BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033407
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
ITCGQV+ SLAPCI ++R GG PP CCNG+R++N ARTTPDRQAACNCLKQ S+P
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
G+N N AA LP +CGVSIPYKIS +T+C+ +
Sbjct: 61 GVNPNNAAALPGKCGVSIPYKISASTNCATV 91
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 69/92 (75%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AI+CGQV ++APCI++ R G P CC+GVRSLN AARTT DR+AACNCLK A +
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
G+NA AA +P +CGVSIPY IS +TDCSR+
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AITCGQVT +LAPC+A+LR G P CC GV++L +ARTT DRQ AC CLK A +I
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
GIN AAGLP CGV+IPYKISP+TDCS++
Sbjct: 59 SGINLGKAAGLPSTCGVNIPYKISPSTDCSKV 90
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AI+CG VT L+PC+ +L TGG P P CC GV+ L AA TTPDRQAACNCLK A SI
Sbjct: 1 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCSRILF 116
+N N AA LP +CGV+IPYKIS T+C+ + F
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVKF 93
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
ITCGQV ++ PC+ + R GG P CC+GVRSL AA TT DR+ ACNCLK A R I
Sbjct: 1 ITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
G+NA AA +P +CGVS+PY IS + DCSR+
Sbjct: 60 GLNAGNAASIPSKCGVSVPYTISASIDCSRV 90
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+TCGQV G+LA CI FL+ GG PP CC GV+++ ++RTT DR+A C+CLK A ++
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
GIN N A LP +CGV+IPYKIS +T+C+ I
Sbjct: 60 GINPNNAEALPGKCGVNIPYKISTSTNCNSI 90
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+ CGQV + PC+ +++ GG P CCNGVR L+ A+++ DRQ CNCLK R I
Sbjct: 1 LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
+N N AA +P +C V++PY ISP+ DCSRI
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+ CGQV + PC+ +++ GG P CCNGVR L+ A+++ DRQ CNCLK R I
Sbjct: 1 LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
+N N AA +P +C V++PY ISP+ DCSRI
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
I CG V + PC+++++ GG P CC+GV++L+ AR+ DRQ+ACNCLK R I
Sbjct: 1 IDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSRI 114
+N + A +P +CGV++PY IS N DCSR+
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG 84
CG V + PC+++++ GG P CC+GV++L+ AR+ DRQ+ACNCLK R I
Sbjct: 2 DCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85 INANVAAGLPRQCGVSIPYKISPNTDCSRI 114
+N + A +P +CGV++PY IS N DCSR+
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,027,129
Number of Sequences: 62578
Number of extensions: 100118
Number of successful extensions: 335
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 14
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)