Query 033409
Match_columns 120
No_of_seqs 100 out of 179
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 22:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lif_A Core protein P21; signa 83.6 0.24 8.1E-06 25.6 0.0 20 8-27 3-22 (27)
2 1gng_X Frattide, glycogen synt 42.0 8.2 0.00028 21.2 0.8 11 97-107 9-19 (39)
3 4afj_X Proto-oncogene FRAT1; t 41.3 7.1 0.00024 20.3 0.4 9 99-107 2-10 (30)
4 3mk7_C Cytochrome C oxidase, C 33.0 20 0.0007 27.2 2.0 25 8-32 2-26 (311)
5 2ctp_A DNAJ homolog subfamily 26.3 15 0.00053 22.0 0.2 14 96-109 5-18 (78)
6 2och_A Hypothetical protein DN 26.2 16 0.00054 21.7 0.2 14 96-109 6-19 (73)
7 2ej7_A HCG3 gene; HCG3 protein 25.9 15 0.0005 22.3 0.1 14 96-109 7-20 (82)
8 2dn9_A DNAJ homolog subfamily 25.1 17 0.00058 21.8 0.2 14 96-109 5-18 (79)
9 2cug_A Mkiaa0962 protein; DNAJ 24.8 17 0.00059 22.4 0.2 14 96-109 15-28 (88)
10 2ys8_A RAB-related GTP-binding 24.2 18 0.00061 22.6 0.2 13 97-109 26-38 (90)
11 1wjz_A 1700030A21RIK protein; 23.6 17 0.00059 22.5 0.1 14 96-109 14-27 (94)
12 2qsa_A DNAJ homolog DNJ-2; J-d 21.7 22 0.00076 22.8 0.3 14 97-110 14-27 (109)
13 2dmx_A DNAJ homolog subfamily 20.9 23 0.00078 21.9 0.2 16 95-110 6-21 (92)
14 2knc_A Integrin alpha-IIB; tra 20.6 1.1E+02 0.0036 17.9 3.1 34 1-34 3-36 (54)
No 1
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=83.63 E-value=0.24 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHhhhhhhhh
Q 033409 8 SQLFPIFILTIMALPLVPYT 27 (120)
Q Consensus 8 g~tfpyFvLt~l~lvLIP~T 27 (120)
|--|+.|+|+++++.++|..
T Consensus 3 gcsfsiFlLaLlscLt~Pas 22 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVS 22 (27)
Confidence 55789999999999999975
No 2
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=41.98 E-value=8.2 Score=21.24 Aligned_cols=11 Identities=9% Similarity=-0.170 Sum_probs=7.7
Q ss_pred ccchhhHhHhh
Q 033409 97 RFGTWGLRFRY 107 (120)
Q Consensus 97 ~fDPYeIL~~~ 107 (120)
.=|||+.|+-.
T Consensus 9 ~ddP~~lLQ~L 19 (39)
T 1gng_X 9 DDDPHRLLQQL 19 (39)
T ss_dssp --CHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35999999854
No 3
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=41.26 E-value=7.1 Score=20.34 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=5.9
Q ss_pred chhhHhHhh
Q 033409 99 GTWGLRFRY 107 (120)
Q Consensus 99 DPYeIL~~~ 107 (120)
|||+.|+-.
T Consensus 2 Dph~lLQqL 10 (30)
T 4afj_X 2 DPHRLLQQL 10 (30)
T ss_dssp --CHHHHHH
T ss_pred CHHHHHHHH
Confidence 899999865
No 4
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=33.03 E-value=20 Score=27.22 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHhhhhhhhhHHhhh
Q 033409 8 SQLFPIFILTIMALPLVPYTILKLC 32 (120)
Q Consensus 8 g~tfpyFvLt~l~lvLIP~T~~~l~ 32 (120)
+++|.+|+..+.+..++-+.+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (311)
T 3mk7_C 2 STFWSGYIALLTLGTIVALFWLIFA 26 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888866666666655554443
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.35 E-value=15 Score=21.98 Aligned_cols=14 Identities=0% Similarity=-0.211 Sum_probs=11.2
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
..-|||+||++-..
T Consensus 5 ~~~~~y~iLgv~~~ 18 (78)
T 2ctp_A 5 SSGDYYEILGVSRG 18 (78)
T ss_dssp CSCCHHHHHTCCTT
T ss_pred CCCCHHHHcCCCCC
Confidence 45799999999654
No 6
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=26.18 E-value=16 Score=21.71 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=11.1
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
..-|||+||++-..
T Consensus 6 ~~~~~y~iLgl~~~ 19 (73)
T 2och_A 6 KETGYYDVLGVKPD 19 (73)
T ss_dssp CCCCHHHHHTCCTT
T ss_pred CCCCHHHHcCCCCC
Confidence 45799999999654
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.88 E-value=15 Score=22.26 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=11.3
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
..-|||+||++-..
T Consensus 7 ~~~~~y~iLgv~~~ 20 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQ 20 (82)
T ss_dssp SSCCHHHHTTCCTT
T ss_pred CCcCHHHHcCCCCC
Confidence 45799999999654
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.07 E-value=17 Score=21.81 Aligned_cols=14 Identities=0% Similarity=-0.204 Sum_probs=11.1
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
..-|||+||++-..
T Consensus 5 ~~~~~y~iLgv~~~ 18 (79)
T 2dn9_A 5 SSGDYYQILGVPRN 18 (79)
T ss_dssp CCSCHHHHHTCCTT
T ss_pred CCCCHHHHcCCCCC
Confidence 45799999998653
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=24.77 E-value=17 Score=22.44 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=11.3
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
...|||+||++-..
T Consensus 15 ~~~d~y~iLgv~~~ 28 (88)
T 2cug_A 15 LDFDPYRVLGVSRT 28 (88)
T ss_dssp SSSCHHHHHTCCTT
T ss_pred CCCCHHHHcCcCCC
Confidence 45899999998653
No 10
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.24 E-value=18 Score=22.58 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=10.4
Q ss_pred ccchhhHhHhhhh
Q 033409 97 RFGTWGLRFRYKE 109 (120)
Q Consensus 97 ~fDPYeIL~~~~~ 109 (120)
.-|||+||++-..
T Consensus 26 ~~~~y~iLgv~~~ 38 (90)
T 2ys8_A 26 SKDSWDMLGVKPG 38 (90)
T ss_dssp CSSHHHHHTCCTT
T ss_pred CCCHHHHcCcCCC
Confidence 3699999998654
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=23.62 E-value=17 Score=22.49 Aligned_cols=14 Identities=0% Similarity=-0.216 Sum_probs=11.3
Q ss_pred CccchhhHhHhhhh
Q 033409 96 TRFGTWGLRFRYKE 109 (120)
Q Consensus 96 ~~fDPYeIL~~~~~ 109 (120)
..-|||+||++-..
T Consensus 14 ~~~~~y~iLgv~~~ 27 (94)
T 1wjz_A 14 LKKDWYSILGADPS 27 (94)
T ss_dssp SCSCHHHHTTCCTT
T ss_pred CCCChHHHcCCCCC
Confidence 56799999998654
No 12
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=21.72 E-value=22 Score=22.77 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=11.5
Q ss_pred ccchhhHhHhhhhh
Q 033409 97 RFGTWGLRFRYKES 110 (120)
Q Consensus 97 ~fDPYeIL~~~~~~ 110 (120)
.=|||+||++-...
T Consensus 14 ~~~~y~iLgv~~~a 27 (109)
T 2qsa_A 14 LENCYDVLEVNREE 27 (109)
T ss_dssp TSCHHHHTTCCGGG
T ss_pred CCCHHHHcCCCCCC
Confidence 35999999998765
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=23 Score=21.95 Aligned_cols=16 Identities=0% Similarity=-0.245 Sum_probs=11.9
Q ss_pred cCccchhhHhHhhhhh
Q 033409 95 HTRFGTWGLRFRYKES 110 (120)
Q Consensus 95 ~~~fDPYeIL~~~~~~ 110 (120)
...-|||+||++-...
T Consensus 6 ~~~~~~y~iLgv~~~a 21 (92)
T 2dmx_A 6 SGMANYYEVLGVQASA 21 (92)
T ss_dssp CCCCCHHHHHTCCTTC
T ss_pred CCCcCHHHHcCCCCCC
Confidence 3447999999987643
No 14
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.64 E-value=1.1e+02 Score=17.86 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=18.1
Q ss_pred CCccccCCCchhHHHHHHHhhhhhhhhHHhhhcc
Q 033409 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHA 34 (120)
Q Consensus 1 ~~~YDE~g~tfpyFvLt~l~lvLIP~T~~~l~~~ 34 (120)
|++=+++=..|.+.+..+.++.++.+-...++|.
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444455666655555555555555555544
Done!