Query 033407
Match_columns 120
No_of_seqs 151 out of 861
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 3E-28 6.4E-33 159.3 4.6 89 24-112 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 5.5E-16 1.2E-20 97.9 3.9 67 26-102 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.6 2.4E-15 5.3E-20 91.9 2.9 62 33-99 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.4 3.7E-14 8E-19 92.7 0.2 71 23-103 19-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 2E-12 4.3E-17 80.4 3.2 60 31-102 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.0 3.1E-10 6.7E-15 70.5 3.9 69 26-103 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 1.3E-11 2.8E-16 80.0 -3.7 70 26-103 8-87 (90)
8 PF14547 Hydrophob_seed: Hydro 93.1 0.075 1.6E-06 34.5 2.1 76 26-111 2-84 (85)
9 cd01958 HPS_like HPS_like: Hyd 91.2 0.32 7E-06 31.5 3.4 72 25-102 3-80 (85)
10 PF07172 GRP: Glycine rich pro 52.0 12 0.00027 24.5 2.0 9 1-9 1-9 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 22.2 63 0.0014 21.0 1.6 63 31-101 13-104 (110)
12 PF05617 Prolamin_like: Prolam 20.6 82 0.0018 18.7 1.8 28 33-60 9-41 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.95 E-value=3e-28 Score=159.26 Aligned_cols=89 Identities=66% Similarity=1.213 Sum_probs=83.6
Q ss_pred CCCcccccCccccHHHHhCCCCCCCccchhhhhhhhhccCCcccccccceeecccccCCCCCCHHHHhhhhhhcCCCCCC
Q 033407 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY 103 (120)
Q Consensus 24 ~~C~~v~~~L~pC~~y~~~~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 103 (120)
.+|.++...|.||++|++|++..|+++||++++++++.++|+.|++++|+|+++...++++||+++|.+||++||+++||
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 36999999999999999988778999999999999999999999999999999887777679999999999999999999
Q ss_pred CCCCCCCCC
Q 033407 104 KISPNTDCS 112 (120)
Q Consensus 104 ~is~~~dC~ 112 (120)
+|++++||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.61 E-value=5.5e-16 Score=97.93 Aligned_cols=67 Identities=27% Similarity=0.582 Sum_probs=53.6
Q ss_pred CcccccCccccHHHHhCCC--CCCCccchhhhhhhhhccCCcccccccceeecccccCCCCCCHHHHhhhhhhcCCCCC
Q 033407 26 CGQVTGSLAPCIAFLRTGG--RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP 102 (120)
Q Consensus 26 C~~v~~~L~pC~~y~~~~~--~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p 102 (120)
|+.....|.||++|+++++ ..|+++||+++|++ |++ |+|.+.....++.||.++|.+||+.||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 5555578999999999876 36889999999974 334 7777655544556999999999999999877
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.55 E-value=2.4e-15 Score=91.87 Aligned_cols=62 Identities=39% Similarity=0.852 Sum_probs=52.7
Q ss_pred ccccHHHHhCCCCCCCccchhhhhhhhhccCCcccccccceeecccccCCCCC-CHHHHhhhhhhcCC
Q 033407 33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGV 99 (120)
Q Consensus 33 L~pC~~y~~~~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv 99 (120)
|.||++|+++++..|+++||++++++++. |++++|.++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 67999999988668999999999999764 6789999998776554445 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.40 E-value=3.7e-14 Score=92.67 Aligned_cols=71 Identities=32% Similarity=0.743 Sum_probs=46.9
Q ss_pred CCCCcccccCcccc---HHHHhCCCCCCCccchhhhhhhhhccCCcccccccceeecccc-cCCCCCCHHHHhhhhhhcC
Q 033407 23 AITCGQVTGSLAPC---IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY-RSIPGINANVAAGLPRQCG 98 (120)
Q Consensus 23 ~~~C~~v~~~L~pC---~~y~~~~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~-~~~~~in~~~a~~LP~~Cg 98 (120)
..+|.+ .|.|| +.|+.++. .|+++||+++|++.+ .|+.++|+.+++.. ..+ +||.+++.+||++||
T Consensus 19 ~~~c~~---~l~~c~~~~~~~~~~~-~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg 88 (96)
T PF14368_consen 19 CCSCAN---SLLPCCPCLCYVTGGP-APSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACG 88 (96)
T ss_dssp TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCT
T ss_pred cchhHH---HHhccccchhccCCCC-CCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcC
Confidence 556644 46666 78888544 899999999999853 26678888887665 344 799999999999999
Q ss_pred CCCCC
Q 033407 99 VSIPY 103 (120)
Q Consensus 99 v~~p~ 103 (120)
++.|.
T Consensus 89 ~~~~~ 93 (96)
T PF14368_consen 89 VPVPP 93 (96)
T ss_dssp SS-S-
T ss_pred CCCCC
Confidence 99874
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.29 E-value=2e-12 Score=80.38 Aligned_cols=60 Identities=25% Similarity=0.618 Sum_probs=48.1
Q ss_pred cCccccHHHHhCCCCCCCccchhhhhhhhhccCCcccccccceeeccc-ccCCCCCCHHHHhhhhhhcCCCCC
Q 033407 31 GSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA-YRSIPGINANVAAGLPRQCGVSIP 102 (120)
Q Consensus 31 ~~L~pC~~y~~~~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~-~~~~~~in~~~a~~LP~~Cgv~~p 102 (120)
..|.+|++|+++++ +||++||+.+|+- ..++|..+++. ..+| ||.++|++||++||+++|
T Consensus 4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~~---------~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGS-PPSAACCAKLKEQ---------QSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCC-CCCHHHHHHHhcC---------CCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence 48999999999775 8999999999971 25666666553 2333 899999999999999875
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.02 E-value=3.1e-10 Score=70.50 Aligned_cols=69 Identities=49% Similarity=0.950 Sum_probs=51.8
Q ss_pred CcccccCccccHHHHhCC--CCCCCccchhhhhhhhhccCCcccccccceeecc--cccCCCC---CCHHHHhhhhhhcC
Q 033407 26 CGQVTGSLAPCIAFLRTG--GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQ--AYRSIPG---INANVAAGLPRQCG 98 (120)
Q Consensus 26 C~~v~~~L~pC~~y~~~~--~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~--~~~~~~~---in~~~a~~LP~~Cg 98 (120)
|.++...+.+|.+|++++ ...|+.+||++++.+. +..|+|... ....+.. ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 566667788999999986 3578899999999984 235666543 2222211 58999999999999
Q ss_pred CCCCC
Q 033407 99 VSIPY 103 (120)
Q Consensus 99 v~~p~ 103 (120)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 98775
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.98 E-value=1.3e-11 Score=80.02 Aligned_cols=70 Identities=37% Similarity=0.795 Sum_probs=55.2
Q ss_pred CcccccCccccHHHHhCCCCCCCccchhhhhhhhhccCCcccccccceeecccccCC----------CCCCHHHHhhhhh
Q 033407 26 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI----------PGINANVAAGLPR 95 (120)
Q Consensus 26 C~~v~~~L~pC~~y~~~~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~~----------~~in~~~a~~LP~ 95 (120)
|..+...+.+|.+|++++...|+.+||++|+++. +++.|..++....+. .+++..+|.+||+
T Consensus 8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~ 79 (90)
T PF00234_consen 8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPS 79 (90)
T ss_dssp CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHH
T ss_pred hhhccccccccHHHHhcccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3333346899999999876678999999999984 467777777554431 2588999999999
Q ss_pred hcCCCCCC
Q 033407 96 QCGVSIPY 103 (120)
Q Consensus 96 ~Cgv~~p~ 103 (120)
.||+++|+
T Consensus 80 ~C~v~~~~ 87 (90)
T PF00234_consen 80 MCNVSPPY 87 (90)
T ss_dssp HTTSSSSS
T ss_pred HCCCCCCC
Confidence 99999987
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=93.07 E-value=0.075 Score=34.48 Aligned_cols=76 Identities=26% Similarity=0.520 Sum_probs=45.9
Q ss_pred CcccccCccccHHHHhC----CCCCCCccchhhhhhhhhccCCcccccccceee--cccccCCCCCCHH-HHhhhhhhcC
Q 033407 26 CGQVTGSLAPCIAFLRT----GGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQAYRSIPGINAN-VAAGLPRQCG 98 (120)
Q Consensus 26 C~~v~~~L~pC~~y~~~----~~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cg 98 (120)
|.....+|.-|...+.. .+..+..+||+-++.+.+. ..+.|+|- |...-++-++|.+ ....|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 44444577788888711 1224678999999998753 24678884 3322221123322 4567778899
Q ss_pred CCCCCCCCCCCCC
Q 033407 99 VSIPYKISPNTDC 111 (120)
Q Consensus 99 v~~p~~is~~~dC 111 (120)
...| +++.|
T Consensus 76 k~~p----~gf~C 84 (85)
T PF14547_consen 76 KTVP----SGFTC 84 (85)
T ss_pred CcCc----CCCcC
Confidence 9876 45555
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=91.22 E-value=0.32 Score=31.54 Aligned_cols=72 Identities=29% Similarity=0.509 Sum_probs=43.0
Q ss_pred CCcccccCccccHHHHhCC----CCCCCccchhhhhhhhhccCCcccccccceeecccccCCC-CCCHHH-HhhhhhhcC
Q 033407 25 TCGQVTGSLAPCIAFLRTG----GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP-GINANV-AAGLPRQCG 98 (120)
Q Consensus 25 ~C~~v~~~L~pC~~y~~~~----~~~Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~~~-~in~~~-a~~LP~~Cg 98 (120)
.|.....+|.-|..-+... +..|..+||+-++.+.+. | ...|.|-...++-++ ++|.+. ..-|-..||
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi~~~~pv~l~llln~CG 76 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGISINIPVALSLLLNSCG 76 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence 4554445677787776321 225678999999998753 2 467888543332221 233333 444556799
Q ss_pred CCCC
Q 033407 99 VSIP 102 (120)
Q Consensus 99 v~~p 102 (120)
-..|
T Consensus 77 k~~P 80 (85)
T cd01958 77 RNVP 80 (85)
T ss_pred CcCC
Confidence 9877
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.97 E-value=12 Score=24.52 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.6
Q ss_pred CchhHHHHH
Q 033407 1 MAALKLVCA 9 (120)
Q Consensus 1 M~~~~~~~~ 9 (120)
|+.++++++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 775444333
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=22.24 E-value=63 Score=20.96 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=38.3
Q ss_pred cCccccHHHHhCC---CCC-----------CCccchhhhhhhhhccCCcccccccceeecccccC-----------CC--
Q 033407 31 GSLAPCIAFLRTG---GRF-----------PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRS-----------IP-- 83 (120)
Q Consensus 31 ~~L~pC~~y~~~~---~~~-----------Ps~~CC~~vk~l~~~a~t~~d~~~~C~Cl~~~~~~-----------~~-- 83 (120)
..|.+|..|+.-. ... ....||.-++.+.. ++-|.-+...... +.
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~--------qcrC~al~~~~~~~~~~~~~~~~~~~~~ 84 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPE--------QCRCEALRQMVQGVIQQQQQQQEQQQGQ 84 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcH--------hhhHHHHHHHHHHHHHhhhccccccCcC
Confidence 4688999998632 111 12479999998743 3444444422110 11
Q ss_pred --CCCHHHHhhhhhhcCCCC
Q 033407 84 --GINANVAAGLPRQCGVSI 101 (120)
Q Consensus 84 --~in~~~a~~LP~~Cgv~~ 101 (120)
..-...|..||+.||+..
T Consensus 85 ~~~~~~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 85 EVERMRQAAQNLPSMCNLYP 104 (110)
T ss_pred hHHHHHHHHHhhchhcCCCC
Confidence 123557999999999986
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=20.58 E-value=82 Score=18.69 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=18.7
Q ss_pred ccccHHHHh-----CCCCCCCccchhhhhhhhh
Q 033407 33 LAPCIAFLR-----TGGRFPPPPCCNGVRSLNG 60 (120)
Q Consensus 33 L~pC~~y~~-----~~~~~Ps~~CC~~vk~l~~ 60 (120)
...|...+. |.....+.+||.++..+.+
T Consensus 9 ~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 9 SPGCGDEIFNSFFNGNKKNIGPECCKAINKMGK 41 (70)
T ss_pred ccchHHHHHHHHHcCCCCCCChHHHHHHHHHhH
Confidence 445665543 3324788999999998754
Done!