-.+.+.|.+|++||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 46778888877555555543221 123444555542222111 124688999999999999999988763
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.021 Score=37.17 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCCCeEEeecC------CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecc
Q 033405 5 RILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~------~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
+-..|+..|+.--+..+.+.... .....+.+.+....+ .-..-.+.+.|.+|++||.+||.|.+.+.
T Consensus 14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 34567777776544444332111 124567777764322 11234788999999999999999998653
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.31 E-value=0.071 Score=36.91 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCCCCCeE-EeecCCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecccccccccCCC
Q 033405 4 KRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~-~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (120)
++|.+|+.++ |.. +...+.++...++.+... .|....+++.++.+||.++|.+...-|. |
T Consensus 4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------ 64 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--P------ 64 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--C------
T ss_pred HHHHHHHHHh------CCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--C------
Confidence 3678888887 221 223356788888888742 4578999999999999999988766553 1
Q ss_pred eEeecCCCCCCCCcCcHHHHHHHHHHHhhc
Q 033405 83 SICLDILKEQWSPALTISKAFTIVSEVGCI 112 (120)
Q Consensus 83 ~iCl~~l~~~W~p~~~i~~vl~~i~~ll~~ 112 (120)
+.-.|+|..++.+++...+..+..
T Consensus 65 ------~~~~w~~~ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 65 ------FCASWTPQSSLISIYSQFLAAIES 88 (186)
T ss_dssp ------CCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred ------cccccCCCccHHHHHHHHHHHHHH
Confidence 013699999999998877777653
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.94 E-value=0.15 Score=32.81 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCC-----CcceeEEEEeCCCC-C-CCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033405 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPD-S-PYAGGVFLVSIHFPPDYPFKPPKVAFRT 71 (120)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~-t-py~gg~f~~~l~fp~~YP~~pP~v~f~t 71 (120)
.+...|+..|+.--+..+.+..... ......+.+. +.+ . .-..-.+.+.|.||++||.++|.|....
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 3456788888765444454321111 1345566665 221 1 0012468899999999999999998753
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.13 E-value=0.062 Score=34.43 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCC--CeEEeec-CCCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033405 5 RILKELKDLQKDPPT--SCSAGPV-AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT 71 (120)
Q Consensus 5 RL~~E~~~l~~~~~~--~i~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t 71 (120)
+...|+..|+.--+. .+.+... ..+...+.+.+... +..=..-.+.+.+.+|++||..+|.|...+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 345677777654322 3333211 12345777777632 210112478999999999999999987653
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.73 E-value=0.11 Score=34.55 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEEEEEECCCCCCCCCCeEEEecc
Q 033405 49 VFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 49 ~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.46 E-value=0.096 Score=34.61 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEEECCCCCCCCCCeEEEecc
Q 033405 49 VFLVSIHFPPDYPFKPPKVAFRTK 72 (120)
Q Consensus 49 ~f~~~l~fp~~YP~~pP~v~f~t~ 72 (120)
.+.+.|.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987764
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=73.02 E-value=2.8 Score=18.87 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcCCCCCe
Q 033405 3 SKRILKELKDLQKDPPTSC 21 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i 21 (120)
..||.-|+...+.+++.|.
T Consensus 7 ldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 7 LDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHhhhccCCCCCC
Confidence 5799999999999988764
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=42.91 E-value=26 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCEEEEEEECCCCCCC-----CCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYPF-----KPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~-----~pP~v~f~ 70 (120)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 45899999999999998 78988775
No 66
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=32.43 E-value=71 Score=21.72 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=34.9
Q ss_pred CEEEEEEECCCCCCCCCCeEEEecc--cccccccCCCeEeecCCCCCCCCcCcHHHHHHHH
Q 033405 48 GVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKAFTIV 106 (120)
Q Consensus 48 g~f~~~l~fp~~YP~~pP~v~f~t~--i~Hpnv~~~G~iCl~~l~~~W~p~~~i~~vl~~i 106 (120)
....+.|.+.+..|...|.++|..+ .-+|.= -+++--...|.+..++.+=|..|
T Consensus 124 ~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr-----~~~~~nl~~Wd~~~~i~~NL~~i 179 (186)
T 3zqs_A 124 NNVSINIEVDPRHPTMLPECFFLGADHVVKPLG-----IKLSRNIHLWDPENSVLQNLKDV 179 (186)
T ss_dssp TTEEEEEECCTTSTTSCCEEEEEECHHHHHHHH-----HHHHHHGGGCCTTSCHHHHHHHH
T ss_pred CCcEEEEEECCCCCCcCCceEEECChHHHHHHH-----HHHhhhHhhcCCCCCHHHHHHHH
Confidence 4567889999999999999999865 111110 00100015799999877666554
No 67
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=31.26 E-value=45 Score=18.93 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCC
Q 033405 3 SKRILKELKDLQKDPPTSCSAGPVAED 29 (120)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~~ 29 (120)
..|+.+|++++++....-+++.|..++
T Consensus 33 y~rms~emQrI~r~GGkIvSItp~~~~ 59 (67)
T 1b33_N 33 YENWFREQQRIQKMGGKIVKVELATGK 59 (67)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred HHHHhHHHHHHHHcCCeEEEEEECCCC
Confidence 368999999999998888888877643
No 68
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=29.39 E-value=35 Score=22.08 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCCCeEEEe---cccccccccCCCeEeecCCCCC
Q 033405 62 FKPPKVAFR---TKVFHPNINSNGSICLDILKEQ 92 (120)
Q Consensus 62 ~~pP~v~f~---t~i~Hpnv~~~G~iCl~~l~~~ 92 (120)
..||.|.+. +.--|+++..+|..|+++|.++
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 75 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEA 75 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBTT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCHH
Confidence 358888774 3356889999999999999644
No 69
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=25.26 E-value=1.6e+02 Score=19.81 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCcceeEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033405 28 EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT 71 (120)
Q Consensus 28 ~~~~~w~~~i~gp~~tpy~gg~f~~~l~fp~~YP~~pP~v~f~t 71 (120)
+.-.+|.+.+.|+.+.-...-.=++.+.+.+.||. |.-.+..
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~ 71 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEA 71 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeC
Confidence 45778999999987654444566788889999975 5444443
No 70
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=25.14 E-value=45 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=21.4
Q ss_pred CCCEEEEEEECCCCCCC-------CCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYPF-------KPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~-------~pP~v~f~ 70 (120)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 45899999999999984 78988875
No 71
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=25.11 E-value=43 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=20.8
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 3588999999999998 568888775
No 72
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=24.92 E-value=46 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~-------~pP~v~f~ 70 (120)
.|.|.|+=.+|--||. .||.|.|.
T Consensus 134 ~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 134 DGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 5899999999999997 78988875
No 73
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=24.72 E-value=46 Score=18.10 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.7
Q ss_pred EEEECCCCCCC
Q 033405 52 VSIHFPPDYPF 62 (120)
Q Consensus 52 ~~l~fp~~YP~ 62 (120)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 46778999984
No 74
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=24.17 E-value=1.5e+02 Score=19.18 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=30.6
Q ss_pred cceeE--EEEeCCCCCCCC-CCEEEEEEECCCCCCCCCCeEEEeccc
Q 033405 30 MFHWQ--ATIMGPPDSPYA-GGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (120)
Q Consensus 30 ~~~w~--~~i~gp~~tpy~-gg~f~~~l~fp~~YP~~pP~v~f~t~i 73 (120)
+..|. +.+.|+.+.... .-.=++.+.+.+.|+. |...+..+.
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pP 76 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPP 76 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTT
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCC
Confidence 46998 888998887653 4556788888899884 776666553
No 75
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=23.78 E-value=56 Score=22.41 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred CEEEEEEECCCCCCCC-----CCeEEEe
Q 033405 48 GVFLVSIHFPPDYPFK-----PPKVAFR 70 (120)
Q Consensus 48 g~f~~~l~fp~~YP~~-----pP~v~f~ 70 (120)
|.|.|+=.+|--||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999987 8888775
No 76
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=23.58 E-value=1.3e+02 Score=18.09 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.7
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYPFKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP~~pP~v~f~ 70 (120)
+..+...+.|+..|+. +|+|.+.
T Consensus 28 ~R~~~~~V~F~~~F~~-~P~V~v~ 50 (101)
T 2ccv_A 28 TRELAKNITFASPYCR-PPVVLLS 50 (101)
T ss_dssp CEEEEEEEECSSCCSS-CCEEEEE
T ss_pred ceEEEEEeEeCcccCC-CCEEEEE
Confidence 3467888999999995 8998875
No 77
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=23.45 E-value=55 Score=16.53 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc
Q 033405 3 SKRILKELKDLQK 15 (120)
Q Consensus 3 ~~RL~~E~~~l~~ 15 (120)
++|+..|.+.+.+
T Consensus 30 ~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 30 IKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5889999888753
No 78
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=23.24 E-value=49 Score=24.40 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=.+|--|| .+||.|.|.
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 588999999999998 468888875
No 79
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=23.08 E-value=50 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
+.|.|.|+=.+|--|| .+||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 4689999999999998 458888875
No 80
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=22.87 E-value=45 Score=15.26 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhc
Q 033405 4 KRILKELKDLQK 15 (120)
Q Consensus 4 ~RL~~E~~~l~~ 15 (120)
|++.+|+..|+.
T Consensus 13 R~lLkeyY~L~~ 24 (26)
T 2c5k_P 13 RLLLREFYNLEN 24 (26)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhhhc
Confidence 456688877764
No 81
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=21.61 E-value=56 Score=23.84 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCCC------------------CCCeEEEe
Q 033405 46 AGGVFLVSIHFPPDYPF------------------KPPKVAFR 70 (120)
Q Consensus 46 ~gg~f~~~l~fp~~YP~------------------~pP~v~f~ 70 (120)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 34899999999999994 68888875
No 82
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=21.51 E-value=57 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=20.1
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=.+|-.|| .+||.|.|.
T Consensus 154 ~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 154 NGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 488999999999997 467888875
No 83
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=20.50 E-value=61 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033405 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (120)
Q Consensus 47 gg~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (120)
.|.|.|+=.+|--|| .+||.|.|.
T Consensus 187 ~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 187 NGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 488999999999997 468888875
No 84
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.00 E-value=71 Score=14.16 Aligned_cols=11 Identities=55% Similarity=0.625 Sum_probs=7.2
Q ss_pred HHHHHHHHHHh
Q 033405 3 SKRILKELKDL 13 (120)
Q Consensus 3 ~~RL~~E~~~l 13 (120)
.+.+.+|+++-
T Consensus 10 qkkirkelkqr 20 (26)
T 1m46_B 10 QKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677787653
Done!